Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
HSPG2	3339	hgsc.bcm.edu	hg19	1	22180823	22180823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	HSPG2	NM_005529	exon50	c.G6302A	p.R2101H	CGCAGACGGGAGC	.	40.0	31.0	113.0	0.0	.	311	.	.	Atlas-SNP
CEP85	64793	hgsc.bcm.edu	hg19	1	26601548	26601548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CEP85	NM_022778	exon12	c.A1888G	p.T630A	CTGCGCACAGCCG	.	59.0	39.0	132.0	0.0	.	61	.	.	Atlas-SNP
OSBPL9	114883	hgsc.bcm.edu	hg19	1	52238325	52238325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	OSBPL9	NM_148909	exon14	c.C1130T	p.S377F	CAGGGTCTGTGGA	.	39.0	27.0	97.0	0.0	.	192	.	.	Atlas-SNP
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120462183	120462183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	NOTCH2	NM_024408	exon31	c.A5533C	p.S1845R	CATCACTCAAATC	.	164.0	49.0	140.0	0.0	.	348	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144886225	144886225	+	Silent	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	PDE4DIP	NM_001198832	exon26	c.G3207A	p.Q1069Q	TTCTTCCTGAAGA	.	241.0	29.0	198.0	0.0	.	817	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152286383	152286383	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	FLG	NM_002016	exon3	c.G979T	p.E327X	ACTGCTCCCACGC	.	205.0	69.0	178.0	0.0	.	900	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152286384	152286384	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	FLG	NM_002016	exon3	c.G978A	p.W326X	CTGCTCCCACGCA	.	203.0	69.0	177.0	0.0	.	900	.	.	Atlas-SNP
LOR	4014	hgsc.bcm.edu	hg19	1	153234342	153234342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	LOR	NM_000427	exon2	c.C917T	p.A306V	AGCAGGCGCCTAC	.	214.0	51.0	178.0	0.0	.	19	.	.	Atlas-SNP
CCT3	7203	hgsc.bcm.edu	hg19	1	156287032	156287032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CCT3	NM_005998	exon10	c.C899A	p.A300D	TGCTGAGCTAAAT	.	240.0	71.0	203.0	0.0	.	61	.	.	Atlas-SNP
POU2F1	5451	hgsc.bcm.edu	hg19	1	167343488	167343488	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	POU2F1	NM_002697	exon6	c.G546A	p.T182T	TGCCACGCCCATG	.	367.0	112.0	322.0	0.0	.	120	.	.	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171511282	171511282	+	Silent	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	.	NM_015172	exon16	c.C4671T	p.N1557N	TGGCAACAATGGT	.	323.0	110.0	233.0	0.0	.	.	.	.	Atlas-SNP
MYOC	4653	hgsc.bcm.edu	hg19	1	171621369	171621369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	MYOC	NM_000261	exon1	c.G383A	p.R128Q	TGGTCCCGCTCCC	.	133.0	37.0	130.0	0.0	.	69	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181765841	181765841	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CACNA1E	NM_001205293	exon47	c.G6246A	p.E2082E	CAGGGAGCGGGGA	.	162.0	51.0	153.0	0.0	.	778	.	.	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	hg19	1	190423953	190423953	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	FAM5C	NM_199051	exon2	c.T68A	p.L23Q	AGACTCAGTGCTA	.	227.0	74.0	167.0	0.0	.	343	.	.	Atlas-SNP
DENND1B	163486	hgsc.bcm.edu	hg19	1	197509163	197509163	+	Silent	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DENND1B	NM_001195215	exon20	c.A1446G	p.V482V	ATATTGTACAGAA	.	157.0	43.0	126.0	0.0	.	108	.	.	Atlas-SNP
DEGS1	8560	hgsc.bcm.edu	hg19	1	224380171	224380171	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DEGS1	NM_003676	exon3	c.G963A	p.V321V	GATGGTGCTGGAG	.	148.0	35.0	127.0	0.0	.	24	.	.	Atlas-SNP
OR11L1	391189	hgsc.bcm.edu	hg19	1	248004283	248004283	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	OR11L1	NM_001001959	exon1	c.A916T	p.R306X	TCCTTCTCATGAC	.	210.0	54.0	209.0	0.0	.	108	.	.	Atlas-SNP
DNMT3A	1788	hgsc.bcm.edu	hg19	2	25466768	25466768	+	Silent	SNP	T	T	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DNMT3A	NM_175629	exon16	c.A1935T	p.T645T	CTCACCTGTAGCG	.	43.0	15.0	81.0	0.0	.	1807	.	.	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	hg19	2	29268229	29268229	+	Missense_Mutation	SNP	G	G	A	rs371609539		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	FAM179A	NM_199280	exon19	c.G2675A	p.R892H	GAGTGCGTTTCCT	.	37.0	18.0	41.0	0.0	.	106	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	167992505	167992505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	XIRP2	NM_001199143	exon3	c.C495A	p.D165E	TTCAGACAAGAAA	.	74.0	33.0	96.0	0.0	.	914	.	.	Atlas-SNP
KLHL41	10324	hgsc.bcm.edu	hg19	2	170377511	170377511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	.	NM_006063	exon5	c.T1703C	p.I568T	ATGACATATGGAA	.	93.0	25.0	120.0	0.0	.	.	.	.	Atlas-SNP
MYO3B	140469	hgsc.bcm.edu	hg19	2	171323102	171323102	+	Silent	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	MYO3B	NM_001083615	exon25	c.C2895A	p.A965A	AGAGGCCCTGCAG	.	85.0	29.0	104.0	0.0	.	320	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179639715	179639715	+	Silent	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	TTN	NM_001267550	exon29	c.T6723A	p.A2241A	ATCTTCAGCATCA	.	125.0	65.0	126.0	0.0	.	18412	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196822068	196822068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DNAH7	NM_018897	exon19	c.A2995G	p.I999V	ACATAATGTCTGG	.	315.0	130.0	386.0	1.0	.	512	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222301170	222301170	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	EPHA4	NM_004438	exon13	c.T2295A	p.F765L	CATGCCAAAATCA	.	78.0	33.0	91.0	0.0	.	263	.	.	Atlas-SNP
ANKMY1	51281	hgsc.bcm.edu	hg19	2	241463346	241463346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	ANKMY1	NM_016552	exon7	c.C1521A	p.S507R	GTCGAAGCTGCTG	.	49.0	24.0	56.0	0.0	.	112	.	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130290002	130290002	+	Silent	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	COL6A6	NM_001102608	exon6	c.C2742T	p.V914V	CCAAGTCCTCATT	.	98.0	52.0	128.0	0.0	.	497	.	.	Atlas-SNP
CPA3	1359	hgsc.bcm.edu	hg19	3	148596536	148596536	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	CPA3,NS,carcinoma,0,1	CPA3	NM_001870	exon5	c.474+1G>A	.	CTGAAGGTAAAAA	.	121.0	58.0	142.0	0.0	.	75	.	.	Atlas-SNP
LOC650293	0	hgsc.bcm.edu	hg19	4	8951938	8951938	+	Silent	SNP	T	T	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	.	NM_001040071	exon1	c.T462A	p.L154L	CAAACTTGCCTGT	.	40.0	11.0	35.0	0.0	.	.	.	.	Atlas-SNP
PROM1	8842	hgsc.bcm.edu	hg19	4	16077499	16077499	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	PROM1	NM_001145847	exon2	c.C31T	p.L11L	GCCCCAGCAGCAA	.	149.0	55.0	136.0	0.0	.	91	.	.	Atlas-SNP
PPARGC1A	10891	hgsc.bcm.edu	hg19	4	23803848	23803848	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	PPARGC1A	NM_013261	exon11	c.G2140T	p.G714X	CTCACCCATCATC	.	160.0	39.0	133.0	0.0	.	129	.	.	Atlas-SNP
CWH43	80157	hgsc.bcm.edu	hg19	4	48990664	48990664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CWH43	NM_025087	exon2	c.C214A	p.L72M	CTAACCCTGCTGA	.	146.0	39.0	144.0	0.0	.	101	.	.	Atlas-SNP
DMP1	1758	hgsc.bcm.edu	hg19	4	88583327	88583327	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DMP1	NM_004407	exon6	c.A397T	p.R133X	AACTCCAGACTGG	.	96.0	70.0	171.0	0.0	.	72	.	.	Atlas-SNP
INTS12	57117	hgsc.bcm.edu	hg19	4	106614468	106614468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	INTS12	NM_020395	exon5	c.G485A	p.C162Y	ACAACGCAGGCCA	.	75.0	55.0	210.0	0.0	.	35	.	.	Atlas-SNP
EGF	1950	hgsc.bcm.edu	hg19	4	110885652	110885652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	EGF	NM_001963	exon10	c.G1534A	p.G512R	CAGATGGGAATGG	.	104.0	80.0	229.0	0.0	.	113	.	.	Atlas-SNP
ALPK1	80216	hgsc.bcm.edu	hg19	4	113332992	113332992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	ALPK1	NM_001102406	exon5	c.A286T	p.R96W	TCCCTGAGGGCCT	.	45.0	33.0	72.0	0.0	.	125	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19473795	19473795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	CDH18_ENST00000507958,NS,adenocarcinoma,-1,2	CDH18	NM_004934	exon13	c.G1913T	p.R638L	TTGCTGCGCCTCA	.	33.0	10.0	38.0	0.0	.	561	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19473796	19473796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	CDH18_ENST00000507958,NS,adenocarcinoma,0,4	CDH18	NM_004934	exon13	c.C1912T	p.R638C	TGCTGCGCCTCAG	.	33.0	10.0	38.0	0.0	.	561	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26902662	26902662	+	Silent	SNP	T	T	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CDH9	NM_016279	exon7	c.A1176T	p.V392V	TTCATCTACTTCT	.	71.0	35.0	66.0	0.0	.	305	.	.	Atlas-SNP
CAST	831	hgsc.bcm.edu	hg19	5	96031603	96031603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CAST	NM_001042440	exon3	c.G202A	p.A68T	GCCTCGGCCACCA	.	326.0	148.0	419.0	0.0	.	58	.	.	Atlas-SNP
ST8SIA4	7903	hgsc.bcm.edu	hg19	5	100222044	100222044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	ST8SIA4	NM_175052	exon3	c.G506T	p.X169L	AAAGCTCACCTTA	.	114.0	47.0	150.0	0.0	.	77	.	.	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112179352	112179352	+	Silent	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	APC	NM_001127510	exon17	c.A8061T	p.S2687S	TGTTTCAGAAAAG	.	125.0	63.0	164.0	0.0	.	4158	.	.	Atlas-SNP
PROB1	389333	hgsc.bcm.edu	hg19	5	138728542	138728542	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	.	NM_001161546	exon1	c.C2229T	p.R743R	GGGCCGGCGACCC	.	80.0	6.0	101.0	0.0	.	.	.	.	Atlas-SNP
GM2A	2760	hgsc.bcm.edu	hg19	5	150646346	150646346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	GM2A	NM_001167607	exon3	c.A298G	p.T100A	CCATGCACAGACT	.	47.0	16.0	65.0	0.0	.	24	.	.	Atlas-SNP
SYCP2L	221711	hgsc.bcm.edu	hg19	6	10924796	10924796	+	Silent	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	SYCP2L	NM_001040274	exon15	c.C1140A	p.V380V	AGAAGTCATGAAA	.	147.0	28.0	85.0	0.0	.	101	.	.	Atlas-SNP
MLN	4295	hgsc.bcm.edu	hg19	6	33766966	33766966	+	Silent	SNP	G	G	T	rs188344611	bycluster;by1000genomes;alternate_allele	TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	MLN	NM_002418	exon3	c.C150A	p.S50S	ACTCAGGGATTTC	.	190.0	40.0	127.0	0.0	.	16	.	G|1.000;A|0.000	Atlas-SNP
STK38	11329	hgsc.bcm.edu	hg19	6	36485547	36485547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	STK38	NM_007271	exon6	c.A461G	p.Y154C	AAACTATAGAACA	.	212.0	50.0	103.0	0.0	.	54	.	.	Atlas-SNP
TREML4	285852	hgsc.bcm.edu	hg19	6	41196780	41196780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	TREML4	NM_198153	exon2	c.C392A	p.P131Q	TGTCTCCAGGTGA	.	120.0	16.0	53.0	0.0	.	25	.	.	Atlas-SNP
ABCC10	89845	hgsc.bcm.edu	hg19	6	43417802	43417802	+	Silent	SNP	A	A	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	ABCC10	NM_001198934	exon22	c.A4452C	p.G1484G	GCAGGGAGTCCCT	.	288.0	58.0	185.0	0.0	.	118	.	.	Atlas-SNP
AMPH	273	hgsc.bcm.edu	hg19	7	38505102	38505102	+	Missense_Mutation	SNP	G	G	C	rs146457438	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	AMPH,colon,carcinoma,0,2	AMPH	NM_139316	exon9	c.C714G	p.H238Q	GTCGGCGTGCTGG	.	100.0	48.0	124.0	0.0	.	157	.	G|0.999;A|0.001	Atlas-SNP
RFC2	5982	hgsc.bcm.edu	hg19	7	73657534	73657534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	RFC2	NM_181471	exon6	c.A477C	p.E159D	GTAGATTTCCATG	.	86.0	43.0	107.0	0.0	.	27	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	hg19	7	82996922	82996922	+	Missense_Mutation	SNP	T	T	A	rs368305214	alternate_allele	TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	SEMA3E	NM_012431	exon17	c.A2308T	p.R770W	TGTGCCTGGGCAG	.	189.0	69.0	267.0	0.0	.	125	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103191647	103191647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	RELN	NM_173054	exon41	c.C6169A	p.L2057I	AGCAGAGGGGCAG	.	55.0	24.0	68.0	0.0	.	593	.	.	Atlas-SNP
PRKAR2B	5577	hgsc.bcm.edu	hg19	7	106781380	106781380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	PRKAR2B	NM_002736	exon5	c.A569G	p.N190S	GTGACAACTTTTA	.	144.0	54.0	193.0	0.0	.	34	.	.	Atlas-SNP
GRM8	2918	hgsc.bcm.edu	hg19	7	126542720	126542720	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	GRM8	NM_000845	exon5	c.C1032G	p.Y344X	TCTAAAGTATCGA	.	95.0	50.0	103.0	0.0	.	377	.	.	Atlas-SNP
CHMP7	91782	hgsc.bcm.edu	hg19	8	23104313	23104313	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CHMP7	NM_152272	exon2	c.C105G	p.F35L	CCTGTTCTCCGCT	.	168.0	62.0	172.0	0.0	.	34	.	.	Atlas-SNP
FOXD4	2298	hgsc.bcm.edu	hg19	9	116958	116958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	FOXD4	NM_207305	exon1	c.C1162T	p.H388Y	ACAGGTGCCCGCC	.	487.0	109.0	543.0	1.0	.	75	.	.	Atlas-SNP
INSL4	3641	hgsc.bcm.edu	hg19	9	5233727	5233727	+	Silent	SNP	A	A	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	INSL4	NM_002195	exon2	c.A270G	p.S90S	TTTGTCACCAGAG	.	87.0	41.0	115.0	0.0	.	20	.	.	Atlas-SNP
NFIB	4781	hgsc.bcm.edu	hg19	9	14113035	14113035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	NFIB	NM_001190737	exon10	c.T1430C	p.L477P	GGGCTTAGTCCCA	.	96.0	4.0	113.0	0.0	.	91	.	.	Atlas-SNP
TTC16	158248	hgsc.bcm.edu	hg19	9	130485486	130485486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	TTC16	NM_144965	exon7	c.C746T	p.A249V	TGGTGGCCCAGGC	.	56.0	29.0	68.0	0.0	.	55	.	.	Atlas-SNP
NOTCH1	4851	hgsc.bcm.edu	hg19	9	139390565	139390565	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	NOTCH1	NM_017617	exon34	c.C7626G	p.S2542R	CTGCATGCTGGTG	.	61.0	20.0	100.0	0.0	.	1980	.	.	Atlas-SNP
OR51E2	81285	hgsc.bcm.edu	hg19	11	4703440	4703440	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	OR51E2	NM_030774	exon2	c.T502G	p.C168G	AGTGGCAGAAGGC	.	90.0	39.0	94.0	0.0	.	77	.	.	Atlas-SNP
E2F8	79733	hgsc.bcm.edu	hg19	11	19256370	19256370	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	E2F8	NM_001256372	exon5	c.T687A	p.H229Q	GATGATATGATCC	.	111.0	39.0	130.0	0.0	.	84	.	.	Atlas-SNP
HRASLS2	54979	hgsc.bcm.edu	hg19	11	63325963	63325963	+	Silent	SNP	T	T	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	HRASLS2	NM_017878	exon3	c.A288C	p.A96A	CTCCTCTGCCCGC	.	124.0	68.0	138.0	0.0	.	14	.	.	Atlas-SNP
FGF3	2248	hgsc.bcm.edu	hg19	11	69625279	69625279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	FGF3	NM_005247	exon3	c.A514G	p.T172A	TCTGTGTGCGGCG	.	197.0	88.0	188.0	0.0	.	27	.	.	Atlas-SNP
LRRC32	2615	hgsc.bcm.edu	hg19	11	76376969	76376969	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	LRRC32	NM_005512	exon2	c.C30T	p.A10A	CAGCAGGGCCAGG	.	60.0	15.0	64.0	0.0	.	74	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78419516	78419516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	.	NM_001098816	exon27	c.A4099G	p.T1367A	TCATGGTGCCATC	.	89.0	40.0	107.0	0.0	.	.	.	.	Atlas-SNP
C11orf82	220042	hgsc.bcm.edu	hg19	11	82643852	82643852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	C11orf82	NM_145018	exon6	c.G1472A	p.S491N	ACTGTAGCAAAGA	.	58.0	27.0	61.0	0.0	.	71	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92577113	92577113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	FAT3	NM_001008781	exon18	c.G10580A	p.G3527D	ATTCAGGCAAACC	.	108.0	54.0	123.0	0.0	.	1822	.	.	Atlas-SNP
C11orf65	160140	hgsc.bcm.edu	hg19	11	108264021	108264021	+	Silent	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	C11orf65	NM_152587	exon7	c.A645G	p.R215R	AAAAGCTCTAATC	.	161.0	64.0	183.0	0.0	.	29	.	.	Atlas-SNP
KCNA5	3741	hgsc.bcm.edu	hg19	12	5154614	5154614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	KCNA5,NS,carcinoma,0,1	KCNA5	NM_002234	exon1	c.T1301A	p.L434Q	GGGAGCTGGGGCT	.	111.0	35.0	119.0	0.0	.	138	.	.	Atlas-SNP
CCER1	196477	hgsc.bcm.edu	hg19	12	91347318	91347318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	.	NM_152638	exon1	c.C1202T	p.A401V	TCCTGTGCCATGA	.	84.0	32.0	101.0	0.0	.	.	.	.	Atlas-SNP
BTBD11	121551	hgsc.bcm.edu	hg19	12	108029088	108029088	+	Silent	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	BTBD11	NM_001018072	exon12	c.C2658T	p.C886C	GCTGTGCGTCATC	.	56.0	25.0	70.0	0.0	.	122	.	.	Atlas-SNP
LRRC43	254050	hgsc.bcm.edu	hg19	12	122677397	122677397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	LRRC43	NM_001098519	exon7	c.G1195A	p.E399K	GAGGTCGAAGGGT	.	188.0	85.0	263.0	0.0	.	105	.	.	Atlas-SNP
HMGB1	3146	hgsc.bcm.edu	hg19	13	31035627	31035627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	HMGB1	NM_002128	exon5	c.A515C	p.K172T	CCCTTTTTTGCTG	.	144.0	69.0	170.0	0.0	.	21	.	.	Atlas-SNP
MAB21L1	4081	hgsc.bcm.edu	hg19	13	36049542	36049542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	MAB21L1	NM_005584	exon1	c.G734A	p.G245D	CTGCAGCCCCCCA	.	61.0	29.0	70.0	0.0	.	52	.	.	Atlas-SNP
PRKD1	5587	hgsc.bcm.edu	hg19	14	30047494	30047494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	PRKD1	NM_002742	exon17	c.A2507T	p.H836L	CAAGGGTGGCTCA	.	54.0	20.0	65.0	0.0	.	316	.	.	Atlas-SNP
CDC42BPB	9578	hgsc.bcm.edu	hg19	14	103410434	103410434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CDC42BPB	NM_006035	exon30	c.G4202A	p.G1401E	CCGTCCCCCTGGA	.	81.0	35.0	104.0	0.0	.	123	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	42034793	42034793	+	Silent	SNP	A	A	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	MGA	NM_001164273	exon15	c.A4635G	p.K1545K	GAGTAAAGTTGGA	.	73.0	41.0	79.0	0.0	.	264	.	.	Atlas-SNP
MAP1A	4130	hgsc.bcm.edu	hg19	15	43821446	43821446	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	MAP1A	NM_002373	exon4	c.T7775A	p.V2592E	GGAGAGTAGAGAG	.	102.0	48.0	126.0	0.0	.	189	.	.	Atlas-SNP
FRMD5	84978	hgsc.bcm.edu	hg19	15	44487159	44487159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	FRMD5	NM_032892	exon1	c.A94G	p.T32A	GGATGGTGCAGGT	.	43.0	15.0	42.0	0.0	.	45	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48056061	48056061	+	Silent	SNP	C	C	A	rs374731818	alternate_allele	TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	SEMA6D	NM_153617	exon10	c.C762A	p.R254R	TTCCCGCGTGGCC	.	127.0	54.0	156.0	0.0	.	322	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48704920	48704920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	FBN1	NM_000138	exon65	c.G8072A	p.G2691D	CCCATGCCCATTC	.	85.0	27.0	120.0	0.0	.	310	.	.	Atlas-SNP
MYO5C	55930	hgsc.bcm.edu	hg19	15	52497232	52497232	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	MYO5C	NM_018728	exon38	c.C4650T	p.S1550S	CAGGACGGAGGTC	.	97.0	42.0	78.0	0.0	.	162	.	.	Atlas-SNP
STRA6	64220	hgsc.bcm.edu	hg19	15	74494511	74494511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	STRA6	NM_001199042	exon2	c.A215G	p.E72G	TGGAGCTCCTCGC	.	43.0	19.0	74.0	0.0	.	66	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	348175	348175	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	AXIN1	NM_181050	exon6	c.G1331A	p.W444X	TGGTGCCAAGCGG	.	34.0	29.0	63.0	0.0	.	290	.	.	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	hg19	16	3304270	3304270	+	Silent	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	MEFV	NM_000243	exon2	c.G798A	p.K266K	AGCTGTCTTTTCC	.	52.0	46.0	76.0	0.0	.	170	.	.	Atlas-SNP
XYLT1	64131	hgsc.bcm.edu	hg19	16	17228387	17228387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	XYLT1	NM_022166	exon9	c.G1970T	p.R657L	CCCAGGCGGGCAA	.	24.0	19.0	64.0	0.0	.	147	.	.	Atlas-SNP
EVPLL	645027	hgsc.bcm.edu	hg19	17	18284693	18284693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	EVPLL	NM_001145127	exon3	c.A76T	p.S26C	CTGAACAGTGAGC	.	60.0	25.0	93.0	0.0	.	10	.	.	Atlas-SNP
C17orf75	64149	hgsc.bcm.edu	hg19	17	30665304	30665304	+	Silent	SNP	T	T	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	C17orf75	NM_022344	exon4	c.A414C	p.T138T	CGTTACTGTTTCA	.	231.0	93.0	282.0	0.0	.	23	.	.	Atlas-SNP
KRT36	8689	hgsc.bcm.edu	hg19	17	39644652	39644652	+	Splice_Site	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	KRT36	NM_003771	exon4	c.543-1G>A	.	TCATACCTGCACA	.	53.0	25.0	52.0	0.0	.	52	.	.	Atlas-SNP
TLK2	11011	hgsc.bcm.edu	hg19	17	60558480	60558480	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	TLK2	.	.	.	.	TTTTTCAGCAGAA	.	79.0	35.0	69.0	0.0	.	223	.	.	Atlas-SNP
AXIN2	8313	hgsc.bcm.edu	hg19	17	63534461	63534461	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	AXIN2	NM_004655	exon5	c.A1060T	p.R354X	GGGTTCTCTACAG	.	91.0	44.0	104.0	0.0	.	92	.	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	hg19	17	71361525	71361525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	SDK2	NM_001144952	exon38	c.C5177T	p.A1726V	CTGGGAGCGCTGG	.	70.0	15.0	119.0	0.0	.	219	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76497424	76497424	+	Silent	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DNAH17	NM_173628	exon35	c.G5325T	p.V1775V	ACTCTCCACCTGC	.	37.0	18.0	44.0	0.0	.	347	.	.	Atlas-SNP
DSC1	1823	hgsc.bcm.edu	hg19	18	28720171	28720171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DSC1	NM_004948	exon10	c.A1354G	p.T452A	ACATTGTAGGAGT	.	107.0	43.0	163.0	0.0	.	240	.	.	Atlas-SNP
ATP8B3	148229	hgsc.bcm.edu	hg19	19	1784853	1784853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	ATP8B3	NM_138813	exon28	c.G3625C	p.V1209L	AGATGACTCGGAG	.	96.0	47.0	107.0	0.0	.	108	.	.	Atlas-SNP
CD70	970	hgsc.bcm.edu	hg19	19	6586380	6586380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CD70	NM_001252	exon3	c.G233T	p.G78V	GCTGGGCCCCCCT	.	40.0	22.0	44.0	0.0	.	24	.	.	Atlas-SNP
OR7G1	125962	hgsc.bcm.edu	hg19	19	9225702	9225702	+	Silent	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	OR7G1	NM_001005192	exon1	c.T738A	p.S246S	AAAAACAGAGAGG	.	136.0	50.0	186.0	0.0	.	53	.	.	Atlas-SNP
IL27RA	9466	hgsc.bcm.edu	hg19	19	14157256	14157256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	IL27RA	NM_004843	exon8	c.C967T	p.P323S	TCTGCCCCCCGTA	.	63.0	36.0	88.0	0.0	.	56	.	.	Atlas-SNP
EMR2	30817	hgsc.bcm.edu	hg19	19	14863218	14863218	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	EMR2	NM_013447	exon15	c.C1711T	p.L571L	GATGCAGTGAGGT	.	152.0	61.0	172.0	0.0	.	99	.	.	Atlas-SNP
OR7C1	26664	hgsc.bcm.edu	hg19	19	14910799	14910799	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	OR7C1	NM_198944	exon1	c.C150T	p.C50C	GTCTGAGCATATG	.	199.0	93.0	248.0	0.0	.	58	.	.	Atlas-SNP
ZNF257	113835	hgsc.bcm.edu	hg19	19	22256300	22256300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	ZNF257	NM_033468	exon3	c.A160G	p.T54A	CTGATCACCTGTC	.	89.0	44.0	79.0	0.0	.	156	.	.	Atlas-SNP
PSG6	5675	hgsc.bcm.edu	hg19	19	43414998	43414998	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	PSG6	NM_001031850	exon3	c.A440T	p.K147M	GAGGGCTTGGGAG	.	65.0	36.0	93.0	0.0	.	89	.	.	Atlas-SNP
DMPK	1760	hgsc.bcm.edu	hg19	19	46282568	46282568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DMPK	NM_001081563	exon3	c.G416A	p.R139Q	ATCCACCGCCGGT	.	66.0	32.0	119.0	0.0	.	74	.	.	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48201917	48201917	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	GLTSCR1	NM_015711	exon12	c.A3275T	p.Q1092L	AACACCAGGGCTC	.	73.0	31.0	92.0	0.0	.	79	.	.	Atlas-SNP
BIRC8	112401	hgsc.bcm.edu	hg19	19	53793038	53793038	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	BIRC8	NM_033341	exon1	c.T590G	p.I197S	ACAGCGATATGTC	.	134.0	46.0	139.0	0.0	.	54	.	.	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	hg19	19	54327156	54327156	+	Silent	SNP	T	T	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	NLRP12	NM_144687	exon1	c.G273T	p.L91L	GTCCTCTCTCTGT	.	84.0	35.0	89.0	0.0	.	236	.	.	Atlas-SNP
BFSP1	631	hgsc.bcm.edu	hg19	20	17489605	17489605	+	Silent	SNP	G	G	T	rs141217196	alternate_allele	TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	BFSP1	NM_001195	exon5	c.C664A	p.R222R	GACTCCGCAGGGC	.	141.0	94.0	109.0	0.0	.	55	.	G|1.000;A|0.000	Atlas-SNP
DZANK1	55184	hgsc.bcm.edu	hg19	20	18433306	18433306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DZANK1	NM_001099407	exon6	c.G496A	p.A166T	CATAAGCTGGGAT	.	207.0	56.0	176.0	0.0	.	65	.	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34067158	34067158	+	Missense_Mutation	SNP	G	G	A	rs376769176		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CEP250	NM_007186	exon18	c.G2197A	p.A733T	AAGGAGGCCCTAG	.	226.0	69.0	161.0	0.0	.	141	.	.	Atlas-SNP
ZBTB46	140685	hgsc.bcm.edu	hg19	20	62421227	62421227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	ZBTB46	NM_025224	exon2	c.C884A	p.P295Q	GGCACCGGGGAGC	.	56.0	18.0	39.0	0.0	.	72	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41725592	41725592	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DSCAM	NM_001271534	exon5	c.C734G	p.P245R	TTGCAAGGCAGCT	.	51.0	19.0	74.0	0.0	.	347	.	.	Atlas-SNP
LZTR1	8216	hgsc.bcm.edu	hg19	22	21348307	21348307	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	LZTR1	NM_006767	exon13	c.A1448T	p.Q483L	TGGCCCAGGTGAG	.	99.0	37.0	129.0	0.0	.	99	.	.	Atlas-SNP
EIF4ENIF1	56478	hgsc.bcm.edu	hg19	22	31851912	31851912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	EIF4ENIF1	NM_019843	exon8	c.C1025T	p.S342F	GGGTTAGAGAACC	.	140.0	55.0	148.0	0.0	.	80	.	.	Atlas-SNP
KAL1	3730	hgsc.bcm.edu	hg19	X	8667788	8667788	+	Splice_Site	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	KAL1	NM_000216	exon3	c.208-2A>G	.	TTGTTCTGCAAAA	.	683.0	242.0	866.0	0.0	.	78	.	.	Atlas-SNP
SCML2	10389	hgsc.bcm.edu	hg19	X	18276345	18276345	+	Silent	SNP	A	A	G	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	SCML2	NM_006089	exon10	c.T1092C	p.H364H	GTTTCCATGTTTG	.	314.0	135.0	413.0	0.0	.	81	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20183141	20183141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	RPS6KA3	NM_004586	exon18	c.A1640G	p.Y547C	TCCACATAAAGAA	.	348.0	145.0	456.0	0.0	.	110	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20213230	20213230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	RPS6KA3	NM_004586	exon5	c.A359G	p.D120G	AAGATATCACGTT	.	167.0	61.0	201.0	0.0	.	110	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32663083	32663083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	DMD	NM_004006	exon10	c.G1147A	p.E383K	TTACCTCATGAGT	.	134.0	62.0	164.0	0.0	.	2127	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53579727	53579727	+	Silent	SNP	A	A	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	HUWE1	NM_031407	exon62	c.T8622A	p.T2874T	TGCTGAAGTGTCA	.	206.0	10.0	259.0	0.0	.	724	.	.	Atlas-SNP
CXorf56	63932	hgsc.bcm.edu	hg19	X	118675326	118675326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	CXorf56	NM_022101	exon6	c.C571T	p.R191C	CTTTGCGCTCCAG	.	38.0	11.0	37.0	0.0	.	26	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15455	15455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	.	ENST00000361789	exon1	c.C709A	p.L237I	TTCCTTCTCTCCT	.	37.0	10.0	21.0	0.0	.	.	.	.	Atlas-SNP
SLC6A1	6529	hgsc.bcm.edu	hg19	3	11064071	11064089	+	Frame_Shift_Del	DEL	CGCTGGCCACTGGCCATCA	CGCTGGCCACTGGCCATCA	-	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	CGCTGGCCACTGGCCATCA	CGCTGGCCACTGGCCATCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	SLC6A1	NM_003042	exon7	c.630_648del	p.210_216del	.	.	86.0	22.0	130.0	0.0	.	88	.	.	Atlas-INDEL
BRD7	29117	hgsc.bcm.edu	hg19	16	50357561	50357582	+	Frame_Shift_Del	DEL	TGCCATGACATACGGATAATCT	TGCCATGACATACGGATAATCT	-	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	TGCCATGACATACGGATAATCT	TGCCATGACATACGGATAATCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	BRD7,NS,carcinoma,0,2	BRD7	NM_013263	exon12	c.1360_1381del	p.454_461del	.	.	34.0	22.0	96.0	0.0	.	61	.	.	Atlas-INDEL
IREB2	3658	hgsc.bcm.edu	hg19	15	78768702	78768703	+	Splice_Site	INS	-	-	T	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	IREB2	NM_004136	exon9	c.1195+1->T	.	.	.	84.0	33.0	106.0	0.0	.	106	.	.	Atlas-INDEL
ZNF33A	7581	hgsc.bcm.edu	hg19	10	38344303	38344306	+	Frame_Shift_Del	DEL	GTGT	GTGT	-	novel		TCGA-ED-A8O5-01A-11D-A35Z-10	TCGA-ED-A8O5-10A-01D-A35Z-10	GTGT	GTGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a476994e-8feb-4689-b1fd-649179e672d6	c1d18b80-545a-4fe7-9486-6b7e8f52c426	.	ZNF33A	NM_006954	exon5	c.1250_1253del	p.417_418del	.	.	105.0	45.0	108.0	0.0	.	103	.	.	Atlas-INDEL