Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm HMCN1 83872 hgsc.bcm.edu hg19 1 185897698 185897698 + Nonsense_Mutation SNP T T G novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . HMCN1 NM_031935 exon10 c.T1451G p.L484X TGAACTTAGATAT . 81.0 8.0 49.0 0.0 . 797 . . Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240286619 240286619 + Missense_Mutation SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . FMN2 NM_020066 exon2 c.G1756A p.A586T CAGAATGCCCAGA . 95.0 82.0 43.0 0.0 . 451 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32641025 32641025 + Missense_Mutation SNP T T C novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . BIRC6 NM_016252 exon10 c.T2666C p.F889S ATGGTTTTGAGAG . 184.0 40.0 144.0 0.0 . 838 . . Atlas-SNP NRXN1 9378 hgsc.bcm.edu hg19 2 51255367 51255367 + Nonsense_Mutation SNP G G T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . NRXN1 NM_004801 exon2 c.C45A p.C15X CGAGAGGCACAGA . 17.0 9.0 16.0 0.0 . 1118 . . Atlas-SNP HECW2 57520 hgsc.bcm.edu hg19 2 197184307 197184307 + Missense_Mutation SNP C C T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . HECW2 NM_020760 exon9 c.G1307A p.C436Y TCAGAGCAGGTCG . 85.0 29.0 87.0 0.0 . 239 . . Atlas-SNP IL17RD 54756 hgsc.bcm.edu hg19 3 57130461 57130461 + Missense_Mutation SNP C C T rs146776354 TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . IL17RD NM_017563 exon13 c.G2180A p.R727H TAGCTGCGGCAAC . 120.0 29.0 118.0 0.0 . 93 . C|1.000;T|0.000 Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130293202 130293202 + Missense_Mutation SNP A A G novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . COL6A6 NM_001102608 exon7 c.A3380G p.H1127R TGAGACACAGAGG . 183.0 74.0 171.0 0.0 . 497 . . Atlas-SNP IRF2 3660 hgsc.bcm.edu hg19 4 185339323 185339323 + Nonsense_Mutation SNP T T A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 IRF2,NS,carcinoma,0,1 IRF2 NM_002199 exon5 c.A409T p.K137X TTACCTTGATGTG . 94.0 65.0 183.0 0.0 . 53 . . Atlas-SNP SNX14 57231 hgsc.bcm.edu hg19 6 86223594 86223594 + Silent SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . SNX14 NM_153816 exon26 c.C2577T p.N859N TTCAGTGTTTTCA . 39.0 5.0 48.0 0.0 . 58 . . Atlas-SNP CLDN20 49861 hgsc.bcm.edu hg19 6 155597357 155597357 + Missense_Mutation SNP C C A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . CLDN20 NM_001001346 exon2 c.C504A p.F168L CGGATTCATTTCT . 141.0 51.0 147.0 0.0 . 10 . . Atlas-SNP KIF20B 9585 hgsc.bcm.edu hg19 10 91498042 91498042 + Silent SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . KIF20B NM_016195 exon20 c.G3324A p.A1108A GAGAGCGCTTTCA . 95.0 36.0 102.0 0.0 . 191 . . Atlas-SNP DCLRE1A 9937 hgsc.bcm.edu hg19 10 115602174 115602174 + Missense_Mutation SNP C C A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . DCLRE1A NM_014881 exon6 c.G2593T p.A865S TTACAGCCTCAAA . 98.0 38.0 92.0 0.0 . 80 . . Atlas-SNP OR51S1 119692 hgsc.bcm.edu hg19 11 4869943 4869943 + Missense_Mutation SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . OR51S1 NM_001004758 exon1 c.C496T p.P166S GCAGGGGCAGATG . 93.0 46.0 82.0 0.0 . 83 . . Atlas-SNP OR4C15 81309 hgsc.bcm.edu hg19 11 55322154 55322154 + Silent SNP G G C novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 OR4C15,NS,neuroblastoma,0,1 OR4C15 NM_001001920 exon1 c.G372C p.A124A GGATGCGTGCTTC . 62.0 5.0 41.0 0.0 . 145 . . Atlas-SNP OR9G9 504191 hgsc.bcm.edu hg19 11 56468353 56468353 + Missense_Mutation SNP T T A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . . NM_001013358 exon1 c.T490A p.S164T ACGTTTTCCTTTA . 138.0 37.0 156.0 0.0 . . . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103029663 103029663 + Missense_Mutation SNP T T A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . DYNC2H1 NM_001377 exon28 c.T4285A p.F1429I CCAAGATTTTATT . 167.0 60.0 214.0 0.0 . 246 . . Atlas-SNP SORL1 6653 hgsc.bcm.edu hg19 11 121476237 121476237 + Silent SNP A A G novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . SORL1 NM_003105 exon35 c.A4905G p.A1635A CAAGGCACACAAC . 138.0 70.0 136.0 0.0 . 218 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49443599 49443599 + Missense_Mutation SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 MLL2_ENST00000301067,caecum,carcinoma,+2,2 MLL2 NM_003482 exon11 c.C3772T p.R1258W AGAGCCGTAGGGA . 146.0 62.0 193.0 0.0 . 1173 . . Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49448415 49448415 + Missense_Mutation SNP G G T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . MLL2 NM_003482 exon3 c.C296A p.P99H CCCCCAGGGGACA . 118.0 5.0 142.0 0.0 . 1173 . . Atlas-SNP PCDH17 27253 hgsc.bcm.edu hg19 13 58299287 58299287 + Silent SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . PCDH17 NM_001040429 exon4 c.G3339A p.E1113E CAGTGAGATGGGT . 141.0 56.0 107.0 0.0 . 304 . . Atlas-SNP RTL1 388015 hgsc.bcm.edu hg19 14 101350343 101350343 + Missense_Mutation SNP G G T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . RTL1 NM_001134888 exon1 c.C783A p.S261R CAGGGGGCTGTTT . 52.0 27.0 67.0 0.0 . 120 . . Atlas-SNP HAUS2 55142 hgsc.bcm.edu hg19 15 42858992 42858992 + Missense_Mutation SNP T T C novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . HAUS2 NM_018097 exon6 c.T686C p.V229A TTCATGTCCAAAC . 97.0 4.0 110.0 0.0 . 12 . . Atlas-SNP CDAN1 146059 hgsc.bcm.edu hg19 15 43027807 43027807 + Missense_Mutation SNP G G A rs371090455 TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . CDAN1 NM_138477 exon4 c.C844T p.R282W CTGTCCGGCTGGG . 95.0 23.0 122.0 0.0 . 70 . . Atlas-SNP AP2B1 163 hgsc.bcm.edu hg19 17 33932839 33932839 + Missense_Mutation SNP G G T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . AP2B1 NM_001282 exon4 c.G259T p.A87S ATCATGGCTGTAA . 90.0 34.0 79.0 0.0 . 70 . . Atlas-SNP ONECUT2 9480 hgsc.bcm.edu hg19 18 55103728 55103728 + Silent SNP C C T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . ONECUT2 NM_004852 exon1 c.C780T p.P260P CAGCCCCAACTTC . 68.0 29.0 61.0 0.0 . 42 . . Atlas-SNP ZNF69 7620 hgsc.bcm.edu hg19 19 12015547 12015547 + Missense_Mutation SNP T T C novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . ZNF69 NM_021915 exon4 c.T293C p.L98P ACAGGCTGAACTT . 121.0 11.0 149.0 0.0 . 27 . . Atlas-SNP ZNF676 163223 hgsc.bcm.edu hg19 19 22362861 22362861 + Missense_Mutation SNP C C A rs201300029 bycluster TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 ZNF676,NS,carcinoma,0,3 ZNF676 NM_001001411 exon3 c.G1658T p.R553I TGAATTCTCTTGT . 50.0 7.0 73.0 0.0 . 146 . . Atlas-SNP SCRT2 85508 hgsc.bcm.edu hg19 20 644968 644968 + Silent SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . SCRT2 NM_033129 exon2 c.C271T p.L91L CCGACAGGCTCGA . 30.0 16.0 39.0 0.0 . 16 . . Atlas-SNP MED14 9282 hgsc.bcm.edu hg19 X 40511063 40511063 + Missense_Mutation SNP G G T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . MED14 NM_004229 exon31 c.C4360A p.P1454T TCTATGGACGCCC . 409.0 131.0 505.0 1.0 . 108 . . Atlas-SNP PPP1R3F 89801 hgsc.bcm.edu hg19 X 49138482 49138483 + Frame_Shift_Ins INS - - TAGCCCCCACCTGA novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . PPP1R3F NM_033215 exon3 c.1099_1100insTAGCCCCCACCTGA p.V367_A368delinsVAPTX . . 124.0 10.0 179.0 0.0 . 56 . . Atlas-Indel,Pindel