Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ASAP3 55616 hgsc.bcm.edu hg19 1 23763700 23763700 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . ASAP3 NM_017707 exon14 c.A1265T p.H422L AGGTCGTGCGGCT . 197.0 72.0 123.0 0.0 . 65 . . Atlas-SNP MKNK1 8569 hgsc.bcm.edu hg19 1 47048993 47048993 + Missense_Mutation SNP T T G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . MKNK1 NM_003684 exon3 c.A43C p.S15R CGCTACTGCCCAT . 49.0 18.0 50.0 0.0 . 36 . . Atlas-SNP MOB3C 148932 hgsc.bcm.edu hg19 1 47075833 47075833 + Silent SNP G G T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . MOB3C NM_145279 exon3 c.C618A p.I206I GGTCAGGATCTTG . 91.0 40.0 67.0 0.0 . 1 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152080354 152080354 + Missense_Mutation SNP C C A rs199599922 TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f TCHH,NS,carcinoma,0,1 TCHH NM_007113 exon3 c.G5339T p.R1780L TCCTGGCGGAGCT . 123.0 77.0 58.0 1.0 . 275 . C|0.999;A|0.001 Atlas-SNP INTS3 65123 hgsc.bcm.edu hg19 1 153740305 153740305 + Splice_Site SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . INTS3 NM_023015 exon21 c.2244+2T>A . CAGAGGTCAGTGC . 66.0 20.0 21.0 0.0 . 83 . . Atlas-SNP DCST1 149095 hgsc.bcm.edu hg19 1 155015937 155015937 + Missense_Mutation SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . DCST1 NM_152494 exon10 c.G1124A p.G375E CCCTGGGGCTGCT . 171.0 56.0 68.0 0.0 . 69 . . Atlas-SNP LAMC2 3918 hgsc.bcm.edu hg19 1 183190045 183190045 + Missense_Mutation SNP C C A rs184817147 bycluster;by1000genomes;alternate_allele TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f LAMC2,caecum,carcinoma,0,1 LAMC2 NM_005562 exon5 c.C589A p.R197S AGCTGCCGCAGCT . 323.0 87.0 160.0 1.0 . 113 . C|0.998;T|0.002 Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216019200 216019200 + Silent SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f USH2A,NS,carcinoma,0,1 USH2A NM_206933 exon45 c.C9021T p.N3007N TGCACTGTTGATG . 254.0 76.0 151.0 0.0 . 1168 . . Atlas-SNP TBCE 6905 hgsc.bcm.edu hg19 1 235605132 235605132 + Missense_Mutation SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . TBCE NM_003193 exon14 c.A1274G p.Y425C CAGAATATGGTGC . 128.0 39.0 100.0 0.0 . 40 . . Atlas-SNP KIF26B 55083 hgsc.bcm.edu hg19 1 245851773 245851773 + Missense_Mutation SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . KIF26B NM_018012 exon12 c.G5488A p.E1830K GAGGCGGAGGCGC . 32.0 10.0 6.0 0.0 . 343 . . Atlas-SNP DDX1 1653 hgsc.bcm.edu hg19 2 15737583 15737583 + Missense_Mutation SNP A A C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . DDX1 NM_004939 exon5 c.A247C p.T83P ATTAAAACTGGTG . 213.0 80.0 182.0 0.0 . 70 . . Atlas-SNP CRIM1 51232 hgsc.bcm.edu hg19 2 36749317 36749317 + Silent SNP A A T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . CRIM1 NM_016441 exon13 c.A2289T p.A763A CCTGGCAGCTGAG . 209.0 84.0 178.0 0.0 . 88 . . Atlas-SNP SOS1 6654 hgsc.bcm.edu hg19 2 39239378 39239378 + Missense_Mutation SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . SOS1 NM_005633 exon14 c.C2279T p.T760I TCAACTGTGGGAG . 105.0 8.0 105.0 0.0 . 134 . . Atlas-SNP FAM178B 51252 hgsc.bcm.edu hg19 2 97637903 97637903 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . FAM178B NM_001122646 exon3 c.A299T p.Q100L GGTGCCTGTATCT . 368.0 153.0 252.0 0.0 . 35 . . Atlas-SNP ANAPC1 64682 hgsc.bcm.edu hg19 2 112601156 112601156 + Missense_Mutation SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . ANAPC1 NM_022662 exon17 c.A1873G p.I625V ACTTAATTGCTTG . 140.0 54.0 103.0 0.0 . 116 . . Atlas-SNP IFIH1 64135 hgsc.bcm.edu hg19 2 163139081 163139081 + Silent SNP C C A rs180798633 bycluster;by1000genomes;alternate_allele TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . IFIH1 NM_022168 exon6 c.G1101T p.L367L AACTAGCAGTACC . 85.0 37.0 77.0 0.0 . 102 . C|1.000;G|0.000 Atlas-SNP DHRS9 10170 hgsc.bcm.edu hg19 2 169952088 169952088 + Silent SNP G G T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . DHRS9 NM_005771 exon8 c.G771T p.V257V CTATGTGAACATG . 328.0 125.0 274.0 0.0 . 29 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179639038 179639038 + Missense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . TTN NM_001267550 exon30 c.G6953A p.R2318H CGTCCACGACGAG . 132.0 67.0 88.0 0.0 . 18412 . . Atlas-SNP FAM171B 165215 hgsc.bcm.edu hg19 2 187627077 187627077 + Missense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . FAM171B NM_177454 exon8 c.C2008T p.P670S CCGCATCCCAGAG . 213.0 107.0 193.0 0.0 . 146 . . Atlas-SNP UGT1A1 54658 hgsc.bcm.edu hg19 2 234669658 234669658 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . UGT1A1 NM_000463 exon1 c.T725A p.V242E GAGAGGTGACTGT . 159.0 65.0 132.0 0.0 . 81 . . Atlas-SNP UGT1A1 54658 hgsc.bcm.edu hg19 2 234669659 234669659 + Silent SNP G G C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . UGT1A1 NM_000463 exon1 c.G726C p.V242V AGAGGTGACTGTC . 162.0 66.0 133.0 0.0 . 81 . . Atlas-SNP CXCR7 57007 hgsc.bcm.edu hg19 2 237489983 237489983 + Missense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . CXCR7 NM_020311 exon2 c.C875T p.A292V AGCACGCCCTCTT . 65.0 24.0 41.0 0.0 . 72 . . Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4747976 4747976 + Missense_Mutation SNP C C A rs373619512 alternate_allele TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f ITPR1_ENST00000357086,colon,carcinoma,0,3 ITPR1 NM_001099952 exon37 c.C4756A p.R1586S GCCGCACGCAGGG . 99.0 38.0 80.0 1.0 . 659 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266124 41266124 + Missense_Mutation SNP A A G rs121913412 bycluster TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f CTNNB1,gallbladder,other,0,1 CTNNB1 NM_001098209 exon3 c.A121G p.T41A GCCACTACCACAG . 218.0 127.0 133.0 0.0 . 4904 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266165 41266165 + Missense_Mutation SNP A A C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f CTNNB1,NS,carcinoma,+2,1 CTNNB1 NM_001098209 exon3 c.A162C p.E54D TGAGGAAGAGGAT . 206.0 117.0 138.0 0.0 . 4904 . . Atlas-SNP LZTFL1 54585 hgsc.bcm.edu hg19 3 45872441 45872441 + Silent SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . LZTFL1 NM_020347 exon7 c.A564G p.A188A TTGCAGTGCTTTT . 149.0 40.0 96.0 0.0 . 37 . . Atlas-SNP TMEM115 11070 hgsc.bcm.edu hg19 3 50396097 50396097 + Missense_Mutation SNP A A C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . TMEM115 NM_007024 exon1 c.T398G p.V133G ATACGGACAGTGA . 227.0 138.0 86.0 0.0 . 20 . . Atlas-SNP GNL3 26354 hgsc.bcm.edu hg19 3 52724657 52724657 + Missense_Mutation SNP A A C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . GNL3 NM_014366 exon7 c.A591C p.K197N GAAGAAAGAATTG . 206.0 65.0 133.0 0.0 . 37 . . Atlas-SNP ALDH1L1 10840 hgsc.bcm.edu hg19 3 125833489 125833489 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . ALDH1L1 NM_001270364 exon18 c.A2023T p.S675C CGTTACTTATGGC . 63.0 27.0 68.0 0.0 . 138 . . Atlas-SNP STX18 53407 hgsc.bcm.edu hg19 4 4426917 4426917 + Silent SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . STX18 NM_016930 exon8 c.A735G p.E245E GTTCATTTCACCA . 94.0 4.0 73.0 0.0 . 16 . . Atlas-SNP WDR1 9948 hgsc.bcm.edu hg19 4 10079384 10079384 + Missense_Mutation SNP C C A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . WDR1 NM_017491 exon13 c.G1562T p.G521V GAGTAGCCGTCAG . 165.0 63.0 100.0 0.0 . 93 . . Atlas-SNP CCDC149 91050 hgsc.bcm.edu hg19 4 24839840 24839840 + Nonsense_Mutation SNP G G A rs377438836 TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . CCDC149 NM_173463 exon6 c.C427T p.R143X AGTGTCGCACGCC . 118.0 5.0 77.0 0.0 . 41 . . Atlas-SNP PDGFRA 5156 hgsc.bcm.edu hg19 4 55139876 55139876 + Missense_Mutation SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . PDGFRA NM_006206 exon10 c.G1537A p.E513K AACCGAGAGCTGA . 46.0 4.0 41.0 0.0 . 1583 . . Atlas-SNP ALB 213 hgsc.bcm.edu hg19 4 74275115 74275115 + Missense_Mutation SNP C C G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . ALB NM_000477 exon5 c.C526G p.P176A TATGCCCCGGAAC . 239.0 104.0 203.0 0.0 . 132 . . Atlas-SNP MYOZ2 51778 hgsc.bcm.edu hg19 4 120079231 120079231 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f MYOZ2,NS,malignant_melanoma,0,1 MYOZ2 NM_016599 exon4 c.T301A p.S101T GGTGGTTCGCAGC . 162.0 69.0 133.0 1.0 . 34 . . Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187524333 187524333 + Missense_Mutation SNP T T G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . FAT1 NM_005245 exon19 c.A11347C p.K3783Q TACCTTTGCAGAG . 139.0 55.0 83.0 0.0 . 500 . . Atlas-SNP NAIP 4671 hgsc.bcm.edu hg19 5 70308645 70308645 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . NAIP NM_004536 exon4 c.A98T p.Q33L GCCAACTGAACTG . 147.0 89.0 89.0 0.0 . 38 . . Atlas-SNP TRPC7 57113 hgsc.bcm.edu hg19 5 135651445 135651445 + Missense_Mutation SNP A A C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . TRPC7 NM_020389 exon3 c.T803G p.M268R CATTGCATAGATA . 181.0 14.0 100.0 0.0 . 126 . . Atlas-SNP PCDHB3 56132 hgsc.bcm.edu hg19 5 140480412 140480412 + Missense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . PCDHB3 NM_018937 exon1 c.C179T p.A60V AACTGGCCGCGAG . 255.0 62.0 125.0 0.0 . 208 . . Atlas-SNP NKX2-5 1482 hgsc.bcm.edu hg19 5 172661932 172661932 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . NKX2-5 NM_004387 exon1 c.A155T p.K52M TCTGGCTTGAAGG . 212.0 128.0 100.0 0.0 . 42 . . Atlas-SNP FOXF2 2295 hgsc.bcm.edu hg19 6 1391085 1391085 + Silent SNP G G C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . FOXF2 NM_001452 exon1 c.G903C p.G301G GGCCGGGGGCGGC . 80.0 14.0 22.0 0.0 . 28 . . Atlas-SNP FOXC1 2296 hgsc.bcm.edu hg19 6 1612042 1612042 + Silent SNP G G C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . FOXC1 NM_001453 exon1 c.G1362C p.G454G CGGCGGGGGAGGC . 512.0 24.0 132.0 0.0 . 19 . . Atlas-SNP LYRM4 57128 hgsc.bcm.edu hg19 6 5109701 5109701 + Missense_Mutation SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . LYRM4 NM_020408 exon3 c.A232G p.T78A TGTCAGTTGAATA . 406.0 55.0 134.0 0.0 . 5 . . Atlas-SNP HIST1H2AE 3012 hgsc.bcm.edu hg19 6 26217396 26217396 + Missense_Mutation SNP A A T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . HIST1H2AE NM_021052 exon1 c.A194T p.E65V TCTTAGAGCTAGC . 394.0 301.0 114.0 0.0 . 25 . . Atlas-SNP TTBK1 84630 hgsc.bcm.edu hg19 6 43222808 43222808 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . TTBK1 NM_032538 exon7 c.C598T p.R200X GGGTTTCGAGGAA . 332.0 55.0 91.0 0.0 . 124 . . Atlas-SNP DOPEY1 23033 hgsc.bcm.edu hg19 6 83819950 83819950 + Missense_Mutation SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . DOPEY1 NM_015018 exon6 c.A598G p.I200V CCTGGAATCACGT . 86.0 64.0 137.0 1.0 . 190 . . Atlas-SNP RAPGEF5 9771 hgsc.bcm.edu hg19 7 22179655 22179655 + Silent SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . RAPGEF5 NM_012294 exon21 c.G1806A p.S602S GGTCTGCGACAGT . 440.0 118.0 271.0 0.0 . 96 . . Atlas-SNP CDK13 8621 hgsc.bcm.edu hg19 7 40133994 40133994 + Silent SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . CDK13 NM_003718 exon14 c.A3954G p.E1318E AAGAGAAGGTGGG . 147.0 39.0 63.0 0.0 . 114 . . Atlas-SNP COBL 23242 hgsc.bcm.edu hg19 7 51095425 51095425 + Missense_Mutation SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . COBL NM_015198 exon10 c.A3368G p.K1123R CTGTCCTTCCCTC . 156.0 30.0 82.0 0.0 . 167 . . Atlas-SNP SAMD9 54809 hgsc.bcm.edu hg19 7 92734707 92734707 + Missense_Mutation SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . SAMD9 NM_001193307 exon2 c.T704C p.I235T AAATGAATAGTGC . 172.0 46.0 88.0 0.0 . 239 . . Atlas-SNP NOS3 4846 hgsc.bcm.edu hg19 7 150695672 150695672 + Missense_Mutation SNP C C A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . NOS3 NM_001160111 exon6 c.C720A p.D240E AGGAGACTTCCGA . 137.0 44.0 75.0 0.0 . 131 . . Atlas-SNP WDR60 55112 hgsc.bcm.edu hg19 7 158718939 158718939 + Silent SNP G G T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . WDR60 NM_018051 exon18 c.G2319T p.T773T CTCAACGTCCGTC . 251.0 76.0 163.0 0.0 . 94 . . Atlas-SNP FRMPD1 22844 hgsc.bcm.edu hg19 9 37708463 37708463 + Missense_Mutation SNP A A C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . FRMPD1 NM_014907 exon4 c.A327C p.E109D TGCTGAAGACCTT . 85.0 34.0 56.0 0.0 . 237 . . Atlas-SNP FBP1 2203 hgsc.bcm.edu hg19 9 97367847 97367847 + Silent SNP A A T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . FBP1 NM_000507 exon6 c.T717A p.A239A ATAAGGAGCTGAA . 84.0 28.0 61.0 0.0 . 13 . . Atlas-SNP CACNA1B 774 hgsc.bcm.edu hg19 9 141008886 141008886 + Missense_Mutation SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . CACNA1B NM_001243812 exon40 c.A5593G p.K1865E TTCTACAAGCAGA . 111.0 51.0 72.0 0.0 . 266 . . Atlas-SNP MMS19 64210 hgsc.bcm.edu hg19 10 99219816 99219816 + Silent SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . MMS19 NM_022362 exon26 c.T2643C p.H881H AGCAGCATGGAAG . 143.0 55.0 136.0 0.0 . 36 . . Atlas-SNP MMP21 118856 hgsc.bcm.edu hg19 10 127456123 127456123 + Missense_Mutation SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . MMP21 NM_147191 exon6 c.T1388C p.I463T AAGTAAATTAACT . 121.0 46.0 85.0 0.0 . 46 . . Atlas-SNP DOCK1 1793 hgsc.bcm.edu hg19 10 128835982 128835982 + Splice_Site SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . DOCK1 NM_001380 exon19 c.1850-1G>A . TTTCCAGTGGACC . 89.0 37.0 60.0 0.0 . 188 . . Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129914021 129914021 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . MKI67 NM_002417 exon7 c.A651T p.E217D CTTCAATTCTCCA . 61.0 31.0 49.0 0.0 . 363 . . Atlas-SNP EPS8L2 64787 hgsc.bcm.edu hg19 11 721563 721563 + Splice_Site SNP A A T rs111293076 bycluster TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . EPS8L2 NM_022772 exon10 c.769-2A>T . GACCCCAGCAAAT . 247.0 118.0 154.0 0.0 . 42 . T|1.000 Atlas-SNP SMPD1 6609 hgsc.bcm.edu hg19 11 6411942 6411942 + Silent SNP G G C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . SMPD1 NM_000543 exon1 c.G114C p.A38A GCTGGCGCTGGCG . 83.0 7.0 32.0 0.0 . 108 . . Atlas-SNP OR5M11 219487 hgsc.bcm.edu hg19 11 56310580 56310580 + Missense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f OR5M11,NS,carcinoma,0,1 OR5M11 NM_001005245 exon1 c.G154A p.D52N GAGAGTCCAGTCT . 140.0 69.0 92.0 0.0 . 60 . . Atlas-SNP OR9G9 504191 hgsc.bcm.edu hg19 11 56468039 56468039 + Missense_Mutation SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . . NM_001013358 exon1 c.A176G p.Y59C CCATGTATTTTTT . 68.0 16.0 77.0 0.0 . . . . Atlas-SNP HRASLS5 117245 hgsc.bcm.edu hg19 11 63257813 63257813 + Silent SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . HRASLS5 NM_001146728 exon2 c.T171C p.L57L TAATTCAAGGGGG . 59.0 21.0 32.0 0.0 . 28 . . Atlas-SNP CATSPER1 117144 hgsc.bcm.edu hg19 11 65790380 65790380 + Missense_Mutation SNP C C A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . CATSPER1 NM_053054 exon2 c.G1369T p.V457F GGCAGACAACGAA . 88.0 37.0 94.0 0.0 . 101 . . Atlas-SNP PICALM 8301 hgsc.bcm.edu hg19 11 85722082 85722082 + Missense_Mutation SNP T T G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . PICALM NM_007166 exon7 c.A756C p.K252N TGCAACTTTGAGG . 93.0 39.0 92.0 0.0 . 82 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103156996 103156996 + Missense_Mutation SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . DYNC2H1 NM_001080463 exon75 c.A10924G p.S3642G CTCCCCAGTCTTT . 70.0 27.0 53.0 0.0 . 246 . . Atlas-SNP NCAM1 4684 hgsc.bcm.edu hg19 11 113142501 113142501 + Missense_Mutation SNP C C A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . NCAM1 NM_001242607 exon20 c.C2437A p.P813T AAGGAGCCCATCG . 69.0 34.0 68.0 0.0 . 372 . . Atlas-SNP WNT5B 81029 hgsc.bcm.edu hg19 12 1755095 1755095 + Missense_Mutation SNP G G C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . WNT5B NM_032642 exon5 c.G757C p.A253P AGCGCGGCCGCCA . 44.0 14.0 32.0 0.0 . 27 . . Atlas-SNP MLF2 8079 hgsc.bcm.edu hg19 12 6859471 6859471 + Nonsense_Mutation SNP C C A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . MLF2 NM_005439 exon6 c.G271T p.E91X TGTGTTCCTGAGG . 51.0 23.0 48.0 0.0 . 26 . . Atlas-SNP MLF2 8079 hgsc.bcm.edu hg19 12 6859472 6859472 + Splice_Site SNP C C G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . MLF2 NM_005439 exon7 c.271-1G>C . GTGTTCCTGAGGA . 51.0 22.0 48.0 0.0 . 26 . . Atlas-SNP A2ML1 144568 hgsc.bcm.edu hg19 12 9004828 9004828 + Missense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . A2ML1 NM_144670 exon20 c.C2486T p.S829L CTAAATCGCATGA . 97.0 8.0 92.0 0.0 . 199 . . Atlas-SNP PDE1B 5153 hgsc.bcm.edu hg19 12 54969802 54969802 + Missense_Mutation SNP A A T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . PDE1B NM_000924 exon13 c.A1294T p.T432S GAGCCCACATTCT . 59.0 23.0 72.0 0.0 . 76 . . Atlas-SNP PAN2 9924 hgsc.bcm.edu hg19 12 56720131 56720131 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . PAN2 NM_014871 exon8 c.A1325T p.Y442F GGCGCATAGCCAA . 120.0 48.0 74.0 0.0 . 107 . . Atlas-SNP LRIG3 121227 hgsc.bcm.edu hg19 12 59307787 59307787 + Missense_Mutation SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . LRIG3 NM_153377 exon3 c.C359T p.S120L TTTGCCGAGACTG . 68.0 22.0 51.0 0.0 . 120 . . Atlas-SNP C12orf43 64897 hgsc.bcm.edu hg19 12 121448715 121448715 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . C12orf43 NM_022895 exon3 c.A203T p.E68V TCATGCTCATTCA . 147.0 56.0 118.0 0.0 . 30 . . Atlas-SNP SCARB1 949 hgsc.bcm.edu hg19 12 125299561 125299561 + Silent SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . SCARB1 NM_005505 exon3 c.C384T p.G128G CTCCGAGCCGTGG . 123.0 5.0 82.0 0.0 . 40 . . Atlas-SNP ATP12A 479 hgsc.bcm.edu hg19 13 25255721 25255721 + Missense_Mutation SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . ATP12A NM_001185085 exon2 c.G31A p.V11M TACTCCGTGGAGC . 261.0 14.0 225.0 0.0 . 172 . . Atlas-SNP KLHL1 57626 hgsc.bcm.edu hg19 13 70314528 70314528 + Silent SNP G G T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . KLHL1 NM_020866 exon8 c.C1800A p.G600G TTACTTGCCATTC . 51.0 34.0 56.0 0.0 . 164 . . Atlas-SNP RTN1 6252 hgsc.bcm.edu hg19 14 60212848 60212848 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f RTN1,NS,carcinoma,0,1 RTN1 NM_021136 exon2 c.A593T p.D198V GTTATGTCAATGT . 107.0 26.0 108.0 0.0 . 139 . . Atlas-SNP OR4M2 390538 hgsc.bcm.edu hg19 15 22368845 22368845 + Missense_Mutation SNP G G C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . OR4M2 NM_001004719 exon1 c.G270C p.K90N GAGGAAGATAATT . 175.0 55.0 180.0 0.0 . 140 . . Atlas-SNP APBA2 321 hgsc.bcm.edu hg19 15 29346270 29346270 + Silent SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . APBA2 NM_005503 exon3 c.G183A p.Q61Q GGAACAGGAGTGC . 221.0 110.0 129.0 0.0 . 132 . . Atlas-SNP KNSTRN 90417 hgsc.bcm.edu hg19 15 40675151 40675151 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . . NM_033286 exon1 c.C115T p.Q39X GAAACCCAGGCGG . 105.0 42.0 63.0 0.0 . . . . Atlas-SNP SPG11 80208 hgsc.bcm.edu hg19 15 44876651 44876651 + Missense_Mutation SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . SPG11 NM_025137 exon30 c.A5227G p.I1743V TTGAAATTGAATT . 92.0 50.0 103.0 0.0 . 207 . . Atlas-SNP DUOX2 50506 hgsc.bcm.edu hg19 15 45404147 45404147 + Missense_Mutation SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . DUOX2 NM_014080 exon5 c.A332G p.H111R AGAACATGGTAGC . 191.0 90.0 156.0 0.0 . 137 . . Atlas-SNP CRTC3 64784 hgsc.bcm.edu hg19 15 91181991 91181991 + Missense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . CRTC3 NM_022769 exon13 c.C1492T p.P498S TTCTTCCCAGATG . 93.0 40.0 87.0 0.0 . 47 . . Atlas-SNP SLX4 84464 hgsc.bcm.edu hg19 16 3647563 3647563 + Silent SNP C C A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . SLX4 NM_032444 exon7 c.G1500T p.T500T TGGTGGCGTGCTA . 111.0 53.0 92.0 0.0 . 173 . . Atlas-SNP SPNS1 83985 hgsc.bcm.edu hg19 16 28986482 28986482 + Missense_Mutation SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . SPNS1 NM_001142451 exon1 c.T10C p.S4P GCCGGGTCCGACA . 39.0 17.0 42.0 0.0 . 47 . . Atlas-SNP TANGO6 79613 hgsc.bcm.edu hg19 16 68894026 68894026 + Missense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . . NM_024562 exon2 c.C334T p.L112F ATCCGCCTTGCAG . 114.0 47.0 114.0 0.0 . . . . Atlas-SNP NQO1 1728 hgsc.bcm.edu hg19 16 69752318 69752318 + Missense_Mutation SNP A A C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . NQO1 NM_000903 exon2 c.T127G p.Y43D TGGCATAGAGGTC . 97.0 46.0 85.0 0.0 . 21 . . Atlas-SNP FA2H 79152 hgsc.bcm.edu hg19 16 74752917 74752917 + Missense_Mutation SNP A A T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . FA2H NM_024306 exon5 c.T755A p.L252Q AAGTGCAGCATGA . 81.0 32.0 66.0 0.0 . 21 . . Atlas-SNP SPEM1 374768 hgsc.bcm.edu hg19 17 7324364 7324364 + Missense_Mutation SNP T T A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . SPEM1 NM_199339 exon3 c.T370A p.C124S GCTCACTGCCCAG . 106.0 53.0 69.0 0.0 . 41 . . Atlas-SNP EME1 146956 hgsc.bcm.edu hg19 17 48457826 48457826 + Silent SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . EME1 NM_001166131 exon8 c.T1539C p.V513V TGCAGTTGTGAAT . 84.0 34.0 67.0 0.0 . 39 . . Atlas-SNP GRIN2C 2905 hgsc.bcm.edu hg19 17 72838940 72838940 + Silent SNP C C G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . GRIN2C NM_000835 exon13 c.G3336C p.S1112S GCAGGCCGAGTGG . 51.0 23.0 19.0 0.0 . 144 . . Atlas-SNP FOXK2 3607 hgsc.bcm.edu hg19 17 80529707 80529707 + Missense_Mutation SNP A A C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . FOXK2 NM_004514 exon4 c.A870C p.K290N CACTAAAAATTAT . 148.0 52.0 128.0 0.0 . 46 . . Atlas-SNP TXNDC2 84203 hgsc.bcm.edu hg19 18 9886755 9886755 + Silent SNP A A C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . TXNDC2 NM_001098529 exon2 c.A279C p.S93S GTCCTCAGCAAAC . 164.0 12.0 128.0 0.0 . 168 . . Atlas-SNP RIOK3 8780 hgsc.bcm.edu hg19 18 21053404 21053404 + Missense_Mutation SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . RIOK3 NM_003831 exon8 c.A827G p.E276G AGGATGAAAAGGA . 297.0 133.0 249.0 0.0 . 42 . . Atlas-SNP DTNA 1837 hgsc.bcm.edu hg19 18 32418754 32418754 + Missense_Mutation SNP T T G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . DTNA NM_001390 exon12 c.T1218G p.H406Q TGAACATGTTCTC . 139.0 56.0 128.0 0.0 . 321 . . Atlas-SNP ZNF397 84307 hgsc.bcm.edu hg19 18 32834231 32834231 + Missense_Mutation SNP C C A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f ZSCAN30,colon,carcinoma,0,2 ZNF397 NM_032347 exon5 c.C682A p.R228S GCTATCCGTTGGG . 117.0 48.0 109.0 1.0 . 51 . . Atlas-SNP ZNRF4 148066 hgsc.bcm.edu hg19 19 5456638 5456638 + Missense_Mutation SNP A A T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . ZNRF4 NM_181710 exon1 c.A1136T p.H379L CGGGCCACCGGCC . 107.0 45.0 58.0 0.0 . 59 . . Atlas-SNP MLLT1 4298 hgsc.bcm.edu hg19 19 6213406 6213406 + Missense_Mutation SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . MLLT1 NM_005934 exon11 c.A1493G p.E498G ACCAGCTCATCCG . 72.0 29.0 49.0 0.0 . 47 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9083038 9083038 + Missense_Mutation SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . MUC16 NM_024690 exon1 c.C8777T p.S2926F GAGGAAGATGCTG . 203.0 93.0 143.0 0.0 . 4315 . . Atlas-SNP ZNF181 339318 hgsc.bcm.edu hg19 19 35231867 35231867 + Missense_Mutation SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . ZNF181 NM_001029997 exon4 c.A581G p.K194R TACCAAAAAAGTC . 420.0 195.0 343.0 1.0 . 65 . . Atlas-SNP PTH2 113091 hgsc.bcm.edu hg19 19 49926536 49926536 + Missense_Mutation SNP G G C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . PTH2 NM_178449 exon1 c.C61G p.L21V CCAGCAGCAGCAG . 129.0 12.0 51.0 0.0 . 20 . . Atlas-SNP PTH2 113091 hgsc.bcm.edu hg19 19 49926539 49926539 + Missense_Mutation SNP G G C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . PTH2 NM_178449 exon1 c.C58G p.L20V GCAGCAGCAGCAG . 123.0 14.0 48.0 0.0 . 20 . . Atlas-SNP LILRA5 353514 hgsc.bcm.edu hg19 19 54822602 54822602 + Missense_Mutation SNP C C G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . LILRA5 NM_181879 exon5 c.G794C p.C265S TCTTAGCAGGGGC . 91.0 10.0 68.0 0.0 . 49 . . Atlas-SNP NOP56 10528 hgsc.bcm.edu hg19 20 2635441 2635441 + Silent SNP G G A rs140571524 alternate_allele TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . NOP56 NM_006392 exon5 c.G417A p.L139L CGATCTGTCAGCT . 72.0 28.0 55.0 0.0 . 73 . G|1.000;T|0.000 Atlas-SNP RRP1B 23076 hgsc.bcm.edu hg19 21 45107430 45107430 + Missense_Mutation SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . RRP1B NM_015056 exon13 c.G1175A p.S392N AGGACAGTGAAAG . 29.0 16.0 22.0 0.0 . 51 . . Atlas-SNP AIRE 326 hgsc.bcm.edu hg19 21 45707002 45707002 + Missense_Mutation SNP G G T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . AIRE NM_000383 exon3 c.G449T p.G150V CAAGGGGCACCGC . 150.0 40.0 102.0 0.0 . 61 . . Atlas-SNP PIWIL3 440822 hgsc.bcm.edu hg19 22 25155853 25155853 + Missense_Mutation SNP C C T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . PIWIL3 NM_001008496 exon3 c.G206A p.G69E GCTCCTCCTCCTG . 70.0 35.0 39.0 0.0 . 115 . . Atlas-SNP TAB1 10454 hgsc.bcm.edu hg19 22 39817945 39817945 + Missense_Mutation SNP A A T novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . TAB1 NM_153497 exon8 c.A890T p.E297V CCCTAGAGGCAGC . 118.0 51.0 101.0 0.0 . 36 . . Atlas-SNP ACE2 59272 hgsc.bcm.edu hg19 X 15609834 15609834 + Splice_Site SNP A A G novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . ACE2 NM_021804 exon6 c.583+2T>C . AAACTTACGATTT . 121.0 110.0 53.0 0.0 . 87 . . Atlas-SNP KDM5C 8242 hgsc.bcm.edu hg19 X 53230776 53230776 + Missense_Mutation SNP T T C novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . KDM5C NM_004187 exon14 c.A2017G p.M673V GCACCATGATGAA . 142.0 6.0 77.0 0.0 . 385 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 12345 12345 + Silent SNP G G A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . . ENST00000361567 exon1 c.G9A p.M3M AACCATGCACACT . 80.0 76.0 12.0 0.0 . . . . Atlas-SNP USP37 57695 hgsc.bcm.edu hg19 2 219330793 219330794 + Frame_Shift_Ins INS - - A novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . USP37 NM_020935 exon21 c.2406_2407insT p.M802fs . . 60.0 23.0 43.0 0.0 . 76 . . Atlas-INDEL FBXL18 80028 hgsc.bcm.edu hg19 7 5540596 5540605 + Frame_Shift_Del DEL GCGCGGTCGG GCGCGGTCGG - novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 GCGCGGTCGG GCGCGGTCGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . FBXL18 NM_024963 exon3 c.1296_1305del p.432_435del . . 73.0 24.0 37.0 0.0 . 99 . . Atlas-INDEL MYO16 23026 hgsc.bcm.edu hg19 13 109644729 109644729 + Frame_Shift_Del DEL A A - novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . MYO16 NM_001198950 exon21 c.2374delC p.Q792fs . . 85.0 37.0 79.0 0.0 . 285 . . Atlas-INDEL NCKAP1L 3071 hgsc.bcm.edu hg19 12 54917217 54917223 + Frame_Shift_Del DEL AAGAACA AAGAACA - novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 AAGAACA AAGAACA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . NCKAP1L NM_005337 exon19 c.1917_1923del p.639_641del . . 210.0 64.0 182.0 0.0 . 180 . . Atlas-INDEL DDX60L 91351 hgsc.bcm.edu hg19 4 169369922 169369922 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAW2-01A-11D-A40P-10 TCGA-DD-AAW2-10A-01D-A40P-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 91d7e3b8-5b43-4687-82e3-fd0f5f872589 8038b7be-ceb3-48e7-a9a2-b55e0e60721f . DDX60L NM_001012967 exon9 c.1006delT p.C336fs . . 376.0 176.0 377.0 0.0 . 116 . . Atlas-INDEL