Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm FBXO44 93611 hgsc.bcm.edu hg19 1 11721248 11721248 + Missense_Mutation SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . FBXO44 NM_033182 exon6 c.G686A p.G229D ACGGCGGCGTGGA . 63.0 14.0 54.0 0.0 . 20 . . Atlas-SNP HEYL 26508 hgsc.bcm.edu hg19 1 40092692 40092692 + Silent SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f HEYL,colon,carcinoma,0,1 HEYL NM_014571 exon5 c.C474T p.A158A CATCTCGGCTGCG . 171.0 11.0 157.0 0.0 . 27 . . Atlas-SNP LRRC7 57554 hgsc.bcm.edu hg19 1 70502269 70502269 + Silent SNP A A T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . LRRC7 NM_020794 exon18 c.A2136T p.T712T GACAACAGCTAAA . 174.0 35.0 117.0 0.0 . 400 . . Atlas-SNP PSMA5 5686 hgsc.bcm.edu hg19 1 109944673 109944673 + Missense_Mutation SNP T T A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . PSMA5 NM_002790 exon9 c.A688T p.T230S CCTTTGTGAACAT . 51.0 12.0 49.0 0.0 . 14 . . Atlas-SNP SHCBP1L 81626 hgsc.bcm.edu hg19 1 182920459 182920459 + Missense_Mutation SNP C C A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SHCBP1L NM_030933 exon2 c.G549T p.L183F CTCAACCAATATA . 407.0 47.0 221.0 0.0 . 64 . . Atlas-SNP MARK1 4139 hgsc.bcm.edu hg19 1 220826619 220826619 + Missense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . MARK1 NM_018650 exon16 c.C1913T p.T638M ATGAAACGGGTGC . 291.0 12.0 141.0 0.0 . 161 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1842975 1842975 + Missense_Mutation SNP G G T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f MYT1L,NS,carcinoma,0,1 MYT1L NM_015025 exon21 c.C3020A p.T1007K CCTGGCGTGGGGC . 167.0 35.0 135.0 0.0 . 241 . . Atlas-SNP ASXL2 55252 hgsc.bcm.edu hg19 2 25966307 25966307 + Missense_Mutation SNP T T C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . ASXL2 NM_018263 exon12 c.A2899G p.I967V GCAGAATTTGCTC . 69.0 26.0 59.0 0.0 . 217 . . Atlas-SNP GALNT14 79623 hgsc.bcm.edu hg19 2 31154985 31154985 + Missense_Mutation SNP C C T rs368328840 TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . GALNT14 NM_001253826 exon11 c.G1022A p.R341Q TTCTTCCGGAAGA . 90.0 22.0 69.0 0.0 . 103 . . Atlas-SNP AFTPH 54812 hgsc.bcm.edu hg19 2 64779969 64779969 + Missense_Mutation SNP A A G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . AFTPH NM_017657 exon2 c.A1361G p.D454G CTCAAGATTCAAT . 151.0 39.0 112.0 0.0 . 117 . . Atlas-SNP CD207 50489 hgsc.bcm.edu hg19 2 71060827 71060827 + Missense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . CD207 NM_015717 exon3 c.G515A p.R172Q AGTGCCCGGATCT . 106.0 19.0 89.0 0.0 . 47 . . Atlas-SNP CTNNA2 1496 hgsc.bcm.edu hg19 2 79971559 79971559 + Missense_Mutation SNP A A C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . CTNNA2 NM_001164883 exon3 c.A149C p.K50T GTAAAAAGAAAGG . 253.0 67.0 223.0 0.0 . 462 . . Atlas-SNP FAM178B 51252 hgsc.bcm.edu hg19 2 97637835 97637835 + Missense_Mutation SNP G G T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . FAM178B NM_001122646 exon3 c.C367A p.L123M CCTGCAGCACCCT . 373.0 88.0 303.0 0.0 . 35 . . Atlas-SNP PRRT3 285368 hgsc.bcm.edu hg19 3 9988877 9988877 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . PRRT3 NM_207351 exon4 c.G1980A p.W660X GTACAGCCAGAGC . 35.0 8.0 32.0 0.0 . 35 . . Atlas-SNP VILL 50853 hgsc.bcm.edu hg19 3 38043300 38043300 + Silent SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . VILL NM_015873 exon12 c.C1428T p.S476S GGGCAGCGAGCCC . 104.0 30.0 94.0 0.0 . 61 . . Atlas-SNP ERC2 26059 hgsc.bcm.edu hg19 3 56026116 56026116 + Missense_Mutation SNP C C G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . ERC2 NM_015576 exon11 c.G2224C p.D742H CCTTGTCATTCTT . 139.0 34.0 111.0 0.0 . 221 . . Atlas-SNP SHQ1 55164 hgsc.bcm.edu hg19 3 72799710 72799710 + Missense_Mutation SNP T T C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SHQ1 NM_018130 exon11 c.A1459G p.T487A TGACTGTCTCAGA . 97.0 19.0 93.0 0.0 . 60 . . Atlas-SNP PPP4R2 151987 hgsc.bcm.edu hg19 3 73046215 73046215 + Silent SNP G G T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . PPP4R2 NM_174907 exon1 c.G27T p.A9A GGAGGCGCTGAAA . 275.0 72.0 232.0 0.0 . 30 . . Atlas-SNP OR5H14 403273 hgsc.bcm.edu hg19 3 97868486 97868486 + Missense_Mutation SNP T T C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . OR5H14 NM_001005514 exon1 c.T257C p.L86S ACTTCTTAGCTAA . 265.0 66.0 201.0 0.0 . 56 . . Atlas-SNP GTF2E1 2960 hgsc.bcm.edu hg19 3 120500204 120500204 + Missense_Mutation SNP T T C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . GTF2E1 NM_005513 exon5 c.T1207C p.F403L CGTCCGTTCTCCT . 213.0 38.0 194.0 0.0 . 52 . . Atlas-SNP CNOT6L 246175 hgsc.bcm.edu hg19 4 78694248 78694248 + Silent SNP A A G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . CNOT6L NM_144571 exon4 c.T387C p.T129T ACCTAGAGTTTGT . 549.0 165.0 558.0 0.0 . 57 . . Atlas-SNP BANK1 55024 hgsc.bcm.edu hg19 4 102839251 102839251 + Missense_Mutation SNP G G C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . BANK1 NM_017935 exon7 c.G1111C p.A371P ACCTGGGCATCTA . 317.0 100.0 318.0 0.0 . 95 . . Atlas-SNP TRPC3 7222 hgsc.bcm.edu hg19 4 122828649 122828649 + Missense_Mutation SNP G G C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . TRPC3 NM_001130698 exon7 c.C1866G p.S622R AGAGAAGCTGAGC . 301.0 81.0 361.0 0.0 . 201 . . Atlas-SNP CLGN 1047 hgsc.bcm.edu hg19 4 141323176 141323176 + Missense_Mutation SNP T T C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . CLGN NM_001130675 exon7 c.A464G p.Y155C TTAATGTATGCAC . 453.0 144.0 529.0 0.0 . 76 . . Atlas-SNP C4orf47 441054 hgsc.bcm.edu hg19 4 186357237 186357237 + Missense_Mutation SNP C C G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . C4orf47 NM_001114357 exon3 c.C358G p.P120A GGTGGTCCAGTCC . 549.0 157.0 595.0 1.0 . 13 . . Atlas-SNP EMB 133418 hgsc.bcm.edu hg19 5 49701580 49701580 + Silent SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . EMB NM_198449 exon5 c.C579T p.Y193Y ACTACTGTACCAG . 767.0 43.0 653.0 0.0 . 42 . . Atlas-SNP SKIV2L2 23517 hgsc.bcm.edu hg19 5 54701259 54701259 + Missense_Mutation SNP A A G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SKIV2L2 NM_015360 exon22 c.A2488G p.I830V ATTGCAATAGATA . 154.0 42.0 114.0 0.0 . 104 . . Atlas-SNP SLC38A9 153129 hgsc.bcm.edu hg19 5 54965110 54965110 + Missense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SLC38A9 NM_173514 exon7 c.G472A p.G158S AAAGGCCCATCAG . 101.0 22.0 97.0 0.0 . 50 . . Atlas-SNP MCCC2 64087 hgsc.bcm.edu hg19 5 70952644 70952644 + Missense_Mutation SNP A A G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . MCCC2 NM_022132 exon17 c.A1649G p.N550S CCCTCAACGCACC . 175.0 34.0 110.0 0.0 . 47 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127670429 127670429 + Missense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . FBN2 NM_001999 exon31 c.G4081A p.G1361R TGGTCCCCTTCTT . 94.0 18.0 70.0 0.0 . 858 . . Atlas-SNP AFAP1L1 134265 hgsc.bcm.edu hg19 5 148695457 148695457 + Missense_Mutation SNP G G A rs371511486 TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f AFAP1L1,colon,carcinoma,0,1 AFAP1L1 NM_001146337 exon10 c.G1094A p.R365H TTGGCCGCCGGGA . 160.0 25.0 114.0 0.0 . 86 . . Atlas-SNP HMMR 3161 hgsc.bcm.edu hg19 5 162901124 162901124 + Missense_Mutation SNP A A T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . HMMR NM_001142556 exon10 c.A966T p.L322F AAACTTAAAACAG . 934.0 165.0 568.0 0.0 . 64 . . Atlas-SNP SLIT3 6586 hgsc.bcm.edu hg19 5 168176483 168176483 + Missense_Mutation SNP A A T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SLIT3 NM_001271946 exon19 c.T2131A p.C711S CATCACAGGTGAA . 121.0 27.0 93.0 0.0 . 224 . . Atlas-SNP SYCP2L 221711 hgsc.bcm.edu hg19 6 10911072 10911072 + Silent SNP G G T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SYCP2L NM_001040274 exon12 c.G888T p.P296P ATTTCCGTGTATT . 78.0 29.0 60.0 0.0 . 101 . . Atlas-SNP ATF6B 1388 hgsc.bcm.edu hg19 6 32093947 32093947 + Missense_Mutation SNP G G T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . ATF6B NM_004381 exon5 c.C425A p.S142Y AATGAGGATGTTG . 100.0 19.0 77.0 0.0 . 40 . . Atlas-SNP RUNX2 860 hgsc.bcm.edu hg19 6 45514837 45514837 + Missense_Mutation SNP A A G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . RUNX2 NM_001024630 exon9 c.A1361G p.Y454C GATCCTATCAGTT . 174.0 47.0 114.0 0.0 . 128 . . Atlas-SNP MYO6 4646 hgsc.bcm.edu hg19 6 76538320 76538320 + Missense_Mutation SNP A A T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . MYO6 NM_004999 exon4 c.A251T p.D84V GTAAAGACAGAAT . 269.0 64.0 211.0 0.0 . 124 . . Atlas-SNP AIM1 202 hgsc.bcm.edu hg19 6 106967341 106967341 + Missense_Mutation SNP T T G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . AIM1 NM_001624 exon2 c.T1034G p.V345G CCAAAGTTACCGT . 261.0 62.0 147.0 0.0 . 161 . . Atlas-SNP SMPD2 6610 hgsc.bcm.edu hg19 6 109764501 109764501 + Missense_Mutation SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SMPD2 NM_003080 exon9 c.G761A p.S254N GTAAGAGTTTTGA . 107.0 23.0 102.0 0.0 . 25 . . Atlas-SNP RGS17 26575 hgsc.bcm.edu hg19 6 153332802 153332802 + Silent SNP A A C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . RGS17 NM_012419 exon5 c.T540G p.T180T CATTAAAGTATAT . 209.0 17.0 233.0 0.0 . 32 . . Atlas-SNP SDK1 221935 hgsc.bcm.edu hg19 7 4245519 4245519 + Missense_Mutation SNP A A G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SDK1 NM_152744 exon36 c.A5107G p.M1703V CCGGCCATGGCCC . 119.0 29.0 93.0 0.0 . 361 . . Atlas-SNP MEOX2 4223 hgsc.bcm.edu hg19 7 15725803 15725803 + Silent SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f MEOX2,caecum,carcinoma,0,1 MEOX2 NM_005924 exon1 c.C225T p.H75H ATGGTGGTGGTGG . 58.0 5.0 56.0 1.0 . 68 . . Atlas-SNP HECW1 23072 hgsc.bcm.edu hg19 7 43447201 43447201 + Silent SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . HECW1 NM_015052 exon8 c.C672T p.N224N TTTCAACCCAGAC . 279.0 22.0 242.0 0.0 . 540 . . Atlas-SNP CACNA2D1 781 hgsc.bcm.edu hg19 7 81603858 81603858 + Missense_Mutation SNP T T G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . CACNA2D1 NM_000722 exon25 c.A1966C p.N656H GGTCATTGCAGTA . 99.0 21.0 94.0 0.0 . 191 . . Atlas-SNP KIAA1324L 222223 hgsc.bcm.edu hg19 7 86567441 86567441 + Splice_Site SNP C C G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . KIAA1324L NM_001142749 exon9 c.1089+1G>C . CTGGTACCTTTCC . 65.0 13.0 68.0 0.0 . 225 . . Atlas-SNP OPLAH 26873 hgsc.bcm.edu hg19 8 145113729 145113729 + Silent SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . OPLAH NM_017570 exon5 c.G534A p.G178G TAGCAGCCCCTCC . 117.0 50.0 91.0 0.0 . 78 . . Atlas-SNP DOCK8 81704 hgsc.bcm.edu hg19 9 328171 328171 + Missense_Mutation SNP G G C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . DOCK8 NM_203447 exon9 c.G1044C p.K348N AGTCAAGGTAATT . 60.0 12.0 76.0 0.0 . 401 . . Atlas-SNP MEGF9 1955 hgsc.bcm.edu hg19 9 123476253 123476253 + Silent SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . MEGF9 NM_001080497 exon1 c.G384A p.P128P CGCCGCCGGAGGG . 110.0 29.0 120.0 0.0 . 33 . . Atlas-SNP C9orf142 286257 hgsc.bcm.edu hg19 9 139886992 139886992 + Missense_Mutation SNP G G C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . C9orf142 NM_183241 exon1 c.G97C p.D33H GAGGGGGACCGCG . 43.0 5.0 39.0 0.0 . 8 . . Atlas-SNP WAC 51322 hgsc.bcm.edu hg19 10 28897314 28897314 + Silent SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . WAC NM_016628 exon8 c.G1119A p.T373T AGCCACGCTGCAG . 126.0 31.0 122.0 0.0 . 77 . . Atlas-SNP NFKB2 4791 hgsc.bcm.edu hg19 10 104156557 104156557 + Missense_Mutation SNP C C G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . NFKB2 NM_001077494 exon5 c.C220G p.R74G AAGGGCCGAAAGA . 119.0 27.0 65.0 0.0 . 48 . . Atlas-SNP ACSL5 51703 hgsc.bcm.edu hg19 10 114169431 114169431 + Silent SNP A A T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . ACSL5 NM_016234 exon7 c.A867T p.L289L ATCCCTATATGAT . 124.0 25.0 87.0 0.0 . 51 . . Atlas-SNP FANCF 2188 hgsc.bcm.edu hg19 11 22646577 22646577 + Silent SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . FANCF NM_022725 exon1 c.G780A p.L260L TAAAGTCAAAAGC . 132.0 18.0 113.0 0.0 . 24 . . Atlas-SNP KDM2A 22992 hgsc.bcm.edu hg19 11 67015791 67015791 + Missense_Mutation SNP T T A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . KDM2A NM_012308 exon16 c.T2005A p.C669S CCAAATTGCTGGG . 206.0 36.0 176.0 0.0 . 80 . . Atlas-SNP CDON 50937 hgsc.bcm.edu hg19 11 125830853 125830853 + Missense_Mutation SNP T T A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . CDON NM_001243597 exon20 c.A3848T p.Q1283L CGGGGCTGCTGAA . 194.0 45.0 144.0 0.0 . 137 . . Atlas-SNP EMP1 2012 hgsc.bcm.edu hg19 12 13366426 13366426 + Missense_Mutation SNP C C A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . EMP1 NM_001423 exon3 c.C92A p.S31Y TGGTTTCCAATAC . 215.0 39.0 163.0 0.0 . 14 . . Atlas-SNP PFDN5 5204 hgsc.bcm.edu hg19 12 53689386 53689386 + Missense_Mutation SNP T T A rs199718276 alternate_allele TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f PFDN5,NS,carcinoma,0,2 PFDN5 NM_002624 exon1 c.T35A p.L12Q TGAATCTGCCGCA . 150.0 42.0 76.0 0.0 . 16 . . Atlas-SNP ERBB3 2065 hgsc.bcm.edu hg19 12 56495091 56495091 + Missense_Mutation SNP G G C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . ERBB3 NM_001982 exon27 c.G3448C p.G1150R CCACCCGGGTTAG . 140.0 32.0 108.0 0.0 . 350 . . Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57591115 57591115 + Missense_Mutation SNP A A G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . LRP1 NM_002332 exon57 c.A9110G p.Y3037C ACCGGTACTACCT . 136.0 38.0 115.0 0.0 . 428 . . Atlas-SNP SLC5A8 160728 hgsc.bcm.edu hg19 12 101573838 101573838 + Missense_Mutation SNP G G A rs200408412 TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SLC5A8 NM_145913 exon10 c.C1202T p.A401V GCCAGCGCAGCCA . 197.0 36.0 120.0 0.0 . 102 . G|0.999;A|0.001 Atlas-SNP UBC 7316 hgsc.bcm.edu hg19 12 125397889 125397889 + Silent SNP C C A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . UBC NM_021009 exon2 c.G429T p.L143L CAGGTGCAGGGTA . 145.0 32.0 118.0 0.0 . 79 . . Atlas-SNP EPSTI1 94240 hgsc.bcm.edu hg19 13 43566216 43566216 + Missense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . EPSTI1 NM_001002264 exon1 c.G86A p.G29E TGCCGCCCAGAAG . 324.0 86.0 207.0 0.0 . 47 . . Atlas-SNP RNF219 79596 hgsc.bcm.edu hg19 13 79190261 79190261 + Missense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . RNF219 NM_024546 exon6 c.G1635A p.M545I CTCTGACATCATT . 112.0 33.0 93.0 0.0 . 94 . . Atlas-SNP KLHL28 54813 hgsc.bcm.edu hg19 14 45403543 45403543 + Missense_Mutation SNP T T C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . KLHL28 NM_017658 exon3 c.A1118G p.N373S CTTTCATTCATTC . 169.0 45.0 169.0 0.0 . 53 . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28516001 28516001 + Missense_Mutation SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . HERC2 NM_004667 exon10 c.C1097T p.P366L CTCAGAGGGCCAG . 178.0 39.0 141.0 0.0 . 501 . . Atlas-SNP DENND4A 10260 hgsc.bcm.edu hg19 15 65957785 65957785 + Missense_Mutation SNP T T C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . DENND4A NM_001144823 exon30 c.A5254G p.M1752V CAGACATACAGTG . 101.0 28.0 104.0 0.0 . 217 . . Atlas-SNP PSTPIP1 9051 hgsc.bcm.edu hg19 15 77320928 77320928 + Missense_Mutation SNP G G T rs1141043 TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . PSTPIP1 NM_003978 exon7 c.G451T p.A151S CGGGACGCGGACG . 366.0 93.0 274.0 0.0 . 50 . G|1.000;|0.000 Atlas-SNP TSR3 115939 hgsc.bcm.edu hg19 16 1399610 1399610 + Splice_Site SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . . NM_001001410 exon7 c.768-1G>A . GGCAGCCTGGGAG . 142.0 20.0 101.0 0.0 . . . . Atlas-SNP SRRM2 23524 hgsc.bcm.edu hg19 16 2815588 2815588 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SRRM2 NM_016333 exon11 c.C5059T p.R1687X CCACCTCGACGTC . 87.0 37.0 81.0 0.0 . 263 . . Atlas-SNP MYH10 4628 hgsc.bcm.edu hg19 17 8424298 8424298 + Missense_Mutation SNP T T A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . MYH10 NM_001256012 exon19 c.A2171T p.H724L ACTAGGTGTGGAT . 223.0 44.0 180.0 0.0 . 148 . . Atlas-SNP MYO18A 399687 hgsc.bcm.edu hg19 17 27442372 27442372 + Missense_Mutation SNP T T C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . MYO18A NM_078471 exon13 c.A2315G p.N772S CACCTATTCACCA . 157.0 31.0 103.0 0.0 . 217 . . Atlas-SNP ANKRD13B 124930 hgsc.bcm.edu hg19 17 27939496 27939496 + Silent SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . ANKRD13B NM_152345 exon12 c.G1335A p.S445S GCCATCGGTGCGA . 237.0 61.0 221.0 0.0 . 39 . . Atlas-SNP KRT10 3858 hgsc.bcm.edu hg19 17 38975319 38975319 + Missense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . KRT10 NM_000421 exon7 c.G1468A p.G490S CGTGGCCGCCGCC . 65.0 5.0 29.0 0.0 . 56 . . Atlas-SNP KRT12 3859 hgsc.bcm.edu hg19 17 39018821 39018821 + Silent SNP A A G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . KRT12 NM_000223 exon7 c.T1383C p.S461S ACCTTTAGAGGAA . 120.0 25.0 101.0 0.0 . 53 . . Atlas-SNP TUBD1 51174 hgsc.bcm.edu hg19 17 57963509 57963509 + Missense_Mutation SNP T T G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . TUBD1 NM_016261 exon3 c.A255C p.Q85H TTTCCATTGGCCA . 175.0 58.0 122.0 0.0 . 38 . . Atlas-SNP INTS2 57508 hgsc.bcm.edu hg19 17 59968916 59968916 + Silent SNP G G T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . INTS2 NM_020748 exon14 c.C1857A p.V619V TTCTGTGACTGGC . 190.0 14.0 156.0 0.0 . 89 . . Atlas-SNP DDX5 1655 hgsc.bcm.edu hg19 17 62496761 62496761 + Silent SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . DDX5 NM_004396 exon12 c.C1347T p.N449N CTTTATGTTATTA . 167.0 47.0 132.0 0.0 . 101 . . Atlas-SNP MIB1 57534 hgsc.bcm.edu hg19 18 19399526 19399526 + Missense_Mutation SNP T T G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . MIB1 NM_020774 exon12 c.T1748G p.L583W TTCTTTTGGAAGC . 126.0 36.0 101.0 0.0 . 87 . . Atlas-SNP DCC 1630 hgsc.bcm.edu hg19 18 50450079 50450079 + Missense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f DCC,NS,carcinoma,0,1 DCC NM_005215 exon4 c.C700T p.P234S ATAGATCCAGGAC . 154.0 32.0 120.0 2.0 . 360 . . Atlas-SNP SALL3 27164 hgsc.bcm.edu hg19 18 76753827 76753827 + Silent SNP C C A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . SALL3 NM_171999 exon2 c.C1836A p.P612P CGCTCCCGTGGGC . 60.0 13.0 48.0 0.0 . 162 . . Atlas-SNP CYP2B6 1555 hgsc.bcm.edu hg19 19 41518307 41518307 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . CYP2B6 NM_000767 exon7 c.C1069T p.Q357X GAGATTCAGAGAT . 90.0 20.0 65.0 0.0 . 79 . . Atlas-SNP ZNF211 10520 hgsc.bcm.edu hg19 19 58152529 58152529 + Silent SNP A A G novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . ZNF211 NM_001265597 exon5 c.A870G p.G290G CAGTGGAAAAAGT . 136.0 32.0 106.0 0.0 . 78 . . Atlas-SNP DLGAP4 22839 hgsc.bcm.edu hg19 20 35128903 35128903 + Missense_Mutation SNP C C T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . DLGAP4 NM_014902 exon9 c.C2392T p.R798C GCCTGCCGCCGAG . 192.0 33.0 136.0 0.0 . 111 . . Atlas-SNP KRTAP24-1 643803 hgsc.bcm.edu hg19 21 31654604 31654604 + Missense_Mutation SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . KRTAP24-1 NM_001085455 exon1 c.C647T p.T216M CAGCTCGTAGGCC . 141.0 18.0 93.0 0.0 . 44 . . Atlas-SNP RIMBP3 85376 hgsc.bcm.edu hg19 22 20457887 20457887 + Missense_Mutation SNP C C A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . RIMBP3 NM_015672 exon1 c.G3415T p.A1139S CATCGGCGACCTC . 1070.0 97.0 802.0 0.0 . 42 . . Atlas-SNP SUSD2 56241 hgsc.bcm.edu hg19 22 24581177 24581177 + Missense_Mutation SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f SUSD2,NS,carcinoma,0,1 SUSD2 NM_019601 exon6 c.G898A p.E300K GAGCTGGAGGATC . 93.0 18.0 60.0 1.0 . 68 . . Atlas-SNP STS 412 hgsc.bcm.edu hg19 X 7252038 7252038 + Missense_Mutation SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . STS NM_000351 exon9 c.G1268A p.G423E TTGATGGACGTGA . 75.0 24.0 58.0 0.0 . 64 . . Atlas-SNP CAPN6 827 hgsc.bcm.edu hg19 X 110495540 110495540 + Missense_Mutation SNP T T C novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . CAPN6 NM_014289 exon5 c.A694G p.I232V CCTCAATGGAACA . 51.0 22.0 51.0 0.0 . 120 . . Atlas-SNP COX2 5743 hgsc.bcm.edu hg19 MT 7997 7997 + Missense_Mutation SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . . ENST00000361739 exon1 c.G412A p.V138I CTTGACGTTGACA . 64.0 9.0 18.0 0.0 . . . . Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 14846 14846 + Missense_Mutation SNP G G A novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . . ENST00000361789 exon1 c.G100A p.G34S AACTTCGGCTCAC . 243.0 163.0 70.0 0.0 . . . . Atlas-SNP ALB 213 hgsc.bcm.edu hg19 4 74285302 74285311 + Frame_Shift_Del DEL TTTTGTAGAG TTTTGTAGAG - novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 TTTTGTAGAG TTTTGTAGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . ALB NM_000477 exon13 c.1730_1739del p.577_580del . . 99.0 15.0 106.0 0.0 . 132 . . Atlas-INDEL FETUB 26998 hgsc.bcm.edu hg19 3 186360348 186360349 + Splice_Site INS - - T novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . FETUB NM_014375 exon3 c.424+1->T . . . 227.0 52.0 125.0 0.0 . 53 . . Atlas-INDEL TNPO1 3842 hgsc.bcm.edu hg19 5 72189057 72189058 + Frame_Shift_Del DEL CT CT - novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . TNPO1 NM_002270 exon16 c.1879_1880del p.627_627del . . 122.0 29.0 87.0 0.0 . 90 . . Atlas-INDEL AHNAK2 113146 hgsc.bcm.edu hg19 14 105414494 105414495 + In_Frame_Ins INS - - TTT novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . AHNAK2 NM_138420 exon7 c.7294_7295insAAA p.G2432delinsKG . . 197.0 42.0 140.0 0.0 . 719 . . Atlas-INDEL KIAA1199 57214 hgsc.bcm.edu hg19 15 81224345 81224347 + In_Frame_Del DEL AAC AAC - novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 AAC AAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . KIAA1199 NM_018689 exon21 c.2757_2759del p.919_920del . . 60.0 18.0 43.0 0.0 . 118 . . Atlas-INDEL SLC25A52 147407 hgsc.bcm.edu hg19 18 29339948 29339948 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . . NM_001034172 exon1 c.708delA p.G236fs . . 483.0 122.0 346.0 0.0 . . . . Atlas-INDEL DCHS2 54798 hgsc.bcm.edu hg19 4 155410671 155410702 + Frame_Shift_Del DEL CGCTTTCGGAATCAATGGCAAAAGATGGTCCA CGCTTTCGGAATCAATGGCAAAAGATGGTCCA - novel TCGA-DD-AAW0-01A-11D-A40R-10 TCGA-DD-AAW0-10A-01D-A40U-10 CGCTTTCGGAATCAATGGCAAAAGATGGTCCA CGCTTTCGGAATCAATGGCAAAAGATGGTCCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4fe50376-65f7-435c-aa48-38e821e121b3 16c90d4a-6a13-4147-9135-3e66190c927f . DCHS2 NM_001142552 exon1 c.1807_1838del p.603_613del . . 108.0 15.0 102.0 0.0 . 594 . . Atlas-INDEL