Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MAP7D1 55700 hgsc.bcm.edu hg19 1 36643703 36643703 + Missense_Mutation SNP A A G rs200892098 TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 .,2 MAP7D1 NM_018067 exon9 c.A1609G p.K537E AACGAGAAGGAGT . 7.0 7.0 1.0 1.0 . 62 . . Atlas-SNP ITGA10 8515 hgsc.bcm.edu hg19 1 145537466 145537466 + Missense_Mutation SNP G G C novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . ITGA10 NM_003637 exon20 c.G2476C p.V826L GTGCTGGTATCTA . 68.0 6.0 110.0 0.0 . 131 . . Atlas-SNP SLAMF9 89886 hgsc.bcm.edu hg19 1 159923926 159923926 + Missense_Mutation SNP A A G rs147539315 TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . SLAMF9 NM_033438 exon1 c.T2C p.M1T GCACACATGTCAG . 36.0 8.0 45.0 0.0 . 41 . A|1.000;G|0.000 Atlas-SNP ATL2 64225 hgsc.bcm.edu hg19 2 38604337 38604337 + Silent SNP C C T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . ATL2 NM_001135673 exon1 c.G66A p.R22R GCTGGTCCGTCGC . 162.0 15.0 151.0 0.0 . 49 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613036 73613036 + Missense_Mutation SNP G G C novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . ALMS1 NM_015120 exon1 c.G40C p.E14Q CTGGAGGAGGAGG . 331.0 31.0 191.0 0.0 . 384 . . Atlas-SNP C2orf66 401027 hgsc.bcm.edu hg19 2 197672293 197672293 + Silent SNP T T A novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . C2orf66 NM_213608 exon2 c.A228T p.T76T TGGAAATGTTCCA . 36.0 6.0 150.0 0.0 . 15 . . Atlas-SNP PRRT3 285368 hgsc.bcm.edu hg19 3 9989661 9989661 + Missense_Mutation SNP C C T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . PRRT3 NM_207351 exon4 c.G1196A p.R399H TGGGGGCGCCCCG . 50.0 12.0 60.0 0.0 . 35 . . Atlas-SNP ZNF35 7584 hgsc.bcm.edu hg19 3 44692628 44692628 + Silent SNP G G A novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . ZNF35 NM_003420 exon2 c.G69A p.E23E GGAGGAGGAAGAA . 158.0 16.0 295.0 0.0 . 34 . . Atlas-SNP SLC9C1 285335 hgsc.bcm.edu hg19 3 111940054 111940054 + Missense_Mutation SNP A A G novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . . NM_183061 exon14 c.T1591C p.Y531H TCCTGTATTGTCT . 30.0 5.0 60.0 0.0 . . . . Atlas-SNP COPG1 22820 hgsc.bcm.edu hg19 3 128986867 128986867 + Silent SNP A A G novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . . NM_016128 exon16 c.A1632G p.A544A TAATGCAGGCTAT . 52.0 20.0 94.0 0.0 . . . . Atlas-SNP MAN2B2 23324 hgsc.bcm.edu hg19 4 6611736 6611736 + Missense_Mutation SNP C C T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 MAN2B2,colon,carcinoma,0,1 MAN2B2 NM_015274 exon13 c.C2218T p.R740W ATGCAGCGGAGGC . 82.0 21.0 132.0 0.0 . 80 . . Atlas-SNP PCDHGB2 56103 hgsc.bcm.edu hg19 5 140741078 140741078 + Missense_Mutation SNP T T C novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . PCDHGB2 NM_018923 exon1 c.T1376C p.V459A ACATGGTTCACGT . 81.0 19.0 118.0 0.0 . 196 . . Atlas-SNP PCDHGA6 56109 hgsc.bcm.edu hg19 5 140755848 140755848 + Missense_Mutation SNP C C T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . PCDHGA6 NM_018919 exon1 c.C2198T p.A733V GCTTAGCGAGCAT . 141.0 36.0 149.0 0.0 . 219 . . Atlas-SNP OR2J3 442186 hgsc.bcm.edu hg19 6 29080267 29080267 + Silent SNP G G T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . OR2J3 NM_001005216 exon1 c.G600T p.L200L TGAGCTGACCCTC . 50.0 14.0 129.0 0.0 . 53 . . Atlas-SNP TRIM10 10107 hgsc.bcm.edu hg19 6 30121906 30121906 + Missense_Mutation SNP C C T rs137941157 bycluster;byfrequency;alternate_allele TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . TRIM10 NM_006778 exon7 c.G1286A p.R429Q ACCTGCCGGGGCT . 93.0 16.0 132.0 0.0 . 65 . C|1.000;A|0.000 Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 66042220 66042220 + Silent SNP T T A novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . EYS NM_001142801 exon12 c.A1857T p.I619I AACTTATATTCTT . 29.0 6.0 70.0 0.0 . 527 . . Atlas-SNP TBP 6908 hgsc.bcm.edu hg19 6 170871004 170871004 + Silent SNP G G A novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . TBP NM_003194 exon3 c.G180A p.Q60Q GCAGCAGCAACAA . 36.0 8.0 61.0 0.0 . 58 . . Atlas-SNP RSBN1L 222194 hgsc.bcm.edu hg19 7 77326048 77326048 + Missense_Mutation SNP T T G novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . RSBN1L NM_198467 exon1 c.T262G p.F88V TGGAGCTTTGCCC . 81.0 27.0 75.0 0.0 . 74 . . Atlas-SNP RUNX1T1 862 hgsc.bcm.edu hg19 8 93003968 93003968 + Missense_Mutation SNP G G A novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . RUNX1T1 NM_001198679 exon7 c.C1067T p.P356L TGCTGAGGTGGAG . 101.0 35.0 119.0 0.0 . 516 . . Atlas-SNP TSPYL5 85453 hgsc.bcm.edu hg19 8 98289975 98289975 + Missense_Mutation SNP G G A novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . TSPYL5 NM_033512 exon1 c.C98T p.P33L TCGCGCGGGGCGT . 144.0 22.0 61.0 0.0 . 48 . . Atlas-SNP COL15A1 1306 hgsc.bcm.edu hg19 9 101816900 101816900 + Missense_Mutation SNP A A G novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . COL15A1 NM_001855 exon32 c.A2993G p.K998R GCTCAAAGGGAGA . 83.0 4.0 218.0 0.0 . 211 . . Atlas-SNP MSANTD3 91283 hgsc.bcm.edu hg19 9 103204372 103204372 + Missense_Mutation SNP C C T rs139409577 TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . MSANTD3 NM_001198805 exon2 c.C152T p.A51V GGCAGGCGCTGGC . 33.0 13.0 90.0 0.0 . 10 . C|1.000;T|0.000 Atlas-SNP GPR158 57512 hgsc.bcm.edu hg19 10 25887911 25887911 + Missense_Mutation SNP A A C novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . GPR158 NM_020752 exon11 c.A3356C p.E1119A GCGAAGAACTGCC . 46.0 19.0 108.0 0.0 . 255 . . Atlas-SNP WDFY4 57705 hgsc.bcm.edu hg19 10 49982595 49982595 + Missense_Mutation SNP G G T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . WDFY4 NM_020945 exon14 c.G2646T p.L882F AGGCTTGCTTGGG . 58.0 22.0 77.0 0.0 . 205 . . Atlas-SNP PDZD7 79955 hgsc.bcm.edu hg19 10 102770293 102770293 + Missense_Mutation SNP T T G novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . PDZD7 NM_001195263 exon15 c.A2353C p.S785R CCCGGCTGCTGCG . 413.0 20.0 351.0 0.0 . 101 . . Atlas-SNP PDCD11 22984 hgsc.bcm.edu hg19 10 105203771 105203771 + Missense_Mutation SNP G G T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . PDCD11 NM_014976 exon34 c.G5224T p.A1742S CAGGCTGCAGCCA . 42.0 12.0 79.0 0.0 . 160 . . Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129914055 129914055 + Missense_Mutation SNP A A G novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . MKI67 NM_002417 exon7 c.T617C p.I206T CTGGAAATTTCTT . 24.0 4.0 44.0 0.0 . 363 . . Atlas-SNP PYGM 5837 hgsc.bcm.edu hg19 11 64518935 64518935 + Missense_Mutation SNP C C T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . PYGM NM_005609 exon16 c.G1831A p.A611T CAGGTGCAGCCTG . 70.0 21.0 90.0 0.0 . 77 . . Atlas-SNP CACNA1C 775 hgsc.bcm.edu hg19 12 2800310 2800310 + Missense_Mutation SNP G G T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . CACNA1C NM_199460 exon50 c.G6611T p.G2204V CGCGGGGTCGACC . 114.0 34.0 175.0 0.0 . 1023 . . Atlas-SNP NACA 4666 hgsc.bcm.edu hg19 12 57113526 57113526 + Silent SNP C C T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . NACA NM_001113203 exon3 c.G1788A p.G596G AGGCTCCCCAAGG . 77.0 16.0 159.0 0.0 . 131 . . Atlas-SNP CUX2 23316 hgsc.bcm.edu hg19 12 111772269 111772269 + Missense_Mutation SNP C C T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . CUX2 NM_015267 exon19 c.C2951T p.S984L GGTCCTCACCATC . 76.0 11.0 126.0 0.0 . 145 . . Atlas-SNP SPERT 220082 hgsc.bcm.edu hg19 13 46287798 46287798 + Missense_Mutation SNP G G A novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . SPERT NM_152719 exon3 c.G638A p.R213Q AGAGCCGGGCCCC . 38.0 9.0 38.0 0.0 . 54 . . Atlas-SNP WDR90 197335 hgsc.bcm.edu hg19 16 717526 717526 + Silent SNP C C T rs373944645 TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . WDR90 NM_145294 exon41 c.C5184T p.S1728S ACCGTCCGCCAGG . 23.0 10.0 33.0 0.0 . 107 . . Atlas-SNP UNC45B 146862 hgsc.bcm.edu hg19 17 33513464 33513464 + Missense_Mutation SNP C C G novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . UNC45B NM_173167 exon20 c.C2682G p.I894M GGAGATCCTGACT . 66.0 15.0 127.0 0.0 . 133 . . Atlas-SNP KRT24 192666 hgsc.bcm.edu hg19 17 38858134 38858134 + Missense_Mutation SNP C C G novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 KRT24,NS,lymphoid_neoplasm,0,1 KRT24 NM_019016 exon2 c.G667C p.A223P ATCTGGCATTGTC . 188.0 12.0 500.0 0.0 . 60 . . Atlas-SNP KRT24 192666 hgsc.bcm.edu hg19 17 38858135 38858135 + Missense_Mutation SNP A A C novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 .,1 KRT24 NM_019016 exon2 c.T666G p.N222K TCTGGCATTGTCA . 190.0 15.0 496.0 0.0 . 60 . . Atlas-SNP RPTOR 57521 hgsc.bcm.edu hg19 17 78796082 78796082 + Silent SNP G G A rs375226529 TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . RPTOR NM_001163034 exon8 c.G972A p.A324A CATCGCGTGGAAC . 94.0 29.0 95.0 0.0 . 122 . . Atlas-SNP C3 718 hgsc.bcm.edu hg19 19 6713207 6713207 + Silent SNP C C T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . C3 NM_000064 exon9 c.G996A p.L332L TGAGTGCAAGATG . 72.0 19.0 95.0 0.0 . 192 . . Atlas-SNP CACNA1A 773 hgsc.bcm.edu hg19 19 13318671 13318671 + Missense_Mutation SNP G G T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . CACNA1A NM_001127222 exon47 c.C6977A p.A2326E GCCACCGCCTGCT . 482.0 23.0 425.0 0.0 . 715 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38976748 38976748 + Missense_Mutation SNP C C T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 RYR1,NS,carcinoma,0,1 RYR1 NM_001042723 exon34 c.C5453T p.A1818V GGGAGGCGGTGCG . 49.0 6.0 99.0 0.0 . 708 . . Atlas-SNP APP 351 hgsc.bcm.edu hg19 21 27369713 27369713 + Missense_Mutation SNP T T C novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . APP NM_000484 exon8 c.A1052G p.K351R GTAGTCTTGAGTA . 60.0 11.0 137.0 0.0 . 90 . . Atlas-SNP CENPF 1063 hgsc.bcm.edu hg19 1 214819555 214819558 + Frame_Shift_Del DEL TCTG TCTG - novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 TCTG TCTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . CENPF NM_016343 exon13 c.6641_6644del p.2214_2215del . . 223.0 14.0 332.0 0.0 . 321 . . Atlas-INDEL IQCA1 79781 hgsc.bcm.edu hg19 2 237327837 237327839 + In_Frame_Del DEL GGG GGG - novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 GGG GGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . IQCA1 NM_001270585 exon8 c.1109_1111del p.370_371del . . 260.0 17.0 501.0 0.0 . 170 . . Atlas-INDEL IQCA1 79781 hgsc.bcm.edu hg19 2 237327828 237327830 + In_Frame_Del DEL GGC GGC - novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 GGC GGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . IQCA1 NM_001270585 exon8 c.1118_1120del p.373_374del . . 275.0 17.0 508.0 0.0 . 170 . . Atlas-INDEL XIRP2 129446 hgsc.bcm.edu hg19 2 168105575 168105577 + In_Frame_Del DEL TTG TTG - novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 TTG TTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . XIRP2 NM_152381 exon9 c.7672_7674del p.2558_2558del . . 140.0 12.0 299.0 0.0 . 914 . . Atlas-INDEL CCDC18 343099 hgsc.bcm.edu hg19 1 93672688 93672690 + In_Frame_Del DEL CGG CGG - novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 CGG CGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . CCDC18 NM_206886 exon9 c.941_943del p.314_315del . . 115.0 12.0 479.0 0.0 . 93 . . Atlas-INDEL LSS 4047 hgsc.bcm.edu hg19 21 47647474 47647475 + Frame_Shift_Ins INS - - T novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . LSS NM_001145436 exon3 c.311_312insA p.L104fs . . 56.0 13.0 119.0 0.0 . 50 . . Atlas-INDEL HOOK2 29911 hgsc.bcm.edu hg19 19 12880808 12880808 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAVW-01A-11D-A40R-10 TCGA-DD-AAVW-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq da6c81eb-ba15-434a-ad41-00e436b1f3da ded7e2a3-f782-4a5f-88a5-ea073d078eb9 . HOOK2 NM_001100176 exon11 c.992delT p.V331fs . . 59.0 13.0 41.0 0.0 . 73 . . Atlas-INDEL