Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
HEYL	26508	hgsc.bcm.edu	hg19	1	40092821	40092821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	HEYL	NM_014571	exon5	c.C345A	p.D115E	CCGGAAGTCAACT	.	85.0	53.0	161.0	0.0	.	27	.	.	Atlas-SNP
SV2A	9900	hgsc.bcm.edu	hg19	1	149885087	149885087	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	SV2A	NM_014849	exon2	c.C306T	p.P102P	TGCCCGGGGAATG	.	131.0	75.0	98.0	0.0	.	123	.	.	Atlas-SNP
SNX27	81609	hgsc.bcm.edu	hg19	1	151665429	151665429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	SNX27	NM_030918	exon10	c.G1432A	p.D478N	CGATGGGACACAG	.	236.0	63.0	173.0	0.0	.	44	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11775439	11775439	+	Missense_Mutation	SNP	G	G	T	rs200590869	bycluster;alternate_allele	TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	GREB1	NM_014668	exon30	c.G5254T	p.A1752S	CACAGCGCCGGCC	.	62.0	28.0	67.0	0.0	.	308	.	.	Atlas-SNP
ATAD2B	54454	hgsc.bcm.edu	hg19	2	24021162	24021162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	ATAD2B	NM_001242338	exon19	c.G2486A	p.S829N	ACAATACTAGGTA	.	322.0	114.0	362.0	1.0	.	110	.	.	Atlas-SNP
CFC1B	653275	hgsc.bcm.edu	hg19	2	131356332	131356332	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	.	NM_001079530	exon3	c.C130G	p.Q44E	GCTTCTGAGTGGC	.	1179.0	177.0	945.0	0.0	.	.	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141294168	141294168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	LRP1B	NM_018557	exon46	c.G7624A	p.E2542K	GTTTTTCATCTGA	.	200.0	42.0	130.0	0.0	.	1315	.	.	Atlas-SNP
SLC25A12	8604	hgsc.bcm.edu	hg19	2	172641967	172641967	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	SLC25A12	NM_003705	exon18	c.A1854G	p.E618E	TGTTGGTTCTGAA	.	217.0	49.0	137.0	0.0	.	59	.	.	Atlas-SNP
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098961	178098961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	NFE2L2	NM_006164	exon2	c.A84G	p.I28M	AAGATCTATATCT	.	54.0	11.0	57.0	0.0	.	225	.	.	Atlas-SNP
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098968	178098968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	NFE2L2,NS,carcinoma,-1,2	NFE2L2	NM_006164	exon2	c.A77G	p.Q26R	ATATCTTGCCTCC	.	50.0	9.0	52.0	0.0	.	225	.	.	Atlas-SNP
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098972	178098972	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	NFE2L2	NM_006164	exon2	c.A73T	p.R25W	CTTGCCTCCAAAG	.	47.0	8.0	48.0	0.0	.	225	.	.	Atlas-SNP
PLEKHA3	65977	hgsc.bcm.edu	hg19	2	179365879	179365879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	PLEKHA3	NM_019091	exon7	c.G751A	p.D251N	TGTAGTGATATTC	.	333.0	87.0	249.0	0.0	.	25	.	.	Atlas-SNP
CTLA4	1493	hgsc.bcm.edu	hg19	2	204736111	204736111	+	Silent	SNP	G	G	A	rs200657280	bycluster	TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	CTLA4	NM_005214	exon3	c.G468A	p.P156P	AGAACCGTGCCCA	.	54.0	13.0	79.0	0.0	.	24	.	G|0.999;A|0.001	Atlas-SNP
IFT57	55081	hgsc.bcm.edu	hg19	3	107886700	107886700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	IFT57	NM_018010	exon7	c.C789G	p.I263M	AACATGGATTCTC	.	98.0	30.0	71.0	0.0	.	44	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62598783	62598783	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	LPHN3	NM_015236	exon5	c.A706T	p.R236W	CGGACTAGGATAA	.	79.0	5.0	84.0	0.0	.	800	.	.	Atlas-SNP
IRF2	3660	hgsc.bcm.edu	hg19	4	185309971	185309971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	IRF2,colon,carcinoma,0,1	IRF2	NM_002199	exon9	c.C991T	p.R331W	TGGCCCGGGTCTC	.	61.0	37.0	101.0	0.0	.	53	.	.	Atlas-SNP
IRX1	79192	hgsc.bcm.edu	hg19	5	3600742	3600742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	IRX1	NM_024337	exon3	c.G1332T	p.R444S	CCCCAGGCCAGAT	.	88.0	28.0	92.0	0.0	.	106	.	.	Atlas-SNP
EGFLAM	133584	hgsc.bcm.edu	hg19	5	38427168	38427168	+	Missense_Mutation	SNP	C	C	G	rs370628892	alternate_allele	TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	EGFLAM	NM_001205301	exon14	c.C1868G	p.P623R	CAACTCCCTGGCC	.	66.0	24.0	43.0	0.0	.	302	.	.	Atlas-SNP
FNIP1	96459	hgsc.bcm.edu	hg19	5	131013525	131013525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	FNIP1	NM_133372	exon13	c.C1390T	p.L464F	AGGCAAGATGATT	.	69.0	18.0	91.0	0.0	.	104	.	.	Atlas-SNP
TNIP1	10318	hgsc.bcm.edu	hg19	5	150415262	150415262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	TNIP1	NM_001252385	exon14	c.A1402G	p.I468V	CGAAGATCTTCAC	.	36.0	11.0	41.0	0.0	.	51	.	.	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7580097	7580097	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	DSP	NM_004415	exon23	c.C3674G	p.S1225C	AGATATCCATGCA	.	300.0	193.0	183.0	0.0	.	306	.	.	Atlas-SNP
SLC17A4	10050	hgsc.bcm.edu	hg19	6	25776923	25776923	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	SLC17A4	NM_005495	exon9	c.T1088A	p.L363H	TCAGACTCATCAC	.	173.0	30.0	115.0	0.0	.	79	.	.	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	hg19	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	RUNX2	NM_001024630	exon3	c.A195G	p.Q65Q	GCAGCAACAGCAG	.	103.0	5.0	48.0	0.0	.	128	.	.	Atlas-SNP
RP9	6100	hgsc.bcm.edu	hg19	7	33136968	33136968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	RP9	NM_203288	exon4	c.G320A	p.R107H	TTGCAACGCCAAC	.	59.0	19.0	54.0	0.0	.	19	.	.	Atlas-SNP
MELK	9833	hgsc.bcm.edu	hg19	9	36589546	36589546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	MELK	NM_001256688	exon4	c.G158T	p.R53L	TGCCCCGGATCAA	.	63.0	25.0	81.0	0.0	.	74	.	.	Atlas-SNP
NRP1	8829	hgsc.bcm.edu	hg19	10	33510747	33510747	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	NRP1	NM_001244973	exon8	c.A1182G	p.V394V	GGGGAATACTGCA	.	116.0	45.0	129.0	0.0	.	126	.	.	Atlas-SNP
VSTM4	196740	hgsc.bcm.edu	hg19	10	50255074	50255074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	VSTM4,NS,carcinoma,0,1	VSTM4	NM_001031746	exon7	c.C791A	p.T264K	TGGAACGTGGGGG	.	125.0	38.0	128.0	0.0	.	83	.	.	Atlas-SNP
BTAF1	9044	hgsc.bcm.edu	hg19	10	93744021	93744021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	BTAF1	NM_003972	exon19	c.T2287C	p.Y763H	CATTTATATTATG	.	76.0	24.0	105.0	0.0	.	148	.	.	Atlas-SNP
TSSC4	10078	hgsc.bcm.edu	hg19	11	2424065	2424065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	TSSC4	NM_005706	exon2	c.C202T	p.P68S	CCCTCACCCCCGT	.	81.0	33.0	80.0	0.0	.	19	.	.	Atlas-SNP
OR52B4	143496	hgsc.bcm.edu	hg19	11	4389234	4389234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	OR52B4	NM_001005161	exon1	c.C292T	p.R98C	TGCAACGATCCAG	.	128.0	49.0	137.0	0.0	.	56	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62295933	62295933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	AHNAK	NM_001620	exon5	c.A5956G	p.T1986A	TGGGGGTCTTGAA	.	109.0	8.0	102.0	0.0	.	532	.	.	Atlas-SNP
CCDC84	338657	hgsc.bcm.edu	hg19	11	118886070	118886070	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	CCDC84	NM_198489	exon10	c.G859C	p.D287H	AACTTTGATCACA	.	118.0	42.0	128.0	0.0	.	21	.	.	Atlas-SNP
TAS2R50	259296	hgsc.bcm.edu	hg19	12	11138987	11138987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	TAS2R50	NM_176890	exon1	c.A473G	p.Y158C	CCTTCATATTCTT	.	123.0	41.0	120.0	0.0	.	37	.	.	Atlas-SNP
PHLDA1	22822	hgsc.bcm.edu	hg19	12	76424919	76424919	+	Silent	SNP	C	C	T	rs371223910		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	PHLDA1,caecum,carcinoma,0,2	PHLDA1	NM_007350	exon1	c.G603A	p.Q201Q	TTGTTGCTGCTGC	.	23.0	2.0	28.0	0.0	.	39	.	.	Atlas-SNP
SH2B3	10019	hgsc.bcm.edu	hg19	12	111885580	111885580	+	Missense_Mutation	SNP	G	G	T	rs74163667	alternate_allele	TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	SH2B3	NM_005475	exon7	c.G1357T	p.A453S	GGCGCCGCCTGTG	.	64.0	4.0	57.0	0.0	.	62	.	.	Atlas-SNP
NPAS3	64067	hgsc.bcm.edu	hg19	14	34269937	34269937	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	NPAS3	NM_001164749	exon12	c.G2424A	p.R808R	GCACAGGGTGACC	.	39.0	9.0	41.0	0.0	.	266	.	.	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	hg19	15	56388062	56388062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	RFX7	NM_022841	exon9	c.A1864G	p.I622V	GAGTGATAGTGCT	.	23.0	9.0	21.0	0.0	.	170	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63916053	63916053	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	HERC1	NM_003922	exon73	c.G13482A	p.A4494A	TTGTCTCGCTATT	.	72.0	24.0	61.0	0.0	.	624	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	354369	354369	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	AXIN1	NM_181050	exon5	c.G1189T	p.E397X	CAGCCTCCAGGCG	.	71.0	44.0	105.0	0.0	.	290	.	.	Atlas-SNP
RNF167	26001	hgsc.bcm.edu	hg19	17	4848077	4848077	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	RNF167	NM_015528	exon10	c.G819A	p.Q273Q	CAAGCAGCCTGTT	.	114.0	38.0	119.0	0.0	.	14	.	.	Atlas-SNP
ALOX15B	247	hgsc.bcm.edu	hg19	17	7951790	7951790	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	ALOX15B	NM_001141	exon14	c.G1938C	p.Q646H	GGCCCAGATCTCG	.	47.0	19.0	55.0	0.0	.	66	.	.	Atlas-SNP
ZNF830	91603	hgsc.bcm.edu	hg19	17	33288644	33288644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	ZNF830	NM_052857	exon1	c.A59G	p.E20G	AGGAAGAATTGCG	.	144.0	49.0	159.0	0.0	.	26	.	.	Atlas-SNP
WNK4	65266	hgsc.bcm.edu	hg19	17	40947049	40947049	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	WNK4	NM_032387	exon14	c.C2610A	p.P870P	CACACCCGAGTTT	.	122.0	44.0	121.0	0.0	.	182	.	.	Atlas-SNP
TMEM241	85019	hgsc.bcm.edu	hg19	18	21001406	21001406	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	.	NM_032933	exon3	c.G122A	p.W41X	GTCTGCCACCTGG	.	80.0	33.0	61.0	0.0	.	.	.	.	Atlas-SNP
CDH19	28513	hgsc.bcm.edu	hg19	18	64212133	64212133	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	CDH19	NM_021153	exon6	c.C783T	p.Y261Y	CAAGCGGTATAAA	.	54.0	21.0	53.0	0.0	.	141	.	.	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	hg19	19	2413945	2413945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	TMPRSS9	NM_182973	exon9	c.G1400A	p.S467N	TGGTCAGCACCCC	.	63.0	24.0	65.0	0.0	.	79	.	.	Atlas-SNP
LGI4	163175	hgsc.bcm.edu	hg19	19	35617194	35617194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	LGI4	NM_139284	exon8	c.C1279T	p.R427C	TGTAGCGTGTGAG	.	146.0	60.0	129.0	0.0	.	32	.	.	Atlas-SNP
CYP2A7	1549	hgsc.bcm.edu	hg19	19	41383137	41383137	+	Missense_Mutation	SNP	C	C	A	rs148915421	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	CYP2A7	NM_000764	exon7	c.G1119T	p.R373S	TTTAACCCTGCGG	.	207.0	69.0	204.0	0.0	.	71	.	C|0.978;T|0.022	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9561354	9561354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	PAK7	NM_177990	exon4	c.C428A	p.T143N	TTTTCGGTCGTGT	.	144.0	58.0	136.0	0.0	.	194	.	.	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	hg19	20	61436212	61436212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	OGFR	NM_007346	exon1	c.A1G	p.M1V	CCGAGCATGGACG	.	100.0	6.0	94.0	0.0	.	63	.	.	Atlas-SNP
TAF9B	51616	hgsc.bcm.edu	hg19	X	77393271	77393271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	TAF9B	NM_015975	exon4	c.A380G	p.Y127C	AGCCTATAGTTTG	.	223.0	170.0	233.0	1.0	.	30	.	.	Atlas-SNP
PCDHA1	56147	hgsc.bcm.edu	hg19	5	140166927	140166927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	PCDHA1	NM_031411	exon1	c.1051delG	p.A351fs	.	.	150.0	50.0	126.0	0.0	.	387	.	.	Atlas-INDEL
HSD11B1	3290	hgsc.bcm.edu	hg19	1	209879256	209879256	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	HSD11B1	NM_001206741	exon3	c.188delT	p.V63fs	.	.	124.0	21.0	95.0	0.0	.	35	.	.	Atlas-INDEL
KRT2	3849	hgsc.bcm.edu	hg19	12	53045636	53045637	+	In_Frame_Ins	INS	-	-	CCAAAGCCGCTGCCGCCT	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.,1	KRT2	NM_000423	exon1	c.291_292insAGGCGGCAGCGGCTTTGG	p.G97delinsGGGSGFG	.	.	175.0	65.0	155.0	0.0	.	94	.	.	Atlas-INDEL
MYOM1	8736	hgsc.bcm.edu	hg19	18	3187611	3187612	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	MYOM1	NM_003803	exon5	c.796_797insT	p.A266fs	.	.	91.0	29.0	103.0	0.0	.	192	.	.	Atlas-INDEL
EP400	57634	hgsc.bcm.edu	hg19	12	132512745	132512746	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-AAVS-01A-11D-A40R-10	TCGA-DD-AAVS-10A-01D-A40U-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	eb1a12bf-565b-47ad-b538-1b8bdcfb6f98	05aee9b3-772a-4c49-ac5b-c9d25f14da7e	.	EP400	NM_015409	exon27	c.5292_5293del	p.1764_1765del	.	.	85.0	35.0	114.0	0.0	.	370	.	.	Atlas-INDEL