Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm COL16A1 1307 hgsc.bcm.edu hg19 1 32131190 32131190 + Silent SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . COL16A1 NM_001856 exon55 c.C3486T p.G1162G CGGTGGGCCCGGA . 52.0 10.0 50.0 0.0 . 137 . . Atlas-SNP RBBP4 5928 hgsc.bcm.edu hg19 1 33134435 33134435 + Missense_Mutation SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . RBBP4 NM_005610 exon5 c.C580T p.L194F CACTTACTTAGTG . 78.0 17.0 75.0 0.0 . 38 . . Atlas-SNP ASB17 127247 hgsc.bcm.edu hg19 1 76397785 76397785 + Silent SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 ASB17,NS,carcinoma,-2,1 ASB17 NM_080868 exon1 c.C192T p.D64D TAGTGCGTCAAAA . 147.0 19.0 180.0 0.0 . 53 . . Atlas-SNP RPL5 6125 hgsc.bcm.edu hg19 1 93299205 93299205 + Missense_Mutation SNP T T A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 .,1 RPL5 NM_000969 exon3 c.T177A p.D59E CAGAGATATCATT . 48.0 8.0 67.0 0.0 . 38 . . Atlas-SNP BNIPL 149428 hgsc.bcm.edu hg19 1 151019153 151019153 + Missense_Mutation SNP G G C novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . BNIPL NM_138278 exon10 c.G1064C p.G355A GCTCAGGAGGGAC . 110.0 29.0 101.0 0.0 . 45 . . Atlas-SNP PLB1 151056 hgsc.bcm.edu hg19 2 28763246 28763246 + Missense_Mutation SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . PLB1 NM_001170585 exon12 c.C745T p.P249S CCAGAGCCCTGTA . 35.0 10.0 45.0 0.0 . 255 . . Atlas-SNP FSHR 2492 hgsc.bcm.edu hg19 2 49190880 49190880 + Missense_Mutation SNP C C A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . FSHR NM_000145 exon10 c.G1080T p.M360I GTACCCCATGATA . 134.0 12.0 147.0 0.0 . 164 . . Atlas-SNP FBLN7 129804 hgsc.bcm.edu hg19 2 112922614 112922614 + Missense_Mutation SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . FBLN7 NM_153214 exon3 c.G272A p.R91K ACGGCAGAAAGTT . 85.0 25.0 103.0 0.0 . 49 . . Atlas-SNP BAZ2B 29994 hgsc.bcm.edu hg19 2 160269055 160269055 + Missense_Mutation SNP C C A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . BAZ2B NM_013450 exon14 c.G2468T p.G823V TGCATTCCCTTTT . 77.0 15.0 76.0 0.0 . 196 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168103526 168103526 + Missense_Mutation SNP T T C novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . XIRP2 NM_152381 exon9 c.T5624C p.L1875P AGTCACTTAAAGA . 189.0 52.0 181.0 0.0 . 914 . . Atlas-SNP USP40 55230 hgsc.bcm.edu hg19 2 234402122 234402122 + Missense_Mutation SNP T T C rs368100283 TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . USP40 NM_018218 exon24 c.A2899G p.T967A AGTTGGTCTGGTC . 157.0 35.0 183.0 0.0 . 174 . . Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52436363 52436363 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . BAP1 NM_004656 exon17 c.A2131T p.K711X GCTGCTTGTGGAG . 60.0 15.0 52.0 0.0 . 371 . . Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52442612 52442612 + Missense_Mutation SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 BAP1,upper_arm,benign_melanocytic_nevus,0,1 BAP1 NM_004656 exon4 c.G133A p.G45R TAAATCCATATAC . 111.0 30.0 132.0 0.0 . 371 . . Atlas-SNP CCDC54 84692 hgsc.bcm.edu hg19 3 107096716 107096716 + Silent SNP C C A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . CCDC54 NM_032600 exon1 c.C282A p.V94V AAAAGTCCAGGAA . 118.0 24.0 108.0 0.0 . 56 . . Atlas-SNP NDUFB4 4710 hgsc.bcm.edu hg19 3 120320137 120320137 + Silent SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . NDUFB4 NM_001168331 exon2 c.G360A p.E120E ATTTGAGTGATAG . 33.0 9.0 39.0 0.0 . 21 . . Atlas-SNP ALG1L 200810 hgsc.bcm.edu hg19 3 125648374 125648374 + Missense_Mutation SNP G G C rs200222793 bycluster;alternate_allele TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . ALG1L NM_001195223 exon7 c.C445G p.L149V GGTTTAGCTTGCC . 129.0 31.0 143.0 0.0 . 12 . G|0.999;T|0.001 Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3230458 3230458 + Silent SNP T T C novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . HTT NM_002111 exon58 c.T7965C p.S2655S CACGTCTCCAGTC . 94.0 15.0 102.0 0.0 . 221 . . Atlas-SNP EVC 2121 hgsc.bcm.edu hg19 4 5747031 5747031 + Missense_Mutation SNP A A G novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . EVC NM_153717 exon7 c.A902G p.K301R TGGAAAAGAAGGA . 110.0 19.0 110.0 0.0 . 90 . . Atlas-SNP NFXL1 152518 hgsc.bcm.edu hg19 4 47850263 47850263 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . NFXL1 NM_152995 exon23 c.C2653T p.Q885X GTTTTTGCCATAG . 71.0 11.0 71.0 0.0 . 79 . . Atlas-SNP GPRIN3 285513 hgsc.bcm.edu hg19 4 90170448 90170448 + Missense_Mutation SNP T T C novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . GPRIN3 NM_198281 exon2 c.A814G p.S272G GTTCGCTAGTGAG . 52.0 12.0 65.0 0.0 . 90 . . Atlas-SNP PET112 5188 hgsc.bcm.edu hg19 4 152637251 152637251 + Missense_Mutation SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 PET112,NS,carcinoma,0,1 PET112 NM_004564 exon5 c.G673A p.D225N ACATGTCGGGCTC . 125.0 22.0 138.0 0.0 . 43 . . Atlas-SNP GFM2 84340 hgsc.bcm.edu hg19 5 74018369 74018369 + Missense_Mutation SNP A A C novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . GFM2 NM_032380 exon20 c.T2046G p.D682E TTGCTTATCAGCT . 109.0 18.0 105.0 0.0 . 38 . . Atlas-SNP SH3PXD2B 285590 hgsc.bcm.edu hg19 5 171766054 171766054 + Silent SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . SH3PXD2B NM_001017995 exon13 c.C2055T p.G685G CTGGGGGCCCTCC . 96.0 16.0 71.0 0.0 . 91 . . Atlas-SNP HIST1H4C 8364 hgsc.bcm.edu hg19 6 26104199 26104199 + Silent SNP A A T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . HIST1H4C NM_003542 exon1 c.A24T p.G8G AGGCGGAAAAGGC . 93.0 11.0 77.0 0.0 . 14 . . Atlas-SNP DPCR1 135656 hgsc.bcm.edu hg19 6 30920202 30920202 + Missense_Mutation SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . DPCR1 NM_080870 exon2 c.C3961T p.P1321S TCATTCCCTGCAT . 107.0 15.0 91.0 0.0 . 99 . . Atlas-SNP UBR2 23304 hgsc.bcm.edu hg19 6 42637952 42637952 + Missense_Mutation SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . UBR2 NM_015255 exon35 c.G4004A p.S1335N GGGGTAGCTGCGC . 201.0 27.0 152.0 0.0 . 134 . . Atlas-SNP KLHL32 114792 hgsc.bcm.edu hg19 6 97561870 97561870 + Missense_Mutation SNP G G T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . KLHL32 NM_052904 exon7 c.G839T p.R280L AGACTCGCAGGAC . 130.0 23.0 152.0 0.0 . 85 . . Atlas-SNP SCIN 85477 hgsc.bcm.edu hg19 7 12610443 12610443 + Missense_Mutation SNP G G T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . SCIN NM_001112706 exon1 c.G31T p.A11S GAGTTCGCCCGGG . 84.0 12.0 77.0 0.0 . 105 . . Atlas-SNP SP8 221833 hgsc.bcm.edu hg19 7 20825271 20825271 + Silent SNP C C A rs145875827 alternate_allele TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . SP8 NM_182700 exon2 c.G165T p.S55S AGAGGACGAGGAG . 77.0 14.0 88.0 0.0 . 43 . C|1.000;T|0.000 Atlas-SNP ELN 2006 hgsc.bcm.edu hg19 7 73452038 73452038 + Silent SNP G G A rs376512299 TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 ELN,NS,haematopoietic_neoplasm,0,1 ELN NM_001081753 exon4 c.G165A p.A55A TGCAGCGCTGGGG . 100.0 24.0 80.0 0.0 . 81 . . Atlas-SNP ZNF804B 219578 hgsc.bcm.edu hg19 7 88963559 88963559 + Silent SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . ZNF804B NM_181646 exon4 c.C1263T p.S421S AGTTAGCAAAAAT . 85.0 17.0 86.0 0.0 . 322 . . Atlas-SNP TRPS1 7227 hgsc.bcm.edu hg19 8 116426762 116426762 + Missense_Mutation SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 TRPS1_ENST00000395715,caecum,carcinoma,0,4 TRPS1 NM_014112 exon7 c.G3374A p.R1125Q CAGAACCGCAGCC . 214.0 35.0 163.0 0.0 . 516 . . Atlas-SNP TMEM245 23731 hgsc.bcm.edu hg19 9 111882014 111882014 + Silent SNP C C A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . . NM_032012 exon1 c.G180T p.V60V GAACAGCACGGCC . 45.0 16.0 49.0 0.0 . . . . Atlas-SNP SETX 23064 hgsc.bcm.edu hg19 9 135205038 135205038 + Silent SNP T T G novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . SETX NM_015046 exon10 c.A1947C p.P649P TTTCATTGGTTCT . 68.0 12.0 62.0 0.0 . 234 . . Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134713078 134713078 + Missense_Mutation SNP A A T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . TTC40 NM_001200049 exon23 c.T3017A p.L1006Q AGTCGCAGCTGCT . 98.0 27.0 76.0 0.0 . 100 . . Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1093075 1093075 + Missense_Mutation SNP A A G novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . MUC2 NM_002457 exon30 c.A4894G p.I1632V ACAGCCATCACCA . 21.0 4.0 28.0 0.0 . 614 . . Atlas-SNP OR4A47 403253 hgsc.bcm.edu hg19 11 48510973 48510973 + Missense_Mutation SNP T T A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . OR4A47 NM_001005512 exon1 c.T629A p.L210Q TGTTTCTGCTCTT . 85.0 20.0 84.0 0.0 . 72 . . Atlas-SNP OR4D6 219983 hgsc.bcm.edu hg19 11 59224678 59224678 + Missense_Mutation SNP T T A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . OR4D6 NM_001004708 exon1 c.T245A p.L82Q AGTTCCTGGTGGA . 125.0 34.0 143.0 0.0 . 65 . . Atlas-SNP MAP4K2 5871 hgsc.bcm.edu hg19 11 64568236 64568236 + Missense_Mutation SNP C C A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . MAP4K2 NM_004579 exon10 c.G725T p.W242L CCTTACCAGCGAG . 37.0 13.0 35.0 0.0 . 83 . . Atlas-SNP OVOL1 5017 hgsc.bcm.edu hg19 11 65562094 65562094 + Missense_Mutation SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . OVOL1 NM_004561 exon3 c.G404A p.R135H TGAACCGCCACAT . 85.0 22.0 79.0 0.0 . 15 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103026161 103026161 + Silent SNP A A G novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . DYNC2H1 NM_001377 exon25 c.A3675G p.L1225L TAGTCTAGAGAAA . 134.0 28.0 119.0 0.0 . 246 . . Atlas-SNP ARID2 196528 hgsc.bcm.edu hg19 12 46231303 46231303 + Silent SNP T T G novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . ARID2 NM_152641 exon10 c.T1143G p.L381L AAATCTTTGCAAA . 112.0 26.0 105.0 0.0 . 311 . . Atlas-SNP COL2A1 1280 hgsc.bcm.edu hg19 12 48376330 48376330 + Silent SNP A A C novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . COL2A1 NM_001844 exon34 c.T2256G p.P752P CTCGCCAGGCATT . 66.0 18.0 94.0 0.0 . 368 . . Atlas-SNP CS 1431 hgsc.bcm.edu hg19 12 56669864 56669864 + Missense_Mutation SNP T T C novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . CS NM_004077 exon7 c.A704G p.D235G GACCAGTCCAGGT . 102.0 25.0 122.0 0.0 . 44 . . Atlas-SNP METAP2 10988 hgsc.bcm.edu hg19 12 95867960 95867960 + Missense_Mutation SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . METAP2 NM_006838 exon1 c.C5T p.A2V ACATGGCGGGTGT . 163.0 32.0 147.0 0.0 . 28 . . Atlas-SNP ZC3H13 23091 hgsc.bcm.edu hg19 13 46563046 46563046 + Silent SNP A A G novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . ZC3H13 NM_015070 exon9 c.T1131C p.H377H CAAAGAATGTGAA . 98.0 28.0 126.0 0.0 . 197 . . Atlas-SNP BCL11B 64919 hgsc.bcm.edu hg19 14 99640931 99640931 + Missense_Mutation SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . BCL11B NM_138576 exon4 c.G2242A p.G748S GGCTGCCGTTCTC . 29.0 10.0 26.0 0.0 . 108 . . Atlas-SNP FURIN 5045 hgsc.bcm.edu hg19 15 91423406 91423406 + Missense_Mutation SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . FURIN NM_002569 exon13 c.G1459A p.A487T GAGCACGCTCAGG . 82.0 19.0 105.0 0.0 . 85 . . Atlas-SNP GLIS2 84662 hgsc.bcm.edu hg19 16 4386759 4386759 + Missense_Mutation SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . GLIS2 NM_032575 exon6 c.G809A p.C270Y AGGGCTGCAACAA . 93.0 6.0 116.0 0.0 . 29 . . Atlas-SNP KIAA0556 23247 hgsc.bcm.edu hg19 16 27709794 27709794 + Silent SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . KIAA0556 NM_015202 exon9 c.G1086A p.K362K CAGAAAGGCCGAG . 60.0 17.0 72.0 0.0 . 348 . . Atlas-SNP SF3B3 23450 hgsc.bcm.edu hg19 16 70605100 70605100 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . SF3B3 NM_012426 exon25 c.A3511T p.K1171X CCTGTGAAGGTAG . 66.0 34.0 68.0 0.0 . 99 . . Atlas-SNP KIF1C 10749 hgsc.bcm.edu hg19 17 4927022 4927022 + Missense_Mutation SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . KIF1C NM_006612 exon23 c.G2888A p.R963H GGCTGCGCAGGCC . 82.0 4.0 104.0 0.0 . 70 . . Atlas-SNP ERBB2 2064 hgsc.bcm.edu hg19 17 37876052 37876052 + Silent SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . ERBB2 NM_004448 exon16 c.G1911A p.L637L GGACCTGGATGAC . 180.0 43.0 97.0 0.0 . 429 . . Atlas-SNP KRT10 3858 hgsc.bcm.edu hg19 17 38975319 38975319 + Missense_Mutation SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . KRT10 NM_000421 exon7 c.G1468A p.G490S CGTGGCCGCCGCC . 96.0 18.0 34.0 0.0 . 56 . . Atlas-SNP RAB5C 5878 hgsc.bcm.edu hg19 17 40277843 40277843 + Silent SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . RAB5C NM_001252039 exon7 c.G708A p.Q236Q GTTCTCCTGGAGG . 48.0 5.0 48.0 0.0 . 20 . . Atlas-SNP NGFR 4804 hgsc.bcm.edu hg19 17 47590143 47590143 + Silent SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . NGFR NM_002507 exon6 c.C1056T p.N352N TCTCAACGGCTCT . 172.0 7.0 173.0 0.0 . 46 . . Atlas-SNP KLC3 147700 hgsc.bcm.edu hg19 19 45848977 45848977 + Missense_Mutation SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . KLC3 NM_177417 exon2 c.G178A p.G60S GCAGCCGGCTTGG . 141.0 6.0 122.0 0.0 . 37 . . Atlas-SNP RIN2 54453 hgsc.bcm.edu hg19 20 19955803 19955803 + Silent SNP C C T rs370646119 TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . RIN2 NM_001242581 exon8 c.C1281T p.S427S CTTGAGCGGCGGC . 675.0 47.0 728.0 0.0 . 126 . . Atlas-SNP PCIF1 63935 hgsc.bcm.edu hg19 20 44571777 44571777 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . PCIF1 NM_022104 exon8 c.G715T p.E239X ATGCTGGAGCGCA . 51.0 16.0 63.0 0.0 . 51 . . Atlas-SNP ZBTB46 140685 hgsc.bcm.edu hg19 20 62421975 62421975 + Missense_Mutation SNP T T C novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . ZBTB46 NM_025224 exon2 c.A136G p.K46E CGTTCTTGTGCGC . 41.0 8.0 33.0 0.0 . 72 . . Atlas-SNP RWDD2B 10069 hgsc.bcm.edu hg19 21 30380106 30380106 + Missense_Mutation SNP C C G novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . RWDD2B NM_016940 exon4 c.G701C p.S234T CAGGCACTTTGTG . 54.0 14.0 52.0 0.0 . 24 . . Atlas-SNP TEX33 339669 hgsc.bcm.edu hg19 22 37395926 37395926 + Missense_Mutation SNP C C T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . TEX33 NM_001163857 exon4 c.G589A p.D197N AGTAGTCTGAGAA . 43.0 7.0 53.0 0.0 . 25 . . Atlas-SNP SBF1 6305 hgsc.bcm.edu hg19 22 50893272 50893272 + Missense_Mutation SNP T T A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . SBF1 NM_002972 exon35 c.A4783T p.N1595Y TGTAATTGTGGAA . 44.0 17.0 64.0 0.0 . 211 . . Atlas-SNP FRMPD4 9758 hgsc.bcm.edu hg19 X 12701706 12701706 + Silent SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . FRMPD4 NM_014728 exon6 c.G573A p.S191S AGTGTCGGTGAGT . 101.0 49.0 116.0 0.0 . 214 . . Atlas-SNP MED14 9282 hgsc.bcm.edu hg19 X 40526016 40526016 + Missense_Mutation SNP T T C novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . MED14 NM_004229 exon24 c.A3221G p.H1074R ATTCCATGCGAGG . 161.0 72.0 183.0 0.0 . 108 . . Atlas-SNP FGF16 8823 hgsc.bcm.edu hg19 X 76711987 76711987 + Missense_Mutation SNP T T C novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . FGF16 NM_003868 exon2 c.T325C p.S109P TCCATGTCCAGAG . 100.0 41.0 114.0 0.0 . 16 . . Atlas-SNP CYLC1 1538 hgsc.bcm.edu hg19 X 83126541 83126541 + Missense_Mutation SNP A A T novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . CYLC1 NM_021118 exon3 c.A140T p.D47V CAAATGATAAATC . 388.0 190.0 372.0 1.0 . 272 . . Atlas-SNP RAB39B 116442 hgsc.bcm.edu hg19 X 154493379 154493379 + Silent SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . RAB39B NM_171998 exon1 c.C195T p.T65T ACCCGCGGTATCC . 64.0 30.0 61.0 0.0 . 37 . . Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 15699 15699 + Missense_Mutation SNP G G A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . . ENST00000361789 exon1 c.G953A p.R318H TATTTCGCCCACT . 24.0 11.0 17.0 0.0 . . . . Atlas-SNP PLEKHA5 54477 hgsc.bcm.edu hg19 12 19427544 19427545 + Frame_Shift_Ins INS - - A novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 .,2 PLEKHA5 NM_001256470 exon11 c.940_941insA p.Q314fs . . 166.0 33.0 140.0 0.0 . 198 . . Atlas-INDEL HIST1H1E 3008 hgsc.bcm.edu hg19 6 26156767 26156769 + In_Frame_Del DEL CCT CCT - novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 CCT CCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . HIST1H1E NM_005321 exon1 c.148_150del p.50_50del . . 85.0 25.0 68.0 0.0 . 69 . . Atlas-INDEL NEB 4703 hgsc.bcm.edu hg19 2 152426620 152426620 + Frame_Shift_Del DEL T T - novel TCGA-DD-AAVR-01A-11D-A40R-10 TCGA-DD-AAVR-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq de2cbef6-7b85-4ffc-b131-32615e787573 c5cdd91e-522e-444f-9a7e-81c5d13d1a33 . NEB NM_001271208 exon109 c.17406delG p.K5802fs . . 57.0 13.0 57.0 0.0 . 1697 . . Atlas-INDEL