Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CLCN6	1185	hgsc.bcm.edu	hg19	1	11886262	11886262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	CLCN6	NM_001286	exon9	c.G698T	p.R233L	ATTTCCGAAGCGA	.	62.0	8.0	74.0	0.0	.	77	.	.	Atlas-SNP
ARHGAP29	9411	hgsc.bcm.edu	hg19	1	94655494	94655494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	ARHGAP29	NM_004815	exon13	c.A1427C	p.E476A	ACTTTTTCTTCTT	.	59.0	5.0	65.0	0.0	.	132	.	.	Atlas-SNP
DENND1B	163486	hgsc.bcm.edu	hg19	1	197704922	197704922	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	DENND1B	NM_001195216	exon3	c.C87T	p.D29D	TGGACTGTCCTCT	.	38.0	5.0	28.0	0.0	.	108	.	.	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	hg19	1	229623290	229623290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	NUP133	NM_018230	exon10	c.A1265G	p.E422G	GCACTTTCGTTAT	.	112.0	6.0	52.0	0.0	.	111	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245772752	245772752	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	KIF26B	NM_018012	exon8	c.G1836A	p.S612S	GCTGTCGGAGGTG	.	314.0	55.0	229.0	0.0	.	343	.	.	Atlas-SNP
OR2T12	127064	hgsc.bcm.edu	hg19	1	248458151	248458151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	OR2T12	NM_001004692	exon1	c.G730T	p.A244S	CCACAGCCACATG	.	449.0	219.0	269.0	0.0	.	113	.	.	Atlas-SNP
SH3BP5L	80851	hgsc.bcm.edu	hg19	1	249106244	249106244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	SH3BP5L	NM_030645	exon7	c.A1037G	p.Q346R	CACTTCTGCAGGT	.	140.0	27.0	99.0	0.0	.	47	.	.	Atlas-SNP
ATAD2B	54454	hgsc.bcm.edu	hg19	2	24033262	24033262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	ATAD2B	NM_001242338	exon18	c.G2378T	p.R793I	GAGAATCTTTCTA	.	119.0	17.0	106.0	0.0	.	110	.	.	Atlas-SNP
SDPR	8436	hgsc.bcm.edu	hg19	2	192700699	192700699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	SDPR	NM_004657	exon2	c.G1228A	p.D410N	CCCCATCGGAGCG	.	40.0	20.0	21.0	0.0	.	67	.	.	Atlas-SNP
NYAP2	57624	hgsc.bcm.edu	hg19	2	226447236	226447236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	.	NM_020864	exon4	c.A1103G	p.N368S	TGGAAAACGTGTC	.	269.0	55.0	184.0	0.0	.	.	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	118.0	18.0	113.0	0.0	.	4904	.	.	Atlas-SNP
KLHL18	23276	hgsc.bcm.edu	hg19	3	47371504	47371504	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	KLHL18	NM_025010	exon4	c.G465C	p.L155L	TGTGCTGTACGAC	.	53.0	16.0	67.0	0.0	.	46	.	.	Atlas-SNP
PRR23B	389151	hgsc.bcm.edu	hg19	3	138739004	138739004	+	Missense_Mutation	SNP	C	C	A	rs376706999	alternate_allele	TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	PRR23B,NS,carcinoma,0,1	PRR23B	NM_001013650	exon1	c.G500T	p.R167L	TCCATCCGGAGCT	.	138.0	15.0	139.0	0.0	.	56	.	.	Atlas-SNP
TFRC	7037	hgsc.bcm.edu	hg19	3	195787062	195787062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	TFRC	NM_001128148	exon14	c.A1525G	p.T509A	GCATTGTTTTCTC	.	88.0	7.0	109.0	0.0	.	54	.	.	Atlas-SNP
POLR2B	5431	hgsc.bcm.edu	hg19	4	57871518	57871518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	POLR2B	NM_000938	exon8	c.T1007C	p.I336T	AAAGAATTAAATA	.	351.0	27.0	300.0	0.0	.	108	.	.	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	hg19	4	77662788	77662788	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	SHROOM3	NM_020859	exon5	c.G3462T	p.T1154T	GGCCACGCTCCTG	.	35.0	5.0	28.0	0.0	.	134	.	.	Atlas-SNP
IL15	3600	hgsc.bcm.edu	hg19	4	142653941	142653941	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	IL15	NM_000585	exon8	c.T429C	p.N143N	AAAAAATATTAAA	.	255.0	32.0	258.0	0.0	.	17	.	.	Atlas-SNP
GUCY1A3	2982	hgsc.bcm.edu	hg19	4	156618214	156618214	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	GUCY1A3	NM_001130687	exon3	c.T195A	p.S65R	AACCAGTCGGAGC	.	112.0	21.0	105.0	0.0	.	133	.	.	Atlas-SNP
RGMB	285704	hgsc.bcm.edu	hg19	5	98129071	98129071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	RGMB	NM_001012761	exon5	c.C1051A	p.Q351K	GACCTGCAGCTGT	.	55.0	5.0	58.0	0.0	.	29	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140563835	140563835	+	Silent	SNP	C	C	T	rs370851835		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	PCDHB16,bladder,carcinoma,+2,1	PCDHB16	NM_020957	exon1	c.C1701T	p.N567N	GCAGAACGGCTCC	.	26.0	3.0	33.0	1.0	.	159	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140563836	140563836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	PCDHB16,NS,carcinoma,0,1	PCDHB16	NM_020957	exon1	c.G1702A	p.G568S	CAGAACGGCTCCG	.	26.0	3.0	32.0	1.0	.	159	.	.	Atlas-SNP
SPINK14	408187	hgsc.bcm.edu	hg19	5	147553855	147553855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	SPINK14	NM_001001325	exon3	c.G170T	p.C57F	ACCCCTGCCCTGG	.	159.0	26.0	154.0	0.0	.	9	.	.	Atlas-SNP
ZKSCAN3	80317	hgsc.bcm.edu	hg19	6	28327497	28327497	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	ZKSCAN3	NM_024493	exon2	c.C134G	p.S45C	AGGGCTCCCGCGA	.	93.0	11.0	97.0	0.0	.	50	.	.	Atlas-SNP
CAPN11	11131	hgsc.bcm.edu	hg19	6	44137079	44137079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	CAPN11	NM_007058	exon3	c.G150T	p.K50N	GGCCAAGGGCGTG	.	206.0	56.0	195.0	0.0	.	66	.	.	Atlas-SNP
PSPH	5723	hgsc.bcm.edu	hg19	7	56084931	56084931	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	PSPH	NM_004577	exon6	c.T417C	p.F139F	ACCGTTAAAGTAG	.	225.0	54.0	212.0	0.0	.	23	.	.	Atlas-SNP
GNAI1	2770	hgsc.bcm.edu	hg19	7	79828588	79828588	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	GNAI1	NM_002069	exon4	c.C351T	p.G117G	AGAAGGCTTTATG	.	104.0	34.0	73.0	0.0	.	44	.	.	Atlas-SNP
DLX6	1750	hgsc.bcm.edu	hg19	7	96635385	96635385	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	DLX6,right_lower_lobe,carcinoma,0,1	DLX6	NM_005222	exon1	c.G96A	p.Q32Q	GCAGCAGCAACAG	.	41.0	4.0	31.0	1.0	.	37	.	.	Atlas-SNP
LHFPL3	375612	hgsc.bcm.edu	hg19	7	103969251	103969251	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	LHFPL3,NS,carcinoma,0,1	LHFPL3	NM_199000	exon1	c.C24T	p.A8A	CGCTGCCGCCGCC	.	37.0	2.0	25.0	0.0	.	24	.	.	Atlas-SNP
XPO7	23039	hgsc.bcm.edu	hg19	8	21846524	21846524	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	XPO7	NM_015024	exon16	c.T1798G	p.L600V	ACCAACTTGAAGT	.	61.0	18.0	76.0	0.0	.	79	.	.	Atlas-SNP
SLCO5A1	81796	hgsc.bcm.edu	hg19	8	70585186	70585186	+	Missense_Mutation	SNP	G	G	A	rs369446842	alternate_allele	TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	SLCO5A1	NM_030958	exon10	c.C2465T	p.P822L	GGCCCCGGGTAGG	.	105.0	10.0	63.0	0.0	.	142	.	.	Atlas-SNP
ESRP1	54845	hgsc.bcm.edu	hg19	8	95686717	95686717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	ESRP1	NM_001122827	exon12	c.C1634T	p.P545L	CCCCACCGCCATG	.	109.0	18.0	76.0	0.0	.	148	.	.	Atlas-SNP
CYP11B1	1584	hgsc.bcm.edu	hg19	8	143957167	143957167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	CYP11B1	NM_000497	exon6	c.A1082G	p.E361G	GGCAGCTCGGTGG	.	159.0	7.0	138.0	0.0	.	128	.	.	Atlas-SNP
STXBP1	6812	hgsc.bcm.edu	hg19	9	130423380	130423380	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	STXBP1	NM_001032221	exon6	c.326-1G>T	.	CTTGCAGCTTGTC	.	84.0	10.0	57.0	0.0	.	99	.	.	Atlas-SNP
C1QL3	389941	hgsc.bcm.edu	hg19	10	16556558	16556558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	C1QL3	NM_001010908	exon2	c.C737T	p.T246M	GAAAACGTGCTGT	.	87.0	6.0	98.0	0.0	.	27	.	.	Atlas-SNP
GDF10	2662	hgsc.bcm.edu	hg19	10	48438408	48438408	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	GDF10	NM_004962	exon1	c.C303T	p.S101S	CCTGAAGCTGCGG	.	47.0	10.0	56.0	0.0	.	79	.	.	Atlas-SNP
CCDC6	8030	hgsc.bcm.edu	hg19	10	61666139	61666139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	CCDC6	NM_005436	exon1	c.G44T	p.G15V	CTGTTGCCCCCCG	.	37.0	17.0	25.0	0.0	.	44	.	.	Atlas-SNP
GOLGA7B	401647	hgsc.bcm.edu	hg19	10	99623838	99623838	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	GOLGA7B	NM_001010917	exon3	c.A290T	p.K97M	ATGAGAAGGTGGC	.	96.0	26.0	77.0	0.0	.	11	.	.	Atlas-SNP
COL17A1	1308	hgsc.bcm.edu	hg19	10	105796292	105796292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	COL17A1	NM_000494	exon48	c.G3376T	p.D1126Y	CATAGTCCAAAGA	.	56.0	14.0	67.0	0.0	.	149	.	.	Atlas-SNP
VWA5A	4013	hgsc.bcm.edu	hg19	11	123989361	123989361	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	VWA5A	NM_014622	exon5	c.C591T	p.S197S	CCAATCCAACTGC	.	76.0	25.0	77.0	0.0	.	102	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49431178	49431178	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	MLL2_ENST00000301067,NS,lymphoid_neoplasm,0,4	MLL2	NM_003482	exon34	c.C9961T	p.R3321X	GCTGTCGGGCACC	.	120.0	25.0	113.0	0.0	.	1173	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103385419	103385419	+	Silent	SNP	C	C	T	rs375803026		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	.	NM_001146197	exon4	c.G17628A	p.A5876A	GAGGTGCGCTGTT	.	67.0	17.0	86.0	0.0	.	.	.	.	Atlas-SNP
APEX1	328	hgsc.bcm.edu	hg19	14	20925369	20925369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	APEX1	NM_080648	exon5	c.T659C	p.L220P	TTGACCTTCGCAA	.	120.0	31.0	110.0	0.0	.	23	.	.	Atlas-SNP
SERPINA11	256394	hgsc.bcm.edu	hg19	14	94912770	94912770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	SERPINA11	NM_001080451	exon3	c.C815T	p.A272V	GCCAAGGCATTTC	.	116.0	25.0	97.0	0.0	.	53	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28412958	28412958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	HERC2	NM_004667	exon68	c.G10429T	p.D3477Y	CTGCGTCCTCAGA	.	86.0	18.0	67.0	0.0	.	501	.	.	Atlas-SNP
TUBGCP4	27229	hgsc.bcm.edu	hg19	15	43668706	43668706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	TUBGCP4	NM_014444	exon3	c.C213A	p.H71Q	GGATCACCATCCA	.	85.0	23.0	94.0	0.0	.	48	.	.	Atlas-SNP
CRAMP1L	57585	hgsc.bcm.edu	hg19	16	1715078	1715078	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	CRAMP1L	NM_020825	exon13	c.A2691G	p.P897P	TAGACCATCGGAA	.	72.0	15.0	77.0	0.0	.	60	.	.	Atlas-SNP
GRB7	2886	hgsc.bcm.edu	hg19	17	37901708	37901708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	GRB7	NM_001242442	exon11	c.G1195A	p.D399N	GCCATGGACTTCT	.	47.0	8.0	53.0	0.0	.	48	.	.	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	hg19	17	76075532	76075532	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	TNRC6C	NM_018996	exon11	c.C3267T	p.T1089T	CAGGACCATGCAG	.	57.0	14.0	56.0	0.0	.	173	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3129395	3129395	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	MYOM1	NM_003803	exon18	c.A2629C	p.S877R	GTTTGCTGCCAAG	.	126.0	12.0	101.0	0.0	.	192	.	.	Atlas-SNP
OSBPL1A	114876	hgsc.bcm.edu	hg19	18	21743143	21743143	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	OSBPL1A	NM_080597	exon28	c.A2853G	p.X951X	TGCATTTTAATAA	.	104.0	14.0	82.0	0.0	.	94	.	.	Atlas-SNP
MIDN	90007	hgsc.bcm.edu	hg19	19	1257098	1257098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	MIDN	NM_177401	exon8	c.G1234A	p.A412T	CGGGACGCGCGGG	.	78.0	17.0	71.0	0.0	.	34	.	.	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	hg19	19	11558367	11558367	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	PRKCSH	NM_001001329	exon11	c.G963A	p.E321E	GGAGGAGGAGGAA	.	91.0	4.0	64.0	0.0	.	55	.	.	Atlas-SNP
CALR	811	hgsc.bcm.edu	hg19	19	13054677	13054677	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	CALR	NM_004343	exon9	c.G1204T	p.E402X	GACAAGGAGGAAG	.	372.0	82.0	287.0	0.0	.	31	.	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13616815	13616815	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	CACNA1A	NM_001127221	exon1	c.A224T	p.N75I	GACCGGTTAACCG	.	1101.0	278.0	1039.0	0.0	.	715	.	.	Atlas-SNP
TM6SF2	53345	hgsc.bcm.edu	hg19	19	19379472	19379472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	TM6SF2	NM_001001524	exon6	c.G576T	p.Q192H	CCGGGGCTGGCTG	.	118.0	38.0	93.0	0.0	.	39	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38383766	38383766	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	WDR87	NM_031951	exon4	c.A2460G	p.Q820Q	GAATTCTTGAGAC	.	75.0	19.0	83.0	0.0	.	191	.	.	Atlas-SNP
SLC52A3	113278	hgsc.bcm.edu	hg19	20	746297	746297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	.	NM_033409	exon2	c.C122T	p.P41L	TAGGAGGGCAGGT	.	107.0	32.0	100.0	0.0	.	.	.	.	Atlas-SNP
SLC52A3	113278	hgsc.bcm.edu	hg19	20	746298	746298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	.	NM_033409	exon2	c.C121A	p.P41T	AGGAGGGCAGGTA	.	109.0	32.0	99.0	0.0	.	.	.	.	Atlas-SNP
FAM65C	140876	hgsc.bcm.edu	hg19	20	49247308	49247308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	FAM65C	NM_080829	exon2	c.C77A	p.A26E	AAGCCTGCGAAGG	.	176.0	52.0	142.0	0.0	.	87	.	.	Atlas-SNP
RWDD2B	10069	hgsc.bcm.edu	hg19	21	30380212	30380212	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	RWDD2B	NM_016940	exon4	c.A595C	p.N199H	ATTTGTTATAGAT	.	75.0	24.0	60.0	0.0	.	24	.	.	Atlas-SNP
TRAPPC10	7109	hgsc.bcm.edu	hg19	21	45495012	45495012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	TRAPPC10	NM_003274	exon9	c.G1278T	p.L426F	AGGTTTGGGAGCT	.	86.0	4.0	63.0	0.0	.	109	.	.	Atlas-SNP
ZNF280A	129025	hgsc.bcm.edu	hg19	22	22868555	22868555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	ZNF280A	NM_080740	exon2	c.T1400C	p.I467T	TGCTCTATTTCCT	.	100.0	31.0	91.0	0.0	.	67	.	.	Atlas-SNP
TLR8	51311	hgsc.bcm.edu	hg19	X	12939521	12939521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	TLR8	NM_138636	exon2	c.G2362A	p.D788N	TGGATGGATGAAC	.	71.0	15.0	71.0	0.0	.	134	.	.	Atlas-SNP
SUPT20HL1	100130302	hgsc.bcm.edu	hg19	X	24383454	24383454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	.	NM_001136234	exon1	c.G2577T	p.Q859H	TGTTCAGATAGTG	.	55.0	19.0	74.0	0.0	.	.	.	.	Atlas-SNP
FYB	2533	hgsc.bcm.edu	hg19	5	39202090	39202091	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	FYB_ENST00000540520,NS,carcinoma,0,12	FYB	NM_001243093	exon2	c.1003_1004insG	p.P335fs	.	.	108.0	16.0	104.0	0.0	.	354	.	.	Atlas-INDEL
KRT2	3849	hgsc.bcm.edu	hg19	12	53045638	53045639	+	In_Frame_Ins	INS	-	-	AAAGCCGCTGCCGCCTCC	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	KRT2	NM_000423	exon1	c.289_290insGGAGGCGGCAGCGGCTTT	p.G97delinsGGGSGFG	.	.	162.0	59.0	132.0	0.0	.	94	.	.	Atlas-INDEL
PRKRIR	5612	hgsc.bcm.edu	hg19	11	76062358	76062362	+	Frame_Shift_Del	DEL	CATGA	CATGA	-	novel		TCGA-DD-AAVQ-01A-11D-A40R-10	TCGA-DD-AAVQ-10A-01D-A40U-10	CATGA	CATGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	909a06f3-3314-45ad-a516-b06af0c953a3	8bb6a3ac-5434-4a1d-952d-273baa389e04	.	PRKRIR	NM_004705	exon5	c.1833_1837del	p.611_613del	.	.	123.0	28.0	125.0	0.0	.	65	.	.	Atlas-INDEL