Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TMEM88B 643965 hgsc.bcm.edu hg19 1 1361567 1361567 + Silent SNP A A T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . . NM_001146685 exon1 c.A60T p.T20T CGACACAGCGCCC . 80.0 29.0 136.0 0.0 . . . . Atlas-SNP CSF3R 1441 hgsc.bcm.edu hg19 1 36937988 36937988 + Missense_Mutation SNP C C T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . CSF3R NM_156039 exon8 c.G848A p.G283D AGGGGGCCCACCT . 46.0 9.0 53.0 0.0 . 157 . . Atlas-SNP PTCH2 8643 hgsc.bcm.edu hg19 1 45288095 45288095 + Missense_Mutation SNP T T C novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . PTCH2 NM_003738 exon22 c.A3604G p.T1202A ACCCAGTGGCTGG . 32.0 10.0 49.0 0.0 . 96 . . Atlas-SNP SIKE1 80143 hgsc.bcm.edu hg19 1 115318966 115318966 + Splice_Site SNP C C G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 SIKE1,bladder,carcinoma,0,1 SIKE1 NM_001102396 exon5 c.534+1G>C . ATCTTACCTCTAA . 69.0 8.0 76.0 0.0 . 12 . . Atlas-SNP HCN3 57657 hgsc.bcm.edu hg19 1 155247573 155247573 + Silent SNP G G T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . HCN3 NM_020897 exon1 c.G192T p.V64V TCGGGTGTTCGGC . 317.0 205.0 258.0 1.0 . 74 . . Atlas-SNP KIRREL 55243 hgsc.bcm.edu hg19 1 158054346 158054346 + Missense_Mutation SNP C C G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . KIRREL NM_018240 exon4 c.C487G p.Q163E ACGCAGCAGGAGG . 183.0 9.0 164.0 0.0 . 346 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186056407 186056407 + Missense_Mutation SNP T T G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . HMCN1 NM_031935 exon59 c.T9105G p.C3035W CACTTGTATAGCT . 242.0 54.0 191.0 0.0 . 797 . . Atlas-SNP FAM5C 339479 hgsc.bcm.edu hg19 1 190068054 190068054 + Silent SNP G G T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 FAM5C,NS,carcinoma,-2,1 FAM5C NM_199051 exon8 c.C1395A p.T465T GTAGCCGGTGTTG . 140.0 30.0 102.0 0.0 . 343 . . Atlas-SNP SYT14 255928 hgsc.bcm.edu hg19 1 210332796 210332796 + Missense_Mutation SNP T T A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . SYT14 NM_001146261 exon9 c.T1520A p.I507K ACTTGATAGGTGG . 221.0 56.0 183.0 0.0 . 89 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228496077 228496077 + Silent SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . OBSCN NM_001271223 exon58 c.C15603A p.T5201T GCTCACCGTCAGA . 73.0 18.0 60.0 0.0 . 2142 . . Atlas-SNP DPYSL5 56896 hgsc.bcm.edu hg19 2 27121441 27121441 + Missense_Mutation SNP A A G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . DPYSL5 NM_001253724 exon2 c.A74G p.E25G CCCACGAGGCTGA . 166.0 68.0 181.0 0.0 . 69 . . Atlas-SNP SLC30A3 7781 hgsc.bcm.edu hg19 2 27481124 27481124 + Missense_Mutation SNP A A T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . SLC30A3 NM_003459 exon3 c.T329A p.L110Q TCCGCCAGCAAGT . 79.0 27.0 117.0 0.0 . 39 . . Atlas-SNP FSIP2 401024 hgsc.bcm.edu hg19 2 186671383 186671383 + Missense_Mutation SNP G G A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . FSIP2 NM_173651 exon17 c.G17617A p.A5873T TTTCCCGCTAAGT . 243.0 102.0 254.0 0.0 . 251 . . Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220344828 220344828 + Missense_Mutation SNP A A C novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . SPEG NM_005876 exon25 c.A5308C p.N1770H ATTGTCAATCAGA . 29.0 12.0 40.0 0.0 . 272 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266107 41266107 + Missense_Mutation SNP T T G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 CTNNB1,NS,carcinoma,0,1 CTNNB1 NM_001098209 exon3 c.T104G p.I35S CTGGAATCCATTC . 97.0 34.0 107.0 0.0 . 4904 . . Atlas-SNP SPATA16 83893 hgsc.bcm.edu hg19 3 172834939 172834939 + Missense_Mutation SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . SPATA16 NM_031955 exon2 c.G583T p.A195S CTGCTGCCAAGGC . 70.0 22.0 91.0 0.0 . 111 . . Atlas-SNP SPATA16 83893 hgsc.bcm.edu hg19 3 172834940 172834940 + Missense_Mutation SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . SPATA16 NM_031955 exon2 c.G582T p.L194F TGCTGCCAAGGCG . 70.0 21.0 92.0 0.0 . 111 . . Atlas-SNP SEL1L3 23231 hgsc.bcm.edu hg19 4 25836840 25836840 + Missense_Mutation SNP C C T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . SEL1L3 NM_015187 exon3 c.G839A p.R280H CTCTGGCGTCGAG . 61.0 17.0 65.0 0.0 . 62 . . Atlas-SNP KIT 3815 hgsc.bcm.edu hg19 4 55564702 55564702 + Missense_Mutation SNP C C T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 KIT,NS,haematopoietic_neoplasm,0,1 KIT NM_000222 exon3 c.C590T p.S197L TGCTGTCGGAAAA . 41.0 16.0 59.0 0.0 . 7396 . . Atlas-SNP WDFY3 23001 hgsc.bcm.edu hg19 4 85719181 85719181 + Missense_Mutation SNP G G A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . WDFY3 NM_014991 exon18 c.C2903T p.P968L GAACTTGGTTTGT . 60.0 18.0 88.0 0.0 . 314 . . Atlas-SNP AQPEP 0 hgsc.bcm.edu hg19 5 115318983 115318983 + Splice_Site SNP G G T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . . NM_173800 exon2 c.696-1G>T . ATTTCAGGGCCCT . 353.0 130.0 442.0 0.0 . . . . Atlas-SNP SLIT3 6586 hgsc.bcm.edu hg19 5 168189636 168189636 + Silent SNP G G A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . SLIT3 NM_001271946 exon15 c.C1518T p.P506P CTTCTCGGGGCAC . 56.0 18.0 80.0 0.0 . 224 . . Atlas-SNP MDFI 4188 hgsc.bcm.edu hg19 6 41613971 41613971 + Missense_Mutation SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 MDFI,NS,malignant_melanoma,0,1 MDFI NM_005586 exon3 c.C184A p.P62T CCCATGCCCCAAG . 140.0 62.0 225.0 0.0 . 19 . . Atlas-SNP MDFI 4188 hgsc.bcm.edu hg19 6 41613972 41613972 + Missense_Mutation SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . MDFI NM_005586 exon3 c.C185A p.P62H CCATGCCCCAAGG . 142.0 61.0 223.0 0.0 . 19 . . Atlas-SNP CRIP3 401262 hgsc.bcm.edu hg19 6 43274226 43274226 + Missense_Mutation SNP C C T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . CRIP3 NM_206922 exon5 c.G358A p.E120K AGGTCTCCCCAGT . 51.0 21.0 81.0 0.0 . 30 . . Atlas-SNP GPR110 266977 hgsc.bcm.edu hg19 6 46976900 46976900 + Silent SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . GPR110 NM_153840 exon11 c.G2271T p.V757V GAAGTTCACAGCC . 163.0 58.0 191.0 0.0 . 102 . . Atlas-SNP TNFRSF21 27242 hgsc.bcm.edu hg19 6 47251829 47251829 + Missense_Mutation SNP A A T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . TNFRSF21 NM_014452 exon3 c.T1088A p.V363E ATCACCACAAGCA . 79.0 34.0 89.0 0.0 . 61 . . Atlas-SNP HDAC2 3066 hgsc.bcm.edu hg19 6 114277278 114277278 + Missense_Mutation SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . HDAC2 NM_001527 exon5 c.G396T p.M132I AACAGCCATATCA . 56.0 37.0 91.0 0.0 . 102 . . Atlas-SNP MTRF1L 54516 hgsc.bcm.edu hg19 6 153316354 153316354 + Missense_Mutation SNP G G A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . MTRF1L NM_019041 exon3 c.C440T p.S147L ATCTCTGATGTAA . 194.0 71.0 211.0 0.0 . 21 . . Atlas-SNP THBS2 7058 hgsc.bcm.edu hg19 6 169620434 169620434 + Splice_Site SNP T T G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . THBS2 NM_003247 exon23 c.3372-2A>C . AGACTCTAAAAAT . 83.0 32.0 113.0 0.0 . 230 . . Atlas-SNP THBS2 7058 hgsc.bcm.edu hg19 6 169646339 169646339 + Missense_Mutation SNP G G T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . THBS2 NM_003247 exon5 c.C647A p.S216Y TCCACAGAGTTTT . 66.0 25.0 88.0 0.0 . 230 . . Atlas-SNP TNRC18 84629 hgsc.bcm.edu hg19 7 5352833 5352833 + Silent SNP G G A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . TNRC18 NM_001080495 exon27 c.C7689T p.S2563S ACTACTGCTGCTG . 78.0 5.0 47.0 0.0 . 311 . . Atlas-SNP CUX1 1523 hgsc.bcm.edu hg19 7 101844891 101844891 + Missense_Mutation SNP G G C novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . CUX1 NM_001202543 exon18 c.G2347C p.E783Q GCTCCTGAGGCCG . 55.0 16.0 59.0 0.0 . 253 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 132192829 132192829 + Silent SNP A A C rs142932361 alternate_allele TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . PLXNA4 NM_001105543 exon2 c.T624G p.S208S CGCCTCAGAGTTC . 52.0 22.0 57.0 0.0 . 873 . A|1.000;G|0.000 Atlas-SNP GPR124 25960 hgsc.bcm.edu hg19 8 37699548 37699548 + Missense_Mutation SNP T T A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . GPR124 NM_032777 exon19 c.T3692A p.L1231Q GCTACCTGGGCAG . 26.0 11.0 9.0 0.0 . 85 . . Atlas-SNP PAG1 55824 hgsc.bcm.edu hg19 8 81888943 81888943 + Missense_Mutation SNP G G A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . PAG1 NM_018440 exon9 c.C1135T p.P379S CGCTGGGCCTCCC . 92.0 30.0 123.0 0.0 . 39 . . Atlas-SNP CDH17 1015 hgsc.bcm.edu hg19 8 95188826 95188826 + Silent SNP G G T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 CDH17,NS,malignant_melanoma,+1,1 CDH17 NM_004063 exon5 c.C367A p.R123R TGGGTCGATTGTC . 149.0 54.0 176.0 0.0 . 119 . . Atlas-SNP RECQL4 9401 hgsc.bcm.edu hg19 8 145738712 145738712 + Silent SNP C C T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . RECQL4 NM_004260 exon15 c.G2352A p.R784R CACAGCCCGCACA . 52.0 18.0 61.0 0.0 . 75 . . Atlas-SNP MLANA 2315 hgsc.bcm.edu hg19 9 5906982 5906982 + Missense_Mutation SNP A A C novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . MLANA NM_005511 exon4 c.A272C p.K91T AAGAGAAAAACTG . 80.0 24.0 120.0 0.0 . 16 . . Atlas-SNP OR1J1 347168 hgsc.bcm.edu hg19 9 125239744 125239744 + Silent SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . OR1J1 NM_001004451 exon1 c.G462T p.A154A AGCACACGCACAA . 82.0 31.0 96.0 0.0 . 46 . . Atlas-SNP GATA3 2625 hgsc.bcm.edu hg19 10 8106026 8106026 + Silent SNP C C T rs138698611 TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . GATA3 NM_001002295 exon4 c.C849T p.Y283Y ACACTACCTGTGC . 107.0 35.0 159.0 0.0 . 182 . C|1.000;T|0.000 Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 17147494 17147494 + Missense_Mutation SNP T T G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . CUBN NM_001081 exon11 c.A1192C p.I398L GGCAAATATTACT . 60.0 29.0 92.0 0.0 . 515 . . Atlas-SNP ZMIZ1 57178 hgsc.bcm.edu hg19 10 81064989 81064989 + Splice_Site SNP G G C novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . ZMIZ1 NM_020338 exon20 c.2354+1G>C . GTGCAAGTGAGTG . 40.0 6.0 80.0 0.0 . 101 . . Atlas-SNP MAT1A 4143 hgsc.bcm.edu hg19 10 82034403 82034403 + Missense_Mutation SNP A A T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . MAT1A NM_000429 exon8 c.T958A p.Y320N TGGCATAGGAAAC . 45.0 17.0 71.0 0.0 . 52 . . Atlas-SNP ARFIP2 23647 hgsc.bcm.edu hg19 11 6500162 6500162 + Missense_Mutation SNP A A G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . ARFIP2 NM_001242854 exon5 c.T442C p.F148L GACCAAATCGTTC . 46.0 19.0 69.0 0.0 . 23 . . Atlas-SNP ZDHHC13 54503 hgsc.bcm.edu hg19 11 19173800 19173800 + Missense_Mutation SNP C C T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . ZDHHC13 NM_019028 exon7 c.C680T p.A227V TTGCAGCAGGAAA . 104.0 38.0 154.0 0.0 . 40 . . Atlas-SNP OR8K3 219473 hgsc.bcm.edu hg19 11 56086232 56086232 + Silent SNP C C T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . OR8K3 NM_001005202 exon1 c.C450T p.L150L TTACCTCTATTGC . 86.0 28.0 115.0 0.0 . 92 . . Atlas-SNP FAM111A 63901 hgsc.bcm.edu hg19 11 58919496 58919496 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . FAM111A NM_001142520 exon5 c.G355T p.E119X GAGATAGAAACTC . 123.0 43.0 150.0 0.0 . 57 . . Atlas-SNP PLCB3 5331 hgsc.bcm.edu hg19 11 64023939 64023939 + Missense_Mutation SNP T T A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . PLCB3 NM_000932 exon9 c.T790A p.Y264N GTGCTGTACCCGC . 123.0 44.0 120.0 0.0 . 103 . . Atlas-SNP PRSS23 11098 hgsc.bcm.edu hg19 11 86518742 86518742 + Silent SNP G G C novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . PRSS23 NM_007173 exon2 c.G57C p.G19G TGTTGGGCAAGTG . 68.0 28.0 99.0 0.0 . 49 . . Atlas-SNP CNTN1 1272 hgsc.bcm.edu hg19 12 41387040 41387040 + Missense_Mutation SNP A A G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . CNTN1 NM_001843 exon17 c.A2082G p.I694M CAGTATACCATCT . 112.0 38.0 136.0 0.0 . 207 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35624441 35624441 + Missense_Mutation SNP A A G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . NBEA NM_015678 exon6 c.A881G p.H294R CTGCTCATTTTGT . 78.0 33.0 131.0 0.0 . 340 . . Atlas-SNP OR11H12 440153 hgsc.bcm.edu hg19 14 19378063 19378063 + Missense_Mutation SNP C C T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 OR11H12,NS,carcinoma,0,1 OR11H12 NM_001013354 exon1 c.C470T p.A157V TCTGTGCCAAACT . 395.0 35.0 530.0 0.0 . 58 . . Atlas-SNP MIPOL1 145282 hgsc.bcm.edu hg19 14 37754588 37754588 + Missense_Mutation SNP T T G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . MIPOL1 NM_001195296 exon9 c.T559G p.L187V CTGCAATTAGCCA . 81.0 32.0 86.0 0.0 . 50 . . Atlas-SNP LRFN5 145581 hgsc.bcm.edu hg19 14 42360572 42360572 + Missense_Mutation SNP T T C novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . LRFN5 NM_152447 exon4 c.T1505C p.V502A CAAGAGTCGTGGG . 54.0 20.0 71.0 0.0 . 269 . . Atlas-SNP VPS39 23339 hgsc.bcm.edu hg19 15 42458377 42458377 + Missense_Mutation SNP A A T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . VPS39 NM_015289 exon16 c.T1660A p.F554I CTGGGAAGTCTCT . 82.0 27.0 127.0 0.0 . 53 . . Atlas-SNP HCN4 10021 hgsc.bcm.edu hg19 15 73615463 73615463 + Missense_Mutation SNP G G T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 HCN4,NS,carcinoma,0,1 HCN4 NM_005477 exon8 c.C2971A p.L991M TGCTCAGTGGGCC . 57.0 22.0 104.0 0.0 . 150 . . Atlas-SNP IL16 3603 hgsc.bcm.edu hg19 15 81598392 81598392 + Silent SNP C C G rs145310121 alternate_allele TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . IL16 NM_001172128 exon17 c.C3564G p.P1188P AGAGCCCAGGCAA . 50.0 19.0 31.0 0.0 . 254 . C|1.000;T|0.000 Atlas-SNP IGF1R 3480 hgsc.bcm.edu hg19 15 99465501 99465501 + Missense_Mutation SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . IGF1R NM_000875 exon11 c.C2326A p.P776T GAGTACCCTTTCT . 82.0 26.0 93.0 0.0 . 147 . . Atlas-SNP PDIA2 64714 hgsc.bcm.edu hg19 16 335428 335428 + Missense_Mutation SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . PDIA2 NM_006849 exon6 c.C912A p.F304L CCGCTTCCGGGGG . 45.0 13.0 33.0 0.0 . 51 . . Atlas-SNP ZNF768 79724 hgsc.bcm.edu hg19 16 30536540 30536540 + Missense_Mutation SNP G G T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . ZNF768 NM_024671 exon2 c.C921A p.H307Q GCGCTGGTGTTTG . 61.0 21.0 64.0 0.0 . 28 . . Atlas-SNP LCAT 3931 hgsc.bcm.edu hg19 16 67977971 67977971 + Missense_Mutation SNP T T G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . LCAT NM_000229 exon1 c.A34C p.T12P GCAGCGTCACCCA . 101.0 39.0 143.0 0.0 . 31 . . Atlas-SNP PLEKHM1 9842 hgsc.bcm.edu hg19 17 43531021 43531021 + Missense_Mutation SNP C C A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . PLEKHM1 NM_014798 exon7 c.G2197T p.D733Y GGATGTCCCGGAT . 139.0 52.0 162.0 0.0 . 69 . . Atlas-SNP NOTUM 147111 hgsc.bcm.edu hg19 17 79914895 79914895 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . NOTUM NM_178493 exon7 c.A751T p.K251X CCAGCTTCTCCAG . 39.0 11.0 41.0 0.0 . 50 . . Atlas-SNP HMHA1 23526 hgsc.bcm.edu hg19 19 1084297 1084297 + Missense_Mutation SNP G G A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . HMHA1 NM_001258328 exon22 c.G3064A p.E1022K GCGGGCGAGGCGG . 109.0 10.0 146.0 0.0 . 78 . . Atlas-SNP ZNF560 147741 hgsc.bcm.edu hg19 19 9583900 9583900 + Silent SNP A A G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . ZNF560 NM_152476 exon5 c.T193C p.L65L CTTCCAACCAAGA . 28.0 9.0 51.0 0.0 . 162 . . Atlas-SNP KCTD15 79047 hgsc.bcm.edu hg19 19 34291425 34291425 + Silent SNP G G T rs142074601 bycluster;alternate_allele TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . KCTD15 NM_001129995 exon3 c.G66T p.A22A CACCGCGGTGAGC . 136.0 59.0 153.0 0.0 . 18 . G|1.000;A|0.000 Atlas-SNP UBA2 10054 hgsc.bcm.edu hg19 19 34925843 34925843 + Silent SNP G G A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . UBA2 NM_005499 exon5 c.G429A p.G143G AGCTGGGTATCTT . 338.0 129.0 421.0 0.0 . 53 . . Atlas-SNP ZNF30 90075 hgsc.bcm.edu hg19 19 35435358 35435358 + Silent SNP C C T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . ZNF30 NM_001099438 exon5 c.C1491T p.A497A TCGAGCCTCGTAC . 71.0 23.0 73.0 0.0 . 44 . . Atlas-SNP ZNF114 163071 hgsc.bcm.edu hg19 19 48789079 48789079 + Silent SNP A A G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . ZNF114 NM_153608 exon5 c.A198G p.R66R TAAAAGAACATTT . 88.0 37.0 139.0 0.0 . 46 . . Atlas-SNP PPP6R1 22870 hgsc.bcm.edu hg19 19 55751023 55751023 + Missense_Mutation SNP C C T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . PPP6R1 NM_014931 exon14 c.G1592A p.S531N TCGTCACTGGAGG . 61.0 18.0 62.0 0.0 . 63 . . Atlas-SNP ZNF335 63925 hgsc.bcm.edu hg19 20 44590731 44590731 + Missense_Mutation SNP C C A rs140842666 alternate_allele TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . ZNF335 NM_022095 exon10 c.G1624T p.A542S CAGCGGCGTGCCG . 33.0 13.0 25.0 0.0 . 115 . C|1.000;T|0.000 Atlas-SNP LCA5L 150082 hgsc.bcm.edu hg19 21 40778273 40778273 + Silent SNP G G T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . LCA5L NM_152505 exon10 c.C1548A p.G516G GAGGGGGCCTTTC . 99.0 4.0 90.0 0.0 . 57 . . Atlas-SNP C22orf39 128977 hgsc.bcm.edu hg19 22 19435059 19435059 + Missense_Mutation SNP G G A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . C22orf39 NM_173793 exon2 c.C145T p.P49S CGCAGGGGCGCGG . 33.0 14.0 13.0 0.0 . 11 . . Atlas-SNP XG 7499 hgsc.bcm.edu hg19 X 2712585 2712585 + Missense_Mutation SNP A A G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . XG NM_001141920 exon6 c.A266G p.N89S ACTTCAATGATGT . 71.0 62.0 57.0 0.0 . 22 . . Atlas-SNP STAG2 10735 hgsc.bcm.edu hg19 X 123182871 123182871 + Missense_Mutation SNP A A G novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . STAG2 NM_001042749 exon10 c.A836G p.D279G ATCAAGATGAAAT . 627.0 192.0 337.0 0.0 . 309 . . Atlas-SNP SMARCA1 6594 hgsc.bcm.edu hg19 X 128645791 128645791 + Missense_Mutation SNP T T C novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . SMARCA1 NM_139035 exon6 c.A800G p.K267R GCATCCTTGTCTC . 434.0 406.0 156.0 0.0 . 126 . . Atlas-SNP SAGE1 55511 hgsc.bcm.edu hg19 X 134990278 134990278 + Missense_Mutation SNP A A T novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . SAGE1 NM_018666 exon11 c.A1190T p.E397V GTGAAGAGAAGAA . 193.0 172.0 101.0 0.0 . 160 . . Atlas-SNP PODXL 5420 hgsc.bcm.edu hg19 7 131241049 131241050 + In_Frame_Ins INS - - CGACGC novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . PODXL NM_005397 exon1 c.70_71insGCGTCG p.P24delinsASP . . 65.0 27.0 75.0 0.0 . 53 . . Atlas-INDEL ARVCF 421 hgsc.bcm.edu hg19 22 19960689 19960692 + Frame_Shift_Del DEL GAGC GAGC - novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 GAGC GAGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . ARVCF NM_001670 exon14 c.2389_2392del p.797_798del . . 49.0 23.0 51.0 0.0 . 54 . . Atlas-INDEL HERC4 26091 hgsc.bcm.edu hg19 10 69750905 69750906 + Frame_Shift_Ins INS - - A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 .,1 HERC4 NM_022079 exon12 c.1323_1324insT p.L441fs . . 501.0 158.0 645.0 0.0 . 78 . . Atlas-INDEL WDR63 126820 hgsc.bcm.edu hg19 1 85598554 85598555 + Frame_Shift_Ins INS - - A novel TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 . WDR63 NM_145172 exon23 c.2549_2550insA p.S850fs . . 66.0 26.0 76.0 0.0 . 91 . . Atlas-INDEL ATXN1 6310 hgsc.bcm.edu hg19 6 16327918 16327919 + In_Frame_Ins INS - - TGCTGA rs71806515 alternate_allele TCGA-DD-AAVP-01A-11D-A40R-10 TCGA-DD-AAVP-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4ee32767-8d4e-47ab-bbf6-9f623159f16b c86ff390-e3fe-44f9-8f26-e7c7dd6c5536 ATXN1,rectum,carcinoma,0,1 ATXN1 NM_000332 exon8 c.624_625insTCAGCA p.Q208delinsHQQ . . 25.0 12.0 35.0 0.0 . 117 . . Atlas-INDEL