Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ARHGEF10L 55160 hgsc.bcm.edu hg19 1 17981137 17981137 + Missense_Mutation SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ARHGEF10L NM_018125 exon23 c.G2401T p.A801S CTTGGGGCCCTGG . 33.0 24.0 35.0 0.0 . 219 . . Atlas-SNP HSPG2 3339 hgsc.bcm.edu hg19 1 22158249 22158249 + Missense_Mutation SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . HSPG2 NM_005529 exon82 c.A11248G p.T3750A GTGGTGTGGGATG . 224.0 171.0 301.0 1.0 . 311 . . Atlas-SNP PCSK9 255738 hgsc.bcm.edu hg19 1 55527047 55527047 + Splice_Site SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . PCSK9 NM_174936 exon11 c.1682-1G>T . GCCCCAGGCTGCA . 199.0 99.0 285.0 0.0 . 76 . . Atlas-SNP FPGT-TNNI3K 100526835 hgsc.bcm.edu hg19 1 74833646 74833646 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . . NM_001112808 exon15 c.A1622T p.K541I TGACAAAAGGTAC . 289.0 94.0 358.0 0.0 . . . . Atlas-SNP INTS3 65123 hgsc.bcm.edu hg19 1 153743174 153743174 + Silent SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . INTS3 NM_023015 exon25 c.C2517T p.A839A AGAGGCCCTGTCC . 69.0 26.0 54.0 0.0 . 83 . . Atlas-SNP LRRC71 149499 hgsc.bcm.edu hg19 1 156899104 156899104 + Silent SNP G G C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . LRRC71 NM_144702 exon10 c.G1029C p.T343T CAAAACGGACCGT . 167.0 20.0 125.0 0.0 . 33 . . Atlas-SNP CTSE 1510 hgsc.bcm.edu hg19 1 206319173 206319173 + Missense_Mutation SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . CTSE NM_001910 exon3 c.T298C p.S100P GGCTCCTCCAACC . 109.0 44.0 57.0 0.0 . 72 . . Atlas-SNP DIEXF 27042 hgsc.bcm.edu hg19 1 210010380 210010380 + Missense_Mutation SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . DIEXF NM_014388 exon6 c.G886A p.E296K TACCCGGAAAGGA . 213.0 104.0 130.0 0.0 . 97 . . Atlas-SNP ALLC 55821 hgsc.bcm.edu hg19 2 3729266 3729266 + Missense_Mutation SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ALLC NM_018436 exon6 c.C341T p.A114V CAGGAGCTGCAGC . 83.0 35.0 110.0 0.0 . 61 . . Atlas-SNP TUBA3E 112714 hgsc.bcm.edu hg19 2 130951585 130951585 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . TUBA3E NM_207312 exon4 c.C830A p.S277X TCAGCTGAGATGA . 77.0 4.0 113.0 0.0 . 73 . . Atlas-SNP ZNF804A 91752 hgsc.bcm.edu hg19 2 185802939 185802939 + Missense_Mutation SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 ZNF804A,mucosal,malignant_melanoma,0,1 ZNF804A NM_194250 exon4 c.G2816A p.R939K AAGAAAGAAGTGA . 119.0 49.0 151.0 0.0 . 322 . . Atlas-SNP GPR55 9290 hgsc.bcm.edu hg19 2 231775507 231775507 + Silent SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . GPR55 NM_005683 exon2 c.T171A p.A57A GGTGGCAGCATAA . 171.0 61.0 229.0 0.0 . 46 . . Atlas-SNP NMUR1 10316 hgsc.bcm.edu hg19 2 232393719 232393719 + Missense_Mutation SNP A A C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . NMUR1 NM_006056 exon2 c.T13G p.C5G TGAGGCAGAGAGG . 26.0 11.0 39.0 0.0 . 46 . . Atlas-SNP TRPM8 79054 hgsc.bcm.edu hg19 2 234863846 234863846 + Missense_Mutation SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . TRPM8 NM_024080 exon11 c.G1314T p.Q438H GAACCAGCTGGAC . 107.0 40.0 127.0 0.0 . 146 . . Atlas-SNP SRGAP3 9901 hgsc.bcm.edu hg19 3 9094837 9094837 + Silent SNP G G C rs369059791 alternate_allele TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . SRGAP3 NM_014850 exon9 c.C1197G p.S399S GGCATCGGAGACA . 104.0 9.0 104.0 0.0 . 146 . . Atlas-SNP EOMES 8320 hgsc.bcm.edu hg19 3 27763181 27763181 + Missense_Mutation SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . EOMES NM_005442 exon1 c.C605A p.P202Q CCGGGTGGGCACA . 80.0 35.0 60.0 0.0 . 65 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266124 41266124 + Missense_Mutation SNP A A G rs121913412 bycluster TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 CTNNB1,gallbladder,other,0,1 CTNNB1 NM_001098209 exon3 c.A121G p.T41A GCCACTACCACAG . 153.0 93.0 151.0 0.0 . 4904 . . Atlas-SNP SENP7 57337 hgsc.bcm.edu hg19 3 101059023 101059023 + Missense_Mutation SNP C C A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . SENP7 NM_020654 exon16 c.G2273T p.G758V AATCCCCCCTTAG . 567.0 152.0 437.0 0.0 . 170 . . Atlas-SNP N4BP2 55728 hgsc.bcm.edu hg19 4 40122514 40122514 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . N4BP2 NM_018177 exon9 c.A2783T p.E928V CACATGAGGCCTG . 187.0 71.0 215.0 0.0 . 166 . . Atlas-SNP MRPL1 65008 hgsc.bcm.edu hg19 4 78830432 78830432 + Missense_Mutation SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . MRPL1 NM_020236 exon7 c.G683T p.R228L TTGGCCGTGACAT . 447.0 162.0 550.0 0.0 . 37 . . Atlas-SNP VEGFC 7424 hgsc.bcm.edu hg19 4 177650707 177650707 + Missense_Mutation SNP T T A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . VEGFC NM_005429 exon2 c.A341T p.Y114F GTATTATAATGTG . 50.0 19.0 75.0 0.0 . 94 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13692162 13692162 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . DNAH5 NM_001369 exon79 c.T13806A p.D4602E CCTGAGATCCACA . 124.0 48.0 158.0 0.0 . 868 . . Atlas-SNP RAPGEF6 51735 hgsc.bcm.edu hg19 5 130938979 130938979 + Missense_Mutation SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . RAPGEF6 NM_001164387 exon3 c.A182G p.N61S ACCTGATTGCCAC . 384.0 113.0 458.0 0.0 . 361 . . Atlas-SNP PCDHB1 29930 hgsc.bcm.edu hg19 5 140432978 140432978 + Silent SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . PCDHB1 NM_013340 exon1 c.G1923A p.L641L GAAATTGATCATT . 91.0 37.0 86.0 0.0 . 148 . . Atlas-SNP SLIT3 6586 hgsc.bcm.edu hg19 5 168727521 168727521 + Missense_Mutation SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . SLIT3 NM_001271946 exon1 c.C193A p.R65S ACAGGCGCTCAGC . 90.0 35.0 120.0 0.0 . 224 . . Atlas-SNP HK3 3101 hgsc.bcm.edu hg19 5 176318414 176318414 + Silent SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . HK3 NM_002115 exon3 c.C234T p.Y78Y CCCCACGTATGTA . 32.0 16.0 51.0 0.0 . 210 . . Atlas-SNP DOK3 79930 hgsc.bcm.edu hg19 5 176930063 176930063 + Missense_Mutation SNP T T A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . DOK3 NM_001144875 exon6 c.A976T p.T326S CAAGGGTGTGTGC . 49.0 22.0 62.0 0.0 . 41 . . Atlas-SNP BTN3A1 11119 hgsc.bcm.edu hg19 6 26413486 26413486 + Missense_Mutation SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . BTN3A1 NM_007048 exon10 c.G1108T p.D370Y CCCCAGGATCTGC . 288.0 52.0 204.0 0.0 . 80 . . Atlas-SNP HLA-A 3105 hgsc.bcm.edu hg19 6 29910588 29910588 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . HLA-A NM_001242758 exon2 c.A128T p.E43V GCGGGGAGCCCCG . 195.0 63.0 129.0 0.0 . 89 . . Atlas-SNP CCHCR1 54535 hgsc.bcm.edu hg19 6 31122472 31122472 + Missense_Mutation SNP C C A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 CCHCR1_ENST00000396268,NS,carcinoma,0,3 CCHCR1 NM_001105564 exon4 c.G602T p.R201L GTCTCCCGCAGGA . 97.0 72.0 55.0 0.0 . 68 . . Atlas-SNP LHFPL5 222662 hgsc.bcm.edu hg19 6 35773575 35773575 + Missense_Mutation SNP T T A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . LHFPL5 NM_182548 exon1 c.T128A p.L43H TGGCCCTCTTCAT . 149.0 55.0 128.0 0.0 . 44 . . Atlas-SNP DAAM2 23500 hgsc.bcm.edu hg19 6 39851783 39851783 + Missense_Mutation SNP G G C rs376832339 alternate_allele TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . DAAM2 NM_015345 exon15 c.G1891C p.V631L ATGCAGGTATTTC . 137.0 19.0 58.0 0.0 . 101 . . Atlas-SNP DLK2 65989 hgsc.bcm.edu hg19 6 43419007 43419007 + Missense_Mutation SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . DLK2 NM_023932 exon6 c.C422T p.P141L CGGCATGGGGAGC . 181.0 53.0 99.0 0.0 . 22 . . Atlas-SNP YIPF3 25844 hgsc.bcm.edu hg19 6 43480851 43480851 + Silent SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . YIPF3 NM_015388 exon6 c.C622T p.L208L TGCACAGGTAGGC . 158.0 34.0 83.0 0.0 . 20 . . Atlas-SNP HCRTR2 3062 hgsc.bcm.edu hg19 6 55145187 55145187 + Missense_Mutation SNP C C G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . HCRTR2 NM_001526 exon6 c.C1050G p.H350Q TTCACACTGGCTT . 186.0 44.0 119.0 0.0 . 112 . . Atlas-SNP NPSR1 387129 hgsc.bcm.edu hg19 7 34867102 34867102 + Missense_Mutation SNP C C G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . NPSR1 NM_207172 exon5 c.C568G p.L190V AGGACACTGTCCA . 108.0 61.0 120.0 0.0 . 134 . . Atlas-SNP TNS3 64759 hgsc.bcm.edu hg19 7 47440024 47440024 + Silent SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . TNS3 NM_022748 exon15 c.A885G p.E295E GACTAATTCAACC . 216.0 56.0 230.0 0.0 . 140 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48413971 48413971 + Missense_Mutation SNP C C A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ABCA13 NM_152701 exon34 c.C11161A p.Q3721K TTTGGACAAGGGG . 137.0 30.0 121.0 0.0 . 1192 . . Atlas-SNP CHCHD3 54927 hgsc.bcm.edu hg19 7 132659975 132659975 + Missense_Mutation SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . CHCHD3 NM_017812 exon4 c.G323A p.R108Q CTCTCCCGAAGGA . 101.0 11.0 85.0 0.0 . 21 . . Atlas-SNP TEX15 56154 hgsc.bcm.edu hg19 8 30706087 30706087 + Silent SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 TEX15,NS,carcinoma,0,1 TEX15 NM_031271 exon1 c.T447C p.C149C GTCCTTACATTGC . 56.0 28.0 113.0 0.0 . 350 . . Atlas-SNP POTEA 340441 hgsc.bcm.edu hg19 8 43173614 43173614 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . POTEA NM_001005365 exon9 c.C1036T p.Q346X GAAATGCAGAAGC . 129.0 94.0 268.0 1.0 . 87 . . Atlas-SNP TPD52 7163 hgsc.bcm.edu hg19 8 80954863 80954863 + Missense_Mutation SNP T T A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . TPD52 NM_001025252 exon5 c.A547T p.N183Y TTAAGTTTTCGAC . 107.0 20.0 52.0 0.0 . 40 . . Atlas-SNP NECAB1 64168 hgsc.bcm.edu hg19 8 91836943 91836943 + Splice_Site SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . NECAB1 NM_022351 exon3 c.125-2A>T . CATTTCAGATGAT . 328.0 44.0 179.0 0.0 . 31 . . Atlas-SNP TOP1MT 116447 hgsc.bcm.edu hg19 8 144416922 144416922 + Missense_Mutation SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . TOP1MT NM_052963 exon1 c.G110A p.G37D CCACTGCCCTTCT . 256.0 85.0 150.0 0.0 . 63 . . Atlas-SNP ZNF7 7553 hgsc.bcm.edu hg19 8 146068419 146068419 + Missense_Mutation SNP T T G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ZNF7 NM_003416 exon5 c.T1927G p.F643V AAGATATTTAGGT . 205.0 38.0 126.0 0.0 . 62 . . Atlas-SNP ZNF7 7553 hgsc.bcm.edu hg19 8 146068438 146068438 + Missense_Mutation SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ZNF7 NM_003416 exon5 c.T1946C p.L649P CACACCTAATTAT . 215.0 34.0 139.0 0.0 . 62 . . Atlas-SNP C9orf64 84267 hgsc.bcm.edu hg19 9 86559849 86559849 + Missense_Mutation SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . C9orf64 NM_032307 exon3 c.G653A p.S218N AATACACTCCACG . 80.0 35.0 101.0 0.0 . 28 . . Atlas-SNP ABCA1 19 hgsc.bcm.edu hg19 9 107571793 107571793 + Missense_Mutation SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ABCA1 NM_005502 exon30 c.A4228G p.K1410E GGTCTTTGGTGAG . 114.0 37.0 144.0 0.0 . 244 . . Atlas-SNP KIAA0368 23392 hgsc.bcm.edu hg19 9 114187765 114187765 + Missense_Mutation SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . KIAA0368 NM_001080398 exon13 c.T1682C p.I561T ATCTTGATTTCTG . 169.0 50.0 214.0 0.0 . 144 . . Atlas-SNP OR1L4 254973 hgsc.bcm.edu hg19 9 125486747 125486747 + Missense_Mutation SNP G G A rs370090548 TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . OR1L4 NM_001005235 exon1 c.G479A p.R160H TGTTCCGCGTGCT . 89.0 24.0 130.0 0.0 . 38 . . Atlas-SNP SLC25A25 114789 hgsc.bcm.edu hg19 9 130866085 130866085 + Silent SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . SLC25A25 NM_001006641 exon5 c.G714T p.T238T CTGCACGGCCCCC . 60.0 23.0 87.0 0.0 . 119 . . Atlas-SNP ANAPC2 29882 hgsc.bcm.edu hg19 9 140075299 140075299 + Silent SNP A A G rs371943537 TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ANAPC2 NM_013366 exon8 c.T1551C p.N517N GTACTCATTGATG . 39.0 13.0 59.0 0.0 . 57 . . Atlas-SNP ANAPC2 29882 hgsc.bcm.edu hg19 9 140075345 140075345 + Missense_Mutation SNP A A C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ANAPC2 NM_013366 exon8 c.T1505G p.I502S AGGCTGATGATGT . 47.0 22.0 61.0 0.0 . 57 . . Atlas-SNP GDI2 2665 hgsc.bcm.edu hg19 10 5836921 5836921 + Silent SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . GDI2 NM_001494 exon4 c.T315A p.T105T CCCTTCAGTCACT . 166.0 83.0 143.0 0.0 . 26 . . Atlas-SNP SFMBT2 57713 hgsc.bcm.edu hg19 10 7217971 7217971 + Silent SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . SFMBT2 NM_001029880 exon17 c.T1965C p.I655I GGTATGAATGGAG . 92.0 49.0 77.0 0.0 . 209 . . Atlas-SNP RTKN2 219790 hgsc.bcm.edu hg19 10 63958086 63958086 + Missense_Mutation SNP C C G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . RTKN2 NM_145307 exon12 c.G1411C p.A471P GTGTGGCCCAAGG . 106.0 58.0 98.0 0.0 . 68 . . Atlas-SNP P4HA1 5033 hgsc.bcm.edu hg19 10 74810812 74810812 + Missense_Mutation SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . P4HA1 NM_001142596 exon7 c.T899C p.M300T TTTACCATTTTGA . 102.0 59.0 88.0 0.0 . 86 . . Atlas-SNP LOXL4 84171 hgsc.bcm.edu hg19 10 100013487 100013487 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . LOXL4 NM_032211 exon11 c.T1658A p.L553H TGGCTGAGCGGGC . 76.0 14.0 82.0 0.0 . 60 . . Atlas-SNP MGEA5 10724 hgsc.bcm.edu hg19 10 103557782 103557782 + Missense_Mutation SNP T T A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . MGEA5 NM_012215 exon10 c.A1939T p.I647F TCTTGATATCCCA . 70.0 37.0 90.0 0.0 . 53 . . Atlas-SNP ADAM12 8038 hgsc.bcm.edu hg19 10 127753435 127753435 + Missense_Mutation SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ADAM12 NM_021641 exon14 c.T1558C p.Y520H AGCAGTAGCCGTC . 51.0 13.0 63.0 0.0 . 388 . . Atlas-SNP WT1 7490 hgsc.bcm.edu hg19 11 32456885 32456885 + Missense_Mutation SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . WT1 NM_024424 exon1 c.G7A p.D3N CCGGGTCCTGCAG . 148.0 50.0 203.0 0.0 . 744 . . Atlas-SNP CAT 847 hgsc.bcm.edu hg19 11 34478274 34478274 + Silent SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . CAT NM_001752 exon8 c.A966G p.P322P GAATCCAGTTAAT . 119.0 48.0 166.0 0.0 . 42 . . Atlas-SNP SLC22A9 114571 hgsc.bcm.edu hg19 11 63176251 63176251 + Missense_Mutation SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . SLC22A9 NM_080866 exon9 c.A1501G p.I501V TGGATCATCTATG . 111.0 38.0 147.0 0.0 . 77 . . Atlas-SNP RAB30 27314 hgsc.bcm.edu hg19 11 82693383 82693383 + Missense_Mutation SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . RAB30 NM_014488 exon6 c.A436G p.M146V AATACATGTCCTG . 77.0 30.0 82.0 0.0 . 28 . . Atlas-SNP ARHGEF12 23365 hgsc.bcm.edu hg19 11 120350697 120350697 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ARHGEF12 NM_015313 exon38 c.A3795T p.Q1265H GGTGCAACAGCTA . 108.0 40.0 114.0 0.0 . 133 . . Atlas-SNP CLEC6A 93978 hgsc.bcm.edu hg19 12 8612284 8612284 + Silent SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . CLEC6A NM_001007033 exon3 c.A213G p.T71T AGGGACAAAGGTG . 63.0 18.0 82.0 0.0 . 19 . . Atlas-SNP ABCD2 225 hgsc.bcm.edu hg19 12 40012907 40012907 + Silent SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ABCD2 NM_005164 exon1 c.T511C p.L171L AAGCCAATTTGCA . 223.0 96.0 263.0 0.0 . 127 . . Atlas-SNP HDAC7 51564 hgsc.bcm.edu hg19 12 48179583 48179583 + Silent SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . HDAC7 NM_015401 exon23 c.C2658A p.A886A ACAGATGGCTGTG . 135.0 53.0 189.0 0.0 . 71 . . Atlas-SNP SYT1 6857 hgsc.bcm.edu hg19 12 79837902 79837902 + Missense_Mutation SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . SYT1 NM_001135805 exon11 c.G978T p.K326N GAAGAAGAAAAAG . 93.0 31.0 142.0 0.0 . 70 . . Atlas-SNP OTOGL 283310 hgsc.bcm.edu hg19 12 80707277 80707277 + Missense_Mutation SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . OTOGL NM_173591 exon30 c.A3445G p.K1149E TTTGCCAAAAATT . 98.0 34.0 115.0 0.0 . 235 . . Atlas-SNP AMDHD1 144193 hgsc.bcm.edu hg19 12 96360166 96360166 + Missense_Mutation SNP C C G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . AMDHD1 NM_152435 exon8 c.C1073G p.S358C GAATGTCCATGCC . 75.0 24.0 78.0 0.0 . 56 . . Atlas-SNP HCAR2 338442 hgsc.bcm.edu hg19 12 123187347 123187347 + Missense_Mutation SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . HCAR2 NM_177551 exon1 c.C484A p.L162I TCAGGAGGTGGAC . 145.0 27.0 109.0 0.0 . 36 . . Atlas-SNP WASF3 10810 hgsc.bcm.edu hg19 13 27255212 27255212 + Silent SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . WASF3 NM_006646 exon8 c.G738A p.T246T CGTTACGGATTAC . 159.0 61.0 169.0 0.0 . 68 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103393484 103393484 + Missense_Mutation SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . . NM_001146197 exon4 c.A9563G p.K3188R TTCTCTTTATTCT . 74.0 31.0 107.0 0.0 . . . . Atlas-SNP ANG 283 hgsc.bcm.edu hg19 14 21162046 21162046 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ANG NM_001097577 exon2 c.A323T p.H108L AGCTACATGGAGG . 202.0 55.0 216.0 0.0 . 8 . . Atlas-SNP RPGRIP1 57096 hgsc.bcm.edu hg19 14 21790033 21790033 + Missense_Mutation SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . RPGRIP1 NM_020366 exon13 c.G1632A p.M544I AATGATGACAAAA . 159.0 48.0 159.0 0.0 . 213 . . Atlas-SNP RPGRIP1 57096 hgsc.bcm.edu hg19 14 21790034 21790034 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . RPGRIP1 NM_020366 exon13 c.A1633T p.T545S ATGATGACAAAAG . 156.0 46.0 161.0 0.0 . 213 . . Atlas-SNP STXBP6 29091 hgsc.bcm.edu hg19 14 25325147 25325147 + Missense_Mutation SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . STXBP6 NM_014178 exon4 c.T446C p.M149T CCTCCCATAATTT . 101.0 25.0 93.0 0.0 . 22 . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68257468 68257468 + Missense_Mutation SNP T T A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ZFYVE26 NM_015346 exon15 c.A2576T p.K859M GAGGACTTCAGGT . 121.0 53.0 154.0 0.0 . 223 . . Atlas-SNP PTPN21 11099 hgsc.bcm.edu hg19 14 88945839 88945839 + Missense_Mutation SNP C C A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . PTPN21 NM_007039 exon13 c.G1936T p.G646C CCAGGCCGTGGCT . 33.0 12.0 33.0 0.0 . 113 . . Atlas-SNP TTC8 123016 hgsc.bcm.edu hg19 14 89336480 89336480 + Missense_Mutation SNP C C G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . TTC8 NM_144596 exon11 c.C987G p.I329M AGCCATCGCATGC . 110.0 44.0 142.0 0.0 . 42 . . Atlas-SNP TBC1D2B 23102 hgsc.bcm.edu hg19 15 78305207 78305207 + Missense_Mutation SNP G G T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . TBC1D2B NM_144572 exon9 c.C2228A p.S743Y CGCCAGGAGAAGG . 98.0 78.0 122.0 0.0 . 104 . . Atlas-SNP PRSS21 10942 hgsc.bcm.edu hg19 16 2867809 2867809 + Nonsense_Mutation SNP C C A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . PRSS21 NM_144957 exon3 c.C99A p.C33X ACCATGCGGCCGA . 60.0 8.0 95.0 0.0 . 32 . . Atlas-SNP RBFOX1 54715 hgsc.bcm.edu hg19 16 7726804 7726804 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . RBFOX1 NM_145891 exon11 c.A1022T p.Q341L ACGCCCAGCCTAC . 39.0 20.0 64.0 0.0 . 341 . . Atlas-SNP ORAI3 93129 hgsc.bcm.edu hg19 16 30964577 30964577 + Silent SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ORAI3 NM_152288 exon2 c.C300T p.A100A CAGTGCCTGCACC . 43.0 5.0 62.0 0.0 . 19 . . Atlas-SNP YBX2 51087 hgsc.bcm.edu hg19 17 7193784 7193784 + Missense_Mutation SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . YBX2 NM_015982 exon5 c.G530A p.R177Q TTACGTCGGTTGG . 74.0 20.0 95.0 0.0 . 28 . . Atlas-SNP ZBTB4 57659 hgsc.bcm.edu hg19 17 7366504 7366504 + Silent SNP A A C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ZBTB4 NM_001128833 exon4 c.T1797G p.P599P CAGTGGAGGTGGA . 26.0 9.0 22.0 0.0 . 163 . . Atlas-SNP NF1 4763 hgsc.bcm.edu hg19 17 29586118 29586118 + Missense_Mutation SNP T T A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . NF1 NM_001042492 exon33 c.T4401A p.F1467L TGATTTTGTGAAA . 114.0 5.0 132.0 0.0 . 1586 . . Atlas-SNP ARHGAP23 57636 hgsc.bcm.edu hg19 17 36666304 36666304 + Missense_Mutation SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ARHGAP23 NM_001199417 exon24 c.A3572G p.D1191G CCGACGACGACTC . 24.0 5.0 32.0 0.0 . 48 . . Atlas-SNP G6PC 2538 hgsc.bcm.edu hg19 17 41063257 41063257 + Silent SNP C C G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . G6PC NM_000151 exon5 c.C888G p.L296L CCGCCTCAGCTCT . 104.0 30.0 140.0 0.0 . 48 . . Atlas-SNP MRC2 9902 hgsc.bcm.edu hg19 17 60742244 60742244 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . MRC2 NM_006039 exon2 c.C454T p.Q152X GGTGACCAGACCC . 59.0 22.0 86.0 0.0 . 126 . . Atlas-SNP OSBPL1A 114876 hgsc.bcm.edu hg19 18 21948322 21948322 + Missense_Mutation SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . OSBPL1A NM_080597 exon3 c.A136G p.N46D CCAAGTTAGACTT . 426.0 151.0 476.0 0.0 . 94 . . Atlas-SNP C19orf26 255057 hgsc.bcm.edu hg19 19 1231033 1231033 + Silent SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 .,1 C19orf26 NM_152769 exon9 c.T1221C p.P407P CCGCCTAGGGGGG . 59.0 28.0 103.0 1.0 . 31 . . Atlas-SNP CNN1 1264 hgsc.bcm.edu hg19 19 11660435 11660435 + Missense_Mutation SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . CNN1 NM_001299 exon7 c.C719T p.T240M GCGACACGCTCAA . 103.0 35.0 134.0 0.0 . 34 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 39055621 39055621 + Missense_Mutation SNP T T A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . RYR1 NM_000540 exon91 c.T12647A p.F4216Y GCCAGTTCATCTT . 706.0 277.0 984.0 0.0 . 708 . . Atlas-SNP PSG8 440533 hgsc.bcm.edu hg19 19 43268178 43268178 + Missense_Mutation SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . PSG8 NM_001130167 exon2 c.T320C p.L107P ATCAGCAGGGATG . 69.0 23.0 113.0 0.0 . 101 . . Atlas-SNP ZNF45 7596 hgsc.bcm.edu hg19 19 44419099 44419099 + Silent SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ZNF45 NM_003425 exon10 c.C489T p.P163P TTTGTAGGGTTTT . 76.0 28.0 71.0 0.0 . 51 . . Atlas-SNP EHD2 30846 hgsc.bcm.edu hg19 19 48221838 48221838 + Silent SNP G G A rs369297316 alternate_allele TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . EHD2 NM_014601 exon3 c.G477A p.S159S CCTGTCGGGTGCC . 55.0 21.0 56.0 0.0 . 59 . . Atlas-SNP POLD1 5424 hgsc.bcm.edu hg19 19 50902183 50902183 + Silent SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . POLD1 NM_002691 exon2 c.T75C p.D25D GGATGATGATGAT . 78.0 20.0 117.0 0.0 . 174 . . Atlas-SNP ZNF841 284371 hgsc.bcm.edu hg19 19 52569046 52569046 + Missense_Mutation SNP C C A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ZNF841 NM_001136499 exon7 c.G2089T p.A697S ATCTTGCAAGTTT . 125.0 6.0 139.0 0.0 . 183 . . Atlas-SNP EPS8L1 54869 hgsc.bcm.edu hg19 19 55592156 55592156 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . EPS8L1 NM_133180 exon7 c.A446T p.E149V TCCGAGAGGACAT . 179.0 73.0 210.0 0.0 . 122 . . Atlas-SNP WISP2 8839 hgsc.bcm.edu hg19 20 43353453 43353453 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . WISP2 NM_003881 exon3 c.A352T p.S118C CACTGCAGCATCC . 150.0 37.0 155.0 0.0 . 28 . . Atlas-SNP BAGE3 85318 hgsc.bcm.edu hg19 21 11058299 11058299 + Missense_Mutation SNP C C G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . . NM_182481 exon3 c.G141C p.L47F TGGCTCCAAAGTG . 225.0 12.0 346.0 0.0 . . . . Atlas-SNP GRIK1 2897 hgsc.bcm.edu hg19 21 31062249 31062249 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . GRIK1 NM_175611 exon3 c.T343A p.S115T TGACGGAGGAGCT . 93.0 43.0 130.0 0.0 . 293 . . Atlas-SNP DOPEY2 9980 hgsc.bcm.edu hg19 21 37617730 37617730 + Missense_Mutation SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . DOPEY2 NM_005128 exon19 c.G3452A p.G1151E CCATGGGGGGCAG . 70.0 25.0 80.0 0.0 . 184 . . Atlas-SNP PRMT2 3275 hgsc.bcm.edu hg19 21 48064248 48064248 + Missense_Mutation SNP A A T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . PRMT2 NM_001242864 exon4 c.A175T p.I59F ATTCTTATCCTGA . 78.0 33.0 105.0 0.0 . 48 . . Atlas-SNP NCF4 4689 hgsc.bcm.edu hg19 22 37271978 37271978 + Missense_Mutation SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . NCF4 NM_013416 exon8 c.C911T p.P304L AACGTCCAGGGTG . 112.0 35.0 178.0 0.0 . 66 . . Atlas-SNP HDX 139324 hgsc.bcm.edu hg19 X 83588776 83588776 + Silent SNP C C T novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . HDX NM_144657 exon8 c.G1815A p.L605L ATAATCCAAGAAA . 270.0 220.0 199.0 0.0 . 124 . . Atlas-SNP HDX 139324 hgsc.bcm.edu hg19 X 83588777 83588777 + Missense_Mutation SNP A A C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . HDX NM_144657 exon8 c.T1814G p.L605W TAATCCAAGAAAG . 271.0 223.0 199.0 0.0 . 124 . . Atlas-SNP ARMCX2 9823 hgsc.bcm.edu hg19 X 100911840 100911840 + Silent SNP A A G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ARMCX2 NM_014782 exon5 c.T735C p.P245P TGTTCTAGGGGAA . 75.0 4.0 52.0 0.0 . 75 . . Atlas-SNP AIFM1 9131 hgsc.bcm.edu hg19 X 129265689 129265689 + Missense_Mutation SNP T T C rs369259253 TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . AIFM1 NM_004208 exon14 c.A1534G p.T512A GTGCAGTTGCTTT . 115.0 97.0 94.0 0.0 . 75 . . Atlas-SNP ABCD1 215 hgsc.bcm.edu hg19 X 153005587 153005587 + Silent SNP C C G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . ABCD1 NM_000033 exon6 c.C1530G p.G510G CAATGGCTGCGGC . 85.0 41.0 52.0 0.0 . 59 . . Atlas-SNP COX2 5743 hgsc.bcm.edu hg19 MT 7907 7907 + Missense_Mutation SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . . ENST00000361739 exon1 c.T322C p.Y108H TGAACCTACGAGT . 117.0 19.0 18.0 0.0 . . . . Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 10827 10827 + Missense_Mutation SNP T T C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . . ENST00000361381 exon1 c.T68C p.I23T ACATAATTTGAAT . 119.0 15.0 12.0 0.0 . . . . Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 15431 15431 + Missense_Mutation SNP G G A novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . . ENST00000361789 exon1 c.G685A p.A229T AAAGACGCCCTCG . 108.0 102.0 14.0 0.0 . . . . Atlas-SNP TMEM81 388730 hgsc.bcm.edu hg19 1 205052921 205052921 + Frame_Shift_Del DEL A A - novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . TMEM81 NM_203376 exon1 c.529delG p.G177fs . . 253.0 104.0 148.0 0.0 . 23 . . Atlas-INDEL APOB 338 hgsc.bcm.edu hg19 2 21234820 21234821 + Frame_Shift_Ins INS - - G novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . APOB NM_000384 exon26 c.4920_4921insC p.A1640fs . . 62.0 26.0 56.0 0.0 . 761 . . Atlas-INDEL DNM1L 10059 hgsc.bcm.edu hg19 12 32883956 32883977 + Frame_Shift_Del DEL GTGCTAGAATTTGTTATATTTT GTGCTAGAATTTGTTATATTTT - novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 GTGCTAGAATTTGTTATATTTT GTGCTAGAATTTGTTATATTTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . DNM1L NM_012062 exon10 c.1087_1108del p.363_370del . . 87.0 13.0 120.0 0.0 . 52 . . Atlas-INDEL FREM2 341640 hgsc.bcm.edu hg19 13 39265017 39265018 + Frame_Shift_Ins INS - - C novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . FREM2 NM_207361 exon1 c.3536_3537insC p.F1179fs . . 101.0 40.0 142.0 0.0 . 385 . . Atlas-INDEL FAM71C 196472 hgsc.bcm.edu hg19 12 100043076 100043076 + Frame_Shift_Del DEL T T - novel TCGA-DD-AAE9-01A-11D-A40R-10 TCGA-DD-AAE9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 870e02bb-395f-439a-99fd-00d1054e69d9 864a2672-99b0-4252-9953-5feb85ff19d6 . FAM71C NM_153364 exon2 c.625delA p.M209X . . 65.0 19.0 93.0 0.0 . 48 . . Atlas-INDEL