Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
AIM1L	55057	hgsc.bcm.edu	hg19	1	26663754	26663754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	AIM1L	NM_001039775	exon10	c.T3761C	p.V1254A	CGGATGACCCGGA	.	119.0	7.0	80.0	0.0	.	98	.	.	Atlas-SNP
SYCP1	6847	hgsc.bcm.edu	hg19	1	115400064	115400064	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	SYCP1	NM_003176	exon5	c.238-1G>A	.	TTTTTAGGTTGGT	.	261.0	65.0	265.0	0.0	.	149	.	.	Atlas-SNP
FCRL2	79368	hgsc.bcm.edu	hg19	1	157736740	157736740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	FCRL2	NM_030764	exon7	c.A1184G	p.D395G	ATGAGGTCTCTTC	.	440.0	90.0	326.0	0.0	.	104	.	.	Atlas-SNP
OR6P1	128366	hgsc.bcm.edu	hg19	1	158532627	158532627	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	OR6P1	NM_001160325	exon1	c.C768A	p.L256L	GGTGAAGAGAGTG	.	140.0	22.0	113.0	0.0	.	47	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186024715	186024715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	HMCN1	NM_031935	exon45	c.G7053T	p.K2351N	GCTGAAGAACATT	.	231.0	12.0	156.0	0.0	.	797	.	.	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	hg19	1	201009074	201009074	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	CACNA1S	NM_000069	exon44	c.G5507C	p.R1836P	GCCTCTCGTCCTT	.	42.0	16.0	41.0	0.0	.	249	.	.	Atlas-SNP
LMOD1	25802	hgsc.bcm.edu	hg19	1	201869293	201869293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	LMOD1	NM_012134	exon2	c.A848G	p.K283R	TCATCCTTGGCTT	.	132.0	18.0	98.0	0.0	.	59	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	50318473	50318473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	NRXN1	NM_001135659	exon20	c.C3826T	p.R1276C	GGTAGCGCTCGAT	.	79.0	9.0	69.0	0.0	.	1118	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	50765499	50765499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	NRXN1	NM_001135659	exon11	c.C2155A	p.P719T	GGCACGGTTTTGC	.	152.0	41.0	160.0	0.0	.	1118	.	.	Atlas-SNP
CD8B	926	hgsc.bcm.edu	hg19	2	87085479	87085479	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	CD8B	NM_004931	exon2	c.A104T	p.K35M	ACCATCTTGTTGG	.	289.0	92.0	235.0	0.0	.	37	.	.	Atlas-SNP
CNGA3	1261	hgsc.bcm.edu	hg19	2	99012463	99012463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	CNGA3	NM_001298	exon8	c.G830A	p.R277H	TCAACCGCCTACT	.	176.0	12.0	182.0	0.0	.	118	.	.	Atlas-SNP
MAP4K4	9448	hgsc.bcm.edu	hg19	2	102501674	102501674	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	MAP4K4	NM_145686	exon27	c.G3213A	p.L1071L	ATTTCTGGTGATT	.	84.0	19.0	104.0	0.0	.	111	.	.	Atlas-SNP
STK39	27347	hgsc.bcm.edu	hg19	2	168986082	168986082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	STK39	NM_013233	exon10	c.G1058T	p.R353I	GGTGTTCTTGTAA	.	194.0	52.0	194.0	0.0	.	95	.	.	Atlas-SNP
SMARCAL1	50485	hgsc.bcm.edu	hg19	2	217293425	217293425	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	SMARCAL1	NM_014140	exon7	c.A1254C	p.P418P	CACGCCAGATGTC	.	78.0	18.0	74.0	0.0	.	93	.	.	Atlas-SNP
TCAIM	285343	hgsc.bcm.edu	hg19	3	44442703	44442703	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	.	NM_173826	exon10	c.A1127T	p.Y376F	ACAGATATGCTCC	.	74.0	18.0	95.0	0.0	.	.	.	.	Atlas-SNP
ARGFX	503582	hgsc.bcm.edu	hg19	3	121305241	121305241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	ARGFX	NM_001012659	exon5	c.C742T	p.H248Y	TCTTTCCACTGTC	.	85.0	22.0	90.0	0.0	.	36	.	.	Atlas-SNP
ACAP2	23527	hgsc.bcm.edu	hg19	3	195102681	195102681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	ACAP2	NM_012287	exon3	c.A182G	p.N61S	ATCCCATTCATGA	.	262.0	90.0	254.0	0.0	.	72	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195474197	195474197	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	MUC4	NM_018406	exon25	c.C16089T	p.S5363S	TTTCATGCTCAGG	.	286.0	18.0	241.0	0.0	.	1505	.	.	Atlas-SNP
RGS12	6002	hgsc.bcm.edu	hg19	4	3318452	3318452	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	RGS12	NM_002926	exon2	c.T555A	p.S185R	TGAAAGTATAAAT	.	87.0	16.0	93.0	0.0	.	128	.	.	Atlas-SNP
YTHDC1	91746	hgsc.bcm.edu	hg19	4	69179827	69179827	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	YTHDC1	NM_001031732	exon17	c.A2174C	p.Y725S	CTTCTATATCGAC	.	62.0	21.0	104.0	0.0	.	81	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74272394	74272394	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	ALB	NM_000477	exon3	c.T186G	p.D62E	TGAAGATCATGTA	.	45.0	12.0	70.0	0.0	.	132	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155157584	155157584	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	DCHS2	NM_017639	exon25	c.C6855A	p.V2285V	AGCTTGGACAGTT	.	159.0	71.0	196.0	0.0	.	594	.	.	Atlas-SNP
IRX1	79192	hgsc.bcm.edu	hg19	5	3599701	3599701	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	IRX1	NM_024337	exon2	c.C639G	p.D213E	GGGCGACCCGGAG	.	225.0	61.0	179.0	0.0	.	106	.	.	Atlas-SNP
FAM174A	345757	hgsc.bcm.edu	hg19	5	99871534	99871534	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	FAM174A	NM_198507	exon1	c.C300T	p.A100A	GAAGGCCGGGGAA	.	116.0	39.0	81.0	0.0	.	13	.	.	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	hg19	5	135551937	135551937	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	TRPC7	NM_020389	exon11	c.A2370G	p.R790R	GACGTATCTTTTT	.	75.0	17.0	53.0	0.0	.	126	.	.	Atlas-SNP
C6orf47	57827	hgsc.bcm.edu	hg19	6	31627256	31627256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	C6orf47	NM_021184	exon1	c.T469C	p.W157R	GCAGCCAGCCCAA	.	91.0	7.0	85.0	0.0	.	15	.	.	Atlas-SNP
C6orf47	57827	hgsc.bcm.edu	hg19	6	31627264	31627264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	C6orf47	NM_021184	exon1	c.T461C	p.L154P	CCCAACAGCTTCT	.	83.0	6.0	78.0	0.0	.	15	.	.	Atlas-SNP
GPR115	221393	hgsc.bcm.edu	hg19	6	47681900	47681900	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	GPR115	NM_153838	exon6	c.T919C	p.L307L	GCCCACTTGCAAA	.	109.0	9.0	110.0	0.0	.	140	.	.	Atlas-SNP
IBTK	25998	hgsc.bcm.edu	hg19	6	82941527	82941527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	IBTK	NM_015525	exon4	c.A451G	p.T151A	AATTTGTATTATC	.	82.0	26.0	94.0	0.0	.	128	.	.	Atlas-SNP
PNRC1	10957	hgsc.bcm.edu	hg19	6	89793582	89793582	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	PNRC1	NM_006813	exon2	c.A651C	p.K217N	AAGCAAATATAAC	.	343.0	25.0	363.0	0.0	.	17	.	.	Atlas-SNP
CEP57L1	285753	hgsc.bcm.edu	hg19	6	109484145	109484145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	CEP57L1,NS,carcinoma,0,1	CEP57L1	NM_173830	exon11	c.G1355A	p.R452K	AATTGAGAAGAGA	.	331.0	92.0	321.0	0.0	.	24	.	.	Atlas-SNP
C6orf170	221322	hgsc.bcm.edu	hg19	6	121563446	121563446	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.,1	C6orf170	NM_152730	exon18	c.T2058C	p.H686H	AGCAAAATGTAGT	.	125.0	10.0	154.0	0.0	.	146	.	.	Atlas-SNP
PRKAR2B	5577	hgsc.bcm.edu	hg19	7	106799922	106799922	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	PRKAR2B	NM_002736	exon11	c.T1152C	p.L384L	AAGGCTTCTGGGA	.	97.0	9.0	92.0	0.0	.	34	.	.	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	hg19	8	30695229	30695229	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	TEX15	NM_031271	exon3	c.G7422T	p.G2474G	AAGCGTCCCATGG	.	90.0	34.0	129.0	0.0	.	350	.	.	Atlas-SNP
PRDM14	63978	hgsc.bcm.edu	hg19	8	70971011	70971011	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	PRDM14	NM_024504	exon6	c.A1250C	p.K417T	AGGTGCTTATCTC	.	112.0	21.0	111.0	0.0	.	102	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	35.0	5.0	41.0	1.0	.	384	.	.	Atlas-SNP
SPATA31C2	645961	hgsc.bcm.edu	hg19	9	90747470	90747470	+	Missense_Mutation	SNP	G	G	T	rs200958103	bycluster	TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	.	NM_001166137	exon4	c.C482A	p.P161Q	GGATCCGGGGAAG	.	99.0	47.0	122.0	0.0	.	.	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	96054796	96054796	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	WNK2	NM_006648	exon22	c.T5049A	p.P1683P	GAGACCTGCACGT	.	80.0	8.0	104.0	0.0	.	277	.	.	Atlas-SNP
ZNF248	57209	hgsc.bcm.edu	hg19	10	38121809	38121809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	ZNF248	NM_001267597	exon6	c.G474C	p.K158N	ACAGTTCTTTTTA	.	298.0	27.0	206.0	0.0	.	61	.	.	Atlas-SNP
DUSP8	1850	hgsc.bcm.edu	hg19	11	1578679	1578679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	DUSP8	NM_004420	exon7	c.C947T	p.T316M	TCCGGCGTCCCTG	.	29.0	11.0	26.0	0.0	.	22	.	.	Atlas-SNP
RRM1	6240	hgsc.bcm.edu	hg19	11	4159583	4159583	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	RRM1	NM_001033	exon19	c.T2349C	p.N783N	GGAGAATAGAGAT	.	70.0	14.0	95.0	0.0	.	31	.	.	Atlas-SNP
MRGPRF	116535	hgsc.bcm.edu	hg19	11	68772956	68772956	+	Silent	SNP	G	G	A	rs144312357		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	MRGPRF,NS,carcinoma,0,2	MRGPRF	NM_001098515	exon3	c.C822T	p.Y274Y	AGTGACGTACTCG	.	116.0	28.0	104.0	0.0	.	22	.	G|1.000;A|0.000	Atlas-SNP
ZBTB16	7704	hgsc.bcm.edu	hg19	11	113934393	113934393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	ZBTB16	NM_006006	exon2	c.C371A	p.T124N	TGGAGACCATCCA	.	109.0	20.0	76.0	0.0	.	101	.	.	Atlas-SNP
TPI1	7167	hgsc.bcm.edu	hg19	12	6978268	6978268	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	TPI1	NM_001159287	exon3	c.G356C	p.G119A	GCCCTGGCATGAT	.	78.0	6.0	75.0	0.0	.	64	.	.	Atlas-SNP
SLC2A13	114134	hgsc.bcm.edu	hg19	12	40153944	40153944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	SLC2A13	NM_052885	exon10	c.A1831G	p.N611D	GCCTGTTGTCAAA	.	88.0	14.0	76.0	0.0	.	91	.	.	Atlas-SNP
NFYB	4801	hgsc.bcm.edu	hg19	12	104519915	104519915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	NFYB	NM_006166	exon4	c.A208C	p.N70H	TGGCATTTTTCAT	.	55.0	14.0	65.0	0.0	.	11	.	.	Atlas-SNP
LPAR6	10161	hgsc.bcm.edu	hg19	13	48986448	48986448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	LPAR6	NM_001162497	exon5	c.G112T	p.A38S	ATATGGCAACACA	.	64.0	5.0	107.0	0.0	.	38	.	.	Atlas-SNP
SLITRK5	26050	hgsc.bcm.edu	hg19	13	88328839	88328839	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	SLITRK5	NM_015567	exon2	c.A1196T	p.E399V	AGATCGAGAGCAT	.	47.0	11.0	44.0	0.0	.	192	.	.	Atlas-SNP
EFNB2	1948	hgsc.bcm.edu	hg19	13	107164955	107164955	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	EFNB2	NM_004093	exon2	c.T328A	p.F110I	TGGTGAATTTGAT	.	207.0	16.0	167.0	0.0	.	39	.	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	hg19	14	52534630	52534630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	NID2	NM_007361	exon2	c.G480T	p.W160C	CTGCTCCCAGGTG	.	126.0	42.0	103.0	0.0	.	201	.	.	Atlas-SNP
PLD4	122618	hgsc.bcm.edu	hg19	14	105395137	105395137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	PLD4	NM_138790	exon4	c.C336A	p.S112R	CGGCAGCCCCTCT	.	94.0	31.0	104.0	0.0	.	46	.	.	Atlas-SNP
BRF1	2972	hgsc.bcm.edu	hg19	14	105766805	105766805	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	BRF1	NM_001519	exon1	c.G162A	p.V54V	CTGGCCCACGGCC	.	46.0	18.0	63.0	0.0	.	102	.	.	Atlas-SNP
FAN1	22909	hgsc.bcm.edu	hg19	15	31203039	31203039	+	Missense_Mutation	SNP	A	A	G	rs373034831	alternate_allele	TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	FAN1	NM_001146095	exon4	c.A1598G	p.Q533R	TGTTACAGTAAAA	.	123.0	35.0	104.0	0.0	.	77	.	.	Atlas-SNP
NDUFAF1	51103	hgsc.bcm.edu	hg19	15	41688875	41688875	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	NDUFAF1	NM_016013	exon2	c.G383C	p.R128P	TTCCCCCGGAATT	.	140.0	29.0	123.0	0.0	.	39	.	.	Atlas-SNP
EEF2K	29904	hgsc.bcm.edu	hg19	16	22291589	22291589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	EEF2K	NM_013302	exon17	c.G1960A	p.G654S	GAGGGCGGTGAGT	.	56.0	21.0	108.0	0.0	.	142	.	.	Atlas-SNP
VAC14	55697	hgsc.bcm.edu	hg19	16	70731096	70731096	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	VAC14	NM_018052	exon16	c.C1901G	p.S634C	CAGAGGGACACCG	.	135.0	8.0	151.0	0.0	.	65	.	.	Atlas-SNP
FTSJD1	55783	hgsc.bcm.edu	hg19	16	71317949	71317949	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	FTSJD1	NM_018348	exon3	c.A1875G	p.L625L	CAAAAATAAACGC	.	73.0	36.0	101.0	0.0	.	70	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11539972	11539972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	DNAH9	NM_001372	exon9	c.C1657T	p.L553F	GGAAACCTCCTTG	.	125.0	8.0	87.0	0.0	.	695	.	.	Atlas-SNP
SPHK1	8877	hgsc.bcm.edu	hg19	17	74383560	74383560	+	Missense_Mutation	SNP	G	G	A	rs55648239	bycluster	TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	SPHK1	NM_182965	exon6	c.G1306A	p.V436M	GAGGCCGTGCAGG	.	67.0	19.0	63.0	0.0	.	24	.	.	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41073990	41073990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	SPTBN4	NM_020971	exon31	c.A6758T	p.E2253V	GGCAAGAGTCAGT	.	137.0	7.0	149.0	0.0	.	213	.	.	Atlas-SNP
TRAPPC6A	79090	hgsc.bcm.edu	hg19	19	45668161	45668161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	TRAPPC6A	NM_024108	exon3	c.T262C	p.W88R	CCACCCACAGGTC	.	82.0	27.0	69.0	0.0	.	16	.	.	Atlas-SNP
GGTLC1	92086	hgsc.bcm.edu	hg19	20	23965975	23965975	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	GGTLC1	NM_178311	exon6	c.C556A	p.R186R	GGTGCCGGGTCTC	.	135.0	7.0	143.0	0.0	.	37	.	.	Atlas-SNP
ELMO2	63916	hgsc.bcm.edu	hg19	20	45002045	45002045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	ELMO2	NM_182764	exon15	c.T1409A	p.F470Y	TTGTTGAAGTCCT	.	65.0	13.0	56.0	0.0	.	51	.	.	Atlas-SNP
ITGB2	3689	hgsc.bcm.edu	hg19	21	46314957	46314957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	ITGB2	NM_000211	exon9	c.C1012A	p.P338T	ACTTGGGGATGAT	.	48.0	8.0	64.0	0.0	.	107	.	.	Atlas-SNP
PMM1	5372	hgsc.bcm.edu	hg19	22	41973917	41973917	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	PMM1	NM_002676	exon7	c.C561T	p.I187I	AAAGCTGATCATG	.	104.0	18.0	68.0	0.0	.	21	.	.	Atlas-SNP
RPS6KA6	27330	hgsc.bcm.edu	hg19	X	83419338	83419338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	RPS6KA6	NM_014496	exon2	c.C139A	p.H47N	TTACATGACAAGA	.	288.0	34.0	327.0	0.0	.	116	.	.	Atlas-SNP
ARMCX1	51309	hgsc.bcm.edu	hg19	X	100808335	100808335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	ARMCX1	NM_016608	exon4	c.G422C	p.S141T	CACCGAGTTTACC	.	94.0	60.0	76.0	0.0	.	67	.	.	Atlas-SNP
ANAPC1	64682	hgsc.bcm.edu	hg19	2	112560035	112560035	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	ANAPC1	NM_022662	exon33	c.4192delT	p.F1398fs	.	.	951.0	145.0	919.0	0.0	.	116	.	.	Atlas-INDEL
TP53	7157	hgsc.bcm.edu	hg19	17	7577023	7577033	+	Frame_Shift_Del	DEL	CTTAGTGCTCC	CTTAGTGCTCC	-	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	CTTAGTGCTCC	CTTAGTGCTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	TP53_ENST00000455263,NS,adenocarcinoma,0,166	TP53	NM_001126112	exon8	c.906_916del	p.302_306del	.	.	73.0	22.0	71.0	0.0	.	33396	.	.	Atlas-INDEL
EBF4	57593	hgsc.bcm.edu	hg19	20	2733101	2733133	+	In_Frame_Del	DEL	GGCGGCTACGGCGCGCCGGGCGTGGCCGGCCTC	GGCGGCTACGGCGCGCCGGGCGTGGCCGGCCTC	-	novel		TCGA-DD-AAE8-01A-11D-A40R-10	TCGA-DD-AAE8-10A-01D-A40U-10	GGCGGCTACGGCGCGCCGGGCGTGGCCGGCCTC	GGCGGCTACGGCGCGCCGGGCGTGGCCGGCCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0b6c61a-a389-4f78-a06a-a7cb308657de	bce559c8-f5e9-41a2-8339-05113ef1a254	.	.	NM_001110514	exon15	c.1437_1469del	p.479_490del	.	.	66.0	25.0	24.0	0.0	.	.	.	.	Atlas-INDEL