Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm SLC2A5 6518 hgsc.bcm.edu hg19 1 9098489 9098489 + Splice_Site SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SLC2A5 NM_003039 exon11 c.1174+1G>A . TACGTACTGGGCC . 65.0 20.0 70.0 0.0 . 77 . . Atlas-SNP LRRC38 126755 hgsc.bcm.edu hg19 1 13839858 13839858 + Silent SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . LRRC38 NM_001010847 exon1 c.C231T p.I77I GTAGAAGATGAAG . 135.0 40.0 150.0 0.0 . 12 . . Atlas-SNP ARID1A 8289 hgsc.bcm.edu hg19 1 27101213 27101213 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ARID1A NM_006015 exon18 c.C4495T p.Q1499X ATGTGGCAGGGGC . 97.0 5.0 68.0 0.0 . 842 . . Atlas-SNP RAB42 115273 hgsc.bcm.edu hg19 1 28920207 28920207 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . RAB42 NM_001193532 exon2 c.T235A p.C79S CCCAGGTGCATCA . 38.0 10.0 34.0 0.0 . 10 . . Atlas-SNP SNRNP40 9410 hgsc.bcm.edu hg19 1 31766196 31766196 + Splice_Site SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SNRNP40 NM_004814 exon3 c.142-1G>T . AGGTCCCTAAACA . 102.0 22.0 81.0 0.0 . 18 . . Atlas-SNP GNL2 29889 hgsc.bcm.edu hg19 1 38061409 38061409 + Silent SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . GNL2 NM_013285 exon1 c.G15A p.K5K TTTGTACTTGGGC . 61.0 13.0 73.0 0.0 . 58 . . Atlas-SNP TOE1 114034 hgsc.bcm.edu hg19 1 45809148 45809148 + Missense_Mutation SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TOE1 NM_025077 exon8 c.G1307A p.G436E GGGATGGATTGCA . 88.0 28.0 59.0 0.0 . 27 . . Atlas-SNP MAST2 23139 hgsc.bcm.edu hg19 1 46497890 46497890 + Silent SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MAST2 NM_015112 exon25 c.A3228T p.P1076P GTCCCCACATTCT . 77.0 25.0 58.0 0.0 . 136 . . Atlas-SNP NRD1 4898 hgsc.bcm.edu hg19 1 52281991 52281991 + Silent SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NRD1 NM_002525 exon13 c.A1636C p.R546R TTTTCCTAAGGAA . 428.0 118.0 236.0 0.0 . 89 . . Atlas-SNP MYSM1 114803 hgsc.bcm.edu hg19 1 59158557 59158557 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MYSM1 NM_001085487 exon3 c.T194C p.I65T TTCTCAATAACAG . 66.0 18.0 35.0 0.0 . 50 . . Atlas-SNP DOCK7 85440 hgsc.bcm.edu hg19 1 62941590 62941590 + Missense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DOCK7 NM_001271999 exon45 c.G5716A p.E1906K ATGGCTCCACATA . 64.0 16.0 27.0 0.0 . 184 . . Atlas-SNP ST6GALNAC5 81849 hgsc.bcm.edu hg19 1 77334301 77334301 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ST6GALNAC5 NM_030965 exon2 c.A135G p.Q45Q GCAGCAACAGCAG . 98.0 4.0 131.0 0.0 . 59 . . Atlas-SNP WDR63 126820 hgsc.bcm.edu hg19 1 85551546 85551546 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . WDR63 NM_145172 exon7 c.A573G p.E191E AAGTGAATTTGGT . 265.0 82.0 147.0 0.0 . 91 . . Atlas-SNP CSF1 1435 hgsc.bcm.edu hg19 1 110464543 110464543 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CSF1 NM_172210 exon5 c.G471T p.K157N AACAAAGAATCTC . 242.0 67.0 211.0 0.0 . 40 . . Atlas-SNP LRIF1 55791 hgsc.bcm.edu hg19 1 111492489 111492489 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . LRIF1 NM_018372 exon3 c.A1853C p.E618A TCTCCTTCCTTCA . 79.0 21.0 47.0 0.0 . 65 . . Atlas-SNP NRAS 4893 hgsc.bcm.edu hg19 1 115256463 115256463 + Missense_Mutation SNP G G C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NRAS NM_002524 exon3 c.C248G p.A83G TTGATGGCAAATA . 84.0 28.0 64.0 0.0 . 3766 . . Atlas-SNP NBPF10 100132406 hgsc.bcm.edu hg19 1 145304497 145304497 + Missense_Mutation SNP A A C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NBPF10 NM_001039703 exon10 c.A1430C p.E477A TGGAGGAATGTGC . 125.0 19.0 68.0 0.0 . 221 . . Atlas-SNP SLC27A3 11000 hgsc.bcm.edu hg19 1 153747926 153747926 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SLC27A3 NM_024330 exon1 c.T94C p.F32L GGGATGTTTGCGA . 42.0 13.0 51.0 0.0 . 42 . . Atlas-SNP FAM189B 10712 hgsc.bcm.edu hg19 1 155220590 155220590 + Silent SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . FAM189B NM_006589 exon9 c.G987A p.L329L CAGCACCAGAGAC . 75.0 30.0 63.0 0.0 . 51 . . Atlas-SNP PKLR 5313 hgsc.bcm.edu hg19 1 155269945 155269945 + Missense_Mutation SNP A A C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe .,1 PKLR NM_000298 exon2 c.T227G p.L76R ATGTCCAGTAGGC . 156.0 36.0 85.0 0.0 . 70 . . Atlas-SNP PMF1 11243 hgsc.bcm.edu hg19 1 156195414 156195414 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PMF1 NM_001199654 exon2 c.A228G p.K76K TGTGAAACAGGCC . 155.0 54.0 101.0 0.0 . 12 . . Atlas-SNP NIT1 4817 hgsc.bcm.edu hg19 1 161089103 161089103 + Missense_Mutation SNP G G C rs149045755 alternate_allele TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NIT1 NM_001185092 exon3 c.G278C p.R93P TTGCACGGGACCC . 105.0 22.0 98.0 0.0 . 41 . G|1.000;A|0.000 Atlas-SNP TBX19 9095 hgsc.bcm.edu hg19 1 168282157 168282157 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TBX19 NM_005149 exon8 c.A1264G p.T422A ACCTGGACAGCAG . 86.0 4.0 94.0 0.0 . 68 . . Atlas-SNP METTL13 51603 hgsc.bcm.edu hg19 1 171751168 171751168 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . METTL13 NM_015935 exon1 c.T61C p.F21L AAGTTCTTCCAGC . 118.0 28.0 100.0 0.0 . 67 . . Atlas-SNP EDEM3 80267 hgsc.bcm.edu hg19 1 184681698 184681698 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . EDEM3 NM_025191 exon14 c.T1405C p.Y469H AAAGATATTTAAA . 186.0 67.0 59.0 0.0 . 63 . . Atlas-SNP SYT14 255928 hgsc.bcm.edu hg19 1 210187041 210187041 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SYT14 NM_001146264 exon4 c.T260G p.L87R TGCTCCTTTTTCT . 97.0 19.0 40.0 0.0 . 89 . . Atlas-SNP CENPF 1063 hgsc.bcm.edu hg19 1 214811265 214811265 + Missense_Mutation SNP A A C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CENPF NM_016343 exon11 c.A1503C p.E501D CAGAGAAGTCTGC . 575.0 27.0 309.0 0.0 . 321 . . Atlas-SNP EPRS 2058 hgsc.bcm.edu hg19 1 220156627 220156627 + Silent SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . EPRS NM_004446 exon22 c.C3204A p.I1068I TTTCTTGATCTCA . 294.0 97.0 188.0 0.0 . 140 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237948162 237948162 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe RYR2,right_upper_lobe,carcinoma,0,1 RYR2 NM_001035 exon90 c.C13150A p.L4384M CTGGATCTGAAGA . 92.0 28.0 51.0 0.0 . 1273 . . Atlas-SNP AKT3 10000 hgsc.bcm.edu hg19 1 243809237 243809237 + Silent SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . AKT3 NM_001206729 exon5 c.A387T p.G129G TTCCTCTCCTATA . 36.0 13.0 23.0 0.0 . 177 . . Atlas-SNP SH3YL1 26751 hgsc.bcm.edu hg19 2 231165 231165 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SH3YL1 NM_001159597 exon7 c.A560G p.Y187C ATGTCATAAGCTC . 95.0 25.0 43.0 0.0 . 49 . . Atlas-SNP PPM1G 5496 hgsc.bcm.edu hg19 2 27606940 27606940 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PPM1G NM_177983 exon6 c.A845T p.D282V TAGCCATCCTCTT . 56.0 5.0 40.0 0.0 . 42 . . Atlas-SNP IFT172 26160 hgsc.bcm.edu hg19 2 27668656 27668656 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . IFT172 NM_015662 exon45 c.G4870T p.D1624Y GAATGTCTGTATC . 109.0 31.0 96.0 0.0 . 119 . . Atlas-SNP FAM179A 165186 hgsc.bcm.edu hg19 2 29237345 29237345 + Missense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . FAM179A NM_199280 exon8 c.C962T p.T321M CTCCCACGCTGAC . 62.0 30.0 70.0 0.0 . 106 . . Atlas-SNP SPTBN1 6711 hgsc.bcm.edu hg19 2 54870184 54870184 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SPTBN1 NM_003128 exon19 c.A3923G p.N1308S CCAGAAATCTGCA . 157.0 29.0 118.0 0.0 . 378 . . Atlas-SNP EML6 400954 hgsc.bcm.edu hg19 2 55191747 55191747 + Missense_Mutation SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . EML6 NM_001039753 exon37 c.G5371A p.E1791K TCTTCTGAACACA . 112.0 34.0 86.0 0.0 . 85 . . Atlas-SNP UGP2 7360 hgsc.bcm.edu hg19 2 64118290 64118290 + Missense_Mutation SNP A A C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . UGP2 NM_006759 exon10 c.A1456C p.I486L GACAGAATTGATA . 108.0 33.0 69.0 0.0 . 38 . . Atlas-SNP CEP68 23177 hgsc.bcm.edu hg19 2 65299207 65299207 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CEP68 NM_015147 exon3 c.A977T p.D326V CAGCTGACCCTGT . 38.0 19.0 28.0 0.0 . 69 . . Atlas-SNP LOXL3 84695 hgsc.bcm.edu hg19 2 74761507 74761507 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . LOXL3 NM_032603 exon11 c.T1875C p.N625N GGTGCCATTTGGG . 111.0 34.0 68.0 0.0 . 73 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84896476 84896476 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DNAH6 NM_001370 exon38 c.T6148A p.W2050R GATCCCTGGGAAC . 133.0 34.0 97.0 0.0 . 194 . . Atlas-SNP TMEM127 55654 hgsc.bcm.edu hg19 2 96930988 96930988 + Silent SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TMEM127 NM_001193304 exon2 c.G132A p.L44L AGTGCACAGCGCC . 953.0 275.0 958.0 1.0 . 13 . . Atlas-SNP RANBP2 5903 hgsc.bcm.edu hg19 2 109383255 109383255 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . RANBP2 NM_006267 exon20 c.A6260G p.H2087R CTAATCATTGGAT . 53.0 12.0 34.0 0.0 . 488 . . Atlas-SNP ORC4 5000 hgsc.bcm.edu hg19 2 148715877 148715877 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ORC4 NM_002552 exon6 c.A377G p.D126G ACTTTATCTCCAA . 127.0 48.0 63.0 0.0 . 40 . . Atlas-SNP EPC2 26122 hgsc.bcm.edu hg19 2 149528862 149528862 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . EPC2 NM_015630 exon10 c.A1626T p.E542D TGAAGAATGTACC . 241.0 52.0 156.0 0.0 . 57 . . Atlas-SNP SCN9A 6335 hgsc.bcm.edu hg19 2 167136943 167136943 + Nonsense_Mutation SNP A A C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SCN9A NM_002977 exon14 c.T2234G p.L745X GTGTTTAAAACTA . 123.0 32.0 73.0 0.0 . 296 . . Atlas-SNP NOSTRIN 115677 hgsc.bcm.edu hg19 2 169721359 169721359 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NOSTRIN NM_001171631 exon21 c.T1571C p.I524T TGATTATACACGA . 77.0 22.0 45.0 0.0 . 68 . . Atlas-SNP TLK1 9874 hgsc.bcm.edu hg19 2 171974343 171974343 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TLK1 NM_012290 exon2 c.T164A p.L55Q GGATCCAGACTAT . 43.0 11.0 24.0 0.0 . 134 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179583266 179583266 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TTN NM_001267550 exon85 c.T24567C p.V8189V CTCGAGAACTATG . 121.0 34.0 65.0 0.0 . 18412 . . Atlas-SNP NBEAL1 65065 hgsc.bcm.edu hg19 2 203996708 203996708 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NBEAL1 NM_001114132 exon25 c.A3490G p.M1164V GAACAAATGTTGA . 218.0 64.0 93.0 0.0 . 266 . . Atlas-SNP MAP2 4133 hgsc.bcm.edu hg19 2 210569340 210569340 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MAP2 NM_001039538 exon9 c.A683G p.N228S CAGGGAACAAGGT . 343.0 32.0 202.0 0.0 . 372 . . Atlas-SNP CHPF 79586 hgsc.bcm.edu hg19 2 220406657 220406657 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CHPF NM_024536 exon2 c.A569G p.D190G AAGTCGTCGCCGT . 103.0 32.0 102.0 0.0 . 56 . . Atlas-SNP FANCD2 2177 hgsc.bcm.edu hg19 3 10084812 10084812 + Silent SNP T T C rs370641659 TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . FANCD2 NM_001018115 exon12 c.T967C p.L323L GTAAAGTTGAAAA . 87.0 33.0 81.0 0.0 . 253 . . Atlas-SNP EOMES 8320 hgsc.bcm.edu hg19 3 27763601 27763601 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . EOMES NM_005442 exon1 c.A185T p.E62V ACCGCCTCGCAGG . 60.0 17.0 89.0 0.0 . 65 . . Atlas-SNP VIPR1 7433 hgsc.bcm.edu hg19 3 42576555 42576555 + Missense_Mutation SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . VIPR1 NM_004624 exon11 c.G1099A p.E367K AAGCCTGAAGTGA . 77.0 22.0 74.0 0.0 . 45 . . Atlas-SNP CCDC71 64925 hgsc.bcm.edu hg19 3 49200857 49200857 + Missense_Mutation SNP G G C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CCDC71 NM_022903 exon2 c.C785G p.T262S GACCCAGTGGCTC . 55.0 9.0 42.0 0.0 . 33 . . Atlas-SNP WDR82 80335 hgsc.bcm.edu hg19 3 52304771 52304771 + Silent SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . WDR82 NM_025222 exon2 c.T216A p.T72T TGCATGAGTGTAT . 91.0 24.0 46.0 0.0 . 19 . . Atlas-SNP LRIG1 26018 hgsc.bcm.edu hg19 3 66431958 66431958 + Silent SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . LRIG1 NM_015541 exon17 c.A2715G p.K905K CGGCTCTTTGTGA . 68.0 25.0 56.0 0.0 . 138 . . Atlas-SNP PPP4R2 151987 hgsc.bcm.edu hg19 3 73113262 73113262 + Silent SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PPP4R2 NM_174907 exon7 c.G603A p.E201E CAAAGAGGCAAAT . 233.0 61.0 136.0 0.0 . 30 . . Atlas-SNP FILIP1L 11259 hgsc.bcm.edu hg19 3 99567920 99567920 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . FILIP1L NM_182909 exon5 c.A2600C p.K867T TTGGATTTCATCC . 107.0 31.0 83.0 0.0 . 154 . . Atlas-SNP TRIM42 287015 hgsc.bcm.edu hg19 3 140401678 140401678 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TRIM42 NM_152616 exon2 c.A716T p.Q239L TCTGCCAGGTCTG . 56.0 6.0 56.0 0.0 . 143 . . Atlas-SNP TSC22D2 9819 hgsc.bcm.edu hg19 3 150127758 150127758 + Silent SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TSC22D2 NM_014779 exon1 c.T621G p.T207T CAGTACTTTTGAC . 84.0 17.0 60.0 0.0 . 42 . . Atlas-SNP SERP1 27230 hgsc.bcm.edu hg19 3 150262283 150262283 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SERP1 NM_014445 exon3 c.A163G p.I55V GGAAAATTGCTGT . 283.0 72.0 217.0 0.0 . 9 . . Atlas-SNP DHX36 170506 hgsc.bcm.edu hg19 3 154022720 154022720 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DHX36 NM_020865 exon8 c.A1010G p.H337R CTTTCATGGATTT . 249.0 11.0 151.0 0.0 . 98 . . Atlas-SNP IFT80 57560 hgsc.bcm.edu hg19 3 160099508 160099508 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . IFT80 NM_020800 exon3 c.A42C p.Q14H TAATTCTTGATGT . 116.0 9.0 75.0 0.0 . 68 . . Atlas-SNP DVL3 1857 hgsc.bcm.edu hg19 3 183884260 183884260 + Missense_Mutation SNP G G C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DVL3 NM_004423 exon9 c.G930C p.M310I GAACATGAGTAAT . 164.0 8.0 111.0 0.0 . 68 . . Atlas-SNP VPS8 23355 hgsc.bcm.edu hg19 3 184642719 184642719 + Missense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . VPS8 NM_001009921 exon29 c.C2524T p.L842F CGGCAGCTTGCAA . 66.0 10.0 43.0 0.0 . 109 . . Atlas-SNP ADIPOQ 9370 hgsc.bcm.edu hg19 3 186572334 186572334 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ADIPOQ NM_001177800 exon4 c.T576A p.N192K GGAAAATAATGTG . 107.0 25.0 80.0 0.0 . 35 . . Atlas-SNP DLG1 1739 hgsc.bcm.edu hg19 3 197009694 197009694 + Silent SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DLG1 NM_001204386 exon4 c.G174A p.V58V TAAGGTCACTTCA . 102.0 24.0 66.0 0.0 . 120 . . Atlas-SNP DLG1 1739 hgsc.bcm.edu hg19 3 197023325 197023325 + Missense_Mutation SNP A A C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DLG1 NM_001204386 exon3 c.T43G p.L15V CCTCCAAAAGGTG . 79.0 22.0 62.0 0.0 . 120 . . Atlas-SNP WFS1 7466 hgsc.bcm.edu hg19 4 6279336 6279336 + Missense_Mutation SNP C C T rs111773340 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . WFS1 NM_001145853 exon2 c.C154T p.P52S CCTGGCCCTGGTG . 152.0 10.0 177.0 0.0 . 71 . C|0.999;A|0.001 Atlas-SNP TLR6 10333 hgsc.bcm.edu hg19 4 38828947 38828947 + Silent SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TLR6 NM_006068 exon2 c.C2148A p.L716L AAAATAGAGTTCG . 137.0 6.0 75.0 0.0 . 67 . . Atlas-SNP TXK 7294 hgsc.bcm.edu hg19 4 48096195 48096195 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TXK NM_003328 exon8 c.A608G p.Y203C ATCTGATAATGTT . 45.0 11.0 35.0 0.0 . 58 . . Atlas-SNP SCARB2 950 hgsc.bcm.edu hg19 4 77095407 77095407 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SCARB2 NM_005506 exon7 c.A884G p.Y295C ACTTTATACCGAA . 122.0 41.0 68.0 0.0 . 47 . . Atlas-SNP WDFY3 23001 hgsc.bcm.edu hg19 4 85639621 85639621 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . WDFY3 NM_014991 exon48 c.A7708T p.M2570L CTGTCATGGTAAA . 102.0 24.0 64.0 0.0 . 314 . . Atlas-SNP SLC39A8 64116 hgsc.bcm.edu hg19 4 103236884 103236884 + Missense_Mutation SNP A A C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SLC39A8 NM_022154 exon2 c.T323G p.L108W AAGTTCAATTGCT . 155.0 27.0 104.0 0.0 . 24 . . Atlas-SNP CFI 3426 hgsc.bcm.edu hg19 4 110687778 110687778 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CFI NM_000204 exon2 c.A260C p.Q87P TTTTGTTGACAGT . 100.0 24.0 87.0 0.0 . 59 . . Atlas-SNP TBC1D9 23158 hgsc.bcm.edu hg19 4 141543436 141543436 + Silent SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TBC1D9 NM_015130 exon21 c.C3714T p.A1238A AATCCTGGCCATC . 127.0 15.0 138.0 0.0 . 198 . . Atlas-SNP PALLD 23022 hgsc.bcm.edu hg19 4 169835138 169835138 + Missense_Mutation SNP C C G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PALLD NM_001166108 exon16 c.C2683G p.P895A CGAAGTCCCCGGT . 109.0 8.0 64.0 0.0 . 179 . . Atlas-SNP GLRA3 8001 hgsc.bcm.edu hg19 4 175580328 175580328 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . GLRA3 NM_001042543 exon8 c.T948C p.I316I AATATCAATAGCT . 80.0 23.0 52.0 0.0 . 76 . . Atlas-SNP TLR3 7098 hgsc.bcm.edu hg19 4 186997921 186997921 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TLR3 NM_003265 exon2 c.C148A p.P50T GATCTACCCACAA . 87.0 30.0 81.0 0.0 . 83 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13718998 13718998 + Silent SNP T T C rs141935657 TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DNAH5 NM_001369 exon72 c.A12492G p.T4164T ACTATATGTTCTT . 85.0 30.0 65.0 0.0 . 868 . T|1.000;C|0.000 Atlas-SNP NPR3 4883 hgsc.bcm.edu hg19 5 32739134 32739134 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NPR3 NM_000908 exon3 c.T1057A p.Y353N GAGGATTACGTAA . 58.0 16.0 43.0 0.0 . 65 . . Atlas-SNP RICTOR 253260 hgsc.bcm.edu hg19 5 38945618 38945618 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . RICTOR NM_152756 exon34 c.A4608T p.Q1536H ACTCAGTTGGTTG . 89.0 27.0 64.0 0.0 . 182 . . Atlas-SNP MAST4 375449 hgsc.bcm.edu hg19 5 66396331 66396331 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MAST4 NM_001164664 exon8 c.C981A p.F327L ACACTTCTTATCA . 83.0 5.0 67.0 0.0 . 218 . . Atlas-SNP HMGCR 3156 hgsc.bcm.edu hg19 5 74650335 74650335 + Missense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . HMGCR NM_001130996 exon12 c.C1376T p.A459V AAGGTGCAAAATT . 77.0 10.0 46.0 0.0 . 53 . . Atlas-SNP AP3B1 8546 hgsc.bcm.edu hg19 5 77423969 77423969 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . AP3B1 NM_003664 exon17 c.A1853G p.Q618R CCAAGCTGGAAAT . 76.0 29.0 33.0 0.0 . 94 . . Atlas-SNP ERAP1 51752 hgsc.bcm.edu hg19 5 96117490 96117490 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ERAP1 NM_001198541 exon16 c.T2354C p.L785P CTATAAAGAAAAT . 65.0 14.0 47.0 0.0 . 59 . . Atlas-SNP PCDHA3 56145 hgsc.bcm.edu hg19 5 140181280 140181280 + Silent SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PCDHA3 NM_031497 exon1 c.G498A p.S166S AAATTCGTTGTTG . 96.0 34.0 68.0 0.0 . 396 . . Atlas-SNP MRPL22 29093 hgsc.bcm.edu hg19 5 154330405 154330405 + Missense_Mutation SNP C C G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MRPL22 NM_014180 exon3 c.C102G p.H34Q TATCCACACAAGT . 67.0 5.0 44.0 0.0 . 18 . . Atlas-SNP GABRA6 2559 hgsc.bcm.edu hg19 5 161128536 161128536 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . GABRA6 NM_000811 exon9 c.G1119T p.R373S GAAAAGGATCACT . 81.0 25.0 48.0 0.0 . 139 . . Atlas-SNP CDHR2 54825 hgsc.bcm.edu hg19 5 176018233 176018233 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CDHR2 NM_017675 exon29 c.A3562G p.M1188V CAAGCTATGAAGG . 91.0 22.0 97.0 0.0 . 152 . . Atlas-SNP SLC34A1 6569 hgsc.bcm.edu hg19 5 176813072 176813072 + Missense_Mutation SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SLC34A1 NM_003052 exon3 c.G194A p.G65E CCTGTGGGGAGGT . 100.0 8.0 107.0 0.0 . 73 . . Atlas-SNP NUP153 9972 hgsc.bcm.edu hg19 6 17675798 17675798 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NUP153 NM_005124 exon3 c.A538C p.N180H AGATGTTATCATC . 132.0 24.0 95.0 0.0 . 116 . . Atlas-SNP ETV7 51513 hgsc.bcm.edu hg19 6 36334437 36334437 + Silent SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ETV7 NM_016135 exon8 c.A1011T p.P337P GATTTCTGGCCTC . 76.0 20.0 61.0 0.0 . 31 . . Atlas-SNP MEP1A 4224 hgsc.bcm.edu hg19 6 46794122 46794122 + Silent SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MEP1A NM_005588 exon9 c.T810C p.T270T CTGTACTTTTGAG . 92.0 33.0 50.0 0.0 . 93 . . Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51889983 51889983 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PKHD1 NM_170724 exon32 c.A4625C p.D1542A GCCAAGTCTCTTG . 87.0 22.0 75.0 0.0 . 927 . . Atlas-SNP GSTA4 2941 hgsc.bcm.edu hg19 6 52850272 52850272 + Silent SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . GSTA4 NM_001512 exon4 c.C249A p.G83G GTTCTTGCCAAAG . 118.0 28.0 97.0 0.0 . 20 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56401645 56401645 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DST NM_015548 exon43 c.A8833G p.T2945A TGCTAGTGCTTTT . 100.0 27.0 54.0 0.0 . 1427 . . Atlas-SNP NT5E 4907 hgsc.bcm.edu hg19 6 86194984 86194984 + Silent SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe NT5E,rectum,carcinoma,0,1 NT5E NM_001204813 exon4 c.G783T p.G261G TGCTGGGAAGTAC . 67.0 19.0 56.0 0.0 . 56 . . Atlas-SNP AKIRIN2 55122 hgsc.bcm.edu hg19 6 88387595 88387595 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . AKIRIN2 NM_018064 exon3 c.A470C p.K157T CGTTCTTTCAACA . 86.0 29.0 52.0 0.0 . 13 . . Atlas-SNP CCNC 892 hgsc.bcm.edu hg19 6 100016396 100016396 + Missense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CCNC NM_005190 exon1 c.G8A p.G3E AAGTTCCCTGCCA . 72.0 7.0 77.0 0.0 . 23 . . Atlas-SNP AKD1 221264 hgsc.bcm.edu hg19 6 109863371 109863371 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . AKD1 NM_001145128 exon27 c.C3229A p.P1077T CTTCTGGAAGCTA . 98.0 29.0 50.0 0.0 . 223 . . Atlas-SNP TAAR2 9287 hgsc.bcm.edu hg19 6 132938564 132938564 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TAAR2 NM_001033080 exon2 c.G781T p.A261S TTTTGGCAGCTTT . 152.0 46.0 92.0 0.0 . 45 . . Atlas-SNP HBS1L 10767 hgsc.bcm.edu hg19 6 135357985 135357985 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . HBS1L NM_001145207 exon5 c.A1610C p.N537T TTGTTGTTTTTCT . 99.0 26.0 53.0 0.0 . 75 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138584345 138584345 + Silent SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . KIAA1244 NM_020340 exon12 c.T1725C p.T575T CATAACTAACTTC . 75.0 30.0 84.0 0.0 . 236 . . Atlas-SNP THBS2 7058 hgsc.bcm.edu hg19 6 169650830 169650830 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . THBS2 NM_003247 exon3 c.A50C p.Q17P TCACCTTGCGTGC . 125.0 38.0 77.0 0.0 . 230 . . Atlas-SNP HDAC9 9734 hgsc.bcm.edu hg19 7 18687484 18687484 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . HDAC9 NM_178425 exon9 c.A1112G p.Y371C GGCAGTATGGAGG . 106.0 37.0 73.0 0.0 . 560 . . Atlas-SNP STK31 56164 hgsc.bcm.edu hg19 7 23776654 23776654 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . STK31 NM_031414 exon8 c.A974G p.K325R GTTATAAGGCGTT . 29.0 10.0 29.0 0.0 . 175 . . Atlas-SNP ZNF679 168417 hgsc.bcm.edu hg19 7 63720639 63720639 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF679 NM_153363 exon3 c.T80A p.L27Q TCTCTCTGGAGGA . 168.0 50.0 109.0 0.0 . 80 . . Atlas-SNP ARPC1B 10095 hgsc.bcm.edu hg19 7 98985732 98985732 + Silent SNP G G A rs373569413 TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ARPC1B NM_005720 exon4 c.G240A p.T80T GTGGACGCTGAAG . 146.0 44.0 161.0 0.0 . 41 . . Atlas-SNP AGFG2 3268 hgsc.bcm.edu hg19 7 100148104 100148104 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . AGFG2 NM_006076 exon3 c.T401C p.F134S AGGAGTTTCTCCA . 70.0 19.0 57.0 0.0 . 44 . . Atlas-SNP CALU 813 hgsc.bcm.edu hg19 7 128394594 128394594 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CALU NM_001199672 exon4 c.A257G p.D86G TTGTAGATAAAAT . 190.0 56.0 133.0 0.0 . 42 . . Atlas-SNP TTI2 80185 hgsc.bcm.edu hg19 8 33361357 33361357 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . . NM_001265581 exon5 c.G1024T p.V342F GCAGGACCTCATC . 45.0 17.0 58.0 0.0 . . . . Atlas-SNP UNC5D 137970 hgsc.bcm.edu hg19 8 35579903 35579903 + Silent SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . UNC5D NM_080872 exon9 c.A1293T p.T431T CAAAACAGTCCGT . 41.0 7.0 68.0 0.0 . 393 . . Atlas-SNP INTS8 55656 hgsc.bcm.edu hg19 8 95884163 95884163 + Silent SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . INTS8 NM_017864 exon21 c.T2466G p.V822V GCTAGTTCGATAT . 75.0 25.0 42.0 0.0 . 92 . . Atlas-SNP ZNF706 51123 hgsc.bcm.edu hg19 8 102213861 102213861 + Missense_Mutation SNP A A C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF706 NM_001042510 exon3 c.T109G p.L37V ATATTAAGGCAGC . 60.0 10.0 59.0 0.0 . 12 . . Atlas-SNP ATP6V1C1 528 hgsc.bcm.edu hg19 8 104065039 104065039 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ATP6V1C1 NM_001695 exon6 c.A462G p.E154E TTTGGAACGAAAG . 65.0 17.0 39.0 0.0 . 33 . . Atlas-SNP KLHL38 340359 hgsc.bcm.edu hg19 8 124664885 124664885 + Silent SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . KLHL38 NM_001081675 exon1 c.G282A p.T94T CTCCCCCGTATAC . 108.0 29.0 82.0 0.0 . 81 . . Atlas-SNP HHLA1 10086 hgsc.bcm.edu hg19 8 133099901 133099901 + Silent SNP C C G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . HHLA1 NM_001145095 exon9 c.G675C p.L225L CTCACCCAGAACA . 146.0 33.0 73.0 0.0 . 35 . . Atlas-SNP ZNF7 7553 hgsc.bcm.edu hg19 8 146068016 146068016 + Missense_Mutation SNP G G C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF7 NM_003416 exon5 c.G1524C p.Q508H CAGTCAGAGTTCC . 127.0 63.0 49.0 0.0 . 62 . . Atlas-SNP JAK2 3717 hgsc.bcm.edu hg19 9 5081813 5081813 + Silent SNP T T G rs112584696 alternate_allele TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . JAK2 NM_004972 exon19 c.T2523G p.P841P GGATCCTACACAG . 132.0 7.0 76.0 0.0 . 35466 . T|0.500;C|0.500 Atlas-SNP SPATA31C2 645961 hgsc.bcm.edu hg19 9 90746809 90746809 + Silent SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . . NM_001166137 exon4 c.G1143A p.A381A CTGCGACGCAGGG . 75.0 20.0 67.0 0.0 . . . . Atlas-SNP FIBCD1 84929 hgsc.bcm.edu hg19 9 133799206 133799206 + Silent SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . FIBCD1 NM_001145106 exon5 c.C774T p.Y258Y GACAGAGTAGACG . 127.0 47.0 116.0 0.0 . 34 . . Atlas-SNP COMMD3-BMI1 0 hgsc.bcm.edu hg19 10 22605353 22605353 + Missense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . . NM_001204062 exon1 c.C7T p.L3F ATGGAGCTCTCGG . 76.0 28.0 94.0 0.0 . . . . Atlas-SNP AGAP6 414189 hgsc.bcm.edu hg19 10 51768608 51768608 + Silent SNP G G C rs71245228 TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe AGAP6,NS,carcinoma,0,2 AGAP6 NM_001077665 exon8 c.G723C p.T241T ACCCACGCCCGTT . 45.0 3.0 48.0 1.0 . 53 . G|0.500;C|0.500 Atlas-SNP PHYHIPL 84457 hgsc.bcm.edu hg19 10 60996312 60996312 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PHYHIPL NM_032439 exon3 c.A373G p.S125G TTTTTAAGCCCAA . 84.0 30.0 61.0 0.0 . 44 . . Atlas-SNP LGI1 9211 hgsc.bcm.edu hg19 10 95557391 95557391 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . LGI1 NM_005097 exon8 c.A1505G p.Y502C AAGTGTATAACTG . 1673.0 310.0 1022.0 0.0 . 69 . . Atlas-SNP BLOC1S2 282991 hgsc.bcm.edu hg19 10 102040753 102040753 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . BLOC1S2 NM_173809 exon3 c.A230G p.Y77C TCAAGATACTTCA . 89.0 5.0 46.0 0.0 . 10 . . Atlas-SNP WDR11 55717 hgsc.bcm.edu hg19 10 122626230 122626230 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . WDR11 NM_018117 exon8 c.A1144G p.I382V GTCATGATATGGG . 128.0 37.0 92.0 0.0 . 95 . . Atlas-SNP IPO7 10527 hgsc.bcm.edu hg19 11 9435885 9435885 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . IPO7 NM_006391 exon5 c.T563G p.L188R TCCAGCTTCTTTC . 78.0 24.0 49.0 0.0 . 72 . . Atlas-SNP EIF4G2 1982 hgsc.bcm.edu hg19 11 10823243 10823243 + Silent SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe EIF4G2,NS,carcinoma,0,1 EIF4G2 NM_001172705 exon14 c.C1378A p.R460R AAAACCGAGGTGG . 79.0 15.0 66.0 0.0 . 89 . . Atlas-SNP EIF4G2 1982 hgsc.bcm.edu hg19 11 10826502 10826502 + Silent SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . EIF4G2 NM_001172705 exon5 c.G309A p.V103V TACACCCACATTG . 125.0 15.0 78.0 0.0 . 89 . . Atlas-SNP HPS5 11234 hgsc.bcm.edu hg19 11 18333536 18333536 + Silent SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . HPS5 NM_181507 exon3 c.T144A p.A48A GCCCAAAGCCAAC . 80.0 22.0 58.0 0.0 . 70 . . Atlas-SNP PRR5L 79899 hgsc.bcm.edu hg19 11 36472812 36472812 + Silent SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PRR5L NM_024841 exon9 c.G639A p.L213L GGAGCTGGTGAAG . 116.0 29.0 78.0 0.0 . 35 . . Atlas-SNP SYT13 57586 hgsc.bcm.edu hg19 11 45307590 45307590 + Missense_Mutation SNP C C A rs139035860 bycluster;byfrequency;alternate_allele TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SYT13 NM_020826 exon1 c.G169T p.G57W CAGACCCGAGCAA . 66.0 19.0 66.0 0.0 . 45 . C|0.999;G|0.001 Atlas-SNP OR4D9 390199 hgsc.bcm.edu hg19 11 59282778 59282778 + Silent SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . OR4D9 NM_001004711 exon1 c.C393T p.H131H CCTGCACTATATG . 59.0 16.0 46.0 0.0 . 47 . . Atlas-SNP CHRM1 1128 hgsc.bcm.edu hg19 11 62678251 62678251 + Missense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CHRM1 NM_000738 exon2 c.G322A p.A108T TGCTGGCCACATA . 135.0 43.0 82.0 0.0 . 29 . . Atlas-SNP CCS 9973 hgsc.bcm.edu hg19 11 66367052 66367052 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CCS NM_005125 exon4 c.G373T p.G125W GAGCCTGGGCTGC . 196.0 54.0 207.0 0.0 . 22 . . Atlas-SNP MTNR1B 4544 hgsc.bcm.edu hg19 11 92714649 92714649 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MTNR1B NM_005959 exon2 c.T260A p.L87Q CTGACCTGGTGGT . 64.0 22.0 36.0 0.0 . 75 . . Atlas-SNP CCDC67 159989 hgsc.bcm.edu hg19 11 93104432 93104432 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CCDC67 NM_181645 exon7 c.C775T p.Q259X ATGTACCAAAGAC . 366.0 113.0 229.0 0.0 . 57 . . Atlas-SNP MAML2 84441 hgsc.bcm.edu hg19 11 95724767 95724767 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MAML2 NM_032427 exon3 c.A2260G p.M754V TTCCCATCAATTG . 97.0 6.0 63.0 0.0 . 94 . . Atlas-SNP C11orf70 85016 hgsc.bcm.edu hg19 11 101918604 101918604 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . C11orf70 NM_032930 exon2 c.T169A p.Y57N CAGTCCTATCGGA . 83.0 19.0 77.0 0.0 . 33 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105795386 105795386 + Missense_Mutation SNP G G T rs200205997 by1000genomes;alternate_allele TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . GRIA4 NM_001077243 exon12 c.G1738T p.D580Y CCAGAGGACGGAA . 185.0 12.0 111.0 0.0 . 380 . G|1.000;A|0.000 Atlas-SNP NXPE2 120406 hgsc.bcm.edu hg19 11 114550401 114550401 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . . NM_182495 exon2 c.G49T p.A17S CCAAATGCCATAG . 62.0 21.0 28.0 0.0 . . . . Atlas-SNP OR8D2 283160 hgsc.bcm.edu hg19 11 124190043 124190043 + Missense_Mutation SNP C C G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . OR8D2 NM_001002918 exon1 c.G51C p.L17F TTGTGTCAAGCCT . 69.0 18.0 54.0 0.0 . 65 . . Atlas-SNP VSIG2 23584 hgsc.bcm.edu hg19 11 124618302 124618302 + Missense_Mutation SNP C C G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . VSIG2 NM_014312 exon6 c.G835C p.G279R TACCCCCATATGT . 69.0 31.0 64.0 0.0 . 38 . . Atlas-SNP SLC6A13 6540 hgsc.bcm.edu hg19 12 330614 330614 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SLC6A13 NM_016615 exon14 c.T1614C p.A538A GGACAGAGCCAGG . 68.0 8.0 64.0 0.0 . 62 . . Atlas-SNP KCNA1 3736 hgsc.bcm.edu hg19 12 5020868 5020868 + Silent SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . KCNA1 NM_000217 exon2 c.G324T p.V108V CAACGTGCCCCTG . 65.0 14.0 97.0 0.0 . 112 . . Atlas-SNP A2M 2 hgsc.bcm.edu hg19 12 9262919 9262919 + Silent SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . A2M NM_000014 exon5 c.A495G p.V165V AATGTATACTAGT . 37.0 14.0 27.0 0.0 . 180 . . Atlas-SNP CLEC12A 160364 hgsc.bcm.edu hg19 12 10131563 10131563 + Splice_Site SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CLEC12A NM_001207010 exon3 c.122-2A>T . TTCCACAGCACCT . 73.0 15.0 50.0 0.0 . 65 . . Atlas-SNP LRP6 4040 hgsc.bcm.edu hg19 12 12332891 12332891 + Silent SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . LRP6 NM_002336 exon7 c.A1398T p.G466G AATTTCTCCCCAG . 115.0 23.0 59.0 0.0 . 170 . . Atlas-SNP PIK3C2G 5288 hgsc.bcm.edu hg19 12 18576952 18576952 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PIK3C2G NM_004570 exon17 c.A2360G p.Q787R GCATCCAGGTTGC . 100.0 26.0 64.0 0.0 . 315 . . Atlas-SNP ITGA5 3678 hgsc.bcm.edu hg19 12 54798981 54798981 + Silent SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ITGA5 NM_002205 exon12 c.C1194A p.P398P CCCCAGGGGGGTC . 149.0 29.0 146.0 0.0 . 99 . . Atlas-SNP ITGA5 3678 hgsc.bcm.edu hg19 12 54799001 54799001 + Missense_Mutation SNP A A C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ITGA5 NM_002205 exon12 c.T1174G p.F392V TGCCAAATCGGCC . 153.0 26.0 142.0 0.0 . 99 . . Atlas-SNP DGKA 1606 hgsc.bcm.edu hg19 12 56346937 56346937 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DGKA NM_201554 exon22 c.A2056G p.T686A GAGATCACCTTCC . 72.0 24.0 57.0 0.0 . 70 . . Atlas-SNP SMARCC2 6601 hgsc.bcm.edu hg19 12 56575848 56575848 + Silent SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SMARCC2 NM_139067 exon8 c.C648A p.I216I CGCTGGGATCCAC . 142.0 42.0 116.0 0.0 . 212 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70928714 70928714 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PTPRB NM_001109754 exon30 c.C6103A p.P2035T CCGCTGGCCAGTA . 97.0 25.0 88.0 0.0 . 676 . . Atlas-SNP SLC6A15 55117 hgsc.bcm.edu hg19 12 85279833 85279833 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SLC6A15 NM_018057 exon3 c.C304A p.P102T AATATGGTAAAAG . 174.0 58.0 102.0 0.0 . 159 . . Atlas-SNP HIP1R 9026 hgsc.bcm.edu hg19 12 123340546 123340546 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . HIP1R NM_003959 exon14 c.A1148G p.Q383R TCGCGCAGCTGAA . 133.0 21.0 142.0 0.0 . 68 . . Atlas-SNP TPTE2 93492 hgsc.bcm.edu hg19 13 20056675 20056675 + Silent SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TPTE2 NM_199254 exon5 c.A132G p.R44R GGAAAGTCGTTCT . 495.0 138.0 279.0 0.0 . 225 . . Atlas-SNP TPTE2 93492 hgsc.bcm.edu hg19 13 20067639 20067639 + Missense_Mutation SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TPTE2 NM_199254 exon3 c.C14T p.P5L GTCTGTGGACTAG . 35.0 11.0 26.0 0.0 . 225 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23909684 23909684 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SACS NM_014363 exon10 c.G8331T p.R2777S TTGTTTCCTTTTC . 50.0 13.0 32.0 0.0 . 871 . . Atlas-SNP ENOX1 55068 hgsc.bcm.edu hg19 13 43918692 43918692 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ENOX1 NM_017993 exon9 c.A1018G p.T340A TCCCAGTTAAGGC . 137.0 43.0 126.0 0.0 . 158 . . Atlas-SNP COG3 83548 hgsc.bcm.edu hg19 13 46067517 46067517 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . COG3 NM_031431 exon12 c.A1223T p.D408V TGTATGATGTCTT . 127.0 44.0 82.0 0.0 . 52 . . Atlas-SNP COG3 83548 hgsc.bcm.edu hg19 13 46104830 46104830 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . COG3 NM_031431 exon22 c.A2372G p.Q791R TTCAGCAAGTCTT . 73.0 5.0 53.0 0.0 . 52 . . Atlas-SNP DIAPH3 81624 hgsc.bcm.edu hg19 13 60348376 60348376 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DIAPH3 NM_001042517 exon27 c.G3266T p.R1089L CTCTGCCGAACAT . 301.0 18.0 195.0 0.0 . 139 . . Atlas-SNP RNF31 55072 hgsc.bcm.edu hg19 14 24617276 24617276 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . RNF31 NM_017999 exon2 c.G284A p.W95X GGTACTGGCGTGG . 47.0 15.0 44.0 0.0 . 95 . . Atlas-SNP PLEKHH1 57475 hgsc.bcm.edu hg19 14 68046545 68046545 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PLEKHH1 NM_020715 exon22 c.C3135A p.D1045E CACGGACGATCCC . 55.0 19.0 49.0 0.0 . 118 . . Atlas-SNP SERPINA10 51156 hgsc.bcm.edu hg19 14 94752462 94752462 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SERPINA10 NM_001100607 exon4 c.A1126C p.N376H GGAGATTTCTTCC . 83.0 24.0 60.0 0.0 . 83 . . Atlas-SNP INF2 64423 hgsc.bcm.edu hg19 14 105180664 105180664 + Silent SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . INF2 NM_022489 exon21 c.C3165A p.P1055P GACCCCCGGCCCT . 59.0 26.0 46.0 0.0 . 148 . . Atlas-SNP NPAP1 23742 hgsc.bcm.edu hg19 15 24923532 24923532 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . . NM_018958 exon1 c.T2518A p.F840I TCTACCTTTGTCT . 54.0 17.0 38.0 0.0 . . . . Atlas-SNP SPINT1 6692 hgsc.bcm.edu hg19 15 41136861 41136861 + Missense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SPINT1 NM_181642 exon2 c.C109T p.P37S GCCGGGCCACCGC . 114.0 39.0 146.0 0.0 . 28 . . Atlas-SNP PDIA3 2923 hgsc.bcm.edu hg19 15 44060746 44060746 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PDIA3 NM_005313 exon9 c.G1088T p.R363I TGAAGAGATACCT . 83.0 31.0 52.0 0.0 . 40 . . Atlas-SNP SEMA6D 80031 hgsc.bcm.edu hg19 15 48052603 48052603 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SEMA6D NM_153617 exon3 c.T212C p.I71T TTTATATTGCTGG . 95.0 4.0 54.0 0.0 . 322 . . Atlas-SNP RORA 6095 hgsc.bcm.edu hg19 15 60803529 60803529 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . RORA NM_134260 exon6 c.T815C p.I272T GGTTTGATTCCAT . 102.0 32.0 82.0 0.0 . 114 . . Atlas-SNP DENND4A 10260 hgsc.bcm.edu hg19 15 65962168 65962168 + Missense_Mutation SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DENND4A NM_001144823 exon27 c.C4733T p.S1578F AGACCAGAGGCTG . 104.0 30.0 67.0 0.0 . 217 . . Atlas-SNP CCDC33 80125 hgsc.bcm.edu hg19 15 74559069 74559069 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CCDC33 NM_025055 exon4 c.T370A p.Y124N TTGTCCTACAAAA . 95.0 26.0 64.0 0.0 . 160 . . Atlas-SNP TMC3 342125 hgsc.bcm.edu hg19 15 81635637 81635637 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TMC3 NM_001080532 exon15 c.A1697T p.Y566F TGGTTGTAGACTA . 112.0 37.0 51.0 0.0 . 112 . . Atlas-SNP CCNF 899 hgsc.bcm.edu hg19 16 2483037 2483037 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CCNF NM_001761 exon3 c.C247A p.P83T CTGTGGCCGTCTC . 49.0 11.0 50.0 0.0 . 110 . . Atlas-SNP GDE1 51573 hgsc.bcm.edu hg19 16 19514862 19514862 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . GDE1 NM_016641 exon6 c.A926C p.Y309S TCGTAGTAACTCT . 94.0 13.0 55.0 0.0 . 31 . . Atlas-SNP N4BP1 9683 hgsc.bcm.edu hg19 16 48596122 48596122 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . N4BP1 NM_153029 exon2 c.A432C p.K144N GTTCTCTTTATTT . 81.0 15.0 59.0 0.0 . 121 . . Atlas-SNP HEATR3 55027 hgsc.bcm.edu hg19 16 50100277 50100277 + Splice_Site SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . HEATR3 NM_182922 exon2 c.139-1G>T . TCCGCAGCTCCAG . 45.0 16.0 38.0 0.0 . 59 . . Atlas-SNP CHD9 80205 hgsc.bcm.edu hg19 16 53340154 53340154 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CHD9 NM_025134 exon32 c.A6625T p.T2209S GAAAGTACTACTC . 188.0 53.0 113.0 0.0 . 203 . . Atlas-SNP RPGRIP1L 23322 hgsc.bcm.edu hg19 16 53639514 53639514 + Silent SNP G G C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . RPGRIP1L NM_015272 exon26 c.C3714G p.T1238T GACCACGGTGAAG . 36.0 9.0 28.0 0.0 . 118 . . Atlas-SNP PSMB10 5699 hgsc.bcm.edu hg19 16 67969964 67969964 + Silent SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PSMB10 NM_002801 exon4 c.A285T p.T95T CATCCGTGTGGTC . 43.0 16.0 64.0 0.0 . 19 . . Atlas-SNP SF3B3 23450 hgsc.bcm.edu hg19 16 70597888 70597888 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SF3B3 NM_012426 exon18 c.A2398T p.I800F ATTATCATTGAAA . 103.0 14.0 84.0 0.0 . 99 . . Atlas-SNP ZNRF1 84937 hgsc.bcm.edu hg19 16 75033939 75033939 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNRF1 NM_032268 exon1 c.C370A p.L124M GCCTCGCTGGCGG . 61.0 24.0 72.0 0.0 . 6 . . Atlas-SNP KIAA0513 9764 hgsc.bcm.edu hg19 16 85112566 85112566 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . KIAA0513 NM_014732 exon8 c.G859T p.E287X AAGGGGGAGAAGA . 58.0 24.0 62.0 0.0 . 43 . . Atlas-SNP ZFPM1 161882 hgsc.bcm.edu hg19 16 88555560 88555560 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZFPM1 NM_153813 exon3 c.A267G p.P89P CGGGCCAGGTAAC . 52.0 14.0 52.0 0.0 . 32 . . Atlas-SNP MVD 4597 hgsc.bcm.edu hg19 16 88723903 88723903 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MVD NM_002461 exon4 c.T344C p.V115A TTGTTCACCGATG . 173.0 8.0 170.0 0.0 . 27 . . Atlas-SNP ANKRD11 29123 hgsc.bcm.edu hg19 16 89349878 89349878 + Silent SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ANKRD11 NM_001256183 exon9 c.A3072G p.K1024K TTCTGGTTTTGTC . 55.0 15.0 33.0 0.0 . 195 . . Atlas-SNP ASGR1 432 hgsc.bcm.edu hg19 17 7077382 7077382 + Missense_Mutation SNP A A C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ASGR1 NM_001671 exon8 c.T599G p.F200C TGGACAAATTTCT . 86.0 30.0 80.0 0.0 . 20 . . Atlas-SNP SLC2A4 6517 hgsc.bcm.edu hg19 17 7187920 7187920 + Missense_Mutation SNP C C G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe SLC2A4,caecum,carcinoma,0,1 SLC2A4 NM_001042 exon7 c.C844G p.R282G GGCAGCCGTACCC . 86.0 23.0 78.0 0.0 . 44 . . Atlas-SNP MYH10 4628 hgsc.bcm.edu hg19 17 8416885 8416885 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MYH10 NM_001256012 exon23 c.C2716A p.L906M CCTCCAGCTCTCC . 44.0 5.0 21.0 0.0 . 148 . . Atlas-SNP MYH3 4621 hgsc.bcm.edu hg19 17 10543714 10543714 + Silent SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MYH3 NM_002470 exon21 c.C2362A p.R788R GTGTCCGGGTGAT . 52.0 19.0 43.0 0.0 . 227 . . Atlas-SNP NT5M 56953 hgsc.bcm.edu hg19 17 17206959 17206959 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NT5M NM_020201 exon1 c.G95T p.G32V TGGCGGGAGGCCG . 60.0 21.0 56.0 0.0 . 17 . . Atlas-SNP MAP2K3 5606 hgsc.bcm.edu hg19 17 21203863 21203863 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MAP2K3 NM_145109 exon4 c.G172T p.E58X AACTTTGAGGTGG . 89.0 19.0 76.0 0.0 . 135 . . Atlas-SNP TADA2A 6871 hgsc.bcm.edu hg19 17 35804827 35804827 + Silent SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TADA2A NM_001488 exon8 c.G561A p.L187L GGACTTGAGAGAC . 105.0 32.0 87.0 0.0 . 91 . . Atlas-SNP HEXIM1 10614 hgsc.bcm.edu hg19 17 43226702 43226702 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . HEXIM1 NM_006460 exon1 c.T145A p.S49T TGGCAATCGAGAG . 193.0 54.0 197.0 0.0 . 25 . . Atlas-SNP MED13 9969 hgsc.bcm.edu hg19 17 60112898 60112898 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MED13 NM_005121 exon4 c.A542G p.N181S TGTTGGTTAATTT . 84.0 6.0 41.0 0.0 . 181 . . Atlas-SNP TACO1 51204 hgsc.bcm.edu hg19 17 61678596 61678596 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TACO1 NM_016360 exon1 c.T154C p.F52L CTGCACTTTACCG . 81.0 17.0 81.0 0.0 . 13 . . Atlas-SNP MRPS7 51081 hgsc.bcm.edu hg19 17 73258604 73258604 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MRPS7 NM_015971 exon2 c.A110G p.Y37C GCCGCTATAGTCC . 80.0 23.0 58.0 0.0 . 19 . . Atlas-SNP TRIM65 201292 hgsc.bcm.edu hg19 17 73892831 73892831 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TRIM65 NM_001256124 exon1 c.A188C p.N63T GCCACGTTGCGGC . 57.0 21.0 36.0 0.0 . 23 . . Atlas-SNP SPIRE1 56907 hgsc.bcm.edu hg19 18 12535487 12535487 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SPIRE1 NM_020148 exon4 c.G717T p.K239N CGCACTCTTAATT . 59.0 13.0 27.0 0.0 . 120 . . Atlas-SNP GREB1L 80000 hgsc.bcm.edu hg19 18 19098141 19098141 + Silent SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . GREB1L NM_001142966 exon31 c.T5418C p.H1806H CATCCATAACTTC . 101.0 6.0 89.0 0.0 . 69 . . Atlas-SNP MIB1 57534 hgsc.bcm.edu hg19 18 19437092 19437092 + Silent SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MIB1 NM_020774 exon19 c.C2667T p.N889N TCCAGACTGTGCT . 65.0 22.0 55.0 0.0 . 87 . . Atlas-SNP MALT1 10892 hgsc.bcm.edu hg19 18 56348515 56348515 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MALT1 NM_173844 exon2 c.A323G p.D108G TGAGTGATTTCCT . 100.0 26.0 79.0 0.0 . 55 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9049646 9049646 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MUC16 NM_024690 exon5 c.A31985T p.D10662V CTAGTATCTGTCC . 107.0 36.0 79.0 0.0 . 4315 . . Atlas-SNP KEAP1 9817 hgsc.bcm.edu hg19 19 10610240 10610240 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . KEAP1 NM_012289 exon2 c.A470G p.N157S GCACCGTTCATGA . 82.0 12.0 99.0 0.0 . 182 . . Atlas-SNP GADD45GIP1 90480 hgsc.bcm.edu hg19 19 13065097 13065097 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . GADD45GIP1 NM_052850 exon2 c.G594T p.K198N CTCCTTCTTCCGT . 104.0 5.0 96.0 0.0 . 11 . . Atlas-SNP CILP2 148113 hgsc.bcm.edu hg19 19 19655014 19655014 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CILP2 NM_153221 exon8 c.A1660T p.M554L AAGGCCATGCGGA . 50.0 15.0 63.0 0.0 . 84 . . Atlas-SNP LSR 51599 hgsc.bcm.edu hg19 19 35758146 35758146 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . LSR NM_205834 exon9 c.C1423A p.P475T CAGGAGCCCGCCA . 84.0 20.0 78.0 0.0 . 60 . . Atlas-SNP COX6B1 1340 hgsc.bcm.edu hg19 19 36142180 36142180 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . COX6B1 NM_001863 exon2 c.A35G p.Y12C AGAACTACAAGAC . 93.0 29.0 62.0 0.0 . 20 . . Atlas-SNP ZNF573 126231 hgsc.bcm.edu hg19 19 38229948 38229948 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF573 NM_001172690 exon5 c.T1443C p.T481T TGAGCCAGTACTA . 137.0 24.0 76.0 0.0 . 63 . . Atlas-SNP SPTBN4 57731 hgsc.bcm.edu hg19 19 40993612 40993612 + Missense_Mutation SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SPTBN4 NM_020971 exon3 c.G178A p.E60K GAGCGGGAAGCCG . 60.0 22.0 47.0 0.0 . 213 . . Atlas-SNP CEACAM3 1084 hgsc.bcm.edu hg19 19 42301605 42301605 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CEACAM3 NM_001815 exon2 c.A149T p.E50V GGAAGGAGGTGCT . 195.0 53.0 105.0 0.0 . 37 . . Atlas-SNP SMG9 56006 hgsc.bcm.edu hg19 19 44249035 44249035 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SMG9 NM_019108 exon6 c.A590G p.Y197C AACAGGTACTGTG . 121.0 26.0 72.0 0.0 . 39 . . Atlas-SNP ERCC2 2068 hgsc.bcm.edu hg19 19 45860629 45860629 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ERCC2 NM_000400 exon15 c.A1378G p.T460A ACAGTGTCTGTGG . 147.0 42.0 91.0 0.0 . 78 . . Atlas-SNP PRR12 57479 hgsc.bcm.edu hg19 19 50102580 50102580 + Missense_Mutation SNP G G C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PRR12 NM_020719 exon5 c.G3730C p.D1244H TCGGGTGATGCCA . 73.0 5.0 49.0 0.0 . 157 . . Atlas-SNP ZNF615 284370 hgsc.bcm.edu hg19 19 52496613 52496613 + Silent SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF615 NM_001199324 exon7 c.A1749G p.E583E GCCACATTCACTG . 75.0 18.0 47.0 0.0 . 111 . . Atlas-SNP ZNF766 90321 hgsc.bcm.edu hg19 19 52793977 52793977 + Silent SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF766 NM_001010851 exon4 c.T933C p.S311S TAGCAGTTCATAC . 167.0 33.0 90.0 0.0 . 45 . . Atlas-SNP ZNF528 84436 hgsc.bcm.edu hg19 19 52919622 52919622 + Nonsense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF528 NM_032423 exon7 c.C1517A p.S506X GCAGTTCAAACCT . 153.0 43.0 72.0 0.0 . 95 . . Atlas-SNP ZNF415 55786 hgsc.bcm.edu hg19 19 53613070 53613070 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF415 NM_018355 exon4 c.T228A p.H76Q TTTTTCATGTTGT . 122.0 30.0 72.0 0.0 . 68 . . Atlas-SNP ZNF347 84671 hgsc.bcm.edu hg19 19 53643694 53643694 + Missense_Mutation SNP C C A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF347 NM_001172675 exon5 c.G2390T p.G797V GGTTTCCCACACT . 191.0 43.0 80.0 0.0 . 87 . . Atlas-SNP ZNF761 388561 hgsc.bcm.edu hg19 19 53959293 53959293 + Missense_Mutation SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF761 NM_001008401 exon7 c.G1532A p.C511Y TCACATGCCATCA . 142.0 7.0 78.0 0.0 . 104 . . Atlas-SNP BRSK1 84446 hgsc.bcm.edu hg19 19 55798667 55798667 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . BRSK1 NM_032430 exon3 c.T317A p.L106X AATATTTGTAGGT . 93.0 22.0 42.0 0.0 . 192 . . Atlas-SNP NLRP4 147945 hgsc.bcm.edu hg19 19 56390306 56390306 + Missense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NLRP4 NM_134444 exon9 c.C2843T p.P948L GACACCCAGAGTG . 120.0 38.0 93.0 0.0 . 331 . . Atlas-SNP ZNF329 79673 hgsc.bcm.edu hg19 19 58639453 58639453 + Missense_Mutation SNP T T A rs201280634 by1000genomes;alternate_allele TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF329 NM_024620 exon4 c.A1418T p.H473L CTCTGGTGCTTGG . 127.0 28.0 50.0 0.0 . 70 . T|1.000;C|0.000 Atlas-SNP FAM110A 83541 hgsc.bcm.edu hg19 20 826010 826010 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . FAM110A NM_207121 exon2 c.A563T p.K188M GCTCCAAGTCGGA . 135.0 47.0 172.0 0.0 . 18 . . Atlas-SNP PLCB1 23236 hgsc.bcm.edu hg19 20 8608966 8608966 + Missense_Mutation SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . PLCB1 NM_015192 exon4 c.T272G p.L91R TTTTGGATGTGGG . 126.0 34.0 102.0 0.0 . 394 . . Atlas-SNP MGME1 92667 hgsc.bcm.edu hg19 20 17968898 17968898 + Missense_Mutation SNP C C T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . . NM_052865 exon4 c.C821T p.A274V TTGTGGCATACAT . 95.0 23.0 93.0 0.0 . . . . Atlas-SNP MATN4 8785 hgsc.bcm.edu hg19 20 43922619 43922619 + Missense_Mutation SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MATN4 NM_003833 exon9 c.C1616T p.P539L TCGCATGGGCTCC . 27.0 6.0 25.0 0.0 . 57 . . Atlas-SNP CSE1L 1434 hgsc.bcm.edu hg19 20 47695153 47695153 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CSE1L NM_001316 exon14 c.A1476G p.R492R TTTTAGAAATCAA . 55.0 16.0 26.0 0.0 . 83 . . Atlas-SNP BCAS1 8537 hgsc.bcm.edu hg19 20 52675210 52675210 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . BCAS1 NM_003657 exon2 c.T48A p.N16K TGGTTCATTCTCT . 49.0 17.0 35.0 0.0 . 77 . . Atlas-SNP CASS4 57091 hgsc.bcm.edu hg19 20 55027580 55027580 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CASS4 NM_020356 exon5 c.A1348T p.K450X CAGCACAAGGTGG . 66.0 18.0 55.0 0.0 . 121 . . Atlas-SNP DIDO1 11083 hgsc.bcm.edu hg19 20 61526440 61526440 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DIDO1 NM_080797 exon9 c.T2292C p.S764S CTCTTTAGATACA . 84.0 26.0 60.0 0.0 . 321 . . Atlas-SNP BACE2 25825 hgsc.bcm.edu hg19 21 42622773 42622773 + Missense_Mutation SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . BACE2 NM_138992 exon7 c.T1079C p.I360T TCTCCATCTACCT . 63.0 13.0 48.0 0.0 . 45 . . Atlas-SNP CCDC116 164592 hgsc.bcm.edu hg19 22 21988580 21988580 + Silent SNP A A G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CCDC116 NM_152612 exon3 c.A342G p.P114P GGACCCAGTGGAG . 53.0 13.0 46.0 0.0 . 56 . . Atlas-SNP TRIOBP 11078 hgsc.bcm.edu hg19 22 38120263 38120263 + Missense_Mutation SNP C C G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . TRIOBP NM_001039141 exon7 c.C1700G p.P567R CCTCTCCCAATAG . 295.0 28.0 250.0 0.0 . 262 . . Atlas-SNP CACNA1I 8911 hgsc.bcm.edu hg19 22 40059828 40059828 + Silent SNP G G A rs58500586 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CACNA1I NM_021096 exon19 c.G3579A p.Q1193Q GCCTCAGATCGAG . 51.0 15.0 66.0 0.0 . 264 . G|0.997;C|0.003 Atlas-SNP VCX3B 425054 hgsc.bcm.edu hg19 X 8434394 8434394 + Silent SNP G G A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . VCX3B NM_001001888 exon3 c.G711A p.E237E TCAGGAGAGCGAG . 272.0 26.0 212.0 0.0 . 34 . . Atlas-SNP VCX3B 425054 hgsc.bcm.edu hg19 X 8434395 8434395 + Missense_Mutation SNP A A T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . VCX3B NM_001001888 exon3 c.A712T p.S238C CAGGAGAGCGAGA . 272.0 26.0 212.0 0.0 . 34 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 31366711 31366711 + Missense_Mutation SNP T T G novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . DMD NM_004006 exon61 c.A9125C p.H3042P TCCCTGTGGGCTT . 245.0 161.0 125.0 0.0 . 2127 . . Atlas-SNP CXorf22 170063 hgsc.bcm.edu hg19 X 35989801 35989801 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CXorf22 NM_152632 exon12 c.T2069A p.L690Q AGGAGCTGTCTTC . 192.0 68.0 121.0 0.0 . 272 . . Atlas-SNP ARMCX2 9823 hgsc.bcm.edu hg19 X 100912386 100912386 + Silent SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ARMCX2 NM_014782 exon5 c.C189A p.I63I AAGGTCGATTGTG . 40.0 13.0 42.0 0.0 . 75 . . Atlas-SNP WDR44 54521 hgsc.bcm.edu hg19 X 117570751 117570751 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . WDR44 NM_001184965 exon14 c.T1938A p.H646Q TCAACATATAGAT . 106.0 66.0 65.0 0.0 . 188 . . Atlas-SNP TMEM255A 55026 hgsc.bcm.edu hg19 X 119410802 119410802 + Missense_Mutation SNP T T A novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . . NM_017938 exon8 c.A685T p.N229Y CAATGTTGAGGAT . 88.0 58.0 68.0 0.0 . . . . Atlas-SNP ZNF75D 7626 hgsc.bcm.edu hg19 X 134427746 134427746 + Missense_Mutation SNP G G T novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF75D NM_007131 exon2 c.C321A p.N107K CACCCAGTTCTGG . 77.0 14.0 38.0 0.0 . 65 . . Atlas-SNP ND3 0 hgsc.bcm.edu hg19 MT 10253 10253 + Silent SNP T T C novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . . ENST00000361227 exon1 c.T195C p.F65F ATTATTTGATCTA . 85.0 45.0 24.0 0.0 . . . . Atlas-SNP ZNF583 147949 hgsc.bcm.edu hg19 19 56935118 56935153 + In_Frame_Del DEL GTGGATACCTAATTGTACATCAGAGAATTCATACTG GTGGATACCTAATTGTACATCAGAGAATTCATACTG - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 GTGGATACCTAATTGTACATCAGAGAATTCATACTG GTGGATACCTAATTGTACATCAGAGAATTCATACTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF583 NM_152478 exon5 c.1090_1125del p.364_375del . . 126.0 18.0 55.0 0.0 . 83 . . Atlas-INDEL UGT2B4 7363 hgsc.bcm.edu hg19 4 70361213 70361216 + Frame_Shift_Del DEL GTAT GTAT - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 GTAT GTAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . UGT2B4 NM_021139 exon1 c.365_368del p.122_123del . . 119.0 42.0 89.0 0.0 . 105 . . Atlas-INDEL MAN2B2 23324 hgsc.bcm.edu hg19 4 6596347 6596354 + Frame_Shift_Del DEL GCTCGGTG GCTCGGTG - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 GCTCGGTG GCTCGGTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MAN2B2 NM_015274 exon7 c.944_951del p.315_317del . . 51.0 14.0 46.0 0.0 . 80 . . Atlas-INDEL SLC30A1 7779 hgsc.bcm.edu hg19 1 211748979 211748980 + Frame_Shift_Ins INS - - CCTAC novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SLC30A1 NM_021194 exon2 c.1275_1276insGTAGG p.G425_S426delinsGX . . 84.0 19.0 71.0 0.0 . 27 . . Atlas-INDEL UTRN 7402 hgsc.bcm.edu hg19 6 144869853 144869874 + Frame_Shift_Del DEL ATTTCAATTCCTGCTGATCTTG ATTTCAATTCCTGCTGATCTTG - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 ATTTCAATTCCTGCTGATCTTG ATTTCAATTCCTGCTGATCTTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . UTRN NM_007124 exon46 c.6672_6693del p.2224_2231del . . 102.0 12.0 73.0 0.0 . 327 . . Atlas-INDEL FNDC5 252995 hgsc.bcm.edu hg19 1 33330349 33330349 + Frame_Shift_Del DEL T T - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . FNDC5 NM_153756 exon5 c.325delC p.P109fs . . 73.0 22.0 60.0 0.0 . 16 . . Atlas-INDEL SPECC1L 23384 hgsc.bcm.edu hg19 22 24698203 24698203 + Frame_Shift_Del DEL A A - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . SPECC1L NM_001145468 exon2 c.3delG p.M1fs . . 215.0 66.0 147.0 0.0 . 85 . . Atlas-INDEL GPHN 10243 hgsc.bcm.edu hg19 14 67291253 67291253 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . GPHN NM_001024218 exon4 c.262delA p.T88fs . . 103.0 25.0 77.0 0.0 . 79 . . Atlas-INDEL CXorf36 79742 hgsc.bcm.edu hg19 X 45010995 45010995 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . CXorf36 NM_176819 exon5 c.1205delC p.A402fs . . 76.0 54.0 69.0 0.0 . 53 . . Atlas-INDEL ZNF510 22869 hgsc.bcm.edu hg19 9 99521444 99521447 + Frame_Shift_Del DEL TTTT TTTT - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 TTTT TTTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ZNF510 NM_014930 exon6 c.1666_1669del p.556_557del . . 88.0 19.0 78.0 0.0 . 59 . . Atlas-INDEL MBOAT7 79143 hgsc.bcm.edu hg19 19 54677808 54677808 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . MBOAT7 NM_024298 exon8 c.1350delC p.G450fs . . 129.0 16.0 83.0 0.0 . 37 . . Atlas-INDEL NLGN1 22871 hgsc.bcm.edu hg19 3 173997093 173997094 + In_Frame_Ins INS - - ACC novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . NLGN1 NM_014932 exon6 c.1302_1303insACC p.E434delinsET . . 142.0 33.0 81.0 0.0 . 209 . . Atlas-INDEL IMPA1 3612 hgsc.bcm.edu hg19 8 82598039 82598046 + Frame_Shift_Del DEL CTGTTTCT CTGTTTCT - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 CTGTTTCT CTGTTTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . IMPA1 NM_001144878 exon2 c.106_113del p.36_38del . . 224.0 59.0 186.0 0.0 . 46 . . Atlas-INDEL COL6A2 1292 hgsc.bcm.edu hg19 21 47549212 47549215 + Frame_Shift_Del DEL TAAA TAAA - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 TAAA TAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . COL6A2 NM_058174 exon28 c.2563_2566del p.855_856del . . 134.0 41.0 147.0 0.0 . 351 . . Atlas-INDEL ANO5 203859 hgsc.bcm.edu hg19 11 22247597 22247597 + Frame_Shift_Del DEL G G - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe . ANO5 NM_213599 exon6 c.361delA p.R121fs . . 326.0 79.0 228.0 0.0 . 162 . . Atlas-INDEL GRIK1 2897 hgsc.bcm.edu hg19 21 30927495 30927497 + In_Frame_Del DEL CAC CAC - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 CAC CAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe GRIK1_ENST00000399907,NS,carcinoma,0,2 GRIK1 NM_000830 exon16 c.2484_2486del p.828_829del . . 58.0 18.0 56.0 0.0 . 293 . . Atlas-INDEL HGF 3082 hgsc.bcm.edu hg19 7 81350161 81350197 + Frame_Shift_Del DEL AATCTAGACATAAAATATACAGAAATAAGTCCAATGA AATCTAGACATAAAATATACAGAAATAAGTCCAATGA - novel TCGA-DD-AAE7-01A-11D-A40R-10 TCGA-DD-AAE7-10A-01D-A40U-10 AATCTAGACATAAAATATACAGAAATAAGTCCAATGA AATCTAGACATAAAATATACAGAAATAAGTCCAATGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5b7fc7c0-18c0-4c05-9a0a-5493e05b850c b24da751-d43f-49c4-80e4-ac9d237e5bbe HGF,colon,carcinoma,0,1 HGF NM_000601 exon10 c.1169_1172del p.390_391del . . 76.0 18.0 44.0 0.0 . 171 . . Atlas-INDEL