Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm FBXO42 54455 hgsc.bcm.edu hg19 1 16579610 16579610 + Missense_Mutation SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . FBXO42 NM_018994 exon8 c.G902A p.G301E CCACACCCTCCGA . 316.0 16.0 173.0 0.0 . 53 . . Atlas-SNP AKR7A3 22977 hgsc.bcm.edu hg19 1 19612450 19612450 + Missense_Mutation SNP C C A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . AKR7A3 NM_012067 exon3 c.G439T p.A147S CCCAGGCTGCATA . 180.0 68.0 135.0 0.0 . 30 . . Atlas-SNP CHRNB2 1141 hgsc.bcm.edu hg19 1 154548297 154548297 + Silent SNP T T C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . CHRNB2 NM_000748 exon6 c.T1398C p.F466F GATCTTTGTCTTT . 120.0 33.0 61.0 0.0 . 74 . . Atlas-SNP AXDND1 126859 hgsc.bcm.edu hg19 1 179504037 179504037 + Missense_Mutation SNP G G C rs6425573 bycluster;by2hit2allele;byhapmap TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . AXDND1 NM_144696 exon25 c.G2971C p.E991Q GAAGAAGAACAAC . 583.0 31.0 332.0 0.0 . 142 . G|1.000;|0.000 Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240371477 240371477 + Missense_Mutation SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . FMN2 NM_020066 exon5 c.C3365T p.P1122L CTCCTCCCCCTCT . 136.0 42.0 87.0 0.0 . 451 . . Atlas-SNP CHML 1122 hgsc.bcm.edu hg19 1 241798135 241798135 + Missense_Mutation SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . CHML NM_001821 exon1 c.G934A p.D312N ATTCATCAGGATG . 197.0 78.0 109.0 0.0 . 82 . . Atlas-SNP PSME4 23198 hgsc.bcm.edu hg19 2 54163923 54163923 + Missense_Mutation SNP T T A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . PSME4 NM_014614 exon6 c.A737T p.Q246L AGATTTTGCACTG . 646.0 249.0 469.0 0.0 . 247 . . Atlas-SNP RFX8 731220 hgsc.bcm.edu hg19 2 102018902 102018902 + Missense_Mutation SNP T T C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . RFX8 NM_001145664 exon11 c.A1241G p.N414S ACCTTATTGCCCA . 119.0 8.0 86.0 0.0 . 16 . . Atlas-SNP ARHGEF4 50649 hgsc.bcm.edu hg19 2 131785570 131785570 + Silent SNP C C T rs372979735 TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b ARHGEF4,colon,carcinoma,0,2 ARHGEF4 NM_032995 exon5 c.C480T p.S160S GGGGAGCGAGGAG . 121.0 76.0 144.0 0.0 . 89 . . Atlas-SNP NCL 4691 hgsc.bcm.edu hg19 2 232320222 232320222 + Missense_Mutation SNP C C A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . NCL NM_005381 exon13 c.G1946T p.G649V CCTTCACCCTTAG . 95.0 35.0 66.0 0.0 . 80 . . Atlas-SNP SLC22A14 9389 hgsc.bcm.edu hg19 3 38354541 38354541 + Silent SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . SLC22A14 NM_004803 exon5 c.G996A p.E332E GAAGGAGGCCAAG . 163.0 60.0 94.0 0.0 . 64 . . Atlas-SNP CYP8B1 1582 hgsc.bcm.edu hg19 3 42917206 42917206 + Missense_Mutation SNP G G T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b CYP8B1,middle_lobe,carcinoma,0,1 CYP8B1 NM_004391 exon1 c.C103A p.L35M TGTCCAGAGGGGG . 113.0 83.0 52.0 0.0 . 59 . . Atlas-SNP DHX30 22907 hgsc.bcm.edu hg19 3 47882619 47882619 + Missense_Mutation SNP T T G novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . DHX30 NM_138615 exon7 c.T619G p.F207V ACCGACTTCTTGT . 173.0 67.0 95.0 0.0 . 101 . . Atlas-SNP STAB1 23166 hgsc.bcm.edu hg19 3 52535661 52535661 + Missense_Mutation SNP G G C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . STAB1 NM_015136 exon3 c.G223C p.V75L TACGAAGTACAGC . 186.0 57.0 124.0 0.0 . 178 . . Atlas-SNP HGFAC 3083 hgsc.bcm.edu hg19 4 3446146 3446146 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . HGFAC NM_001528 exon6 c.G707A p.W236X GGACCTGGTGCGA . 215.0 75.0 150.0 0.0 . 69 . . Atlas-SNP KIT 3815 hgsc.bcm.edu hg19 4 55573355 55573355 + Silent SNP A A T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . KIT NM_000222 exon6 c.A1017T p.A339A TGAAGCATTCCCC . 347.0 141.0 237.0 0.0 . 7396 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155411569 155411569 + Silent SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . DCHS2 NM_001142552 exon1 c.C939T p.A313A GACCTCGGCGCCC . 52.0 21.0 32.0 0.0 . 594 . . Atlas-SNP C5orf42 65250 hgsc.bcm.edu hg19 5 37224832 37224832 + Missense_Mutation SNP G G T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . C5orf42 NM_023073 exon13 c.C2302A p.L768I TCCAGAGAATAAG . 137.0 15.0 123.0 0.0 . 422 . . Atlas-SNP RICTOR 253260 hgsc.bcm.edu hg19 5 39074458 39074458 + Missense_Mutation SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . RICTOR NM_152756 exon1 c.C22T p.R8C GAGAGCGGCCGCG . 165.0 62.0 105.0 0.0 . 182 . . Atlas-SNP PCDHA8 56140 hgsc.bcm.edu hg19 5 140222700 140222700 + Silent SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b PCDHA8_ENST00000531613,NS,carcinoma,0,2 PCDHA8 NM_031856 exon1 c.C1794T p.D598D AGTGGACGCCGAC . 137.0 48.0 84.0 0.0 . 366 . . Atlas-SNP ARAP3 64411 hgsc.bcm.edu hg19 5 141036195 141036195 + Missense_Mutation SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ARAP3 NM_022481 exon27 c.G3665A p.R1222H CTCTCACGTCGGA . 209.0 67.0 114.0 0.0 . 139 . . Atlas-SNP OR10C1 442194 hgsc.bcm.edu hg19 6 29408146 29408146 + Silent SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . OR10C1 NM_013941 exon1 c.C354T p.A118A CATGGCCTATGAC . 75.0 34.0 61.0 0.0 . 58 . . Atlas-SNP PTPRK 5796 hgsc.bcm.edu hg19 6 128388773 128388773 + Missense_Mutation SNP G G C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b PTPRK,NS,neuroblastoma,0,1 PTPRK NM_001135648 exon12 c.C2048G p.A683G AACGGGGCAGGCT . 108.0 38.0 85.0 0.0 . 330 . . Atlas-SNP TBP 6908 hgsc.bcm.edu hg19 6 170871004 170871004 + Silent SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . TBP NM_003194 exon3 c.G180A p.Q60Q GCAGCAGCAACAA . 67.0 5.0 54.0 0.0 . 58 . . Atlas-SNP PHTF2 57157 hgsc.bcm.edu hg19 7 77558460 77558460 + Missense_Mutation SNP G G T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . PHTF2 NM_001127357 exon10 c.G1052T p.R351L GCTCTCGCTGTTC . 182.0 73.0 140.0 0.0 . 104 . . Atlas-SNP WDR60 55112 hgsc.bcm.edu hg19 7 158734820 158734820 + Nonsense_Mutation SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . WDR60 NM_018051 exon24 c.C2983T p.Q995X GCCAAACAGCAGG . 25.0 17.0 34.0 0.0 . 94 . . Atlas-SNP ADAM7 8756 hgsc.bcm.edu hg19 8 24339683 24339683 + Missense_Mutation SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ADAM7 NM_003817 exon9 c.C734T p.T245M ATGTGACGTTGGT . 160.0 28.0 140.0 0.0 . 165 . . Atlas-SNP CPA6 57094 hgsc.bcm.edu hg19 8 68536486 68536486 + Silent SNP A A T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . CPA6 NM_020361 exon2 c.T117A p.G39G TTTATCACTACAA . 105.0 34.0 81.0 0.0 . 69 . . Atlas-SNP AARD 441376 hgsc.bcm.edu hg19 8 117954908 117954908 + Missense_Mutation SNP A A T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . . NM_001025357 exon2 c.A436T p.S146C TCCCAAAGCCCAA . 137.0 10.0 81.0 0.0 . . . . Atlas-SNP TRPM6 140803 hgsc.bcm.edu hg19 9 77362825 77362825 + Missense_Mutation SNP T T C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . TRPM6 NM_017662 exon31 c.A5063G p.K1688R GAACTTTTCAGCC . 76.0 30.0 39.0 0.0 . 377 . . Atlas-SNP SKIDA1 387640 hgsc.bcm.edu hg19 10 21805720 21805720 + Silent SNP A A G novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . . NM_207371 exon4 c.T1032C p.H344H GTGGTGATGGTGG . 62.0 5.0 28.0 0.0 . . . . Atlas-SNP GJD4 219770 hgsc.bcm.edu hg19 10 35897262 35897262 + Missense_Mutation SNP G G C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . GJD4 NM_153368 exon2 c.G821C p.G274A GGGAGGGGGCTGG . 56.0 19.0 49.0 0.0 . 38 . . Atlas-SNP A1CF 29974 hgsc.bcm.edu hg19 10 52573658 52573658 + Missense_Mutation SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b A1CF,NS,carcinoma,0,1 A1CF NM_001198819 exon12 c.C1330T p.P444S TGACAGGATTCAT . 154.0 52.0 117.0 0.0 . 190 . . Atlas-SNP PRDX3 10935 hgsc.bcm.edu hg19 10 120938299 120938299 + Missense_Mutation SNP C C G novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . PRDX3 NM_006793 exon1 c.G4C p.A2P CAGCCGCCATCTT . 162.0 60.0 117.0 0.0 . 15 . . Atlas-SNP GPR123 84435 hgsc.bcm.edu hg19 10 134941950 134941950 + Silent SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . GPR123 NM_001083909 exon7 c.G618A p.G206G CCCAGGGCGCAGG . 113.0 47.0 70.0 0.0 . 118 . . Atlas-SNP ACP2 53 hgsc.bcm.edu hg19 11 47267056 47267056 + Missense_Mutation SNP G G C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ACP2 NM_001610 exon5 c.C518G p.P173R TACTCTGGTGTCT . 162.0 33.0 100.0 0.0 . 36 . . Atlas-SNP TMEM179B 374395 hgsc.bcm.edu hg19 11 62554934 62554934 + Missense_Mutation SNP C C A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . TMEM179B NM_199337 exon1 c.C31A p.L11I GTCGAGCTTGCGC . 35.0 12.0 14.0 0.0 . 13 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105842662 105842662 + Silent SNP T T A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . GRIA4 NM_000829 exon15 c.T2316A p.V772V TGCCGTTTTGAAA . 205.0 78.0 143.0 0.0 . 380 . . Atlas-SNP ALX1 8092 hgsc.bcm.edu hg19 12 85695157 85695157 + Silent SNP T T C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ALX1 NM_006982 exon4 c.T885C p.F295F TGCATTTGAAACA . 138.0 55.0 128.0 0.0 . 61 . . Atlas-SNP ZNF140 7699 hgsc.bcm.edu hg19 12 133682847 133682847 + Silent SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ZNF140 NM_003440 exon5 c.G984A p.P328P AACCCCGTATGAA . 154.0 78.0 115.0 0.0 . 18 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 36242504 36242504 + Splice_Site SNP G G T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . NBEA NM_015678 exon57 c.8599-1G>T . TCTGAAGGCCATT . 68.0 35.0 82.0 0.0 . 340 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 36242505 36242505 + Missense_Mutation SNP G G T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . NBEA NM_015678 exon57 c.G8599T p.A2867S CTGAAGGCCATTC . 67.0 34.0 83.0 0.0 . 340 . . Atlas-SNP SLC10A2 6555 hgsc.bcm.edu hg19 13 103718590 103718590 + Missense_Mutation SNP G G T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . SLC10A2 NM_000452 exon1 c.C10A p.P4T TGTTCGGATCATT . 65.0 24.0 48.0 0.0 . 67 . . Atlas-SNP SEC23A 10484 hgsc.bcm.edu hg19 14 39517887 39517887 + Missense_Mutation SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . SEC23A NM_006364 exon15 c.G1706A p.R569K GAAAATCTGAAGG . 99.0 37.0 89.0 0.0 . 73 . . Atlas-SNP MIA2 117153 hgsc.bcm.edu hg19 14 39716435 39716435 + Silent SNP T T A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . MIA2 NM_054024 exon4 c.T657A p.A219A TTCAGCTGTGTCT . 258.0 107.0 171.0 0.0 . 82 . . Atlas-SNP ZBTB25 7597 hgsc.bcm.edu hg19 14 64954457 64954457 + Silent SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ZBTB25 NM_006977 exon3 c.C492T p.D164D GGGGTGGTCACCC . 156.0 26.0 121.0 0.0 . 27 . . Atlas-SNP DAPK2 23604 hgsc.bcm.edu hg19 15 64204312 64204312 + Missense_Mutation SNP A A T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . DAPK2 NM_014326 exon10 c.T943A p.W315R CCTTCCACCGCCT . 134.0 45.0 79.0 0.0 . 31 . . Atlas-SNP ABCC6 368 hgsc.bcm.edu hg19 16 16248764 16248764 + Missense_Mutation SNP T T G novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ABCC6 NM_001171 exon28 c.A4007C p.H1336P AGTGTGTGCAGCC . 189.0 53.0 99.0 0.0 . 110 . . Atlas-SNP ABCC6 368 hgsc.bcm.edu hg19 16 16255355 16255355 + Silent SNP C C A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ABCC6 NM_001171 exon25 c.G3573T p.V1191V GCTCAGCACAGCA . 275.0 136.0 127.0 0.0 . 110 . . Atlas-SNP ABCC6 368 hgsc.bcm.edu hg19 16 16255356 16255356 + Missense_Mutation SNP A A C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ABCC6 NM_001171 exon25 c.T3572G p.V1191G CTCAGCACAGCAC . 274.0 134.0 128.0 0.0 . 110 . . Atlas-SNP KATNB1 10300 hgsc.bcm.edu hg19 16 57790767 57790767 + Missense_Mutation SNP T T G novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . KATNB1 NM_005886 exon20 c.T1877G p.I626S AGAGCATCAGCGG . 132.0 34.0 66.0 0.0 . 35 . . Atlas-SNP HYDIN 54768 hgsc.bcm.edu hg19 16 70954810 70954810 + Missense_Mutation SNP G G A rs367546874 TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . HYDIN NM_001270974 exon46 c.C7469T p.A2490V TGGGGCGCTTCCT . 41.0 16.0 31.0 0.0 . 788 . . Atlas-SNP METTL16 79066 hgsc.bcm.edu hg19 17 2380980 2380980 + Missense_Mutation SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . METTL16 NM_024086 exon3 c.G328A p.G110S ATATACCTATGTC . 169.0 7.0 129.0 0.0 . 75 . . Atlas-SNP LPO 4025 hgsc.bcm.edu hg19 17 56344913 56344913 + Missense_Mutation SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . LPO NM_006151 exon12 c.G1897A p.G633S CTCTTGGGCAAGC . 124.0 49.0 71.0 0.0 . 73 . . Atlas-SNP EVPL 2125 hgsc.bcm.edu hg19 17 74005570 74005570 + Missense_Mutation SNP T T A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . EVPL NM_001988 exon22 c.A3716T p.E1239V AGGACCTCCAGGT . 79.0 9.0 36.0 0.0 . 155 . . Atlas-SNP TSHZ1 10194 hgsc.bcm.edu hg19 18 73000060 73000060 + Silent SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . TSHZ1 NM_005786 exon2 c.C2563T p.L855L CTCATCCTGCAGG . 66.0 21.0 46.0 0.0 . 104 . . Atlas-SNP ZNF516 9658 hgsc.bcm.edu hg19 18 74154504 74154504 + Missense_Mutation SNP C C A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ZNF516 NM_014643 exon3 c.G507T p.E169D CTTGGCCTCCCCC . 37.0 16.0 19.0 0.0 . 102 . . Atlas-SNP HMHA1 23526 hgsc.bcm.edu hg19 19 1080975 1080975 + Missense_Mutation SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . HMHA1 NM_001258328 exon17 c.G2150A p.R717H CGGCCCGTACTCA . 203.0 48.0 121.0 0.0 . 78 . . Atlas-SNP NOTCH3 4854 hgsc.bcm.edu hg19 19 15291624 15291624 + Missense_Mutation SNP A A C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . NOTCH3 NM_000435 exon19 c.T3010G p.C1004G GGCTGCACCAATC . 74.0 33.0 64.0 0.0 . 340 . . Atlas-SNP ZFP82 284406 hgsc.bcm.edu hg19 19 36884752 36884752 + Missense_Mutation SNP G G T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ZFP82 NM_133466 exon5 c.C490A p.H164N CAAAATGAAGTCT . 145.0 47.0 121.0 0.0 . 71 . . Atlas-SNP SARS2 54938 hgsc.bcm.edu hg19 19 39421215 39421215 + Silent SNP T T C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . SARS2 NM_001145901 exon1 c.A162G p.A54A AGGGAGTGCGCTG . 80.0 30.0 46.0 0.0 . 33 . . Atlas-SNP SAMD4B 55095 hgsc.bcm.edu hg19 19 39867144 39867144 + Silent SNP C C T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . SAMD4B NM_018028 exon8 c.C975T p.Y325Y GAGCTACGAGGAG . 74.0 28.0 47.0 0.0 . 48 . . Atlas-SNP IRF2BP1 26145 hgsc.bcm.edu hg19 19 46388496 46388496 + Silent SNP C C A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . IRF2BP1 NM_015649 exon1 c.G537T p.L179L CAGCGTCAGGCCT . 62.0 28.0 35.0 0.0 . 23 . . Atlas-SNP CD93 22918 hgsc.bcm.edu hg19 20 23066284 23066284 + Missense_Mutation SNP G G T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . CD93 NM_012072 exon1 c.C546A p.F182L GAAGCTGAACTTG . 79.0 31.0 49.0 0.0 . 84 . . Atlas-SNP ACTR5 79913 hgsc.bcm.edu hg19 20 37378813 37378813 + Nonsense_Mutation SNP C C A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ACTR5 NM_024855 exon2 c.C536A p.S179X AGAACTCGATGTG . 192.0 77.0 122.0 0.0 . 44 . . Atlas-SNP GPR143 4935 hgsc.bcm.edu hg19 X 9709456 9709456 + Nonsense_Mutation SNP A A C novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . GPR143 NM_000273 exon7 c.T807G p.Y269X CTCAAGATAGAAT . 601.0 228.0 473.0 0.0 . 37 . . Atlas-SNP ZC3H12B 340554 hgsc.bcm.edu hg19 X 64722582 64722582 + Silent SNP T T A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ZC3H12B NM_001010888 exon5 c.T2004A p.T668T ATCAACTGGAACA . 152.0 14.0 92.0 0.0 . 144 . . Atlas-SNP ZC3H12B 340554 hgsc.bcm.edu hg19 X 64722584 64722584 + Missense_Mutation SNP G G A novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . ZC3H12B NM_001010888 exon5 c.G2006A p.G669E CAACTGGAACACG . 151.0 14.0 94.0 0.0 . 144 . . Atlas-SNP MAZ 4150 hgsc.bcm.edu hg19 16 29821424 29821444 + In_Frame_Del DEL GCGGCAGCGGCAGCGGCGGCA GCGGCAGCGGCAGCGGCGGCA - rs370462022 alternate_allele TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 GCGGCAGCGGCAGCGGCGGCA GCGGCAGCGGCAGCGGCGGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . MAZ NM_002383 exon5 c.1305_1325del p.435_442del . . 141.0 44.0 66.0 0.0 . 48 . . Atlas-INDEL PDCD6IP 10015 hgsc.bcm.edu hg19 3 33866810 33866811 + Frame_Shift_Ins INS - - T novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . PDCD6IP NM_001256192 exon5 c.594_595insT p.V198fs . . 174.0 11.0 107.0 0.0 . 62 . . Atlas-INDEL CC2D2A 57545 hgsc.bcm.edu hg19 4 15517558 15517559 + Frame_Shift_Ins INS - - G novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b CC2D2A,caecum,carcinoma,0,1 CC2D2A NM_001080522 exon11 c.948_949insG p.T316fs . . 146.0 53.0 106.0 0.0 . 158 . . Atlas-INDEL AHDC1 27245 hgsc.bcm.edu hg19 1 27878204 27878206 + In_Frame_Del DEL ACT ACT - novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 ACT ACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . AHDC1 NM_001029882 exon6 c.422_424del p.141_142del . . 173.0 48.0 123.0 0.0 . 98 . . Atlas-INDEL KRTAP10-3 386682 hgsc.bcm.edu hg19 21 45978509 45978509 + Frame_Shift_Del DEL G G - novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . KRTAP10-3 NM_198696 exon1 c.91delT p.C31fs . . 79.0 29.0 39.0 0.0 . 17 . . Atlas-INDEL CAMTA1 23261 hgsc.bcm.edu hg19 1 7725035 7725036 + Frame_Shift_Del DEL GC GC - novel TCGA-DD-AAE4-01A-11D-A40R-10 TCGA-DD-AAE4-10A-01D-A40U-10 GC GC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ef673fe7-a934-4041-8258-a4af537977c6 ff5a3218-ca2c-4eac-a8cb-c88524c95f7b . CAMTA1 NM_015215 exon9 c.2427_2428del p.809_810del . . 149.0 48.0 104.0 0.0 . 226 . . Atlas-INDEL