Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CALML6 163688 hgsc.bcm.edu hg19 1 1848609 1848609 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CALML6 NM_138705 exon6 c.G523T p.E175X ACGGGGGAGTCCT . 82.0 35.0 89.0 0.0 . 18 . . Atlas-SNP KIF1B 23095 hgsc.bcm.edu hg19 1 10316355 10316355 + Missense_Mutation SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . KIF1B NM_183416 exon3 c.G157A p.D53N AGCTTCGACTATT . 64.0 9.0 50.0 0.0 . 242 . . Atlas-SNP FAM46B 115572 hgsc.bcm.edu hg19 1 27333377 27333377 + Silent SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . FAM46B NM_052943 exon2 c.C336T p.S112S CACGTGGCTGGCA . 112.0 51.0 84.0 0.0 . 44 . . Atlas-SNP EIF2B3 8891 hgsc.bcm.edu hg19 1 45345676 45345676 + Silent SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . EIF2B3 NM_020365 exon8 c.C789T p.I263I ACTGTAGATATCT . 124.0 49.0 117.0 0.0 . 43 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103496781 103496781 + Missense_Mutation SNP A A G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a .,2 COL11A1 NM_001854 exon5 c.T671C p.L224S GTGATCAAAAACT . 25.0 7.0 46.0 0.0 . 972 . . Atlas-SNP CRB1 23418 hgsc.bcm.edu hg19 1 197313448 197313448 + Silent SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CRB1 NM_001257966 exon3 c.C690T p.S230S TTGGTCCCAGCCT . 80.0 52.0 126.0 0.0 . 284 . . Atlas-SNP WNT9A 7483 hgsc.bcm.edu hg19 1 228111870 228111870 + Missense_Mutation SNP A A C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . WNT9A NM_003395 exon3 c.T584G p.V195G AAGTCCACACGGG . 197.0 73.0 185.0 0.0 . 39 . . Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240256917 240256917 + Missense_Mutation SNP T T A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . FMN2 NM_020066 exon1 c.T1508A p.L503Q ACCTGCTGGAGCG . 39.0 4.0 41.0 0.0 . 451 . . Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240371332 240371332 + Missense_Mutation SNP A A T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . FMN2 NM_020066 exon5 c.A3220T p.I1074L GCGGGCATACCCC . 143.0 28.0 122.0 0.0 . 451 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1893081 1893081 + Missense_Mutation SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . MYT1L NM_015025 exon16 c.G2446T p.D816Y GCAAGTCCCAGCA . 52.0 23.0 55.0 0.0 . 241 . . Atlas-SNP SCN5A 6331 hgsc.bcm.edu hg19 3 38651412 38651412 + Missense_Mutation SNP C C G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . SCN5A NM_001160160 exon7 c.G747C p.K249N AGCCAGCTTCTTC . 139.0 40.0 144.0 0.0 . 634 . . Atlas-SNP MCM2 4171 hgsc.bcm.edu hg19 3 127338035 127338035 + Missense_Mutation SNP G G T rs2307313 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . MCM2 NM_004526 exon13 c.G2179T p.A727S ATCTACGCCAAGG . 168.0 74.0 168.0 0.0 . 79 . G|0.994;A|0.006 Atlas-SNP PRR23A 729627 hgsc.bcm.edu hg19 3 138724398 138724398 + Missense_Mutation SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . PRR23A NM_001134659 exon1 c.C713T p.P238L ACGCGCGGAGAGG . 191.0 11.0 158.0 0.0 . 35 . . Atlas-SNP GYG1 2992 hgsc.bcm.edu hg19 3 148714621 148714621 + Silent SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . GYG1 NM_004130 exon4 c.C411T p.F137F AGTCTTCGTTTAT . 83.0 5.0 69.0 0.0 . 29 . . Atlas-SNP IGSF10 285313 hgsc.bcm.edu hg19 3 151161667 151161667 + Missense_Mutation SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a IGSF10,NS,carcinoma,0,1 IGSF10 NM_178822 exon5 c.G5068A p.D1690N ATAAATCAAGTCC . 104.0 34.0 93.0 0.0 . 279 . . Atlas-SNP CC2D2A 57545 hgsc.bcm.edu hg19 4 15482406 15482406 + Missense_Mutation SNP C C G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CC2D2A NM_020785 exon6 c.C308G p.A103G GAGGAGCCCAAGA . 347.0 119.0 292.0 0.0 . 158 . . Atlas-SNP TBC1D1 23216 hgsc.bcm.edu hg19 4 38055878 38055878 + Missense_Mutation SNP C C T rs140253816 bycluster TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . TBC1D1 NM_001253912 exon14 c.C2251T p.R751W AAGACCCGGAGGC . 99.0 31.0 92.0 0.0 . 94 . C|1.000;G|0.000 Atlas-SNP ADAD1 132612 hgsc.bcm.edu hg19 4 123301299 123301299 + Silent SNP A A T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . ADAD1 NM_139243 exon3 c.A75T p.P25P CCTGCCAGTTCAA . 197.0 83.0 186.0 0.0 . 94 . . Atlas-SNP ADAD1 132612 hgsc.bcm.edu hg19 4 123305084 123305084 + Silent SNP A A G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . ADAD1 NM_139243 exon5 c.A492G p.Q164Q TCTACAACTGGAT . 227.0 92.0 236.0 0.0 . 94 . . Atlas-SNP BBS12 166379 hgsc.bcm.edu hg19 4 123663998 123663998 + Silent SNP T T A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . BBS12 NM_001178007 exon3 c.T951A p.T317T TTTCACTTGCTGT . 159.0 57.0 152.0 0.0 . 63 . . Atlas-SNP FAM198B 51313 hgsc.bcm.edu hg19 4 159048727 159048727 + Missense_Mutation SNP G G C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . FAM198B NM_001031700 exon6 c.C1416G p.H472Q CCGTAAGTGCTGG . 119.0 55.0 89.0 0.0 . 134 . . Atlas-SNP GALNT7 51809 hgsc.bcm.edu hg19 4 174223196 174223196 + Splice_Site SNP A A T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . GALNT7 NM_017423 exon7 c.1149-2A>T . TTTCTTAGGTCCC . 104.0 38.0 89.0 0.0 . 61 . . Atlas-SNP MAST4 375449 hgsc.bcm.edu hg19 5 66386029 66386029 + Missense_Mutation SNP G G C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . MAST4 NM_001164664 exon6 c.G803C p.S268T CCCCCAGTGCCTC . 72.0 29.0 68.0 0.0 . 218 . . Atlas-SNP TRPC7 57113 hgsc.bcm.edu hg19 5 135693062 135693062 + Missense_Mutation SNP C C G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a TRPC7,NS,carcinoma,0,2 TRPC7 NM_001167576 exon2 c.G14C p.S5T AAGGTGCTGTTCC . 25.0 6.0 12.0 0.0 . 126 . . Atlas-SNP CDC25C 995 hgsc.bcm.edu hg19 5 137627755 137627755 + Missense_Mutation SNP G G T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CDC25C NM_001790 exon8 c.C666A p.N222K TGGCCTGTTCAAG . 121.0 48.0 108.0 0.0 . 37 . . Atlas-SNP CTNNA1 1495 hgsc.bcm.edu hg19 5 138223237 138223237 + Missense_Mutation SNP T T C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CTNNA1 NM_001903 exon9 c.T1202C p.L401P TTCCACTTTTGGT . 190.0 89.0 202.0 0.0 . 114 . . Atlas-SNP CTNNA1 1495 hgsc.bcm.edu hg19 5 138223240 138223240 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CTNNA1 NM_001903 exon9 c.T1205A p.L402X CACTTTTGGTATT . 194.0 91.0 203.0 0.0 . 114 . . Atlas-SNP PCDHB3 56132 hgsc.bcm.edu hg19 5 140482111 140482111 + Silent SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a PCDHB3,NS,carcinoma,0,1 PCDHB3 NM_018937 exon1 c.C1878T p.T626T GCGCACCGCCAGG . 60.0 5.0 54.0 0.0 . 208 . . Atlas-SNP PCDHB10 56126 hgsc.bcm.edu hg19 5 140574260 140574260 + Missense_Mutation SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . PCDHB10 NM_018930 exon1 c.C2135T p.A712V TCGTGGCGGTGCG . 70.0 30.0 60.0 0.0 . 177 . . Atlas-SNP PCDHGA10 56106 hgsc.bcm.edu hg19 5 140794696 140794696 + Missense_Mutation SNP G G T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . PCDHGA10 NM_032090 exon1 c.G1954T p.D652Y GTCCAGGACCACG . 146.0 12.0 135.0 0.0 . 114 . . Atlas-SNP PHF3 23469 hgsc.bcm.edu hg19 6 64395611 64395611 + Missense_Mutation SNP T T A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . PHF3 NM_015153 exon3 c.T1988A p.L663Q TGAAACTGAAAAA . 166.0 70.0 192.0 0.0 . 191 . . Atlas-SNP PTPRK 5796 hgsc.bcm.edu hg19 6 128540089 128540089 + Silent SNP A A G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a PTPRK_ENST00000368213,caecum,carcinoma,0,2 PTPRK NM_001135648 exon6 c.T846C p.N282N AGCAAAATTGGAC . 114.0 50.0 133.0 0.0 . 330 . . Atlas-SNP EPDR1 54749 hgsc.bcm.edu hg19 7 37989827 37989827 + Silent SNP A A T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . EPDR1 NM_017549 exon3 c.A504T p.T168T CTATACAGTCAAG . 131.0 48.0 165.0 0.0 . 48 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48313535 48313535 + Missense_Mutation SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . ABCA13 NM_152701 exon17 c.C4272A p.F1424L GAATTTCAGAGAT . 150.0 51.0 165.0 0.0 . 1192 . . Atlas-SNP VKORC1L1 154807 hgsc.bcm.edu hg19 7 65338522 65338522 + Missense_Mutation SNP G G T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . VKORC1L1 NM_173517 exon1 c.G164T p.W55L GGCCCTGGGTGAA . 75.0 26.0 65.0 0.0 . 14 . . Atlas-SNP CYP3A5 1577 hgsc.bcm.edu hg19 7 99247819 99247819 + Missense_Mutation SNP T T C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CYP3A5 NM_000777 exon12 c.A1290G p.I430M TGTGTATATGTAA . 194.0 50.0 197.0 0.0 . 46 . . Atlas-SNP HBP1 26959 hgsc.bcm.edu hg19 7 106827063 106827063 + Silent SNP T T G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . HBP1 NM_001244262 exon6 c.T732G p.V244V AGATGTTGAAGAT . 216.0 99.0 230.0 0.0 . 31 . . Atlas-SNP HBP1 26959 hgsc.bcm.edu hg19 7 106827072 106827072 + Missense_Mutation SNP T T G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . HBP1 NM_001244262 exon6 c.T741G p.F247L AGATTTTGCTAGA . 218.0 98.0 239.0 0.0 . 31 . . Atlas-SNP HBP1 26959 hgsc.bcm.edu hg19 7 106827075 106827075 + Silent SNP T T C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . HBP1 NM_001244262 exon6 c.T744C p.A248A TTTTGCTAGAGCT . 214.0 96.0 243.0 0.0 . 31 . . Atlas-SNP COG5 10466 hgsc.bcm.edu hg19 7 106843989 106843989 + Missense_Mutation SNP A A T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . COG5 NM_006348 exon22 c.T2555A p.L852H TTTTGAAGCAGCT . 88.0 27.0 93.0 0.0 . 78 . . Atlas-SNP TUSC3 7991 hgsc.bcm.edu hg19 8 15508269 15508269 + Missense_Mutation SNP C C G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . TUSC3 NM_178234 exon3 c.C372G p.N124K TTGTAACAAGCTC . 91.0 46.0 97.0 0.0 . 98 . . Atlas-SNP IMPA1 3612 hgsc.bcm.edu hg19 8 82598148 82598148 + Missense_Mutation SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . IMPA1 NM_001144878 exon2 c.G3A p.M1I CTGCCCCATCACT . 144.0 53.0 140.0 0.0 . 46 . . Atlas-SNP DCAF13 25879 hgsc.bcm.edu hg19 8 104427489 104427489 + Missense_Mutation SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . DCAF13 NM_015420 exon1 c.C271T p.L91F CCGCCCCTTGCTA . 173.0 10.0 181.0 0.0 . 66 . . Atlas-SNP COL14A1 7373 hgsc.bcm.edu hg19 8 121228707 121228707 + Missense_Mutation SNP C C A rs150549316 alternate_allele TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a COL14A1,NS,carcinoma,0,1 COL14A1 NM_021110 exon14 c.C1715A p.A572E ACAATGCAGATGG . 131.0 35.0 121.0 0.0 . 292 . C|1.000;T|0.000 Atlas-SNP CNTLN 54875 hgsc.bcm.edu hg19 9 17416135 17416135 + Missense_Mutation SNP A A G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CNTLN NM_017738 exon18 c.A3062G p.H1021R TCCTCCATCAACA . 274.0 112.0 276.0 0.0 . 128 . . Atlas-SNP STXBP1 6812 hgsc.bcm.edu hg19 9 130434340 130434340 + Missense_Mutation SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . STXBP1 NM_001032221 exon12 c.G974A p.R325Q CCATGCGGGACCT . 89.0 43.0 73.0 0.0 . 99 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26359123 26359123 + Missense_Mutation SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . MYO3A NM_017433 exon13 c.G1254A p.M418I ATCTATGATAACA . 237.0 18.0 199.0 0.0 . 371 . . Atlas-SNP CPEB3 22849 hgsc.bcm.edu hg19 10 94000049 94000049 + Missense_Mutation SNP T T C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CPEB3 NM_014912 exon2 c.A59G p.Q20R TGCCGCTGCTGCT . 120.0 6.0 134.0 0.0 . 43 . . Atlas-SNP FAM196A 642938 hgsc.bcm.edu hg19 10 128974496 128974496 + Missense_Mutation SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . FAM196A NM_001039762 exon4 c.C164T p.A55V TTCTGTGCCTCGC . 46.0 37.0 78.0 0.0 . 55 . . Atlas-SNP PSMC3 5702 hgsc.bcm.edu hg19 11 47441913 47441913 + Silent SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . PSMC3 NM_002804 exon10 c.C1029T p.L343L CGAGCGGAGGAGG . 50.0 20.0 54.0 0.0 . 35 . . Atlas-SNP DAGLA 747 hgsc.bcm.edu hg19 11 61511629 61511629 + Missense_Mutation SNP C C G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . DAGLA NM_006133 exon20 c.C2797G p.L933V CAAGACCTCTACT . 142.0 61.0 98.0 0.0 . 109 . . Atlas-SNP C2CD3 26005 hgsc.bcm.edu hg19 11 73824881 73824881 + Missense_Mutation SNP T T A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . C2CD3 NM_015531 exon11 c.A1787T p.K596M GCTGTCTTTCCCA . 92.0 22.0 93.0 0.0 . 288 . . Atlas-SNP CREBZF 58487 hgsc.bcm.edu hg19 11 85375725 85375725 + Silent SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CREBZF NM_001039618 exon1 c.C195T p.A65A CCTCCCGGCTTCC . 101.0 43.0 118.0 0.0 . 26 . . Atlas-SNP CNTN5 53942 hgsc.bcm.edu hg19 11 99715619 99715619 + Missense_Mutation SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CNTN5 NM_001243270 exon4 c.C313A p.P105T CAAGAACCAGATG . 152.0 56.0 179.0 0.0 . 324 . . Atlas-SNP CAPRIN2 65981 hgsc.bcm.edu hg19 12 30863221 30863221 + Missense_Mutation SNP A A C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CAPRIN2 NM_001002259 exon18 c.T2999G p.F1000C GCTGAGAAGGCAA . 126.0 48.0 155.0 0.0 . 109 . . Atlas-SNP KRT5 3852 hgsc.bcm.edu hg19 12 52908953 52908953 + Missense_Mutation SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a KRT5,NS,carcinoma,0,1 KRT5 NM_000424 exon9 c.C1546T p.L516F CGCCAAGACCTCC . 1449.0 550.0 1390.0 1.0 . 88 . . Atlas-SNP HSD17B6 8630 hgsc.bcm.edu hg19 12 57180920 57180920 + Missense_Mutation SNP A A G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . HSD17B6 NM_003725 exon5 c.A748G p.M250V AATATCATGAAGG . 120.0 23.0 74.0 0.0 . 26 . . Atlas-SNP WSCD2 9671 hgsc.bcm.edu hg19 12 108600076 108600076 + Silent SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a WSCD2,NS,haematopoietic_neoplasm,+2,1 WSCD2 NM_014653 exon3 c.C393A p.I131I GTACATCGGCTGC . 107.0 44.0 90.0 0.0 . 125 . . Atlas-SNP ATXN2 6311 hgsc.bcm.edu hg19 12 111951302 111951302 + Missense_Mutation SNP T T A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . ATXN2 NM_002973 exon11 c.A1897T p.N633Y TGTGATTTCGAGG . 118.0 7.0 108.0 0.0 . 99 . . Atlas-SNP MAPKAPK5 8550 hgsc.bcm.edu hg19 12 112308139 112308139 + Missense_Mutation SNP A A G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . MAPKAPK5 NM_139078 exon6 c.A458G p.N153S CTGAAAATCTGCT . 131.0 45.0 109.0 0.0 . 56 . . Atlas-SNP GCN1L1 10985 hgsc.bcm.edu hg19 12 120616729 120616729 + Missense_Mutation SNP G G T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . GCN1L1 NM_006836 exon6 c.C451A p.L151M CCTCCAGCAAGAG . 33.0 11.0 44.0 0.0 . 207 . . Atlas-SNP IRG1 730249 hgsc.bcm.edu hg19 13 77531639 77531639 + Missense_Mutation SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . IRG1 NM_001258406 exon4 c.C953A p.P318H ACAGGCCCTTTCC . 98.0 44.0 80.0 0.0 . 1 . . Atlas-SNP FARP1 10160 hgsc.bcm.edu hg19 13 99040698 99040698 + Missense_Mutation SNP A A G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . FARP1 NM_005766 exon9 c.A821G p.K274R AGAGGAAGCGCTT . 102.0 40.0 83.0 0.0 . 207 . . Atlas-SNP TM9SF1 10548 hgsc.bcm.edu hg19 14 24661413 24661413 + Missense_Mutation SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . TM9SF1 NM_001014842 exon4 c.G1117A p.V373M TCCACACCCAACG . 221.0 70.0 244.0 0.0 . 58 . . Atlas-SNP RALGAPA1 253959 hgsc.bcm.edu hg19 14 36017745 36017745 + Splice_Site SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . RALGAPA1 NM_014990 exon41 c.6104-1G>T . AATGATCTAAAGA . 69.0 30.0 109.0 0.0 . 289 . . Atlas-SNP TBPL2 387332 hgsc.bcm.edu hg19 14 55907152 55907152 + Missense_Mutation SNP T T C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . TBPL2 NM_199047 exon1 c.A112G p.T38A GGTAGGTCTCCTC . 174.0 61.0 175.0 0.0 . 27 . . Atlas-SNP ARID4A 5926 hgsc.bcm.edu hg19 14 58830925 58830925 + Missense_Mutation SNP A A C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . ARID4A NM_002892 exon20 c.A2118C p.L706F TGCTTTAGAAAAG . 382.0 154.0 390.0 0.0 . 222 . . Atlas-SNP CATSPERB 79820 hgsc.bcm.edu hg19 14 92185810 92185810 + Missense_Mutation SNP T T G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CATSPERB NM_024764 exon5 c.A322C p.I108L ACAAAATCCGATC . 118.0 40.0 100.0 0.0 . 114 . . Atlas-SNP TRIP11 9321 hgsc.bcm.edu hg19 14 92470139 92470139 + Missense_Mutation SNP T T A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . TRIP11 NM_004239 exon11 c.A4181T p.E1394V TTGATTTCTGAAT . 101.0 36.0 144.0 0.0 . 184 . . Atlas-SNP CHP1 11261 hgsc.bcm.edu hg19 15 41571555 41571555 + Missense_Mutation SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . . NM_007236 exon7 c.G556A p.E186K GATGTAGAACAGA . 125.0 54.0 101.0 0.0 . . . . Atlas-SNP RAB11FIP3 9727 hgsc.bcm.edu hg19 16 532669 532669 + Missense_Mutation SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . RAB11FIP3 NM_014700 exon4 c.G1048A p.V350M TCGGCCGTGCCCT . 86.0 4.0 87.0 0.0 . 31 . . Atlas-SNP GLYR1 84656 hgsc.bcm.edu hg19 16 4861735 4861735 + Missense_Mutation SNP T T C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . GLYR1 NM_032569 exon14 c.A1351G p.I451V CGGCAATAGTGGC . 69.0 28.0 59.0 0.0 . 49 . . Atlas-SNP CDH11 1009 hgsc.bcm.edu hg19 16 65025837 65025837 + Silent SNP A A T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CDH11 NM_001797 exon6 c.T645A p.G215G GATGATACCTGGA . 129.0 51.0 98.0 0.0 . 260 . . Atlas-SNP EIF1 10209 hgsc.bcm.edu hg19 17 39847045 39847045 + Silent SNP T T C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . EIF1 NM_005801 exon4 c.T309C p.A103A ACTGGCTAAGGAC . 89.0 28.0 88.0 0.0 . 10 . . Atlas-SNP G6PC 2538 hgsc.bcm.edu hg19 17 41056040 41056040 + Missense_Mutation SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . G6PC NM_001270397 exon2 c.C323T p.T108I CTGTAACCTGTGA . 89.0 40.0 100.0 0.0 . 48 . . Atlas-SNP ITGB4 3691 hgsc.bcm.edu hg19 17 73738423 73738423 + Missense_Mutation SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . ITGB4 NM_001005731 exon24 c.C2635A p.Q879K CCCAGGCAAGACC . 140.0 75.0 95.0 0.0 . 165 . . Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80038617 80038617 + Silent SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . FASN NM_004104 exon39 c.C6777T p.S2259S GGCCAGGCTGTGG . 187.0 47.0 121.0 0.0 . 154 . . Atlas-SNP EPB41L3 23136 hgsc.bcm.edu hg19 18 5410602 5410602 + Missense_Mutation SNP G G T rs373780287 alternate_allele TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a EPB41L3,NS,carcinoma,0,1 EPB41L3 NM_012307 exon14 c.C2084A p.T695K GTGTCCGTGCGCT . 75.0 47.0 93.0 0.0 . 222 . . Atlas-SNP SLC35E1 79939 hgsc.bcm.edu hg19 19 16664490 16664490 + Missense_Mutation SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . SLC35E1 NM_024881 exon6 c.G1233T p.X411Y TGGACTCTACACA . 122.0 10.0 110.0 0.0 . 48 . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 30935445 30935445 + Missense_Mutation SNP G G T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . ZNF536 NM_014717 exon2 c.G976T p.A326S ATCACGGCCGAGT . 56.0 4.0 51.0 0.0 . 424 . . Atlas-SNP ANKRD27 84079 hgsc.bcm.edu hg19 19 33108518 33108518 + Missense_Mutation SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . ANKRD27 NM_032139 exon21 c.G2029T p.V677F CAGCAACTGCTCT . 560.0 189.0 507.0 0.0 . 86 . . Atlas-SNP MAMSTR 284358 hgsc.bcm.edu hg19 19 49217263 49217263 + Missense_Mutation SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . MAMSTR NM_001130915 exon8 c.C763T p.R255C CGGCACGTGGAAG . 99.0 15.0 71.0 0.0 . 36 . . Atlas-SNP NUCB1 4924 hgsc.bcm.edu hg19 19 49407702 49407702 + Silent SNP G G A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . NUCB1 NM_006184 exon3 c.G234A p.E78E TGCGGAGGACATC . 61.0 24.0 68.0 0.0 . 44 . . Atlas-SNP SIGLEC6 946 hgsc.bcm.edu hg19 19 52033118 52033118 + Missense_Mutation SNP G G T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . SIGLEC6 NM_001177548 exon5 c.C905A p.P302H AGGGCGGGGAAGC . 123.0 42.0 130.0 0.0 . 142 . . Atlas-SNP TSEN34 79042 hgsc.bcm.edu hg19 19 54695356 54695356 + Silent SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . TSEN34 NM_024075 exon2 c.C141T p.G47G CCTGGGCCTCCCG . 44.0 18.0 45.0 0.0 . 17 . . Atlas-SNP LILRA1 11024 hgsc.bcm.edu hg19 19 55106839 55106839 + Silent SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . LILRA1 NM_006863 exon5 c.C633A p.P211P TCTACCCAGTGAT . 104.0 41.0 108.0 0.0 . 105 . . Atlas-SNP TTPAL 79183 hgsc.bcm.edu hg19 20 43108747 43108747 + Silent SNP A A T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . TTPAL NM_001039199 exon2 c.A108T p.T36T ACTGACAGAAGAC . 155.0 58.0 179.0 0.0 . 31 . . Atlas-SNP KRTAP13-2 337959 hgsc.bcm.edu hg19 21 31744028 31744028 + Silent SNP T T A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . KRTAP13-2 NM_181621 exon1 c.A504T p.S168S GAAGGTTGATCCA . 145.0 55.0 157.0 0.0 . 29 . . Atlas-SNP LDOC1L 84247 hgsc.bcm.edu hg19 22 44892922 44892922 + Missense_Mutation SNP T T C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . LDOC1L NM_032287 exon2 c.A515G p.E172G CGCAACTCTGCCA . 69.0 33.0 57.0 0.0 . 24 . . Atlas-SNP ADM2 79924 hgsc.bcm.edu hg19 22 50921204 50921204 + Silent SNP C C A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . ADM2 NM_024866 exon2 c.C319A p.R107R CTCCTGCGAGTGG . 125.0 50.0 108.0 0.0 . 15 . . Atlas-SNP MAGEB2 4113 hgsc.bcm.edu hg19 X 30237136 30237136 + Missense_Mutation SNP G G C novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . MAGEB2 NM_002364 exon2 c.G439C p.E147Q TTCAGGGAGCACT . 91.0 76.0 105.0 0.0 . 133 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53672263 53672263 + Silent SNP C C T novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . HUWE1 NM_031407 exon7 c.G504A p.E168E ACTCACCTCTGCC . 37.0 29.0 47.0 0.0 . 724 . . Atlas-SNP TMEM206 55248 hgsc.bcm.edu hg19 1 212548579 212548580 + Frame_Shift_Ins INS - - A novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . TMEM206 NM_001198862 exon8 c.1030_1031insT p.V344fs . . 223.0 74.0 173.0 0.0 . 41 . . Atlas-INDEL AKR1C2 1646 hgsc.bcm.edu hg19 10 5032215 5032216 + Frame_Shift_Ins INS - - G novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . AKR1C2 NM_001354 exon11 c.945_946insC p.P315fs . . 532.0 132.0 546.0 0.0 . 68 . . Atlas-INDEL CDH13 1012 hgsc.bcm.edu hg19 16 83704424 83704424 + Frame_Shift_Del DEL G G - novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . CDH13 NM_001220488 exon10 c.1271delT p.V424fs . . 153.0 62.0 136.0 0.0 . 97 . . Atlas-INDEL PISD 23761 hgsc.bcm.edu hg19 22 32019822 32019822 + Frame_Shift_Del DEL G G - rs35090450 TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . PISD NM_014338 exon4 c.68delA p.Q23fs . . 128.0 49.0 145.0 0.0 . 53 . . Atlas-INDEL PTEN 5728 hgsc.bcm.edu hg19 10 89717669 89717674 + In_Frame_Del DEL ACACGA ACACGA - novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 ACACGA ACACGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . PTEN NM_000314 exon7 c.693_698del p.231_233del . . 63.0 27.0 161.0 0.0 . 3652 . . Atlas-INDEL THOP1 7064 hgsc.bcm.edu hg19 19 2810300 2810337 + Frame_Shift_Del DEL CCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCG CCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCG - novel TCGA-DD-AAE2-01A-11D-A40R-10 TCGA-DD-AAE2-10A-01D-A40U-10 CCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCG CCTGGGCACTCTGAGGCTCTGCCCCATCCCTGCAGGCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 66c712a0-e797-4c8f-9f9b-ff7706b87d78 318f2f81-2c67-4132-aeb5-4179b9cc568a . THOP1 NM_003249 exon10 c.1456_1457del p.486_486del . . 67.0 19.0 69.0 0.0 . 49 . . Atlas-INDEL