Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm EIF4G3 8672 hgsc.bcm.edu hg19 1 21183930 21183930 + Missense_Mutation SNP A A G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . EIF4G3 NM_001198801 exon23 c.T3245C p.V1082A TCCAGTACCCGAC . 74.0 24.0 88.0 0.0 . 300 . . Atlas-SNP AHDC1 27245 hgsc.bcm.edu hg19 1 27877569 27877569 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . AHDC1 NM_001029882 exon6 c.C1058T p.P353L CCCAGGGGCTGCT . 70.0 16.0 88.0 0.0 . 98 . . Atlas-SNP IFI44L 10964 hgsc.bcm.edu hg19 1 79095456 79095456 + Missense_Mutation SNP C C A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . IFI44L NM_006820 exon4 c.C579A p.D193E TGCAGACTTGGTT . 68.0 28.0 54.0 0.0 . 93 . . Atlas-SNP SLC22A15 55356 hgsc.bcm.edu hg19 1 116574049 116574049 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . SLC22A15 NM_018420 exon6 c.C791T p.A264V AAGAGGCGCTGTA . 81.0 24.0 116.0 0.0 . 65 . . Atlas-SNP IQGAP3 128239 hgsc.bcm.edu hg19 1 156521882 156521882 + Missense_Mutation SNP A A G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . IQGAP3 NM_178229 exon14 c.T1454C p.F485S GCATCGAAGTAAC . 127.0 16.0 49.0 0.0 . 146 . . Atlas-SNP ADCY10 55811 hgsc.bcm.edu hg19 1 167830128 167830128 + Missense_Mutation SNP T T C novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ADCY10 NM_018417 exon15 c.A1790G p.N597S ATGTCATTAAGAA . 221.0 40.0 103.0 0.0 . 175 . . Atlas-SNP LRRN2 10446 hgsc.bcm.edu hg19 1 204589034 204589034 + Silent SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . LRRN2 NM_006338 exon3 c.C87T p.C29C AGGGGGGCAGGGA . 139.0 25.0 90.0 0.0 . 81 . . Atlas-SNP ADI1 55256 hgsc.bcm.edu hg19 2 3523232 3523232 + Silent SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ADI1 NM_018269 exon1 c.C27T p.D9D CGGGGCGTCGTCC . 64.0 15.0 95.0 0.0 . 12 . . Atlas-SNP CCDC164 92749 hgsc.bcm.edu hg19 2 26652600 26652600 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . CCDC164 NM_145038 exon5 c.G645A p.M215I TGTGATGAAAACC . 99.0 28.0 102.0 0.0 . 84 . . Atlas-SNP ATRAID 51374 hgsc.bcm.edu hg19 2 27435079 27435079 + Missense_Mutation SNP C C G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . . NM_080592 exon1 c.C8G p.T3S TGAAGACCAGCGC . 272.0 21.0 254.0 0.0 . . . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141200109 141200109 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . LRP1B NM_018557 exon66 c.C10378T p.P3460S AGTCTGGATCCTC . 93.0 18.0 102.0 0.0 . 1315 . . Atlas-SNP KIF5C 3800 hgsc.bcm.edu hg19 2 149806841 149806841 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . KIF5C NM_004522 exon10 c.C833T p.P278L ATGTGCCATACCG . 62.0 5.0 45.0 0.0 . 166 . . Atlas-SNP ZNF148 7707 hgsc.bcm.edu hg19 3 124951547 124951547 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ZNF148 NM_021964 exon9 c.C2023T p.H675Y CAAAGTGGGACTT . 92.0 51.0 86.0 0.0 . 84 . . Atlas-SNP MGLL 11343 hgsc.bcm.edu hg19 3 127414028 127414028 + Silent SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . MGLL NM_007283 exon7 c.C606T p.D202D ATAAATGTCGACC . 137.0 29.0 159.0 0.0 . 19 . . Atlas-SNP MED12L 116931 hgsc.bcm.edu hg19 3 151107778 151107778 + Missense_Mutation SNP G G T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . MED12L NM_053002 exon36 c.G5358T p.Q1786H TCCACAGAGCAAC . 63.0 7.0 64.0 0.0 . 271 . . Atlas-SNP ABCC5 10057 hgsc.bcm.edu hg19 3 183667774 183667774 + Silent SNP C C A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ABCC5 NM_005688 exon21 c.G3084T p.L1028L AATGTGCAGGACT . 151.0 34.0 157.0 0.0 . 142 . . Atlas-SNP SLIT2 9353 hgsc.bcm.edu hg19 4 20533635 20533635 + Silent SNP T T C novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . SLIT2 NM_004787 exon17 c.T1642C p.L548L ACCGTGTTGGAAG . 265.0 88.0 374.0 0.0 . 290 . . Atlas-SNP PALLD 23022 hgsc.bcm.edu hg19 4 169602487 169602487 + Silent SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . PALLD NM_001166108 exon4 c.C1092T p.A364A AGGTGCCAGTTCA . 29.0 13.0 53.0 0.0 . 179 . . Atlas-SNP RXFP3 51289 hgsc.bcm.edu hg19 5 33937055 33937055 + Silent SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . RXFP3 NM_016568 exon1 c.G210A p.G70G CGGCGGGGCAGAG . 104.0 7.0 92.0 0.0 . 114 . . Atlas-SNP RAD50 10111 hgsc.bcm.edu hg19 5 131893023 131893023 + Missense_Mutation SNP C C G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . RAD50 NM_005732 exon1 c.C7G p.R3G ATGTCCCGGATCG . 178.0 50.0 168.0 0.0 . 246 . . Atlas-SNP PCDHGA1 56114 hgsc.bcm.edu hg19 5 140711458 140711458 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 PCDHGA1_ENST00000517417,NS,carcinoma,-1,4 PCDHGA1 NM_018912 exon1 c.C1207T p.R403C TATTACCGTTTAG . 95.0 21.0 91.0 0.0 . 397 . . Atlas-SNP PDGFRB 5159 hgsc.bcm.edu hg19 5 149504387 149504387 + Silent SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . PDGFRB NM_002609 exon13 c.C1815T p.T605T GCCGAGGGTGCGT . 25.0 13.0 21.0 0.0 . 142 . . Atlas-SNP PRRC2A 7916 hgsc.bcm.edu hg19 6 31600194 31600194 + Silent SNP T T G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . PRRC2A NM_004638 exon16 c.T3744G p.A1248A GAGGGCTCAGCAG . 69.0 16.0 54.0 0.0 . 152 . . Atlas-SNP PRDM13 59336 hgsc.bcm.edu hg19 6 100061211 100061211 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . PRDM13 NM_021620 exon4 c.G700A p.A234T TCTTCCGCGCCCT . 54.0 10.0 43.0 0.0 . 65 . . Atlas-SNP FIG4 9896 hgsc.bcm.edu hg19 6 110085143 110085143 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . FIG4 NM_014845 exon13 c.G1392A p.W464X CAGGTGGAATGAA . 131.0 55.0 90.0 0.0 . 77 . . Atlas-SNP THEMIS 387357 hgsc.bcm.edu hg19 6 128134119 128134119 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . THEMIS NM_001010923 exon4 c.G1667A p.R556H GGAGGGCGAGGTG . 93.0 18.0 75.0 0.0 . 168 . . Atlas-SNP THEMIS 387357 hgsc.bcm.edu hg19 6 128135074 128135074 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 THEMIS,NS,carcinoma,0,3 THEMIS NM_001010923 exon4 c.C712T p.R238X CTTTTCGAACTAA . 60.0 18.0 59.0 0.0 . 168 . . Atlas-SNP KDELR2 11014 hgsc.bcm.edu hg19 7 6509351 6509351 + Missense_Mutation SNP T T C novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . KDELR2 NM_001100603 exon3 c.A227G p.Y76C ATCAGGTACACTG . 246.0 18.0 150.0 0.0 . 31 . . Atlas-SNP ABCB5 340273 hgsc.bcm.edu hg19 7 20689688 20689688 + Missense_Mutation SNP T T A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ABCB5 NM_001163941 exon12 c.T1250A p.V417D AGACAGTCGCCTT . 116.0 25.0 88.0 0.0 . 357 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100681533 100681533 + Missense_Mutation SNP C C A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . MUC17 NM_001040105 exon3 c.C6836A p.T2279N GAACGACTCCATT . 67.0 7.0 58.0 0.0 . 804 . . Atlas-SNP RBM28 55131 hgsc.bcm.edu hg19 7 127979340 127979340 + Missense_Mutation SNP T T C novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . RBM28 NM_018077 exon3 c.A313G p.K105E CTTTTTTAGCCTT . 48.0 11.0 58.0 0.0 . 71 . . Atlas-SNP CYP11B1 1584 hgsc.bcm.edu hg19 8 143961168 143961168 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . CYP11B1 NM_000497 exon1 c.C62T p.A21V GCCTGTGCCCTTT . 98.0 22.0 48.0 0.0 . 128 . . Atlas-SNP FOXE1 2304 hgsc.bcm.edu hg19 9 100616728 100616728 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . FOXE1 NM_004473 exon1 c.G532A p.A178T GCCGCCGCCGCCA . 211.0 15.0 162.0 0.0 . 19 . . Atlas-SNP SGPL1 8879 hgsc.bcm.edu hg19 10 72633292 72633292 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . SGPL1 NM_003901 exon12 c.G1244A p.G415D AGAACGGCTATGT . 65.0 14.0 49.0 0.0 . 37 . . Atlas-SNP TCTN3 26123 hgsc.bcm.edu hg19 10 97442541 97442541 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . TCTN3 NM_015631 exon12 c.G1319A p.S440N AAGTGGCTGCAGT . 45.0 22.0 46.0 0.0 . 66 . . Atlas-SNP OR5AP2 338675 hgsc.bcm.edu hg19 11 56409796 56409796 + Silent SNP G G T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . OR5AP2 NM_001002925 exon1 c.C120A p.I40I CATATAGATCAAC . 100.0 43.0 62.0 0.0 . 69 . . Atlas-SNP SLC25A45 283130 hgsc.bcm.edu hg19 11 65147644 65147644 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . SLC25A45 NM_182556 exon3 c.G40A p.A14T CCAGAGCGCCTGT . 108.0 55.0 94.0 0.0 . 23 . . Atlas-SNP OR10S1 219873 hgsc.bcm.edu hg19 11 123847876 123847876 + Missense_Mutation SNP A A C novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . OR10S1 NM_001004474 exon1 c.T523G p.S175A TGAGGGAGGTGTG . 115.0 28.0 76.0 0.0 . 78 . . Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133816010 133816010 + Missense_Mutation SNP G G C novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . IGSF9B NM_014987 exon2 c.C208G p.P70A AGATAGGGATGGG . 140.0 64.0 110.0 0.0 . 290 . . Atlas-SNP CS 1431 hgsc.bcm.edu hg19 12 56676233 56676233 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . CS NM_004077 exon6 c.C559T p.Q187X TACCCTGTGCATA . 132.0 8.0 103.0 0.0 . 44 . . Atlas-SNP RNF17 56163 hgsc.bcm.edu hg19 13 25433221 25433221 + Silent SNP A A G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . RNF17 NM_031277 exon26 c.A3693G p.K1231K GAAAAAAGGAGAA . 78.0 4.0 107.0 0.0 . 259 . . Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 29012442 29012442 + Silent SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . FLT1 NM_002019 exon4 c.C429T p.P143P AATTTCGGGGATT . 39.0 15.0 55.0 0.0 . 393 . . Atlas-SNP ARHGEF40 55701 hgsc.bcm.edu hg19 14 21541244 21541244 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ARHGEF40 NM_018071 exon2 c.C44T p.A15V CTCTCGCCGCCCT . 46.0 9.0 55.0 0.0 . 84 . . Atlas-SNP HERC2 8924 hgsc.bcm.edu hg19 15 28421672 28421672 + Silent SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . HERC2 NM_004667 exon63 c.C9588T p.P3196P GTTCTGGGGAATG . 118.0 26.0 153.0 0.0 . 501 . . Atlas-SNP HDC 3067 hgsc.bcm.edu hg19 15 50549685 50549685 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . HDC NM_002112 exon4 c.G378A p.M126I TCCCAGCATTTTT . 44.0 28.0 42.0 0.0 . 86 . . Atlas-SNP ZSCAN10 84891 hgsc.bcm.edu hg19 16 3139523 3139523 + Nonsense_Mutation SNP C C A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ZSCAN10 NM_032805 exon5 c.G1747T p.E583X CGCACTCGCTGCA . 44.0 15.0 74.0 0.0 . 63 . . Atlas-SNP TRAP1 10131 hgsc.bcm.edu hg19 16 3713465 3713465 + Silent SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . TRAP1 NM_016292 exon14 c.G1668A p.V556V GTGATCCACGACT . 39.0 19.0 64.0 0.0 . 53 . . Atlas-SNP ITGAD 3681 hgsc.bcm.edu hg19 16 31422687 31422687 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ITGAD NM_005353 exon14 c.G1556A p.R519H GGGGCCGCTTTGG . 81.0 23.0 110.0 0.0 . 154 . . Atlas-SNP PMFBP1 83449 hgsc.bcm.edu hg19 16 72198723 72198723 + Silent SNP T T C novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . PMFBP1 NM_031293 exon3 c.A105G p.R35R CCTCTGTCTCTTG . 37.0 29.0 45.0 0.0 . 101 . . Atlas-SNP CDT1 81620 hgsc.bcm.edu hg19 16 88871218 88871218 + Missense_Mutation SNP G G C novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . CDT1 NM_030928 exon3 c.G400C p.G134R GAGCTGGGGGCAA . 87.0 66.0 88.0 0.0 . 30 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577524 7577524 + Missense_Mutation SNP T T C novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 TP53_ENST00000413465,NS,carcinoma,+1,1 TP53 NM_000546 exon7 c.A757G p.T253A TGATGGTGAGGAT . 62.0 38.0 77.0 0.0 . 33396 . . Atlas-SNP KRT10 3858 hgsc.bcm.edu hg19 17 38975319 38975319 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . KRT10 NM_000421 exon7 c.G1468A p.G490S CGTGGCCGCCGCC . 143.0 9.0 62.0 0.0 . 56 . . Atlas-SNP KRT9 3857 hgsc.bcm.edu hg19 17 39726179 39726179 + Missense_Mutation SNP A A T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . KRT9 NM_000226 exon3 c.T814A p.S272T GGTCAGACTTCTC . 86.0 47.0 66.0 0.0 . 78 . . Atlas-SNP ARHGAP27 201176 hgsc.bcm.edu hg19 17 43480082 43480082 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ARHGAP27 NM_199282 exon9 c.G718A p.E240K TCACCTCCAGCAC . 61.0 19.0 32.0 0.0 . 37 . . Atlas-SNP NACA2 342538 hgsc.bcm.edu hg19 17 59668029 59668029 + Silent SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . NACA2 NM_199290 exon1 c.C513T p.V171V TTCATCGACCTCT . 63.0 7.0 67.0 0.0 . 33 . . Atlas-SNP SLMO1 10650 hgsc.bcm.edu hg19 18 12427045 12427045 + Silent SNP A A G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . SLMO1 NM_001142405 exon4 c.A297G p.T99T GATCACACTCACA . 105.0 52.0 110.0 0.0 . 11 . . Atlas-SNP ZNF521 25925 hgsc.bcm.edu hg19 18 22804905 22804905 + Missense_Mutation SNP A A T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ZNF521 NM_015461 exon4 c.T2977A p.C993S TCTTGCAAATCCG . 50.0 19.0 43.0 0.0 . 269 . . Atlas-SNP SMAD4 4089 hgsc.bcm.edu hg19 18 48591919 48591919 + Missense_Mutation SNP G G A rs377767347 bycluster TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 SMAD4,caecum,carcinoma,+1,22 SMAD4 NM_005359 exon9 c.G1082A p.R361H GAGATCGCTTTTG . 57.0 21.0 85.0 0.0 . 822 . . Atlas-SNP CCDC102B 79839 hgsc.bcm.edu hg19 18 66504069 66504069 + Silent SNP T T A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . CCDC102B NM_001093729 exon4 c.T69A p.I23I ATCAATTAAGTCA . 36.0 5.0 69.0 0.0 . 92 . . Atlas-SNP C2CD4C 126567 hgsc.bcm.edu hg19 19 407984 407984 + Silent SNP A A G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . C2CD4C NM_001136263 exon2 c.T378C p.T126T GGCGTCAGTGGCC . 162.0 73.0 127.0 0.0 . 13 . . Atlas-SNP CD97 976 hgsc.bcm.edu hg19 19 14501784 14501784 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . CD97 NM_078481 exon4 c.C239T p.S80L AATTCTCGGACTG . 160.0 31.0 111.0 0.0 . 86 . . Atlas-SNP HPN 3249 hgsc.bcm.edu hg19 19 35540393 35540393 + Missense_Mutation SNP A A T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . HPN NM_182983 exon4 c.A133T p.R45W CTCCTCAGGAGTG . 42.0 8.0 39.0 0.0 . 45 . . Atlas-SNP LRFN3 79414 hgsc.bcm.edu hg19 19 36431682 36431682 + Missense_Mutation SNP C C G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . LRFN3 NM_024509 exon2 c.C1355G p.P452R CTATCCCGGGCAT . 92.0 36.0 73.0 0.0 . 43 . . Atlas-SNP CYP2A13 1553 hgsc.bcm.edu hg19 19 41599545 41599545 + Missense_Mutation SNP A A G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . CYP2A13 NM_000766 exon6 c.A842G p.N281S AGAAGAACCCCAA . 150.0 32.0 116.0 0.0 . 90 . . Atlas-SNP ATP1A3 478 hgsc.bcm.edu hg19 19 42485722 42485722 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ATP1A3 NM_001256214 exon11 c.G1408A p.V470M GCTTCACGGAGCC . 80.0 33.0 60.0 0.0 . 117 . . Atlas-SNP IGFL2 147920 hgsc.bcm.edu hg19 19 46663963 46663963 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . IGFL2 NM_001002915 exon4 c.G199A p.A67T AATGACGCCATCG . 71.0 19.0 61.0 0.0 . 15 . . Atlas-SNP SBK2 646643 hgsc.bcm.edu hg19 19 56041657 56041657 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . SBK2 NM_001101401 exon4 c.G490A p.A164T GGGCGGCGCAGCG . 42.0 11.0 31.0 0.0 . 26 . . Atlas-SNP CHD6 84181 hgsc.bcm.edu hg19 20 40050514 40050514 + Silent SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . CHD6 NM_032221 exon31 c.C4761T p.G1587G GGCAGTGCCGATG . 155.0 21.0 67.0 0.0 . 312 . . Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57769145 57769145 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . ZNF831 NM_178457 exon1 c.G3071A p.G1024E TGGGGGGGGACAA . 59.0 9.0 21.0 0.0 . 287 . . Atlas-SNP IL2RB 3560 hgsc.bcm.edu hg19 22 37524403 37524403 + Silent SNP G G T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . IL2RB NM_000878 exon10 c.C1389A p.V463V TCTGGGGACTCTT . 96.0 13.0 57.0 0.0 . 44 . . Atlas-SNP EP300 2033 hgsc.bcm.edu hg19 22 41547912 41547912 + Missense_Mutation SNP C C G novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . EP300 NM_001429 exon15 c.C2893G p.Q965E AATTCTCAGGCCA . 208.0 39.0 115.0 0.0 . 367 . . Atlas-SNP FAM47A 158724 hgsc.bcm.edu hg19 X 34149816 34149816 + Missense_Mutation SNP T T C novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . FAM47A NM_203408 exon1 c.A580G p.T194A CCGGAGTCTCGGG . 80.0 28.0 105.0 0.0 . 249 . . Atlas-SNP KLHL4 56062 hgsc.bcm.edu hg19 X 86887268 86887268 + Silent SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . KLHL4 NM_019117 exon7 c.C1383T p.T461T TGGCACCATGAAT . 204.0 30.0 278.0 0.0 . 263 . . Atlas-SNP RNF128 79589 hgsc.bcm.edu hg19 X 105970508 105970508 + Missense_Mutation SNP G G A novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . RNF128 NM_194463 exon1 c.G365A p.R122H TCCAACGCGGCGG . 169.0 44.0 222.0 0.0 . 74 . . Atlas-SNP STAG2 10735 hgsc.bcm.edu hg19 X 123205074 123205074 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . STAG2 NM_001042749 exon25 c.C2434T p.P812S TTAGAGCCATTAG . 79.0 13.0 87.0 0.0 . 309 . . Atlas-SNP AFF2 2334 hgsc.bcm.edu hg19 X 147919196 147919196 + Missense_Mutation SNP C C T novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . AFF2 NM_002025 exon5 c.C1112T p.P371L CTACTCCTCTCAC . 65.0 17.0 82.0 0.0 . 679 . . Atlas-SNP MIR600HG 81571 hgsc.bcm.edu hg19 9 125874203 125874204 + RNA INS - - CTC novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . . . . . . . . 61.0 30.0 63.0 0.0 . . . . Atlas-INDEL NYAP1 222950 hgsc.bcm.edu hg19 7 100086313 100086313 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . . NM_173564 exon4 c.968delT p.I323fs . . 94.0 21.0 98.0 0.0 . . . . Atlas-INDEL SMAD4 4089 hgsc.bcm.edu hg19 18 48575093 48575093 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . SMAD4 NM_005359 exon3 c.286delG p.A96fs . . 74.0 12.0 107.0 0.0 . 822 . . Atlas-INDEL FEZF2 55079 hgsc.bcm.edu hg19 3 62358214 62358215 + In_Frame_Ins INS - - CCGCCG novel TCGA-DD-AAE0-01A-11D-A40R-10 TCGA-DD-AAE0-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2a18f024-178d-46d9-880b-a751edf71b67 42e0aa56-bad8-4d28-adb6-4f956cbaf658 . FEZF2 NM_018008 exon2 c.330_331insCGGCGG p.G110delinsGGG . . 46.0 16.0 33.0 0.0 . 46 . . Atlas-INDEL