Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PADI3	51702	hgsc.bcm.edu	hg19	1	17586227	17586227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	PADI3	NM_016233	exon2	c.C247G	p.P83A	AACTCCCCCAGCA	.	77.0	7.0	150.0	0.0	.	81	.	.	Atlas-SNP
COL8A2	1296	hgsc.bcm.edu	hg19	1	36563771	36563771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	COL8A2	NM_005202	exon2	c.G1511A	p.G504E	GTGGGCCCAGCCG	.	53.0	22.0	58.0	0.0	.	41	.	.	Atlas-SNP
NEGR1	257194	hgsc.bcm.edu	hg19	1	71873213	71873213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	NEGR1	NM_173808	exon7	c.T981A	p.D327E	AAGAACATCAGCG	.	470.0	42.0	564.0	0.0	.	60	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	hg19	1	145367777	145367777	+	Missense_Mutation	SNP	G	G	T	rs200743139	bycluster	TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	NBPF10,NS,carcinoma,0,1	NBPF10	NM_001039703	exon83	c.G10373T	p.R3458M	GAAGAAGGGGAAG	.	6.0	5.0	1.0	0.0	.	221	.	.	Atlas-SNP
KPRP	448834	hgsc.bcm.edu	hg19	1	152733003	152733003	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	KPRP	NM_001025231	exon2	c.C939T	p.P313P	CCGCCCCATTTCA	.	131.0	25.0	63.0	0.0	.	152	.	.	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	hg19	1	154310110	154310110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	ATP8B2	NM_001005855	exon12	c.G1124T	p.S375I	TGAGAAGTAACGA	.	373.0	78.0	133.0	0.0	.	158	.	.	Atlas-SNP
CDK18	5129	hgsc.bcm.edu	hg19	1	205495307	205495307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	CDK18	NM_212503	exon6	c.G661A	p.V221M	CGAGAGGGTACAG	.	331.0	25.0	160.0	0.0	.	75	.	.	Atlas-SNP
TMEM206	55248	hgsc.bcm.edu	hg19	1	212558750	212558750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	TMEM206	NM_001198862	exon5	c.G544A	p.G182S	CCTGACCGGGGTA	.	199.0	17.0	126.0	0.0	.	41	.	.	Atlas-SNP
MBD5	55777	hgsc.bcm.edu	hg19	2	149240972	149240972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	MBD5	NM_018328	exon10	c.C2812G	p.L938V	CAGAATCTATTAA	.	64.0	21.0	65.0	0.0	.	164	.	.	Atlas-SNP
UBE2K	3093	hgsc.bcm.edu	hg19	4	39780035	39780035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	UBE2K	NM_005339	exon7	c.A584G	p.E195G	CAACAGAATTGCT	.	62.0	26.0	54.0	0.0	.	16	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114278698	114278698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	ANK2	NM_001148	exon38	c.G8924T	p.S2975I	TGGCAAGCTCCTC	.	135.0	69.0	153.0	0.0	.	576	.	.	Atlas-SNP
FGA	2243	hgsc.bcm.edu	hg19	4	155506805	155506805	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	FGA	NM_000508	exon5	c.A1776G	p.G592G	GGAGTCTCCTCTG	.	42.0	28.0	92.0	0.0	.	179	.	.	Atlas-SNP
LIFR	3977	hgsc.bcm.edu	hg19	5	38523562	38523562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	LIFR	NM_002310	exon5	c.A520G	p.I174V	CTTTAATTTCCCA	.	615.0	272.0	593.0	0.0	.	348	.	.	Atlas-SNP
FAM196B	100131897	hgsc.bcm.edu	hg19	5	169309963	169309963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	FAM196B	NM_001129891	exon2	c.C940A	p.Q314K	AGCCTTGTGAGGG	.	74.0	32.0	79.0	0.0	.	28	.	.	Atlas-SNP
HIST1H3A	8350	hgsc.bcm.edu	hg19	6	26021005	26021005	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	HIST1H3A	NM_003529	exon1	c.G288C	p.A96A	GGAGGCGTGCGAG	.	126.0	41.0	145.0	0.0	.	14	.	.	Atlas-SNP
C6orf15	29113	hgsc.bcm.edu	hg19	6	31079471	31079471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	C6orf15	NM_014070	exon2	c.G665A	p.G222D	CCAGGGCCTCCAC	.	99.0	10.0	87.0	0.0	.	29	.	.	Atlas-SNP
TCP11	6954	hgsc.bcm.edu	hg19	6	35088734	35088734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	TCP11	NM_001093728	exon6	c.A706G	p.I236V	ACTGAATGGAATG	.	246.0	101.0	211.0	0.0	.	94	.	.	Atlas-SNP
SMPD2	6610	hgsc.bcm.edu	hg19	6	109764480	109764480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	SMPD2	NM_003080	exon9	c.G740T	p.G247V	TTTCTGGGTTTTA	.	81.0	11.0	98.0	0.0	.	25	.	.	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	hg19	7	36461497	36461497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	ANLN	NM_018685	exon13	c.C2195T	p.T732I	AACAGACAGTGAT	.	267.0	29.0	267.0	0.0	.	101	.	.	Atlas-SNP
MLXIPL	51085	hgsc.bcm.edu	hg19	7	73008624	73008624	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	MLXIPL	NM_032951	exon16	c.C2420G	p.S807C	GGCAGAGAGCAGT	.	40.0	13.0	32.0	0.0	.	54	.	.	Atlas-SNP
MCM7	4176	hgsc.bcm.edu	hg19	7	99693609	99693609	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	MCM7	NM_005916	exon11	c.C1383A	p.V461V	CTCCATGACCTCG	.	82.0	8.0	52.0	0.0	.	136	.	.	Atlas-SNP
ARFGEF1	10565	hgsc.bcm.edu	hg19	8	68179424	68179424	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	ARFGEF1	NM_006421	exon12	c.G1714C	p.D572H	TTAAGTCACAGTC	.	90.0	9.0	100.0	0.0	.	196	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77617394	77617394	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	ZFHX4	NM_024721	exon2	c.T1071G	p.D357E	ACCCGATCCAACC	.	75.0	34.0	70.0	0.0	.	878	.	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	hg19	8	100832349	100832349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	VPS13B,NS,carcinoma,0,1	VPS13B	NM_017890	exon49	c.A9068T	p.Q3023L	ATTTTCAGGTACT	.	63.0	4.0	79.0	0.0	.	811	.	.	Atlas-SNP
IFNA8	3445	hgsc.bcm.edu	hg19	9	21409229	21409229	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	IFNA8	NM_002170	exon1	c.A54T	p.S18S	CAAGTCATTCAGC	.	75.0	29.0	49.0	0.0	.	19	.	.	Atlas-SNP
RFK	55312	hgsc.bcm.edu	hg19	9	79009045	79009045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	RFK	NM_018339	exon1	c.G43A	p.G15S	CGAAGCCCCGCAC	.	139.0	56.0	127.0	0.0	.	13	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	62.0	3.0	43.0	1.0	.	384	.	.	Atlas-SNP
SPATA31C2	645961	hgsc.bcm.edu	hg19	9	90748542	90748542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	.	NM_001166137	exon2	c.C232T	p.P78S	CTCTGGGCCTCCC	.	412.0	58.0	353.0	0.0	.	.	.	.	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21805720	21805720	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	.	NM_207371	exon4	c.T1032C	p.H344H	GTGGTGATGGTGG	.	96.0	4.0	55.0	0.0	.	.	.	.	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	hg19	10	117075120	117075120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	ATRNL1	NM_207303	exon18	c.C2911T	p.H971Y	AGAGGACATTGCA	.	87.0	38.0	89.0	0.0	.	219	.	.	Atlas-SNP
HMX3	340784	hgsc.bcm.edu	hg19	10	124895890	124895890	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	HMX3	NM_001105574	exon1	c.C324T	p.H108H	CGCGCACTACCTG	.	143.0	58.0	106.0	0.0	.	24	.	.	Atlas-SNP
SLC35C1	55343	hgsc.bcm.edu	hg19	11	45832352	45832352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	SLC35C1	NM_018389	exon2	c.G561C	p.Q187H	GGACCAGGAGGGG	.	47.0	4.0	50.0	0.0	.	23	.	.	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	hg19	11	55579749	55579749	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	OR5L1	NM_001004738	exon1	c.T807C	p.D269D	TGGAGATGCTGAC	.	109.0	12.0	104.0	0.0	.	145	.	.	Atlas-SNP
CATSPER1	117144	hgsc.bcm.edu	hg19	11	65789252	65789252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	CATSPER1	NM_053054	exon3	c.T1528C	p.F510L	TCCAGAAGTCAAA	.	204.0	19.0	155.0	0.0	.	101	.	.	Atlas-SNP
RNF169	254225	hgsc.bcm.edu	hg19	11	74547698	74547698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	RNF169	NM_001098638	exon6	c.A2050G	p.R684G	AATGAGAGGCGGA	.	68.0	5.0	56.0	0.0	.	36	.	.	Atlas-SNP
OR10G4	390264	hgsc.bcm.edu	hg19	11	123886338	123886338	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	OR10G4	NM_001004462	exon1	c.A57T	p.P19P	TGCCCCAGGGCTG	.	232.0	21.0	156.0	0.0	.	77	.	.	Atlas-SNP
KRT83	3889	hgsc.bcm.edu	hg19	12	52710776	52710776	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	KRT83	NM_002282	exon5	c.A782T	p.D261V	GAGGTGTCTGAGA	.	82.0	32.0	66.0	0.0	.	64	.	.	Atlas-SNP
AGAP2	116986	hgsc.bcm.edu	hg19	12	58131312	58131312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	AGAP2_ENST00000547588,NS,carcinoma,0,1	AGAP2	NM_001122772	exon1	c.G718A	p.A240T	CGGCGGCGGTGGC	.	75.0	4.0	80.0	0.0	.	167	.	.	Atlas-SNP
MSRB3	253827	hgsc.bcm.edu	hg19	12	65672604	65672604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	MSRB3	NM_198080	exon1	c.T56C	p.L19P	TCTGCCTCTGCCT	.	160.0	14.0	148.0	0.0	.	80	.	.	Atlas-SNP
HSPH1	10808	hgsc.bcm.edu	hg19	13	31724104	31724104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	HSPH1	NM_006644	exon8	c.G1124T	p.G375V	GCACATCCTCTGG	.	68.0	56.0	118.0	0.0	.	65	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77842001	77842001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	MYCBP2	NM_015057	exon8	c.G1332T	p.E444D	ATCTTGCTCCAGT	.	191.0	72.0	100.0	0.0	.	1029	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578402	7578402	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	TP53_ENST00000545858,NS,adenocarcinoma,-1,1	TP53	NM_000546	exon5	c.C528G	p.C176W	GTGGGGGCAGCGC	.	72.0	8.0	132.0	1.0	.	33396	.	.	Atlas-SNP
ARHGAP44	9912	hgsc.bcm.edu	hg19	17	12883408	12883408	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	ARHGAP44	NM_014859	exon19	c.T1797C	p.S599S	AGGCTCTGCACAG	.	116.0	40.0	149.0	0.0	.	55	.	.	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	hg19	17	29159374	29159374	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	ATAD5	NM_024857	exon1	c.G9A	p.G3G	GGTGGGGGTCCTG	.	76.0	24.0	52.0	0.0	.	150	.	.	Atlas-SNP
LRRC37A3	374819	hgsc.bcm.edu	hg19	17	62856309	62856309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	LRRC37A3	NM_199340	exon11	c.C3955A	p.P1319T	CCTTGGGTGTTCT	.	191.0	49.0	82.0	0.0	.	75	.	.	Atlas-SNP
CD7	924	hgsc.bcm.edu	hg19	17	80275365	80275365	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	CD7	NM_006137	exon1	c.G7C	p.G3R	GAGGCCCGGCCAT	.	317.0	18.0	182.0	0.0	.	25	.	.	Atlas-SNP
TTC39C	125488	hgsc.bcm.edu	hg19	18	21644129	21644129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	TTC39C	NM_001135993	exon2	c.G193A	p.G65R	AGTTTTGGAGCCA	.	73.0	38.0	92.0	0.0	.	83	.	.	Atlas-SNP
WDR7	23335	hgsc.bcm.edu	hg19	18	54426112	54426112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	WDR7	NM_052834	exon16	c.A2776G	p.T926A	CCAAGCACCCCAG	.	70.0	10.0	81.0	0.0	.	166	.	.	Atlas-SNP
ZNF781	163115	hgsc.bcm.edu	hg19	19	38160324	38160324	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	ZNF781	NM_152605	exon4	c.G726T	p.L242L	TAAAATCAGAAAC	.	72.0	41.0	55.0	0.0	.	66	.	.	Atlas-SNP
YIF1B	90522	hgsc.bcm.edu	hg19	19	38798281	38798281	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	YIF1B	NM_001039672	exon6	c.C651A	p.L217L	GGTGGTGAGGTCG	.	142.0	7.0	144.0	0.0	.	47	.	.	Atlas-SNP
SLC8A2	6543	hgsc.bcm.edu	hg19	19	47951333	47951333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	SLC8A2	NM_015063	exon4	c.G1496A	p.G499D	CGCCCGCCGCCGT	.	117.0	44.0	96.0	0.0	.	77	.	.	Atlas-SNP
RRBP1	6238	hgsc.bcm.edu	hg19	20	17640636	17640636	+	Missense_Mutation	SNP	C	C	A	rs141391805	alternate_allele	TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	RRBP1	NM_004587	exon2	c.G517T	p.A173S	TGGGAGCAGTTTC	.	77.0	29.0	70.0	0.0	.	157	.	C|1.000;T|0.000	Atlas-SNP
N6AMT1	29104	hgsc.bcm.edu	hg19	21	30257545	30257545	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	N6AMT1	NM_182749	exon1	c.C123A	p.A41A	CAGTTCGGCAGCC	.	226.0	15.0	191.0	0.0	.	31	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53603872	53603872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	HUWE1	NM_031407	exon44	c.G5872A	p.A1958T	CTGGAGCATGGTA	.	85.0	70.0	85.0	0.0	.	724	.	.	Atlas-SNP
RGAG1	57529	hgsc.bcm.edu	hg19	X	109697300	109697300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	RGAG1	NM_020769	exon3	c.T3455C	p.L1152S	ACCTCTTAGAAGA	.	258.0	21.0	178.0	0.0	.	168	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13333	13333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	.	ENST00000361567	exon1	c.G997A	p.A333T	ACCCACGCCTTCT	.	29.0	29.0	18.0	0.0	.	.	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14603	14603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	.	ENST00000361681	exon1	c.C71T	p.S24F	ATAGGAGAAGGCT	.	197.0	181.0	149.0	0.0	.	.	.	.	Atlas-SNP
TULP4	56995	hgsc.bcm.edu	hg19	6	158922879	158922890	+	In_Frame_Del	DEL	GACAGCTGTAGG	GACAGCTGTAGG	-	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	GACAGCTGTAGG	GACAGCTGTAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	TULP4,NS,carcinoma,0,1	TULP4	NM_020245	exon13	c.2183_2194del	p.728_732del	.	.	97.0	27.0	105.0	0.0	.	137	.	.	Atlas-INDEL
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77763751	77763752	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	ZFHX4	NM_024721	exon10	c.4594_4595insAA	p.E1532fs	.	.	167.0	18.0	176.0	0.0	.	878	.	.	Atlas-INDEL
RB1	5925	hgsc.bcm.edu	hg19	13	48878060	48878103	+	Frame_Shift_Del	DEL	AACCCCCCGAAAAACGGCCGCCACCGCCGCCGCTGCCGCCGCGG	AACCCCCCGAAAAACGGCCGCCACCGCCGCCGCTGCCGCCGCGG	-	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	AACCCCCCGAAAAACGGCCGCCACCGCCGCCGCTGCCGCCGCGG	AACCCCCCGAAAAACGGCCGCCACCGCCGCCGCTGCCGCCGCGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	RB1	NM_000321	exon1	c.11_54del	p.4_18del	.	.	429.0	235.0	977.0	0.0	.	1068	.	.	Atlas-INDEL
SERPINE2	5270	hgsc.bcm.edu	hg19	2	224847396	224847399	+	Splice_Site	DEL	TACT	TACT	-	novel		TCGA-DD-AADW-01A-11D-A38X-10	TCGA-DD-AADW-10A-01D-A38X-10	TACT	TACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	40648214-724a-4710-b3d8-5ec9cd6d5fe9	d1383588-3279-4d21-b931-75e2df11adc8	.	SERPINE2	.	.	.	.	.	.	92.0	14.0	79.0	0.0	.	103	.	.	Atlas-INDEL