Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
FBXO42	54455	hgsc.bcm.edu	hg19	1	16577701	16577701	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	FBXO42	NM_018994	exon10	c.C1618G	p.P540A	GAGGTGGGGTATG	.	74.0	39.0	92.0	0.0	.	53	.	.	Atlas-SNP
RCC2	55920	hgsc.bcm.edu	hg19	1	17743015	17743015	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	RCC2,NS,carcinoma,0,1	RCC2	NM_001136204	exon7	c.C987T	p.N329N	AACCACGTTTGGT	.	88.0	24.0	74.0	0.0	.	46	.	.	Atlas-SNP
KIF17	57576	hgsc.bcm.edu	hg19	1	21036196	21036196	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	KIF17	NM_001122819	exon4	c.G606C	p.L202L	GTTCATCAGCGTG	.	147.0	8.0	126.0	0.0	.	130	.	.	Atlas-SNP
PDIK1L	149420	hgsc.bcm.edu	hg19	1	26449068	26449068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	PDIK1L	NM_001243532	exon3	c.A1026G	p.X342W	AACGTGACACATA	.	82.0	23.0	67.0	0.0	.	19	.	.	Atlas-SNP
ORC1	4998	hgsc.bcm.edu	hg19	1	52863529	52863529	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ORC1	NM_004153	exon4	c.A230T	p.D77V	GGAGGATCAGAGT	.	228.0	103.0	185.0	0.0	.	79	.	.	Atlas-SNP
RAVER2	55225	hgsc.bcm.edu	hg19	1	65278505	65278505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	RAVER2	NM_018211	exon10	c.A1726G	p.S576G	TTGGCAAGTGTGT	.	74.0	35.0	85.0	0.0	.	56	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65332551	65332551	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	JAK1	NM_002227	exon7	c.A988T	p.N330Y	TTACATTTGGTTT	.	73.0	31.0	65.0	0.0	.	209	.	.	Atlas-SNP
C1orf173	127254	hgsc.bcm.edu	hg19	1	75112352	75112352	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	C1orf173	NM_001002912	exon3	c.A242C	p.E81A	TTTACCTCCATAT	.	414.0	182.0	345.0	0.0	.	380	.	.	Atlas-SNP
MSH4	4438	hgsc.bcm.edu	hg19	1	76345739	76345739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MSH4	NM_002440	exon13	c.C1682T	p.S561F	AGATTTCTAAAGT	.	443.0	115.0	381.0	0.0	.	147	.	.	Atlas-SNP
SYDE2	84144	hgsc.bcm.edu	hg19	1	85624884	85624884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SYDE2	NM_032184	exon7	c.A3134T	p.Q1045L	GACTTCTGCTCTG	.	117.0	55.0	94.0	0.0	.	135	.	.	Atlas-SNP
CLCA2	9635	hgsc.bcm.edu	hg19	1	86904629	86904629	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	CLCA2	NM_006536	exon7	c.T1043A	p.F348Y	ATACCTTCGTGGG	.	117.0	6.0	102.0	0.0	.	102	.	.	Atlas-SNP
INSRR	3645	hgsc.bcm.edu	hg19	1	156814633	156814633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	INSRR	NM_014215	exon13	c.G2440A	p.E814K	CAGCCTCTCCTGC	.	112.0	56.0	80.0	0.0	.	309	.	.	Atlas-SNP
SLAMF7	57823	hgsc.bcm.edu	hg19	1	160721146	160721146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SLAMF7	NM_021181	exon5	c.G781C	p.E261Q	ATTGAAGAGAAGA	.	146.0	6.0	102.0	0.0	.	54	.	.	Atlas-SNP
LAX1	54900	hgsc.bcm.edu	hg19	1	203743135	203743135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	LAX1	NM_017773	exon5	c.A523G	p.N175D	TGCATCAATGTCA	.	174.0	60.0	105.0	0.0	.	48	.	.	Atlas-SNP
KIDINS220	57498	hgsc.bcm.edu	hg19	2	8871742	8871742	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	KIDINS220	NM_020738	exon30	c.C4424G	p.P1475R	GTGATAGGATCCA	.	184.0	8.0	171.0	0.0	.	136	.	.	Atlas-SNP
CCDC164	92749	hgsc.bcm.edu	hg19	2	26667692	26667692	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	CCDC164	NM_145038	exon10	c.C1272T	p.H424H	CATCCACACCCAT	.	93.0	21.0	96.0	0.0	.	84	.	.	Atlas-SNP
LHCGR	3973	hgsc.bcm.edu	hg19	2	48915497	48915497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	LHCGR,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	LHCGR	NM_000233	exon11	c.T1439C	p.L480S	TGTCTTAATCGCA	.	88.0	37.0	89.0	0.0	.	154	.	.	Atlas-SNP
SLC20A1	6574	hgsc.bcm.edu	hg19	2	113404985	113404985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SLC20A1	NM_005415	exon3	c.T419G	p.F140C	TTGGTTTCTCCCT	.	200.0	72.0	226.0	0.0	.	59	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168096409	168096409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	XIRP2	NM_001199143	exon7	c.G1002T	p.Q334H	CAGCCAGGAAATG	.	389.0	23.0	644.0	0.0	.	914	.	.	Atlas-SNP
ORMDL1	94101	hgsc.bcm.edu	hg19	2	190636618	190636618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ORMDL1	NM_016467	exon5	c.G337A	p.A113T	AACTTGCCAGAAA	.	111.0	52.0	94.0	0.0	.	8	.	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198266800	198266800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	SF3B1,NS,haematopoietic_neoplasm,0,1	SF3B1	NM_012433	exon15	c.C2132T	p.A711V	GCCAAGGCAGCAA	.	327.0	146.0	282.0	0.0	.	1038	.	.	Atlas-SNP
HSPD1	3329	hgsc.bcm.edu	hg19	2	198358073	198358073	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	HSPD1	NM_002156	exon7	c.G844C	p.A282P	TTAGAGCTTCTCC	.	164.0	47.0	187.0	0.0	.	68	.	.	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	hg19	3	10074603	10074603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	FANCD2	NM_001018115	exon3	c.T152G	p.L51R	TAAAGCTTCTTAA	.	259.0	16.0	223.0	0.0	.	253	.	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	hg19	3	52553292	52553292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	STAB1	NM_015136	exon49	c.C5047T	p.L1683F	ATATACCTCAATG	.	96.0	9.0	89.0	0.0	.	178	.	.	Atlas-SNP
TOMM70A	9868	hgsc.bcm.edu	hg19	3	100086936	100086936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	TOMM70A	NM_014820	exon11	c.A1625G	p.N542S	CATTTATTGTCAA	.	90.0	25.0	100.0	0.0	.	65	.	.	Atlas-SNP
CD80	941	hgsc.bcm.edu	hg19	3	119263535	119263535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	CD80	NM_005191	exon3	c.G280A	p.D94N	TGATATCAAAGAT	.	146.0	8.0	122.0	0.0	.	35	.	.	Atlas-SNP
SMC4	10051	hgsc.bcm.edu	hg19	3	160148414	160148414	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SMC4	NM_005496	exon18	c.C2823G	p.V941V	CTCTGTCTTGCGT	.	278.0	107.0	258.0	0.0	.	135	.	.	Atlas-SNP
CSN1S1	1446	hgsc.bcm.edu	hg19	4	70804905	70804905	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	CSN1S1	NM_001890	exon10	c.C255A	p.S85S	GGAATCCAGCATC	.	141.0	32.0	185.0	0.0	.	20	.	.	Atlas-SNP
PPEF2	5470	hgsc.bcm.edu	hg19	4	76805789	76805789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	PPEF2	NM_006239	exon8	c.A704G	p.H235R	TTAAGATGGAACT	.	63.0	34.0	94.0	0.0	.	108	.	.	Atlas-SNP
SPOCK3	50859	hgsc.bcm.edu	hg19	4	167658664	167658664	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SPOCK3	NM_016950	exon11	c.T1095C	p.Y365Y	ATTTCCATATCTG	.	34.0	14.0	60.0	0.0	.	90	.	.	Atlas-SNP
MIER3	166968	hgsc.bcm.edu	hg19	5	56226567	56226567	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MIER3	NM_152622	exon9	c.A753G	p.L251L	TTCATATAATGCC	.	66.0	33.0	55.0	0.0	.	33	.	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66391445	66391445	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MAST4	NM_001164664	exon7	c.C854G	p.S285W	GCTGGTCGTTGGC	.	97.0	27.0	91.0	0.0	.	218	.	.	Atlas-SNP
F2RL1	2150	hgsc.bcm.edu	hg19	5	76129080	76129080	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	F2RL1	NM_005242	exon2	c.C648T	p.I216I	GACCATCTTCATT	.	105.0	42.0	113.0	0.0	.	46	.	.	Atlas-SNP
RASGRF2	5924	hgsc.bcm.edu	hg19	5	80513290	80513290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	RASGRF2	NM_006909	exon25	c.A3550C	p.M1184L	ATGAGAATGGTAG	.	80.0	25.0	96.0	0.0	.	165	.	.	Atlas-SNP
ARRDC3	57561	hgsc.bcm.edu	hg19	5	90670042	90670042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ARRDC3	NM_020801	exon6	c.G922A	p.V308I	CGATGACAAGTGG	.	259.0	76.0	276.0	0.0	.	56	.	.	Atlas-SNP
MYOT	9499	hgsc.bcm.edu	hg19	5	137221803	137221803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MYOT	NM_006790	exon8	c.A1091G	p.D364G	AGGGAGATTCAGT	.	586.0	244.0	443.0	0.0	.	50	.	.	Atlas-SNP
GNPDA1	10007	hgsc.bcm.edu	hg19	5	141385881	141385881	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	GNPDA1	NM_005471	exon4	c.A237G	p.R79R	GTGGTCTCGAGGA	.	84.0	43.0	56.0	0.0	.	16	.	.	Atlas-SNP
DSP	1832	hgsc.bcm.edu	hg19	6	7583810	7583810	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	DSP	NM_004415	exon24	c.A6315G	p.V2105V	GACAGTATCTGTT	.	139.0	9.0	98.0	0.0	.	306	.	.	Atlas-SNP
HIST1H2AG	8969	hgsc.bcm.edu	hg19	6	27100855	27100855	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	HIST1H2AG	NM_021064	exon1	c.C5G	p.S2C	CTATGTCTGGACG	.	113.0	74.0	89.0	0.0	.	37	.	.	Atlas-SNP
ANKS1A	23294	hgsc.bcm.edu	hg19	6	34935067	34935067	+	Silent	SNP	C	C	A	rs147758055	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ANKS1A	NM_015245	exon2	c.C249A	p.P83P	CACACCCCTGCAC	.	130.0	7.0	65.0	0.0	.	123	.	C|0.998;G|0.002	Atlas-SNP
TINAG	27283	hgsc.bcm.edu	hg19	6	54219431	54219431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	TINAG	NM_014464	exon9	c.C1247T	p.T416I	AACTCACTGGGTA	.	385.0	196.0	300.0	0.0	.	102	.	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	hg19	6	84269885	84269885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SNAP91	NM_001242792	exon27	c.G2569A	p.V857I	ACATGACCGGCTG	.	172.0	93.0	216.0	0.0	.	199	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	4153005	4153005	+	Silent	SNP	C	C	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SDK1	NM_152744	exon24	c.C3519G	p.P1173P	CCCACCCGACGTG	.	55.0	15.0	30.0	0.0	.	361	.	.	Atlas-SNP
OCM	654231	hgsc.bcm.edu	hg19	7	5923521	5923521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	OCM	NM_001097622	exon3	c.G195T	p.K65N	CTGTAGGTTTTTC	.	159.0	62.0	143.0	0.0	.	13	.	.	Atlas-SNP
C1GALT1	56913	hgsc.bcm.edu	hg19	7	7278123	7278123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	C1GALT1	NM_020156	exon3	c.A458G	p.Y153C	TTCAGTATGTTCA	.	224.0	98.0	200.0	0.0	.	24	.	.	Atlas-SNP
PPP1R9A	55607	hgsc.bcm.edu	hg19	7	94897973	94897973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	PPP1R9A	NM_001166160	exon13	c.A2777G	p.Y926C	GACTGTATGATAG	.	133.0	50.0	118.0	0.0	.	264	.	.	Atlas-SNP
MCM7	4176	hgsc.bcm.edu	hg19	7	99695366	99695366	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MCM7	NM_005916	exon9	c.G988C	p.E330Q	AATCCTCCTCTGT	.	94.0	54.0	60.0	0.0	.	136	.	.	Atlas-SNP
C7orf43	55262	hgsc.bcm.edu	hg19	7	99755553	99755553	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	C7orf43	NM_018275	exon2	c.G420T	p.V140V	TTCCTCCACAGGC	.	120.0	57.0	122.0	0.0	.	28	.	.	Atlas-SNP
CNTNAP2	26047	hgsc.bcm.edu	hg19	7	146536812	146536812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	CNTNAP2	NM_014141	exon3	c.G218A	p.G73E	CTGGGGGATGGTC	.	103.0	53.0	75.0	0.0	.	392	.	.	Atlas-SNP
PTPRN2	5799	hgsc.bcm.edu	hg19	7	158109583	158109583	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	PTPRN2	NM_130843	exon3	c.T205A	p.F69I	GGTAAAAGTCCAT	.	101.0	17.0	71.0	0.0	.	243	.	.	Atlas-SNP
ADAM18	8749	hgsc.bcm.edu	hg19	8	39564320	39564320	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ADAM18	NM_014237	exon18	c.T1914C	p.N638N	TAATAATTTTGGT	.	68.0	20.0	103.0	0.0	.	169	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131833593	131833593	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ADCY8	NM_001115	exon13	c.C2749T	p.Q917X	CCTGCTGTCCATG	.	100.0	50.0	103.0	0.0	.	291	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	41.0	8.0	43.0	1.0	.	384	.	.	Atlas-SNP
TUBB8	347688	hgsc.bcm.edu	hg19	10	95177	95177	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	TUBB8	NM_177987	exon1	c.T2G	p.M1R	TCCCTCATGGCCA	.	174.0	72.0	123.0	0.0	.	62	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17147481	17147481	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	CUBN	NM_001081	exon11	c.A1205T	p.H402L	CAGGGGTGACTTA	.	100.0	16.0	98.0	0.0	.	515	.	.	Atlas-SNP
ZSWIM8	23053	hgsc.bcm.edu	hg19	10	75558879	75558879	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	.	NM_015037	exon21	c.T4296C	p.T1432T	GCAAACTGCAGGT	.	121.0	54.0	131.0	0.0	.	.	.	.	Atlas-SNP
DLG5	9231	hgsc.bcm.edu	hg19	10	79581096	79581096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	DLG5	NM_004747	exon15	c.G3146T	p.S1049I	AGGGCGCTCGGGG	.	62.0	9.0	42.0	0.0	.	154	.	.	Atlas-SNP
CALHM1	255022	hgsc.bcm.edu	hg19	10	105215375	105215375	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	CALHM1	NM_001001412	exon2	c.A685T	p.K229X	AGAGCTTGCGCTC	.	91.0	35.0	86.0	0.0	.	33	.	.	Atlas-SNP
FANCF	2188	hgsc.bcm.edu	hg19	11	22646708	22646708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	FANCF	NM_022725	exon1	c.C649T	p.R217W	GGGGCCGACGAGA	.	72.0	21.0	60.0	0.0	.	24	.	.	Atlas-SNP
CD44	960	hgsc.bcm.edu	hg19	11	35232954	35232954	+	Missense_Mutation	SNP	A	A	G	rs373762543	alternate_allele	TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	CD44	NM_000610	exon14	c.A1768G	p.T590A	GCAGTTACTGTTG	.	173.0	44.0	165.0	0.0	.	48	.	.	Atlas-SNP
LRRC4C	57689	hgsc.bcm.edu	hg19	11	40137179	40137179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	LRRC4C,NS,carcinoma,0,1	LRRC4C	NM_001258419	exon7	c.G664T	p.D222Y	GCTCATCTAGTTT	.	142.0	60.0	121.0	1.0	.	190	.	.	Atlas-SNP
SDHAF2	54949	hgsc.bcm.edu	hg19	11	61205156	61205156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SDHAF2	NM_017841	exon2	c.A96C	p.R32S	ATTCAGACGCTTC	.	112.0	55.0	100.0	0.0	.	26	.	.	Atlas-SNP
MMP1	4312	hgsc.bcm.edu	hg19	11	102661252	102661252	+	Missense_Mutation	SNP	C	C	T	rs181629882	bycluster;by1000genomes;alternate_allele	TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	MMP1,NS,carcinoma,0,1	MMP1	NM_002421	exon10	c.G1301A	p.G434E	AAAAATCCTAGAA	.	127.0	54.0	102.0	0.0	.	74	.	C|1.000;A|0.000	Atlas-SNP
BUD13	84811	hgsc.bcm.edu	hg19	11	116633446	116633446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	BUD13	NM_032725	exon4	c.A859G	p.S287G	TACCACTTTTGGT	.	122.0	53.0	124.0	0.0	.	41	.	.	Atlas-SNP
ETS1	2113	hgsc.bcm.edu	hg19	11	128332286	128332286	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ETS1	NM_001143820	exon10	c.G1428C	p.M476I	GTCCAGCATGGCG	.	134.0	64.0	114.0	0.0	.	123	.	.	Atlas-SNP
KIF21A	55605	hgsc.bcm.edu	hg19	12	39726081	39726081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	KIF21A	NM_001173464	exon21	c.A2986G	p.I996V	AATCGATATTAGC	.	106.0	8.0	100.0	0.0	.	238	.	.	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	hg19	12	46320992	46320992	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SCAF11	NM_004719	exon11	c.A2492C	p.Q831P	GGTGATTGAGACT	.	73.0	5.0	69.0	0.0	.	145	.	.	Atlas-SNP
LLPH	84298	hgsc.bcm.edu	hg19	12	66522717	66522717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	LLPH	NM_032338	exon2	c.A170G	p.H57R	TGGCAATGTTTGG	.	313.0	91.0	301.0	0.0	.	25	.	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72004331	72004331	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ZFC3H1	NM_144982	exon35	c.A5847G	p.E1949E	TGATGCTTCAAAC	.	87.0	20.0	82.0	0.0	.	172	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	hg19	14	23532224	23532224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ACIN1	NM_014977	exon14	c.A2971G	p.I991V	TGGTAATGGAAAC	.	141.0	47.0	109.0	0.0	.	147	.	.	Atlas-SNP
FSCB	84075	hgsc.bcm.edu	hg19	14	44974177	44974177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	FSCB	NM_032135	exon1	c.C2014A	p.P672T	GTGGAGGCTGAAC	.	67.0	14.0	74.0	0.0	.	173	.	.	Atlas-SNP
TRMT5	57570	hgsc.bcm.edu	hg19	14	61446462	61446462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	TRMT5	NM_020810	exon2	c.G154A	p.G52S	TTTGACCCAATAA	.	78.0	16.0	97.0	0.0	.	44	.	.	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	hg19	15	49031451	49031451	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	CEP152	NM_001194998	exon27	c.T4128C	p.V1376V	TTTTTTAACTGCA	.	71.0	29.0	67.0	0.0	.	145	.	.	Atlas-SNP
MESP2	145873	hgsc.bcm.edu	hg19	15	90320448	90320448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MESP2	NM_001039958	exon1	c.C860T	p.P287L	CAGAGCCCCGGAA	.	95.0	4.0	97.0	0.0	.	20	.	.	Atlas-SNP
MEF2A	4205	hgsc.bcm.edu	hg19	15	100185917	100185917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MEF2A	NM_001130926	exon3	c.A206G	p.Y69C	TCAAGTATACAGA	.	200.0	83.0	186.0	0.0	.	138	.	.	Atlas-SNP
WDR90	197335	hgsc.bcm.edu	hg19	16	712038	712038	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	WDR90	NM_145294	exon32	c.G4012T	p.E1338X	TCCTGGGAGGCGG	.	39.0	15.0	34.0	0.0	.	107	.	.	Atlas-SNP
PDXDC1	23042	hgsc.bcm.edu	hg19	16	15125629	15125629	+	Silent	SNP	A	A	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	PDXDC1	NM_015027	exon17	c.A1437T	p.V479V	GCTCGTAGCCTGC	.	116.0	12.0	97.0	0.0	.	59	.	.	Atlas-SNP
ERN2	10595	hgsc.bcm.edu	hg19	16	23713784	23713784	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ERN2	NM_033266	exon10	c.A1152G	p.R384R	GCCCTCTCGCTCT	.	40.0	6.0	40.0	0.0	.	131	.	.	Atlas-SNP
PMFBP1	83449	hgsc.bcm.edu	hg19	16	72170637	72170637	+	Missense_Mutation	SNP	C	C	T	rs144745394		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	PMFBP1	NM_031293	exon8	c.G1000A	p.V334M	GTTCCACGCGCAG	.	88.0	25.0	90.0	0.0	.	101	.	C|1.000;T|0.000	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7579369	7579369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	TP53_ENST00000413465,colon,carcinoma,-2,6	TP53	NM_000546	exon4	c.C318G	p.S106R	ACCGTAGCTGCCC	.	109.0	79.0	221.0	0.0	.	33396	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29654655	29654655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	NF1	NM_001042492	exon38	c.A5407G	p.I1803V	TTAACCATTGCAA	.	104.0	55.0	164.0	0.0	.	1586	.	.	Atlas-SNP
KRT40	125115	hgsc.bcm.edu	hg19	17	39140078	39140078	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	KRT40	NM_182497	exon4	c.447+1G>A	.	CACAGACCTTTTG	.	74.0	5.0	69.0	0.0	.	27	.	.	Atlas-SNP
ATXN7L3	56970	hgsc.bcm.edu	hg19	17	42275081	42275081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ATXN7L3	NM_020218	exon2	c.A69G	p.I23M	CGCGTATATCTCC	.	155.0	58.0	76.0	0.0	.	31	.	.	Atlas-SNP
NPEPPS	9520	hgsc.bcm.edu	hg19	17	45682765	45682765	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	NPEPPS	NM_006310	exon17	c.A1942C	p.N648H	GAGCCCAATTATA	.	130.0	59.0	140.0	0.0	.	59	.	.	Atlas-SNP
FAM117A	81558	hgsc.bcm.edu	hg19	17	47797246	47797246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	FAM117A	NM_030802	exon5	c.C584G	p.P195R	AAGCTGGGAGGGG	.	20.0	12.0	17.0	0.0	.	45	.	.	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	hg19	17	48746768	48746768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ABCC3	NM_003786	exon17	c.A2120G	p.E707G	TTCAGGAAAACGT	.	107.0	6.0	99.0	0.0	.	138	.	.	Atlas-SNP
DNAI2	64446	hgsc.bcm.edu	hg19	17	72285824	72285824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	DNAI2	NM_001172810	exon5	c.T559A	p.F187I	TTGGATTTTCAGC	.	104.0	43.0	96.0	0.0	.	102	.	.	Atlas-SNP
RNF126	55658	hgsc.bcm.edu	hg19	19	651657	651657	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	RNF126	NM_194460	exon4	c.A397T	p.T133S	GCCGCGTGGTGAG	.	72.0	32.0	72.0	0.0	.	15	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9057497	9057497	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MUC16	NM_024690	exon3	c.C29949T	p.T9983T	TGAGTGGGTCCTT	.	170.0	68.0	122.0	0.0	.	4315	.	.	Atlas-SNP
ZNF799	90576	hgsc.bcm.edu	hg19	19	12502155	12502155	+	Missense_Mutation	SNP	T	T	G	rs201335235		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ZNF799	NM_001080821	exon4	c.A1057C	p.K353Q	GACTTTTCAGTGA	.	82.0	8.0	60.0	0.0	.	111	.	.	Atlas-SNP
PRKACA	5566	hgsc.bcm.edu	hg19	19	14208652	14208652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	PRKACA	NM_002730	exon6	c.A470G	p.Y157C	TGCAGATACTCAA	.	173.0	46.0	128.0	0.0	.	65	.	.	Atlas-SNP
MAP1S	55201	hgsc.bcm.edu	hg19	19	17837405	17837405	+	Silent	SNP	C	C	T	rs374141963		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MAP1S	NM_018174	exon5	c.C1212T	p.G404G	CGCCGGCGCCGAG	.	70.0	16.0	75.0	0.0	.	74	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22952081	22952081	+	Nonsense_Mutation	SNP	C	C	A	rs149345966	bycluster;by1000genomes;alternate_allele	TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ZNF99	NM_001080409	exon2	c.G49T	p.E17X	GCCACTCCTCCAG	.	261.0	96.0	219.0	0.0	.	273	.	C|0.995;T|0.005	Atlas-SNP
LRFN1	57622	hgsc.bcm.edu	hg19	19	39805143	39805143	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	LRFN1	NM_020862	exon1	c.C834T	p.P278P	GTGTTCGGGCGTG	.	87.0	43.0	82.0	0.0	.	59	.	.	Atlas-SNP
MYBPC2	4606	hgsc.bcm.edu	hg19	19	50958529	50958529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MYBPC2	NM_004533	exon19	c.A2179G	p.N727D	AGCATGAACACCA	.	101.0	33.0	97.0	0.0	.	103	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56028598	56028598	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SSC5D	NM_001144950	exon14	c.G2955T	p.P985P	TTCCCCGAGGAAA	.	51.0	18.0	52.0	0.0	.	65	.	.	Atlas-SNP
XRN2	22803	hgsc.bcm.edu	hg19	20	21329027	21329027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	XRN2	NM_012255	exon19	c.A1822T	p.N608Y	AGTGGTAATTTTC	.	93.0	26.0	83.0	0.0	.	90	.	.	Atlas-SNP
MPPED1	758	hgsc.bcm.edu	hg19	22	43898542	43898542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	MPPED1	NM_001044370	exon6	c.C767T	p.P256L	GGGTCCCCAAGAA	.	85.0	34.0	46.0	0.0	.	59	.	.	Atlas-SNP
AKAP17A	8227	hgsc.bcm.edu	hg19	X	1720179	1720179	+	Missense_Mutation	SNP	G	G	C	rs199895489	bycluster;by1000genomes;alternate_allele	TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	AKAP17A	NM_005088	exon5	c.G1780C	p.G594R	GGAGACGGGCTTG	.	73.0	26.0	54.0	0.0	.	46	.	G|1.000;A|0.000	Atlas-SNP
SYN1	6853	hgsc.bcm.edu	hg19	X	47479089	47479089	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	SYN1	NM_006950	exon1	c.T39C	p.F13F	GGCCATAAAGTTG	.	722.0	85.0	649.0	0.0	.	84	.	.	Atlas-SNP
ARMCX3	51566	hgsc.bcm.edu	hg19	X	100880299	100880299	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	ARMCX3	NM_016607	exon5	c.C330T	p.S110S	GGCTTCCCCCAAT	.	82.0	42.0	83.0	0.0	.	33	.	.	Atlas-SNP
DDX3Y	8653	hgsc.bcm.edu	hg19	Y	15029320	15029320	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	DDX3Y	NM_004660	exon16	c.G1769C	p.R590T	GTAATAGATTCAG	.	129.0	76.0	91.0	0.0	.	13	.	.	Atlas-SNP
RASGRF2	5924	hgsc.bcm.edu	hg19	5	80513281	80513281	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	RASGRF2	NM_006909	exon25	c.3540delC	p.S1180fs	.	.	82.0	25.0	105.0	0.0	.	165	.	.	Atlas-INDEL
TMEM128	85013	hgsc.bcm.edu	hg19	4	4248013	4248014	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	TMEM128	NM_032927	exon2	c.83_84insT	p.S28fs	.	.	128.0	48.0	171.0	0.0	.	12	.	.	Atlas-INDEL
FANCF	2188	hgsc.bcm.edu	hg19	11	22647195	22647195	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AADV-01A-11D-A38X-10	TCGA-DD-AADV-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4a967238-8845-4088-bf2c-df021fad1a5e	7fedcbf5-4417-4700-b02a-a4d71e5e7e33	.	FANCF	NM_022725	exon1	c.163delC	p.R55fs	.	.	150.0	40.0	161.0	0.0	.	24	.	.	Atlas-INDEL