Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ATP13A2 23400 hgsc.bcm.edu hg19 1 17318784 17318784 + Silent SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ATP13A2 NM_022089 exon18 c.C1959A p.V653V GCCTTTGACGTAG . 84.0 60.0 97.0 0.0 . 85 . . Atlas-SNP KDM1A 23028 hgsc.bcm.edu hg19 1 23409732 23409732 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . KDM1A NM_001009999 exon21 c.C2506T p.H836Y ACAGTGCATGGTG . 134.0 104.0 104.0 0.0 . 49 . . Atlas-SNP ZMYM6 9204 hgsc.bcm.edu hg19 1 35453298 35453298 + Missense_Mutation SNP T T G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ZMYM6 NM_007167 exon16 c.A3385C p.S1129R GGAGACTTAAATT . 398.0 23.0 481.0 0.0 . 110 . . Atlas-SNP GRIK3 2899 hgsc.bcm.edu hg19 1 37282713 37282713 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . GRIK3 NM_000831 exon13 c.C2039T p.T680I ATTTTGGTTTGCT . 147.0 14.0 162.0 0.0 . 195 . . Atlas-SNP EIF2B3 8891 hgsc.bcm.edu hg19 1 45407298 45407298 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd EIF2B3,right_upper_lobe,carcinoma,0,1 EIF2B3 NM_020365 exon4 c.G334A p.V112I AGGCAACGTCTGT . 175.0 10.0 177.0 0.0 . 43 . . Atlas-SNP PTGER3 5733 hgsc.bcm.edu hg19 1 71512486 71512486 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PTGER3 NM_001126044 exon1 c.C775T p.R259C GGCAGCGGGACAC . 94.0 63.0 102.0 0.0 . 246 . . Atlas-SNP TTLL7 79739 hgsc.bcm.edu hg19 1 84417572 84417572 + Missense_Mutation SNP T T A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . TTLL7 NM_024686 exon3 c.A113T p.K38M GTTCCCTTCTTTT . 203.0 10.0 200.0 0.0 . 93 . . Atlas-SNP VAV3 10451 hgsc.bcm.edu hg19 1 108185361 108185361 + Missense_Mutation SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd VAV3,caecum,carcinoma,0,1 VAV3 NM_006113 exon20 c.G1794T p.Q598H AATGACCTGCATC . 110.0 6.0 142.0 0.0 . 176 . . Atlas-SNP PRR9 574414 hgsc.bcm.edu hg19 1 153190630 153190630 + Missense_Mutation SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PRR9 NM_001195571 exon2 c.A10T p.S4C TCCTTCAGTGAGC . 142.0 7.0 153.0 0.0 . 1 . . Atlas-SNP UBAP2L 9898 hgsc.bcm.edu hg19 1 154226506 154226506 + Missense_Mutation SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . UBAP2L NM_001127320 exon15 c.A1795T p.T599S ACACAGACTCGGC . 108.0 51.0 115.0 0.0 . 197 . . Atlas-SNP INSRR 3645 hgsc.bcm.edu hg19 1 156816468 156816468 + Silent SNP G G C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . INSRR NM_014215 exon8 c.C1653G p.P551P GCTTAGGGGCAGC . 124.0 48.0 122.0 0.0 . 309 . . Atlas-SNP PRDX6 9588 hgsc.bcm.edu hg19 1 173455515 173455515 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PRDX6 NM_004905 exon4 c.G521A p.R174K AAAAAAGGGTTGC . 154.0 61.0 149.0 0.0 . 20 . . Atlas-SNP LEMD1 93273 hgsc.bcm.edu hg19 1 205388368 205388368 + Silent SNP A A G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . LEMD1 NM_001001552 exon3 c.T195C p.D65D GCTGTCATCACTG . 94.0 32.0 90.0 0.0 . 21 . . Atlas-SNP MIA3 375056 hgsc.bcm.edu hg19 1 222801611 222801611 + Missense_Mutation SNP A A G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MIA3 NM_198551 exon4 c.A1049G p.Y350C AGAAATATCCAAC . 299.0 112.0 280.0 0.0 . 167 . . Atlas-SNP PXDN 7837 hgsc.bcm.edu hg19 2 1642646 1642646 + Missense_Mutation SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PXDN NM_012293 exon21 c.A4178G p.Q1393R GTCTTCTGCATTT . 73.0 30.0 78.0 0.0 . 255 . . Atlas-SNP C2orf53 339779 hgsc.bcm.edu hg19 2 27360805 27360805 + Silent SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . C2orf53 NM_178553 exon3 c.C393A p.S131S AGGCTGGGAGGGA . 88.0 34.0 86.0 0.0 . 45 . . Atlas-SNP C2orf73 129852 hgsc.bcm.edu hg19 2 54587449 54587449 + Missense_Mutation SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . C2orf73 NM_001100396 exon5 c.C614A p.S205Y AACAGTCCAAAAA . 171.0 77.0 173.0 0.0 . 17 . . Atlas-SNP REV1 51455 hgsc.bcm.edu hg19 2 100050856 100050856 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . REV1 NM_001037872 exon8 c.C1376T p.P459L GCGCCAGGACGTA . 96.0 40.0 100.0 0.0 . 100 . . Atlas-SNP MYO7B 4648 hgsc.bcm.edu hg19 2 128366406 128366406 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MYO7B NM_001080527 exon22 c.C2767T p.P923S TTCCTCCCTGCCA . 211.0 99.0 158.0 0.0 . 359 . . Atlas-SNP NXPH2 11249 hgsc.bcm.edu hg19 2 139429158 139429158 + Silent SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . NXPH2 NM_007226 exon2 c.G129A p.L43L GCCGACCAACGTC . 143.0 57.0 112.0 0.0 . 63 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141739748 141739748 + Silent SNP T T A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . LRP1B NM_018557 exon18 c.A2868T p.T956T TTCATCTGTCTGG . 83.0 26.0 97.0 0.0 . 1315 . . Atlas-SNP MBD5 55777 hgsc.bcm.edu hg19 2 149267693 149267693 + Missense_Mutation SNP A A G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MBD5 NM_018328 exon14 c.A4402G p.M1468V GACAAAATGTCTG . 368.0 144.0 399.0 0.0 . 164 . . Atlas-SNP SCN1A 6323 hgsc.bcm.edu hg19 2 166868648 166868648 + Missense_Mutation SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . SCN1A NM_001165963 exon19 c.T3850A p.W1284R AACACCAGGCATT . 285.0 105.0 330.0 0.0 . 641 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168115577 168115577 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . XIRP2 NM_001199143 exon11 c.G2620A p.V874M AACACCGTGAAAA . 488.0 185.0 550.0 1.0 . 914 . . Atlas-SNP UBR3 130507 hgsc.bcm.edu hg19 2 170806382 170806382 + Missense_Mutation SNP T T G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . UBR3 NM_172070 exon23 c.T3352G p.L1118V GAAATTTTAATCC . 289.0 138.0 253.0 0.0 . 182 . . Atlas-SNP NABP1 64859 hgsc.bcm.edu hg19 2 192546742 192546742 + Nonsense_Mutation SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . . NM_001031716 exon3 c.G301T p.E101X ATTGGGGAGTAAG . 694.0 273.0 787.0 1.0 . . . . Atlas-SNP AOX1 316 hgsc.bcm.edu hg19 2 201521589 201521589 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . AOX1 NM_001159 exon27 c.C3100T p.L1034F ATTTATCTTGATG . 96.0 30.0 123.0 0.0 . 152 . . Atlas-SNP FN1 2335 hgsc.bcm.edu hg19 2 216261901 216261901 + Missense_Mutation SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . FN1 NM_212476 exon23 c.C3563A p.T1188N ACTCCAGTGTCAG . 93.0 32.0 104.0 0.0 . 521 . . Atlas-SNP GIGYF2 26058 hgsc.bcm.edu hg19 2 233709124 233709124 + Missense_Mutation SNP A A G rs371374687 TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . GIGYF2 NM_001103147 exon27 c.A3208G p.I1070V GGCTCTATAAATA . 144.0 59.0 138.0 0.0 . 288 . . Atlas-SNP UGT1A3 54659 hgsc.bcm.edu hg19 2 234638551 234638551 + Missense_Mutation SNP A A G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . UGT1A3 NM_019093 exon1 c.A779G p.D260G GAGGGGACTTTGT . 142.0 47.0 150.0 0.0 . 91 . . Atlas-SNP DENND6A 201627 hgsc.bcm.edu hg19 3 57646534 57646534 + Missense_Mutation SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . . NM_152678 exon7 c.G652T p.V218L CTGGCACTGGGGC . 1369.0 553.0 1511.0 1.0 . . . . Atlas-SNP EAF2 55840 hgsc.bcm.edu hg19 3 121573668 121573668 + Silent SNP A A C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . EAF2 NM_018456 exon3 c.A336C p.T112T AAAAACAAGGTAT . 693.0 267.0 729.0 0.0 . 26 . . Atlas-SNP MUC13 56667 hgsc.bcm.edu hg19 3 124635177 124635177 + Silent SNP A A G rs370885108 alternate_allele TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MUC13 NM_033049 exon6 c.T948C p.F316F GTTTAGAAAGTTG . 217.0 100.0 214.0 0.0 . 57 . . Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130380832 130380832 + Missense_Mutation SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . COL6A6 NM_001102608 exon34 c.T6182C p.I2061T CTTTTATTGGTCA . 133.0 49.0 111.0 0.0 . 497 . . Atlas-SNP ESYT3 83850 hgsc.bcm.edu hg19 3 138183192 138183192 + Silent SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ESYT3 NM_031913 exon9 c.G921A p.V307V GGGGGTGATCAGA . 63.0 23.0 74.0 0.0 . 64 . . Atlas-SNP CCDC39 339829 hgsc.bcm.edu hg19 3 180377348 180377348 + Silent SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . CCDC39 NM_181426 exon6 c.A630G p.A210A ATCTTGTGCTGCT . 123.0 49.0 177.0 0.0 . 242 . . Atlas-SNP KIAA0226 9711 hgsc.bcm.edu hg19 3 197409349 197409349 + Silent SNP T T A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . KIAA0226 NM_014687 exon14 c.A2118T p.P706P TGGGGCTGGATGA . 129.0 54.0 165.0 0.0 . 136 . . Atlas-SNP KIAA0226 9711 hgsc.bcm.edu hg19 3 197409351 197409351 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . KIAA0226 NM_014687 exon14 c.C2116T p.P706S GGGCTGGATGAAC . 135.0 54.0 166.0 0.0 . 136 . . Atlas-SNP KIAA0232 9778 hgsc.bcm.edu hg19 4 6865250 6865250 + Silent SNP A A G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . KIAA0232 NM_014743 exon7 c.A3141G p.P1047P CAATCCATTTTCA . 127.0 43.0 123.0 0.0 . 102 . . Atlas-SNP NSUN7 79730 hgsc.bcm.edu hg19 4 40809188 40809188 + Missense_Mutation SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . NSUN7 NM_024677 exon11 c.T1511C p.I504T TTTCTATTTTAAC . 152.0 62.0 160.0 0.0 . 70 . . Atlas-SNP PRKG2 5593 hgsc.bcm.edu hg19 4 82125912 82125912 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PRKG2 NM_006259 exon1 c.C290T p.S97F TCTGGAGAGGCCT . 154.0 61.0 149.0 0.0 . 195 . . Atlas-SNP GYPE 2996 hgsc.bcm.edu hg19 4 144801614 144801614 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . GYPE NM_198682 exon2 c.C86T p.T29I GTTGAAGTGTGCA . 457.0 203.0 458.0 0.0 . 21 . . Atlas-SNP KLHL2 11275 hgsc.bcm.edu hg19 4 166184404 166184404 + Missense_Mutation SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . KLHL2 NM_001161521 exon5 c.G449T p.C150F CTTGTTGTGAATT . 225.0 109.0 263.0 0.0 . 42 . . Atlas-SNP SH3RF1 57630 hgsc.bcm.edu hg19 4 170043263 170043263 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . SH3RF1 NM_020870 exon7 c.C1334T p.T445I GGGCGAGTCTGCG . 102.0 39.0 101.0 0.0 . 60 . . Atlas-SNP IL6ST 3572 hgsc.bcm.edu hg19 5 55265599 55265599 + Missense_Mutation SNP A A G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . IL6ST NM_175767 exon4 c.T149C p.L50P TCCTTTAGCACAC . 178.0 113.0 106.0 0.0 . 75 . . Atlas-SNP MAP1B 4131 hgsc.bcm.edu hg19 5 71403461 71403461 + Missense_Mutation SNP A A C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MAP1B NM_005909 exon1 c.A103C p.S35R CTTGACAGCAAGT . 130.0 28.0 78.0 0.0 . 243 . . Atlas-SNP SNCAIP 9627 hgsc.bcm.edu hg19 5 121780326 121780326 + Silent SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd SNCAIP_ENST00000379533,NS,carcinoma,0,2 SNCAIP NM_005460 exon8 c.C1491A p.A497A GAGCGCCGAGCGG . 274.0 59.0 160.0 0.0 . 308 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127614345 127614345 + Missense_Mutation SNP A A C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . FBN2 NM_001999 exon57 c.T7327G p.Y2443D TTGTATATCCTGG . 139.0 23.0 103.0 0.0 . 858 . . Atlas-SNP PCDHGA8 9708 hgsc.bcm.edu hg19 5 140772927 140772927 + Missense_Mutation SNP C C G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PCDHGA8 NM_014004 exon1 c.C547G p.Q183E GACGTGCAGACTG . 332.0 86.0 198.0 0.0 . 146 . . Atlas-SNP PCDHGC5 56097 hgsc.bcm.edu hg19 5 140870856 140870856 + Silent SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PCDHGC5 NM_018929 exon1 c.C2049T p.H683H CATACACCCTCCT . 178.0 42.0 110.0 0.0 . 199 . . Atlas-SNP FAM71B 153745 hgsc.bcm.edu hg19 5 156590354 156590354 + Nonsense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . FAM71B NM_130899 exon2 c.C922T p.Q308X TCACTTGACCTGG . 81.0 62.0 55.0 0.0 . 145 . . Atlas-SNP TTC1 7265 hgsc.bcm.edu hg19 5 159463724 159463724 + Missense_Mutation SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . TTC1 NM_003314 exon4 c.A418T p.S140C TCTTATAGTCGAG . 112.0 23.0 95.0 0.0 . 26 . . Atlas-SNP PRPF4B 8899 hgsc.bcm.edu hg19 6 4060749 4060749 + Nonsense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PRPF4B NM_003913 exon15 c.C2923T p.Q975X GTACACCAGCTAA . 647.0 453.0 374.0 2.0 . 140 . . Atlas-SNP ZBTB9 221504 hgsc.bcm.edu hg19 6 33423514 33423514 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd ZBTB9,larynx,carcinoma,0,1 ZBTB9 NM_152735 exon2 c.G637A p.E213K GTGGAAGAAGAAG . 157.0 95.0 93.0 0.0 . 23 . . Atlas-SNP CDKN1A 1026 hgsc.bcm.edu hg19 6 36652053 36652053 + Silent SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . CDKN1A NM_001220778 exon2 c.C175T p.L59L ACACCACTGGAGG . 142.0 31.0 83.0 0.0 . 27 . . Atlas-SNP GPRC6A 222545 hgsc.bcm.edu hg19 6 117130749 117130749 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . GPRC6A NM_148963 exon2 c.G226A p.A76T TCATGGCAAGAGT . 36.0 24.0 84.0 0.0 . 152 . . Atlas-SNP MCM9 254394 hgsc.bcm.edu hg19 6 119150342 119150342 + Missense_Mutation SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MCM9 NM_017696 exon8 c.A1397G p.Q466R GACTCCTGGGGGT . 69.0 44.0 146.0 0.0 . 73 . . Atlas-SNP UTRN 7402 hgsc.bcm.edu hg19 6 144863929 144863929 + Splice_Site SNP A A G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . UTRN NM_007124 exon45 c.6520-2A>G . TGCGGTAGATTTG . 40.0 24.0 105.0 0.0 . 327 . . Atlas-SNP TNS3 64759 hgsc.bcm.edu hg19 7 47440020 47440020 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . TNS3 NM_022748 exon15 c.G889A p.V297I AGAAGACTAATTC . 232.0 83.0 263.0 0.0 . 140 . . Atlas-SNP CACNA2D1 781 hgsc.bcm.edu hg19 7 81593423 81593423 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . CACNA2D1 NM_000722 exon34 c.C2729T p.P910L ACTGATGGCTATA . 234.0 98.0 250.0 0.0 . 191 . . Atlas-SNP KIAA1324L 222223 hgsc.bcm.edu hg19 7 86526844 86526844 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . KIAA1324L NM_001142749 exon19 c.G2663A p.G888E CAGGCTCCCTCAA . 92.0 38.0 133.0 0.0 . 225 . . Atlas-SNP TAS2R16 50833 hgsc.bcm.edu hg19 7 122634906 122634906 + Missense_Mutation SNP C C G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . TAS2R16 NM_016945 exon1 c.G783C p.W261C AGCTTCCCAGACC . 148.0 49.0 137.0 0.0 . 57 . . Atlas-SNP GPR37 2861 hgsc.bcm.edu hg19 7 124404046 124404046 + Silent SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . GPR37 NM_005302 exon1 c.C985T p.L329L CCTCCAGCAGCCA . 28.0 13.0 42.0 0.0 . 89 . . Atlas-SNP SSPO 23145 hgsc.bcm.edu hg19 7 149524046 149524046 + Missense_Mutation SNP A A G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . . NM_198455 exon104 c.A14765G p.Q4922R ACTGTCAGGGTGA . 35.0 15.0 55.0 0.0 . . . . Atlas-SNP ADAM2 2515 hgsc.bcm.edu hg19 8 39678669 39678669 + Missense_Mutation SNP T T A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ADAM2 NM_001464 exon6 c.A365T p.N122I CTAACATTTTCAA . 415.0 86.0 257.0 0.0 . 124 . . Atlas-SNP CNGB3 54714 hgsc.bcm.edu hg19 8 87755757 87755757 + Silent SNP T T G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . CNGB3 NM_019098 exon1 c.A99C p.P33P ATTACTTGGGTGA . 288.0 188.0 153.0 0.0 . 176 . . Atlas-SNP NDUFAF6 137682 hgsc.bcm.edu hg19 8 96037272 96037272 + Silent SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . . NM_152416 exon1 c.G36T p.P12P GGGGCCGTTGCGG . 11.0 7.0 3.0 0.0 . . . . Atlas-SNP DOCK8 81704 hgsc.bcm.edu hg19 9 434898 434898 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . DOCK8 NM_203447 exon39 c.G5002A p.A1668T GTGCACGCCGCTG . 60.0 27.0 68.0 0.0 . 401 . . Atlas-SNP NOL6 65083 hgsc.bcm.edu hg19 9 33467217 33467217 + Missense_Mutation SNP C C G rs374756474 alternate_allele TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . NOL6 NM_022917 exon14 c.G1769C p.R590P AAACGCCGAAGCT . 104.0 53.0 91.0 0.0 . 85 . . Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79898289 79898289 + Missense_Mutation SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . VPS13A NM_001018038 exon30 c.A3137T p.N1046I CCACAAATGAAGA . 348.0 137.0 375.0 1.0 . 735 . . Atlas-SNP USP20 10868 hgsc.bcm.edu hg19 9 132638408 132638408 + Splice_Site SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . USP20 NM_001110303 exon22 c.2301-1G>T . GGCACAGATTCGG . 172.0 67.0 206.0 0.0 . 186 . . Atlas-SNP GTF3C4 9329 hgsc.bcm.edu hg19 9 135553599 135553599 + Missense_Mutation SNP A A G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . GTF3C4 NM_012204 exon2 c.A593G p.N198S ATCTCAACAGACT . 129.0 46.0 153.0 0.0 . 53 . . Atlas-SNP ITIH5 80760 hgsc.bcm.edu hg19 10 7659077 7659077 + Missense_Mutation SNP T T A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ITIH5 NM_001001851 exon6 c.A821T p.Q274L ATTACCTGGATGT . 103.0 6.0 86.0 0.0 . 343 . . Atlas-SNP CACNB2 783 hgsc.bcm.edu hg19 10 18828423 18828423 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . CACNB2 NM_201596 exon14 c.C1753T p.H585Y GCCTCACACCGTG . 202.0 78.0 206.0 0.0 . 220 . . Atlas-SNP ZNF239 8187 hgsc.bcm.edu hg19 10 44052197 44052197 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ZNF239 NM_001099283 exon2 c.C1331T p.S444F AGGTTGGAGCTCT . 93.0 40.0 91.0 0.0 . 45 . . Atlas-SNP TMEM72 643236 hgsc.bcm.edu hg19 10 45406975 45406975 + Silent SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . TMEM72 NM_001123376 exon1 c.G15A p.V5V CCAGGTGTTCTGG . 32.0 12.0 39.0 0.0 . 25 . . Atlas-SNP SORCS1 114815 hgsc.bcm.edu hg19 10 108924108 108924108 + Missense_Mutation SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . SORCS1 NM_001206572 exon1 c.G177T p.Q59H CCGCCCCTGGTGG . 67.0 7.0 72.0 0.0 . 534 . . Atlas-SNP SEC23IP 11196 hgsc.bcm.edu hg19 10 121678002 121678002 + Missense_Mutation SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . SEC23IP NM_007190 exon10 c.G1851T p.Q617H GAAGCAGCTACAT . 87.0 6.0 111.0 0.0 . 100 . . Atlas-SNP MMP26 56547 hgsc.bcm.edu hg19 11 5013312 5013312 + Silent SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MMP26 NM_021801 exon5 c.C714T p.F238F AACCTTCCAGCTC . 183.0 72.0 164.0 0.0 . 49 . . Atlas-SNP RBMXL2 27288 hgsc.bcm.edu hg19 11 7111063 7111063 + Missense_Mutation SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . RBMXL2 NM_014469 exon1 c.T712C p.Y238H GGAGAGTACACCC . 59.0 16.0 85.0 0.0 . 47 . . Atlas-SNP KCNA4 3739 hgsc.bcm.edu hg19 11 30034089 30034089 + Missense_Mutation SNP G G C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . KCNA4 NM_002233 exon2 c.C137G p.A46G GTGGCCGCTGCAA . 41.0 17.0 35.0 0.0 . 158 . . Atlas-SNP PACSIN3 29763 hgsc.bcm.edu hg19 11 47201829 47201829 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PACSIN3 NM_016223 exon6 c.G511T p.E171X GGCTCTCCCTCGT . 41.0 18.0 45.0 0.0 . 28 . . Atlas-SNP OR5D13 390142 hgsc.bcm.edu hg19 11 55541283 55541283 + Missense_Mutation SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . OR5D13 NM_001001967 exon1 c.C370A p.R124S TATGACCGTTTTG . 176.0 72.0 154.0 0.0 . 96 . . Atlas-SNP OR8J3 81168 hgsc.bcm.edu hg19 11 55905105 55905105 + Silent SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . OR8J3 NM_001004064 exon1 c.C90A p.V30V TAGGAAGACCAGG . 134.0 63.0 167.0 0.0 . 112 . . Atlas-SNP SLC22A24 283238 hgsc.bcm.edu hg19 11 62863471 62863471 + Missense_Mutation SNP G G C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . SLC22A24 NM_001136506 exon6 c.C1062G p.C354W CACAAAGCACAGG . 171.0 70.0 171.0 0.0 . 31 . . Atlas-SNP TENM4 26011 hgsc.bcm.edu hg19 11 78525437 78525437 + Nonsense_Mutation SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . . NM_001098816 exon13 c.C1685A p.S562X TCCACCGACTCTG . 229.0 91.0 237.0 0.0 . . . . Atlas-SNP FZD4 8322 hgsc.bcm.edu hg19 11 86663371 86663371 + Missense_Mutation SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . FZD4 NM_012193 exon2 c.C427A p.L143M AGTTCAGACTCTC . 144.0 51.0 175.0 0.0 . 52 . . Atlas-SNP GJB2 2706 hgsc.bcm.edu hg19 13 20763464 20763464 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . GJB2 NM_004004 exon2 c.C257T p.T86M GCTGGCGTGGACA . 65.0 26.0 64.0 0.0 . 19 . . Atlas-SNP GPR12 2835 hgsc.bcm.edu hg19 13 27333433 27333433 + Missense_Mutation SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . GPR12 NM_005288 exon2 c.G532T p.G178C TCCAGCCCATGAC . 70.0 31.0 61.0 0.0 . 67 . . Atlas-SNP PCDH9 5101 hgsc.bcm.edu hg19 13 67799953 67799953 + Missense_Mutation SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PCDH9 NM_203487 exon2 c.A2620G p.R874G ACTTCCTTTTCTT . 168.0 69.0 141.0 0.0 . 252 . . Atlas-SNP KLHL1 57626 hgsc.bcm.edu hg19 13 70535504 70535504 + Missense_Mutation SNP C C G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . KLHL1 NM_020866 exon3 c.G753C p.E251D GATCTCCTCTTGC . 131.0 62.0 108.0 0.0 . 164 . . Atlas-SNP CHMP4A 29082 hgsc.bcm.edu hg19 14 24679870 24679870 + Missense_Mutation SNP T T A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . CHMP4A NM_014169 exon4 c.A593T p.D198V TCCACATCATCTC . 111.0 43.0 114.0 0.0 . 20 . . Atlas-SNP DYNC1H1 1778 hgsc.bcm.edu hg19 14 102500705 102500705 + Missense_Mutation SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . DYNC1H1 NM_001376 exon56 c.A10670T p.D3557V ATGCTGATGAGCG . 128.0 55.0 147.0 0.0 . 395 . . Atlas-SNP SNRPN 6638 hgsc.bcm.edu hg19 15 25213230 25213230 + Splice_Site SNP G G T rs368905564 alternate_allele TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . SNRPN . . . . AACCAGGTTAGAG . 39.0 12.0 48.0 0.0 . 58 . . Atlas-SNP FMN1 342184 hgsc.bcm.edu hg19 15 33260970 33260970 + Missense_Mutation SNP G G C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . FMN1 NM_001103184 exon4 c.C2263G p.P755A AACTGGGCTCGAT . 189.0 57.0 200.0 0.0 . 174 . . Atlas-SNP MGA 23269 hgsc.bcm.edu hg19 15 42042688 42042688 + Missense_Mutation SNP G G C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MGA NM_001164273 exon17 c.G6883C p.D2295H AGTGCTGACTTCA . 106.0 48.0 119.0 0.0 . 264 . . Atlas-SNP TMEM8A 58986 hgsc.bcm.edu hg19 16 422089 422089 + Silent SNP C C A rs141574918 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . TMEM8A NM_021259 exon13 c.G2214T p.P738P AGGTGGCGGCAGC . 78.0 27.0 91.0 0.0 . 49 . C|1.000;T|0.000 Atlas-SNP ITGAM 3684 hgsc.bcm.edu hg19 16 31332817 31332817 + Missense_Mutation SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ITGAM NM_001145808 exon16 c.T1874C p.M625T CAATCATGGAGTT . 159.0 66.0 173.0 0.0 . 137 . . Atlas-SNP ITGAM 3684 hgsc.bcm.edu hg19 16 31336335 31336335 + Silent SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ITGAM NM_001145808 exon19 c.C2349A p.I783I CAGCATCACCTTC . 60.0 18.0 59.0 0.0 . 137 . . Atlas-SNP TGFB1I1 7041 hgsc.bcm.edu hg19 16 31485920 31485920 + Missense_Mutation SNP A A C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . TGFB1I1 NM_001042454 exon7 c.A556C p.S186R GTGGTGAGCTCCA . 108.0 44.0 112.0 0.0 . 60 . . Atlas-SNP MYO1C 4641 hgsc.bcm.edu hg19 17 1378257 1378257 + Silent SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MYO1C NM_001080779 exon15 c.G1644T p.A548A CTCCCCCGCATAG . 122.0 49.0 98.0 0.0 . 57 . . Atlas-SNP USP43 124739 hgsc.bcm.edu hg19 17 9604706 9604706 + Missense_Mutation SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . USP43 NM_001267576 exon12 c.A1700T p.Q567L ACTGCCAAGTCCT . 57.0 23.0 75.0 0.0 . 65 . . Atlas-SNP SUPT6H 6830 hgsc.bcm.edu hg19 17 27028455 27028455 + Splice_Site SNP A A G novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . SUPT6H NM_003170 exon37 c.4995-2A>G . CCTCCCAGGTCCA . 66.0 34.0 70.0 0.0 . 165 . . Atlas-SNP KRTAP17-1 83902 hgsc.bcm.edu hg19 17 39471767 39471767 + Missense_Mutation SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . KRTAP17-1 NM_031964 exon1 c.T136A p.S46T AGCCAGAGCCCCC . 54.0 6.0 24.0 0.0 . 14 . . Atlas-SNP KRT16 3868 hgsc.bcm.edu hg19 17 39766282 39766282 + Splice_Site SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . KRT16 NM_005557 exon9 c.1328-1G>A . TGAAGACTGTGGG . 78.0 29.0 89.0 0.0 . 45 . . Atlas-SNP CTAGE1 64693 hgsc.bcm.edu hg19 18 19997418 19997418 + Missense_Mutation SNP T T A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . CTAGE1 NM_172241 exon1 c.A357T p.E119D CTCTTTTTCTAGA . 99.0 36.0 136.0 0.0 . 146 . . Atlas-SNP LIPG 9388 hgsc.bcm.edu hg19 18 47101852 47101852 + Missense_Mutation SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . LIPG NM_006033 exon5 c.A685T p.S229C GGCTTGAGCATTG . 91.0 34.0 95.0 0.0 . 47 . . Atlas-SNP CCDC68 80323 hgsc.bcm.edu hg19 18 52604137 52604137 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd CCDC68,NS,malignant_melanoma,0,1 CCDC68 NM_025214 exon6 c.G398A p.R133K AATAATCTCTGGG . 87.0 37.0 122.0 0.0 . 38 . . Atlas-SNP SAFB2 9667 hgsc.bcm.edu hg19 19 5594100 5594100 + Missense_Mutation SNP A A C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . SAFB2 NM_014649 exon15 c.T2009G p.L670R CACTCGAGCTGCA . 71.0 25.0 89.0 0.0 . 90 . . Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11143970 11143970 + Missense_Mutation SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . SMARCA4 NM_003072 exon26 c.T3551C p.L1184P AGGACCTGCAAGC . 132.0 56.0 146.0 0.0 . 502 . . Atlas-SNP MYO9B 4650 hgsc.bcm.edu hg19 19 17321609 17321609 + Missense_Mutation SNP G G A rs373618149 TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MYO9B NM_001130065 exon38 c.G5882A p.R1961Q AGGACCGGGAAAA . 84.0 38.0 100.0 0.0 . 264 . . Atlas-SNP ZNF714 148206 hgsc.bcm.edu hg19 19 21299777 21299777 + Missense_Mutation SNP G G A rs111443257 bycluster TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ZNF714 NM_182515 exon5 c.G307A p.E103K GGTTATGAACTAA . 457.0 25.0 435.0 0.0 . 121 . . Atlas-SNP ZNF99 7652 hgsc.bcm.edu hg19 19 22940876 22940876 + Missense_Mutation SNP T T A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ZNF99 NM_001080409 exon4 c.A1835T p.Q612L ATTATCTGATGTT . 177.0 82.0 166.0 0.0 . 273 . . Atlas-SNP ZNF527 84503 hgsc.bcm.edu hg19 19 37880756 37880756 + Missense_Mutation SNP G G T rs202094634 TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ZNF527 NM_032453 exon5 c.G1805T p.R602I ATCAGAGAATTCA . 54.0 23.0 70.0 0.0 . 78 . G|0.999;T|0.001 Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38956904 38956904 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd RYR1,NS,carcinoma,+1,1 RYR1 NM_001042723 exon24 c.G3044A p.R1015H CAGCGCGCCGAAA . 130.0 48.0 160.0 0.0 . 708 . . Atlas-SNP BCL3 602 hgsc.bcm.edu hg19 19 45260629 45260629 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . BCL3 NM_005178 exon5 c.C770T p.T257I AAGAAACCGTGCA . 136.0 53.0 179.0 0.0 . 28 . . Atlas-SNP HAS1 3036 hgsc.bcm.edu hg19 19 52216886 52216886 + Silent SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . HAS1 NM_001523 exon5 c.C1531T p.L511L GCAGCAGCGCCCA . 117.0 46.0 118.0 0.0 . 61 . . Atlas-SNP ZNF578 147660 hgsc.bcm.edu hg19 19 53014279 53014279 + Silent SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . . NM_001099694 exon6 c.A645T p.S215S CCATTCATCATTA . 308.0 116.0 299.0 0.0 . . . . Atlas-SNP ZNF347 84671 hgsc.bcm.edu hg19 19 53644667 53644667 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ZNF347 NM_001172675 exon5 c.C1417T p.L473F TTGCAAGGTGTGA . 110.0 47.0 109.0 0.0 . 87 . . Atlas-SNP C20orf96 140680 hgsc.bcm.edu hg19 20 270284 270284 + Missense_Mutation SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . C20orf96 NM_153269 exon3 c.A103G p.T35A GCTTGGTTTCCTG . 140.0 61.0 168.0 0.0 . 28 . . Atlas-SNP ZNF217 7764 hgsc.bcm.edu hg19 20 52198237 52198237 + Missense_Mutation SNP A A T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ZNF217 NM_006526 exon1 c.T1129A p.C377S CGGAGCAGTGAGT . 94.0 42.0 126.0 0.0 . 227 . . Atlas-SNP SYCP2 10388 hgsc.bcm.edu hg19 20 58496502 58496502 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . SYCP2 NM_014258 exon3 c.G31T p.E11X ATTTTTCCAACTG . 209.0 89.0 170.0 0.0 . 204 . . Atlas-SNP CDH26 60437 hgsc.bcm.edu hg19 20 58569360 58569360 + Silent SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd CDH26_ENST00000244047,caecum,carcinoma,0,2 CDH26 NM_177980 exon11 c.T1482C p.N494N CATCAATGACAAC . 94.0 45.0 92.0 0.0 . 229 . . Atlas-SNP STMN3 50861 hgsc.bcm.edu hg19 20 62273597 62273597 + Missense_Mutation SNP T T C novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . STMN3 NM_015894 exon4 c.A347G p.E116G AGCACCTCGCGCT . 88.0 33.0 116.0 0.0 . 19 . . Atlas-SNP ICOSLG 23308 hgsc.bcm.edu hg19 21 45655360 45655360 + Silent SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ICOSLG NM_015259 exon4 c.C492T p.Y164Y CCTGGGGTAGCCG . 64.0 43.0 113.0 0.0 . 20 . . Atlas-SNP POTEH 23784 hgsc.bcm.edu hg19 22 16287870 16287870 + Missense_Mutation SNP C C T rs368142357 TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . POTEH NM_001136213 exon1 c.G16A p.G6S TTGAACCAGCCTC . 633.0 178.0 682.0 0.0 . 114 . . Atlas-SNP CPXCR1 53336 hgsc.bcm.edu hg19 X 88008450 88008450 + Missense_Mutation SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . CPXCR1 NM_001184771 exon3 c.C35T p.A12V ATACAGCTGGAAA . 229.0 197.0 309.0 0.0 . 83 . . Atlas-SNP PLS3 5358 hgsc.bcm.edu hg19 X 114863611 114863611 + Silent SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . PLS3 NM_005032 exon4 c.C339T p.S113S GTTGTCCAGCGAA . 272.0 229.0 278.0 0.0 . 60 . . Atlas-SNP GPR112 139378 hgsc.bcm.edu hg19 X 135443733 135443733 + Missense_Mutation SNP G G T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . GPR112 NM_153834 exon12 c.G7264T p.A2422S GGAAATGCCACAA . 222.0 179.0 218.0 0.0 . 459 . . Atlas-SNP DUSP9 1852 hgsc.bcm.edu hg19 X 152915517 152915517 + Silent SNP C C T novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . DUSP9 NM_001395 exon4 c.C912T p.Y304Y GGCCTACCTCATG . 83.0 63.0 84.0 0.0 . 41 . . Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 15500 15500 + Missense_Mutation SNP G G A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . . ENST00000361789 exon1 c.G754A p.D252N CTAGGCGACCCAG . 64.0 17.0 26.0 0.0 . . . . Atlas-SNP FAM120C 54954 hgsc.bcm.edu hg19 X 54185860 54185862 + In_Frame_Del DEL CTT CTT - novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 CTT CTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . FAM120C NM_017848 exon2 c.888_890del p.296_297del . . 127.0 97.0 152.0 0.0 . 89 . . Atlas-INDEL ZNF627 199692 hgsc.bcm.edu hg19 19 11728647 11728656 + Frame_Shift_Del DEL AGAGAAACCC AGAGAAACCC - novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 AGAGAAACCC AGAGAAACCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ZNF627 NM_145295 exon4 c.1328_1337del p.443_446del . . 27.0 13.0 29.0 0.0 . 43 . . Atlas-INDEL FMO3 2328 hgsc.bcm.edu hg19 1 171076962 171076962 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . FMO3 NM_001002294 exon4 c.467delC p.P156fs . . 143.0 53.0 154.0 0.0 . 73 . . Atlas-INDEL VAMP1 6843 hgsc.bcm.edu hg19 12 6574098 6574099 + Frame_Shift_Ins INS - - GA novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . VAMP1 NM_016830 exon4 c.298_299insTC p.M100fs . . 63.0 16.0 78.0 0.0 . 6 . . Atlas-INDEL MTMR6 9107 hgsc.bcm.edu hg19 13 25823497 25823498 + In_Frame_Ins INS - - TTA novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . MTMR6 NM_004685 exon14 c.1739_1740insTAA p.D580delinsVN . . 137.0 37.0 183.0 0.0 . 75 . . Atlas-INDEL MTMR6 9107 hgsc.bcm.edu hg19 13 25823489 25823492 + Frame_Shift_Del DEL GAAG GAAG - novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 GAAG GAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd MTMR6,colon,carcinoma,0,1 MTMR6 NM_004685 exon14 c.1745_1748del p.582_583del . . 135.0 36.0 178.0 0.0 . 75 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74281992 74281992 + Frame_Shift_Del DEL T T - novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ALB NM_000477 exon10 c.1210delC p.L404fs . . 335.0 150.0 350.0 0.0 . 132 . . Atlas-INDEL ESRP2 80004 hgsc.bcm.edu hg19 16 68265386 68265401 + Frame_Shift_Del DEL TGCTGGTTGAGCACCA TGCTGGTTGAGCACCA - novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 TGCTGGTTGAGCACCA TGCTGGTTGAGCACCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . ESRP2 NM_024939 exon11 c.1497_1512del p.499_504del . . 65.0 17.0 83.0 0.0 . 118 . . Atlas-INDEL DDX11 1663 hgsc.bcm.edu hg19 12 31253960 31253961 + Splice_Site INS - - A novel TCGA-DD-AADQ-01A-11D-A40R-10 TCGA-DD-AADQ-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a9ad3707-975a-4455-a65c-976f9cc645ad f1879db2-297f-44d1-b52f-3cbf282a8ecd . DDX11 NM_152438 exon20 c.1949-1->A . . . 59.0 13.0 87.0 0.0 . 188 . . Atlas-INDEL