Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm VPS13D 55187 hgsc.bcm.edu hg19 1 12337226 12337226 + Missense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . VPS13D NM_015378 exon19 c.C3581T p.A1194V AAATTGCAACTGC . 82.0 30.0 114.0 0.0 . 316 . . Atlas-SNP USP48 84196 hgsc.bcm.edu hg19 1 22048144 22048144 + Missense_Mutation SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . USP48 NM_032236 exon13 c.G1762T p.G588C CATACCCCTTTAC . 133.0 65.0 152.0 0.0 . 91 . . Atlas-SNP TSSK3 81629 hgsc.bcm.edu hg19 1 32828424 32828424 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . TSSK3 NM_052841 exon1 c.T122C p.I41T AAGTTATAGACAA . 163.0 35.0 214.0 0.0 . 22 . . Atlas-SNP KIAA1107 23285 hgsc.bcm.edu hg19 1 92646304 92646304 + Nonsense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . KIAA1107 NM_015237 exon8 c.G1750T p.E584X GAAAAAGAGAAGT . 256.0 54.0 341.0 0.0 . 60 . . Atlas-SNP FCRL5 83416 hgsc.bcm.edu hg19 1 157494289 157494289 + Silent SNP C C T rs143158449 alternate_allele TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . FCRL5 NM_031281 exon10 c.G2019A p.G673G CAGGTCCCCCACC . 209.0 52.0 356.0 0.0 . 177 . C|1.000;A|0.000 Atlas-SNP ATP1A4 480 hgsc.bcm.edu hg19 1 160136391 160136391 + Missense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe ATP1A4,NS,carcinoma,0,1 ATP1A4 NM_144699 exon8 c.C1121T p.T374M TGGAGACGCTGGG . 80.0 14.0 117.0 0.0 . 167 . . Atlas-SNP DENND1B 163486 hgsc.bcm.edu hg19 1 197479885 197479885 + Missense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . DENND1B NM_001195215 exon23 c.G2033A p.S678N GGGTCACTCACAT . 149.0 51.0 189.0 0.0 . 108 . . Atlas-SNP LEFTY2 7044 hgsc.bcm.edu hg19 1 226127110 226127110 + Missense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . LEFTY2 NM_003240 exon3 c.C688A p.L230I CCCCAAGCCCGGC . 129.0 31.0 150.0 0.0 . 25 . . Atlas-SNP LYST 1130 hgsc.bcm.edu hg19 1 235897870 235897870 + Silent SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe LYST,colon,carcinoma,-1,1 LYST NM_000081 exon32 c.G8448T p.L2816L CATAAGCAGTTCT . 85.0 15.0 120.0 0.0 . 370 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237889575 237889575 + Silent SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . RYR2 NM_001035 exon75 c.G10692A p.K3564K TCAGAAGTCTAAA . 252.0 32.0 358.0 0.0 . 1273 . . Atlas-SNP TRIM58 25893 hgsc.bcm.edu hg19 1 248039229 248039229 + Missense_Mutation SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe TRIM58,NS,carcinoma,0,1 TRIM58 NM_015431 exon6 c.C899A p.A300E CCACGGCGCACCC . 52.0 11.0 83.0 0.0 . 143 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1926369 1926369 + Missense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . MYT1L NM_015025 exon10 c.C1172A p.P391H GACCGGGGGCTCA . 70.0 9.0 74.0 0.0 . 241 . . Atlas-SNP CENPO 79172 hgsc.bcm.edu hg19 2 25038488 25038488 + Missense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . CENPO NM_024322 exon5 c.C457T p.H153Y CATCACCATTCAG . 135.0 60.0 183.0 0.0 . 18 . . Atlas-SNP HNRPLL 92906 hgsc.bcm.edu hg19 2 38810997 38810997 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . HNRPLL NM_138394 exon4 c.A618G p.I206M TGCTTGTATCCCA . 356.0 72.0 385.0 0.0 . 19 . . Atlas-SNP TTL 150465 hgsc.bcm.edu hg19 2 113278000 113278000 + Silent SNP T T A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . TTL NM_153712 exon6 c.T1017A p.A339A ATGTGCTCAGTAA . 69.0 22.0 103.0 0.0 . 27 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141072505 141072505 + Silent SNP T T A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . LRP1B NM_018557 exon83 c.A12804T p.L4268L TTTACCTAGAACT . 46.0 12.0 107.0 0.0 . 1315 . . Atlas-SNP TTLL3 26140 hgsc.bcm.edu hg19 3 9876555 9876555 + Silent SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . TTLL3 NM_001025930 exon12 c.T2316C p.D772D CCTTGATTTCAAG . 105.0 53.0 108.0 0.0 . 51 . . Atlas-SNP SLC4A7 9497 hgsc.bcm.edu hg19 3 27436010 27436010 + Missense_Mutation SNP T T A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . SLC4A7 NM_003615 exon20 c.A3089T p.K1030M TTTACCTTTAGGA . 115.0 61.0 124.0 0.0 . 119 . . Atlas-SNP TGM4 7047 hgsc.bcm.edu hg19 3 44926965 44926965 + Missense_Mutation SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . TGM4 NM_003241 exon2 c.C168A p.H56Q CTACCACCAACTG . 139.0 71.0 163.0 0.0 . 82 . . Atlas-SNP GRAMD1C 54762 hgsc.bcm.edu hg19 3 113588361 113588361 + Missense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . GRAMD1C NM_017577 exon3 c.G182T p.S61I TTTCAAGTTCCAC . 455.0 35.0 477.0 0.0 . 71 . . Atlas-SNP GATA2 2624 hgsc.bcm.edu hg19 3 128204630 128204630 + Silent SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . GATA2 NM_001145662 exon3 c.C811T p.L271L CCCCCAGGAAGCC . 42.0 16.0 71.0 0.0 . 122 . . Atlas-SNP RASA2 5922 hgsc.bcm.edu hg19 3 141289753 141289753 + Splice_Site SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . RASA2 NM_006506 exon10 c.864-1G>A . ACTTTAGGTACTT . 103.0 41.0 142.0 0.0 . 169 . . Atlas-SNP PLSCR1 5359 hgsc.bcm.edu hg19 3 146234891 146234891 + Nonsense_Mutation SNP T T A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PLSCR1 NM_021105 exon8 c.A802T p.R268X CCTCTCTCAAAAT . 180.0 70.0 285.0 0.0 . 35 . . Atlas-SNP ZIC4 84107 hgsc.bcm.edu hg19 3 147113964 147113964 + Silent SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . ZIC4 NM_001168378 exon3 c.C513A p.R171R GGGCTGGCGCATG . 127.0 53.0 128.0 0.0 . 174 . . Atlas-SNP NCAPG 64151 hgsc.bcm.edu hg19 4 17829968 17829968 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . NCAPG NM_022346 exon12 c.C1721A p.S574X CCATTTCAACAGG . 60.0 29.0 89.0 0.0 . 76 . . Atlas-SNP PGM2 55276 hgsc.bcm.edu hg19 4 37848658 37848658 + Missense_Mutation SNP A A G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PGM2 NM_018290 exon9 c.A1114G p.T372A AAAGACACGTACA . 70.0 27.0 77.0 0.0 . 45 . . Atlas-SNP LARP1B 55132 hgsc.bcm.edu hg19 4 129043173 129043173 + Missense_Mutation SNP A A G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . LARP1B NM_178043 exon11 c.A1354G p.T452A ATTGTAACTCAGA . 196.0 74.0 244.0 0.0 . 120 . . Atlas-SNP DCP2 167227 hgsc.bcm.edu hg19 5 112339697 112339697 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . DCP2 NM_152624 exon8 c.T865C p.W289R GACCAGTGGGTAA . 208.0 73.0 207.0 0.0 . 34 . . Atlas-SNP PCDHB1 29930 hgsc.bcm.edu hg19 5 140431371 140431371 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PCDHB1 NM_013340 exon1 c.T316C p.F106L CTGCACTTTGAAG . 108.0 42.0 123.0 0.0 . 148 . . Atlas-SNP DSP 1832 hgsc.bcm.edu hg19 6 7568673 7568673 + Nonsense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . DSP NM_004415 exon11 c.G1270T p.E424X CAGAAAGAACGAG . 59.0 25.0 97.0 0.0 . 306 . . Atlas-SNP PPP1R10 5514 hgsc.bcm.edu hg19 6 30571840 30571840 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PPP1R10 NM_002714 exon14 c.A1453G p.I485V CCTGGATATATCG . 45.0 17.0 89.0 0.0 . 60 . . Atlas-SNP STK19 8859 hgsc.bcm.edu hg19 6 31939824 31939824 + Missense_Mutation SNP G G C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . STK19 NM_032454 exon1 c.G51C p.W17C ACAGTGGCGGGCA . 80.0 15.0 111.0 0.0 . 33 . . Atlas-SNP KIF6 221458 hgsc.bcm.edu hg19 6 39387781 39387781 + Splice_Site SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . KIF6 NM_145027 exon16 c.1755-2A>G . AAAATCTGGAGGG . 135.0 40.0 148.0 0.0 . 233 . . Atlas-SNP GPR116 221395 hgsc.bcm.edu hg19 6 46828584 46828584 + Silent SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . GPR116 NM_015234 exon16 c.G2247T p.L749L ATCCTTCAGGTAT . 91.0 9.0 95.0 0.0 . 133 . . Atlas-SNP BAG2 9532 hgsc.bcm.edu hg19 6 57037534 57037534 + Silent SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . BAG2 NM_004282 exon1 c.G39T p.G13G CGAGGGGCGCTTC . 214.0 48.0 239.0 0.0 . 10 . . Atlas-SNP FHL5 9457 hgsc.bcm.edu hg19 6 97052637 97052637 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . FHL5 NM_020482 exon4 c.C171A p.Y57X TTGTTACAAAGAC . 57.0 16.0 63.0 0.0 . 73 . . Atlas-SNP PNLDC1 154197 hgsc.bcm.edu hg19 6 160240288 160240288 + Missense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PNLDC1 NM_173516 exon18 c.C1403T p.A468V GCAGTGCGCGGAA . 43.0 18.0 54.0 0.0 . 66 . . Atlas-SNP TAS2R60 338398 hgsc.bcm.edu hg19 7 143141236 143141236 + Missense_Mutation SNP A A G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . TAS2R60 NM_177437 exon1 c.A691G p.T231A CTTACAACCTCAG . 42.0 26.0 77.0 0.0 . 55 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3087644 3087644 + Silent SNP A A G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe CSMD1_ENST00000537824,NS,carcinoma,0,2 CSMD1 NM_033225 exon27 c.T4263C p.Y1421Y GAGCTGATAGCCA . 58.0 16.0 148.0 0.0 . 1469 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3326340 3326340 + Silent SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe CSMD1_ENST00000537824,NS,lymphoid_neoplasm,0,4 CSMD1 NM_033225 exon12 c.G1455T p.T485T GGATCCCGTGAGC . 18.0 6.0 46.0 0.0 . 1469 . . Atlas-SNP DLC1 10395 hgsc.bcm.edu hg19 8 12952358 12952358 + Missense_Mutation SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . DLC1 NM_182643 exon12 c.G3436T p.V1146L CTGCCACGTCATA . 36.0 15.0 115.0 0.0 . 411 . . Atlas-SNP PSD3 23362 hgsc.bcm.edu hg19 8 18658787 18658787 + Silent SNP A A C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PSD3 NM_015310 exon7 c.T2016G p.A672A TTGTGAAGCAATG . 194.0 76.0 505.0 0.0 . 142 . . Atlas-SNP VPS13B 157680 hgsc.bcm.edu hg19 8 100127975 100127975 + Silent SNP A A G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . VPS13B NM_152564 exon7 c.A810G p.Q270Q TCAACAACTGCCT . 747.0 50.0 388.0 0.0 . 811 . . Atlas-SNP LRP12 29967 hgsc.bcm.edu hg19 8 105509945 105509945 + Missense_Mutation SNP A A C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . LRP12 NM_013437 exon5 c.T835G p.Y279D GAGGATAAAAGTC . 240.0 192.0 146.0 0.0 . 124 . . Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110457250 110457250 + Missense_Mutation SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PKHD1L1 NM_177531 exon38 c.G5152A p.A1718T CCTGCTGCCCAAC . 276.0 30.0 131.0 0.0 . 522 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113249531 113249531 + Silent SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . CSMD3 NM_198123 exon67 c.C10515T p.Y3505Y GAAATTGTAAGAG . 193.0 151.0 140.0 1.0 . 2325 . . Atlas-SNP EXT1 2131 hgsc.bcm.edu hg19 8 119122935 119122935 + Silent SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . EXT1 NM_000127 exon1 c.C351T p.Y117Y GTATACGTAGACT . 354.0 19.0 233.0 0.0 . 98 . . Atlas-SNP PTAR1 375743 hgsc.bcm.edu hg19 9 72374805 72374805 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PTAR1 NM_001099666 exon1 c.A50G p.K17R ATGTCCTTCACAA . 96.0 44.0 170.0 0.0 . 46 . . Atlas-SNP HELLS 3070 hgsc.bcm.edu hg19 10 96350289 96350289 + Silent SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . HELLS NM_018063 exon14 c.G1608A p.Q536Q AATACAGCCAGAG . 183.0 36.0 330.0 0.0 . 63 . . Atlas-SNP NHLRC2 374354 hgsc.bcm.edu hg19 10 115662337 115662337 + Missense_Mutation SNP C C G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . NHLRC2 NM_198514 exon8 c.C1479G p.D493E TGCAGACTCCTAC . 126.0 17.0 254.0 0.0 . 56 . . Atlas-SNP DCHS1 8642 hgsc.bcm.edu hg19 11 6643621 6643621 + Missense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . DCHS1 NM_003737 exon21 c.G9286A p.G3096R GCAGCCCTGCCTT . 68.0 22.0 91.0 0.0 . 277 . . Atlas-SNP TRAF6 7189 hgsc.bcm.edu hg19 11 36520132 36520132 + Missense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . TRAF6 NM_004620 exon3 c.C355A p.P119T TGTCTGGAAATAG . 55.0 13.0 102.0 0.0 . 56 . . Atlas-SNP KBTBD4 55709 hgsc.bcm.edu hg19 11 47599068 47599068 + Missense_Mutation SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . KBTBD4 NM_018095 exon2 c.C532T p.L178F TATAGAGCTCAGG . 66.0 11.0 99.0 0.0 . 55 . . Atlas-SNP OR5R1 219479 hgsc.bcm.edu hg19 11 56185178 56185178 + Silent SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . OR5R1 NM_001004744 exon1 c.C531T p.F177F ACAATAGAAATGG . 92.0 38.0 178.0 0.0 . 83 . . Atlas-SNP TMEM223 79064 hgsc.bcm.edu hg19 11 62558364 62558364 + Missense_Mutation SNP G G C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . TMEM223 NM_001080501 exon2 c.C340G p.L114V AGAGAAGACCAGC . 65.0 32.0 125.0 0.0 . 22 . . Atlas-SNP PGR 5241 hgsc.bcm.edu hg19 11 100996767 100996767 + Missense_Mutation SNP C C G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PGR NM_000926 exon2 c.G1760C p.C587S ACCTTACAGCTCC . 66.0 13.0 100.0 0.0 . 115 . . Atlas-SNP EXPH5 23086 hgsc.bcm.edu hg19 11 108389093 108389093 + Missense_Mutation SNP T T G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . EXPH5 NM_015065 exon5 c.A500C p.K167T TATATTTTTGCCT . 60.0 18.0 95.0 0.0 . 193 . . Atlas-SNP SIK2 23235 hgsc.bcm.edu hg19 11 111591262 111591262 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . SIK2 NM_015191 exon11 c.T1556C p.M519T ATGATATGGGGTC . 83.0 16.0 145.0 0.0 . 89 . . Atlas-SNP PTPRR 5801 hgsc.bcm.edu hg19 12 71155351 71155351 + Missense_Mutation SNP A A G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PTPRR NM_002849 exon4 c.T527C p.I176T TCAGAAATTCCTG . 107.0 44.0 178.0 0.0 . 109 . . Atlas-SNP USP44 84101 hgsc.bcm.edu hg19 12 95927545 95927545 + Missense_Mutation SNP C C A rs371620070 alternate_allele TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe USP44,caecum,carcinoma,0,1 USP44 NM_032147 exon2 c.G488T p.R163L CATGTTCGAAAGA . 127.0 49.0 119.0 0.0 . 83 . . Atlas-SNP MYO16 23026 hgsc.bcm.edu hg19 13 109777634 109777634 + Missense_Mutation SNP G G A rs375704783 TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . MYO16 NM_001198950 exon30 c.G3710A p.R1237H GGCTCCGTAGTGA . 294.0 32.0 514.0 0.0 . 285 . . Atlas-SNP PSMB5 5693 hgsc.bcm.edu hg19 14 23503937 23503937 + Missense_Mutation SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PSMB5 NM_001144932 exon1 c.C154T p.P52S TTCCTGGCTCTTC . 59.0 15.0 64.0 0.0 . 31 . . Atlas-SNP AKAP6 9472 hgsc.bcm.edu hg19 14 33014464 33014464 + Missense_Mutation SNP A A T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . AKAP6 NM_004274 exon4 c.A605T p.D202V AAGTGGATGACTC . 68.0 15.0 163.0 0.0 . 308 . . Atlas-SNP RALGAPA1 253959 hgsc.bcm.edu hg19 14 36211696 36211696 + Missense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . RALGAPA1 NM_194301 exon11 c.G1327A p.E443K TTTCCTCTTGTTG . 207.0 37.0 351.0 0.0 . 289 . . Atlas-SNP CATSPERB 79820 hgsc.bcm.edu hg19 14 92076871 92076871 + Missense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . CATSPERB NM_024764 exon21 c.G2551A p.G851R GAACTCCACTAAT . 40.0 8.0 75.0 0.0 . 114 . . Atlas-SNP RASGRP1 10125 hgsc.bcm.edu hg19 15 38798090 38798090 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . RASGRP1 NM_001128602 exon10 c.A1274G p.E425G TAGATTTCATCCT . 71.0 29.0 101.0 0.0 . 50 . . Atlas-SNP RHOV 171177 hgsc.bcm.edu hg19 15 41165411 41165411 + Missense_Mutation SNP A A G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . RHOV NM_133639 exon3 c.T556C p.C186R CTGAGCACTCAAG . 74.0 18.0 87.0 0.0 . 6 . . Atlas-SNP VPS18 57617 hgsc.bcm.edu hg19 15 41191757 41191757 + Silent SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . VPS18 NM_020857 exon4 c.C741T p.L247L AGGGCTCTTTGCA . 24.0 12.0 25.0 0.0 . 67 . . Atlas-SNP NKD1 85407 hgsc.bcm.edu hg19 16 50667280 50667280 + Missense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . NKD1 NM_033119 exon10 c.G1001T p.R334L AGCAACGGCTCCG . 232.0 67.0 309.0 0.0 . 43 . . Atlas-SNP CX3CL1 6376 hgsc.bcm.edu hg19 16 57416592 57416592 + Missense_Mutation SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . CX3CL1 NM_002996 exon3 c.G842A p.G281D GGCCTGGCAGCAT . 67.0 23.0 79.0 0.0 . 27 . . Atlas-SNP AGRP 181 hgsc.bcm.edu hg19 16 67517252 67517252 + Missense_Mutation SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . AGRP NM_001138 exon2 c.C50T p.A17V CGCGTGGCAGGCA . 95.0 16.0 92.0 0.0 . 8 . . Atlas-SNP ESRP2 80004 hgsc.bcm.edu hg19 16 68265859 68265859 + Missense_Mutation SNP A A C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . ESRP2 NM_024939 exon10 c.T1145G p.L382R ACAAAGAGCAGCC . 118.0 17.0 134.0 0.0 . 118 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11660954 11660954 + Missense_Mutation SNP T T A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . DNAH9 NM_001372 exon35 c.T6940A p.L2314I GCCAACTTAACCA . 91.0 51.0 145.0 0.0 . 695 . . Atlas-SNP MYOCD 93649 hgsc.bcm.edu hg19 17 12656632 12656632 + Missense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . MYOCD NM_001146312 exon10 c.C2027T p.S676L TCTCCTCGCCCAT . 32.0 20.0 74.0 0.0 . 291 . . Atlas-SNP KRTAP4-5 85289 hgsc.bcm.edu hg19 17 39305699 39305699 + Silent SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . KRTAP4-5 NM_033188 exon1 c.A321G p.R107R CTGGGGTCTGCAG . 53.0 26.0 80.0 0.0 . 34 . . Atlas-SNP HLF 3131 hgsc.bcm.edu hg19 17 53345280 53345280 + Missense_Mutation SNP A A G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . HLF NM_002126 exon2 c.A284G p.N95S CAGAAAATGGCAT . 124.0 38.0 155.0 0.0 . 39 . . Atlas-SNP JMJD6 23210 hgsc.bcm.edu hg19 17 74722553 74722553 + Missense_Mutation SNP T T G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . JMJD6 NM_001081461 exon1 c.A5C p.N2T TTGTGGTTCATTC . 56.0 32.0 60.0 0.0 . 57 . . Atlas-SNP ANKRD12 23253 hgsc.bcm.edu hg19 18 9208736 9208736 + Missense_Mutation SNP A A G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . ANKRD12 NM_015208 exon5 c.A386G p.Y129C TTGGTTATCCACT . 250.0 65.0 297.0 0.0 . 167 . . Atlas-SNP KATNAL2 83473 hgsc.bcm.edu hg19 18 44580795 44580795 + Missense_Mutation SNP A A T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . KATNAL2 NM_031303 exon3 c.A102T p.R34S AAGTAGAGGGAAG . 227.0 41.0 347.0 0.0 . 64 . . Atlas-SNP ATP9B 374868 hgsc.bcm.edu hg19 18 77137276 77137276 + Missense_Mutation SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . ATP9B NM_198531 exon30 c.C3337A p.L1113M ACCTTCCTGTGGA . 39.0 9.0 71.0 0.0 . 96 . . Atlas-SNP ZNF560 147741 hgsc.bcm.edu hg19 19 9577581 9577581 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . ZNF560 NM_152476 exon10 c.A2042G p.E681G GTCTTCTCTGCTG . 62.0 25.0 96.0 0.0 . 162 . . Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11145796 11145796 + Missense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe SMARCA4_ENST00000358026,NS,carcinoma,0,2 SMARCA4 NM_003072 exon29 c.G4158T p.K1386N GGAGAAGCAGTGG . 111.0 38.0 169.0 0.0 . 502 . . Atlas-SNP OR10H2 26538 hgsc.bcm.edu hg19 19 15839113 15839113 + Missense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . OR10H2 NM_013939 exon1 c.C260T p.S87F TGCTGTCCACCCA . 127.0 19.0 184.0 0.0 . 59 . . Atlas-SNP CERS1 10715 hgsc.bcm.edu hg19 19 18991094 18991094 + Missense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . CERS1 NM_198207 exon4 c.C741A p.F247L GAAGCCGAAGCTG . 31.0 14.0 41.0 0.0 . 19 . . Atlas-SNP CEBPA 1050 hgsc.bcm.edu hg19 19 33792755 33792755 + Missense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . CEBPA NM_004364 exon1 c.C566A p.P189H TGCGAGGGCGGCG . 226.0 25.0 209.0 0.0 . 986 . . Atlas-SNP CEBPA 1050 hgsc.bcm.edu hg19 19 33792759 33792759 + Missense_Mutation SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . CEBPA NM_004364 exon1 c.C562T p.P188S AGGGCGGCGGCGG . 227.0 20.0 222.0 0.0 . 986 . . Atlas-SNP NCR1 9437 hgsc.bcm.edu hg19 19 55417692 55417692 + Nonsense_Mutation SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . NCR1 NM_001145458 exon2 c.C70T p.Q24X CAGCAGCGTGAGT . 30.0 16.0 35.0 0.0 . 60 . . Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55493985 55493985 + Missense_Mutation SNP G G T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . NLRP2 NM_017852 exon6 c.G919T p.D307Y TGCGGGGACTGGG . 52.0 17.0 75.0 0.0 . 161 . . Atlas-SNP MICALL1 85377 hgsc.bcm.edu hg19 22 38318092 38318092 + Missense_Mutation SNP G G A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . MICALL1 NM_033386 exon6 c.G683A p.G228E GGTCGGGGACCAG . 131.0 54.0 173.0 0.0 . 53 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32862919 32862919 + Missense_Mutation SNP C C A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . DMD NM_004006 exon4 c.G245T p.R82L AAAACCCGCAGTG . 44.0 28.0 62.0 0.0 . 2127 . . Atlas-SNP RP2 6102 hgsc.bcm.edu hg19 X 46713384 46713384 + Silent SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . RP2 NM_006915 exon2 c.T576C p.D192D AGAAGATGCTGTG . 55.0 32.0 115.0 0.0 . 37 . . Atlas-SNP FAM133A 286499 hgsc.bcm.edu hg19 X 92964868 92964868 + Silent SNP A A G novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . FAM133A NM_173698 exon4 c.A450G p.E150E ATCAGAATCAGAG . 48.0 26.0 81.0 0.0 . 37 . . Atlas-SNP ATP2B3 492 hgsc.bcm.edu hg19 X 152814216 152814216 + Silent SNP C C T novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . ATP2B3 NM_001001344 exon8 c.C1242T p.F414F ATACTTCGTGAAG . 30.0 19.0 59.0 0.0 . 552 . . Atlas-SNP PCDH11Y 83259 hgsc.bcm.edu hg19 Y 4967388 4967388 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . PCDH11Y NM_032972 exon2 c.T1769C p.V590A TCTTTGTAAGCAT . 115.0 43.0 192.0 0.0 . 163 . . Atlas-SNP ND2 0 hgsc.bcm.edu hg19 MT 5116 5116 + Missense_Mutation SNP T T C novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . . ENST00000361453 exon1 c.T647C p.F216S CCGCATTCCTACT . 37.0 36.0 19.0 0.0 . . . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578237 7578238 + Frame_Shift_Del DEL CT CT - novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe TP53_ENST00000545858,temporoparietal,glioma,+1,1 TP53 NM_001126112 exon6 c.612_613del p.204_205del . . 114.0 63.0 163.0 0.0 . 33396 . . Atlas-Indel,Pindel STRIP1 85369 hgsc.bcm.edu hg19 1 110596387 110596387 + Frame_Shift_Del DEL C C - novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . STRIP1 NM_033088 exon21 c.2366delA p.N789fs . . 56.0 25.0 85.0 0.0 . 1 . . Atlas-Indel,Pindel FAM171B 165215 hgsc.bcm.edu hg19 2 187618658 187618673 + Splice_Site DEL TTACATACCTTTTTAG TTACATACCTTTTTAG - novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 TTACATACCTTTTTAG TTACATACCTTTTTAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . FAM171B . . . . . . 58.0 18.0 98.0 0.0 . 146 . . Atlas-Indel,Pindel SESTD1 91404 hgsc.bcm.edu hg19 2 179979934 179979935 + Frame_Shift_Ins INS - - A novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe SESTD1,colon,carcinoma,0,1 SESTD1 NM_178123 exon16 c.1697_1698insT p.C566fs . . 76.0 10.0 90.0 0.0 . 66 . . Atlas-INDEL GRK7 131890 hgsc.bcm.edu hg19 3 141499234 141499234 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . GRK7 NM_139209 exon2 c.630delG p.V210fs . . 135.0 41.0 161.0 0.0 . 65 . . Atlas-Indel,Pindel CMYA5 202333 hgsc.bcm.edu hg19 5 79026111 79026111 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . CMYA5 NM_153610 exon2 c.1522delG p.E508fs . . 164.0 27.0 180.0 0.0 . 643 . . Pindel ZNF860 344787 hgsc.bcm.edu hg19 3 32030993 32030994 + In_Frame_Ins INS - - TGATCGAAGGCATCCTGGAAACAAGCCTATCAAAGATCAGCTTGG novel TCGA-DD-AADN-01A-11D-A40R-10 TCGA-DD-AADN-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq b5fdeb5e-38a1-4da0-b372-045b08809738 9a4390a9-935c-4d95-aa5e-55b7dcfb8fbe . ZNF860 NM_001137674 exon2 c.422_423insTGATCGAAGGCATCCTGGAAACAAGCCTATCAAAGATCAGCTTGG p.Y141delinsYDRRHPGNKPIKDQLG . . 388.0 25.0 287.0 0.0 . 96 . . Pindel