Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm METTL18 92342 hgsc.bcm.edu hg19 1 169761971 169761971 + Missense_Mutation SNP A A C novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . METTL18 NM_033418 exon2 c.T866G p.L289R AGAATGAGATCAT . 352.0 102.0 222.0 0.0 . 23 . . Atlas-SNP KCTD3 51133 hgsc.bcm.edu hg19 1 215768702 215768702 + Silent SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . KCTD3 NM_016121 exon10 c.G822A p.V274V AGGAGTGTTCAGC . 113.0 36.0 77.0 0.0 . 101 . . Atlas-SNP EML4 27436 hgsc.bcm.edu hg19 2 42557132 42557132 + Missense_Mutation SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . EML4 NM_019063 exon23 c.G2731A p.E911K ACAGCTGAAGAGG . 102.0 46.0 101.0 0.0 . 92 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168105919 168105919 + Missense_Mutation SNP T T A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . XIRP2 NM_152381 exon9 c.T8017A p.C2673S TCAGCTTGCGAAA . 389.0 197.0 328.0 1.0 . 914 . . Atlas-SNP NFE2L2 4780 hgsc.bcm.edu hg19 2 178098804 178098804 + Missense_Mutation SNP C C A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 NFE2L2,NS,carcinoma,0,4 NFE2L2 NM_006164 exon2 c.G241T p.G81C ATTCACCTGTCTC . 85.0 39.0 70.0 0.0 . 225 . . Atlas-SNP GULP1 51454 hgsc.bcm.edu hg19 2 189434772 189434772 + Silent SNP A A G novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . GULP1 NM_016315 exon9 c.A534G p.T178T AGAAACAGAAAAT . 516.0 167.0 395.0 0.0 . 35 . . Atlas-SNP SLC4A3 6508 hgsc.bcm.edu hg19 2 220493162 220493162 + Silent SNP A A T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . SLC4A3 NM_005070 exon3 c.A87T p.P29P AAGTCCAGACGTG . 222.0 94.0 198.0 0.0 . 144 . . Atlas-SNP LARS2 23395 hgsc.bcm.edu hg19 3 45557708 45557708 + Missense_Mutation SNP A A G novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . LARS2 NM_015340 exon17 c.A1984G p.I662V GACACGATTCGGC . 183.0 64.0 166.0 0.0 . 48 . . Atlas-SNP CACNA2D2 9254 hgsc.bcm.edu hg19 3 50403525 50403525 + Missense_Mutation SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . CACNA2D2 NM_001174051 exon33 c.C2800T p.R934C CCTTGCGGGTGTA . 76.0 29.0 90.0 0.0 . 82 . . Atlas-SNP DOCK3 1795 hgsc.bcm.edu hg19 3 51418626 51418626 + Missense_Mutation SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . DOCK3 NM_004947 exon53 c.G5729A p.R1910H CACCTCGCACTGA . 100.0 44.0 75.0 0.0 . 397 . . Atlas-SNP FAM208A 23272 hgsc.bcm.edu hg19 3 56674029 56674029 + Missense_Mutation SNP G G T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . FAM208A NM_001112736 exon16 c.C2749A p.L917M GAATCAGTTTCCA . 147.0 27.0 104.0 0.0 . 113 . . Atlas-SNP RYBP 23429 hgsc.bcm.edu hg19 3 72427650 72427650 + Silent SNP T T A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . RYBP NM_012234 exon4 c.A543T p.A181A TGACCCTGCACTG . 133.0 52.0 130.0 0.0 . 13 . . Atlas-SNP NLGN1 22871 hgsc.bcm.edu hg19 3 173996998 173996998 + Missense_Mutation SNP G G A rs371578371 TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . NLGN1 NM_014932 exon6 c.G1207A p.D403N GATAGCGATGATG . 159.0 66.0 157.0 0.0 . 209 . . Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195512150 195512150 + Missense_Mutation SNP C C A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . MUC4 NM_018406 exon2 c.G6301T p.D2101Y AAGCGTCGGTGAC . 403.0 59.0 294.0 0.0 . 1505 . . Atlas-SNP CRMP1 1400 hgsc.bcm.edu hg19 4 5841321 5841321 + Missense_Mutation SNP G G T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . CRMP1 NM_001014809 exon9 c.C1238A p.A413E AACGCCGCAGCCT . 75.0 31.0 62.0 0.0 . 118 . . Atlas-SNP CRMP1 1400 hgsc.bcm.edu hg19 4 5841322 5841322 + Missense_Mutation SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . CRMP1 NM_001014809 exon9 c.G1237A p.A413T ACGCCGCAGCCTT . 76.0 30.0 63.0 0.0 . 118 . . Atlas-SNP KIAA1239 57495 hgsc.bcm.edu hg19 4 37246800 37246800 + Silent SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . KIAA1239 NM_001144990 exon1 c.C111T p.A37A GCCCGCCGGCCGC . 81.0 4.0 70.0 0.0 . 79 . . Atlas-SNP PCDHGA4 56111 hgsc.bcm.edu hg19 5 140735877 140735877 + Silent SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . PCDHGA4 NM_018917 exon1 c.C1110T p.N370N TTTCAACGTGCAT . 112.0 46.0 84.0 0.0 . 150 . . Atlas-SNP ERVFRD-1 405754 hgsc.bcm.edu hg19 6 11104810 11104810 + Missense_Mutation SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ERVFRD-1 NM_207582 exon2 c.G734A p.G245E TTAGCTCCCTTGG . 61.0 26.0 60.0 0.0 . 41 . . Atlas-SNP OR5V1 81696 hgsc.bcm.edu hg19 6 29323627 29323627 + Missense_Mutation SNP C C A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . OR5V1 NM_030876 exon1 c.G346T p.A116S TTGCTGCCAGTAG . 125.0 48.0 117.0 0.0 . 63 . . Atlas-SNP PI16 221476 hgsc.bcm.edu hg19 6 36930828 36930828 + Missense_Mutation SNP C C A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 PI16,NS,neuroblastoma,0,1 PI16 NM_001199159 exon6 c.C710A p.A237E CCCTAGCAACGGG . 153.0 74.0 137.0 0.0 . 50 . . Atlas-SNP KCNK17 89822 hgsc.bcm.edu hg19 6 39271861 39271861 + Nonsense_Mutation SNP G G T rs140102103 alternate_allele TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . KCNK17 NM_001135111 exon4 c.C560A p.S187X AGGCCCGAGAGGA . 87.0 4.0 68.0 0.0 . 61 . G|1.000;A|0.000 Atlas-SNP PRICKLE4 29964 hgsc.bcm.edu hg19 6 41751951 41751951 + Missense_Mutation SNP A A T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . PRICKLE4 NM_013397 exon4 c.A215T p.Q72L TCCTGCAGCAACT . 104.0 47.0 87.0 0.0 . 29 . . Atlas-SNP ABCB4 5244 hgsc.bcm.edu hg19 7 87074258 87074258 + Missense_Mutation SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ABCB4 NM_018850 exon10 c.G1039A p.V347I GGCCAACACTGAA . 1941.0 856.0 1716.0 1.0 . 177 . . Atlas-SNP SAMD9 54809 hgsc.bcm.edu hg19 7 92731597 92731597 + Missense_Mutation SNP C C A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . SAMD9 NM_001193307 exon2 c.G3814T p.D1272Y ATTCATCAAAAAA . 189.0 72.0 219.0 0.0 . 239 . . Atlas-SNP CNTNAP2 26047 hgsc.bcm.edu hg19 7 146829391 146829391 + Missense_Mutation SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 CNTNAP2,NS,carcinoma,0,1 CNTNAP2 NM_014141 exon8 c.G1138A p.A380T TTCAACGCTACAA . 109.0 38.0 79.0 0.0 . 392 . . Atlas-SNP LZTS1 11178 hgsc.bcm.edu hg19 8 20112506 20112506 + Missense_Mutation SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 LZTS1,NS,carcinoma,0,1 LZTS1 NM_021020 exon1 c.G187A p.E63K AGTCTTCGCTCTT . 92.0 42.0 117.0 0.0 . 72 . . Atlas-SNP SLC24A2 25769 hgsc.bcm.edu hg19 9 19786033 19786033 + Missense_Mutation SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 SLC24A2,NS,carcinoma,0,1 SLC24A2 NM_001193288 exon1 c.G832A p.V278I TGAAAACCACATA . 125.0 49.0 93.0 0.0 . 93 . . Atlas-SNP ACO1 48 hgsc.bcm.edu hg19 9 32430520 32430520 + Silent SNP A A T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ACO1 NM_002197 exon14 c.A1674T p.I558I AGTAATAGCATAT . 175.0 81.0 143.0 0.0 . 149 . . Atlas-SNP AGTPBP1 23287 hgsc.bcm.edu hg19 9 88272416 88272416 + Silent SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . AGTPBP1 NM_015239 exon10 c.C843T p.N281N CTTGATGTTTGTA . 108.0 58.0 98.0 0.0 . 128 . . Atlas-SNP FIBCD1 84929 hgsc.bcm.edu hg19 9 133799154 133799154 + Missense_Mutation SNP G G T rs369690143 alternate_allele TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . FIBCD1 NM_001145106 exon5 c.C826A p.R276S CCGTGCGCATGTC . 127.0 43.0 118.0 0.0 . 34 . . Atlas-SNP FAM163B 642968 hgsc.bcm.edu hg19 9 136444248 136444248 + Silent SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . FAM163B NM_001080515 exon2 c.C397T p.L133L GGGGCAGCTCCAC . 124.0 47.0 84.0 0.0 . 7 . . Atlas-SNP PHPT1 29085 hgsc.bcm.edu hg19 9 139744507 139744507 + Missense_Mutation SNP G G T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . PHPT1 NM_001135861 exon2 c.G203T p.G68V AGCAAGGCTGCGA . 92.0 33.0 80.0 0.0 . 14 . . Atlas-SNP DDB1 1642 hgsc.bcm.edu hg19 11 61090560 61090560 + Missense_Mutation SNP T T C rs367862166 TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . DDB1 NM_001923 exon8 c.A928G p.I310V CAGCAATAGAGGT . 133.0 57.0 140.0 0.0 . 100 . . Atlas-SNP ARHGEF17 9828 hgsc.bcm.edu hg19 11 73021870 73021870 + Silent SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ARHGEF17 NM_014786 exon1 c.G2187A p.E729E AGGGGAGGCCTAC . 33.0 10.0 30.0 0.0 . 117 . . Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132547105 132547105 + Silent SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . EP400 NM_015409 exon47 c.G8193A p.Q2731Q GCAGCAGCAGCAG . 111.0 22.0 55.0 0.0 . 370 . . Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132547108 132547108 + Silent SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . EP400 NM_015409 exon47 c.G8196A p.Q2732Q GCAGCAGCAGCAG . 113.0 27.0 59.0 0.0 . 370 . . Atlas-SNP TGDS 23483 hgsc.bcm.edu hg19 13 95248352 95248352 + Silent SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . TGDS NM_014305 exon1 c.C39T p.P13P GCCGCCGGGAAGA . 179.0 78.0 167.0 0.0 . 24 . . Atlas-SNP FERMT2 10979 hgsc.bcm.edu hg19 14 53331148 53331148 + Missense_Mutation SNP G G A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . FERMT2 NM_001135000 exon12 c.C1573T p.R525C GATAGCGGGGAGA . 106.0 48.0 101.0 0.0 . 59 . . Atlas-SNP SNW1 22938 hgsc.bcm.edu hg19 14 78187159 78187159 + Missense_Mutation SNP C C G novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . SNW1 NM_012245 exon12 c.G1143C p.Q381H ATTTCTCTGAAGT . 112.0 33.0 118.0 0.0 . 44 . . Atlas-SNP CEP128 145508 hgsc.bcm.edu hg19 14 80993294 80993294 + Silent SNP T T C novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . CEP128 NM_152446 exon22 c.A2991G p.G997G ATATCTTCCATCA . 56.0 17.0 51.0 0.0 . 146 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105407441 105407441 + Missense_Mutation SNP T T C novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . AHNAK2 NM_138420 exon7 c.A14347G p.I4783V AGAGAATAGAAGA . 171.0 75.0 144.0 0.0 . 719 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105408464 105408464 + Missense_Mutation SNP T T C rs377277155 alternate_allele TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . AHNAK2 NM_138420 exon7 c.A13324G p.S4442G GCGTACTGTCCAG . 111.0 48.0 103.0 0.0 . 719 . . Atlas-SNP ACAN 176 hgsc.bcm.edu hg19 15 89401482 89401482 + Missense_Mutation SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ACAN NM_001135 exon12 c.C5666T p.S1889F TTACATCCCAGAC . 73.0 28.0 44.0 0.0 . 220 . . Atlas-SNP MTHFSD 64779 hgsc.bcm.edu hg19 16 86582083 86582083 + Missense_Mutation SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . MTHFSD NM_001159377 exon4 c.G338A p.C113Y GTGGCACATTTTC . 69.0 43.0 117.0 0.0 . 52 . . Atlas-SNP PRPF8 10594 hgsc.bcm.edu hg19 17 1582362 1582362 + Silent SNP C C A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . PRPF8 NM_006445 exon11 c.G1548T p.L516L CAGGTGCAGGTAG . 55.0 29.0 56.0 0.0 . 169 . . Atlas-SNP MYH13 8735 hgsc.bcm.edu hg19 17 10210383 10210383 + Splice_Site SNP T T C novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 MYH13_ENST00000252172,NS,carcinoma,0,2 MYH13 NM_003802 exon37 c.5170-2A>G . GTGTTCTACAAGA . 43.0 17.0 58.0 0.0 . 533 . . Atlas-SNP PPAN 56342 hgsc.bcm.edu hg19 19 10220893 10220893 + Missense_Mutation SNP G G C novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . PPAN NM_020230 exon8 c.G793C p.A265P ATGCGGGCCCAGC . 106.0 43.0 103.0 0.0 . 43 . . Atlas-SNP ZNF420 147923 hgsc.bcm.edu hg19 19 37618604 37618604 + Missense_Mutation SNP A A C novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ZNF420 NM_144689 exon5 c.A711C p.Q237H CTCACAACTTACC . 62.0 18.0 88.0 0.0 . 71 . . Atlas-SNP CYP2B6 1555 hgsc.bcm.edu hg19 19 41497305 41497305 + Missense_Mutation SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . CYP2B6 NM_000767 exon1 c.C95T p.P32L TCCCACCAGGGCC . 88.0 37.0 84.0 0.0 . 79 . . Atlas-SNP ZNF331 55422 hgsc.bcm.edu hg19 19 54080094 54080094 + Missense_Mutation SNP C C A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ZNF331 NM_001253801 exon5 c.C280A p.R94S CCACAGCGCTCCA . 202.0 97.0 193.0 0.0 . 66 . . Atlas-SNP PCSK2 5126 hgsc.bcm.edu hg19 20 17462588 17462588 + Missense_Mutation SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . PCSK2 NM_002594 exon12 c.C1790T p.A597V AGAGTGCCCCGTA . 98.0 29.0 101.0 0.0 . 112 . . Atlas-SNP PLTP 5360 hgsc.bcm.edu hg19 20 44538643 44538643 + Missense_Mutation SNP C C T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . PLTP NM_182676 exon4 c.G267A p.M89I TTGAAGCATCAGC . 76.0 37.0 93.0 0.0 . 49 . . Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 41551019 41551019 + Missense_Mutation SNP A A G novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . DSCAM NM_001271534 exon15 c.T2782C p.S928P CCCAGGAGTCTTT . 126.0 47.0 95.0 0.0 . 347 . . Atlas-SNP ARVCF 421 hgsc.bcm.edu hg19 22 19965537 19965537 + Missense_Mutation SNP C C A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ARVCF NM_001670 exon8 c.G1642T p.D548Y GCGCGTCCACCAG . 55.0 21.0 50.0 0.0 . 54 . . Atlas-SNP TIMP1 7076 hgsc.bcm.edu hg19 X 47445002 47445002 + Missense_Mutation SNP G G T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . TIMP1 NM_003254 exon5 c.G389T p.S130I GGAACAGCCTGAG . 197.0 84.0 173.0 0.0 . 12 . . Atlas-SNP PQBP1 10084 hgsc.bcm.edu hg19 X 48759212 48759212 + Missense_Mutation SNP T T G novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . PQBP1 NM_001167989 exon4 c.T185G p.L62R GCGGGCTCCCTTA . 105.0 28.0 98.0 0.0 . 24 . . Atlas-SNP CACNA1F 778 hgsc.bcm.edu hg19 X 49072969 49072969 + Missense_Mutation SNP G G C novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . CACNA1F NM_005183 exon27 c.C3142G p.P1048A CATCTGGGTATAC . 299.0 112.0 250.0 0.0 . 218 . . Atlas-SNP IL1RAPL2 26280 hgsc.bcm.edu hg19 X 104984619 104984619 + Missense_Mutation SNP A A T novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . IL1RAPL2 NM_017416 exon8 c.A983T p.N328I TGGCGAATTATAC . 440.0 189.0 347.0 0.0 . 105 . . Atlas-SNP CXorf56 63932 hgsc.bcm.edu hg19 X 118699267 118699267 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . CXorf56 NM_001170570 exon1 c.G52T p.E18X ATTCCTCCCGGTC . 275.0 97.0 234.0 0.0 . 26 . . Atlas-SNP CD40LG 959 hgsc.bcm.edu hg19 X 135741541 135741541 + Silent SNP T T C novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . CD40LG NM_000074 exon5 c.T753C p.T251T TGGCACTGGCTTC . 1401.0 529.0 1240.0 2.0 . 46 . . Atlas-SNP ARMCX6 54470 hgsc.bcm.edu hg19 X 100870760 100870760 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ARMCX6 NM_019007 exon3 c.852delC p.L284fs . . 158.0 25.0 125.0 0.0 . 21 . . Atlas-INDEL EHMT2 10919 hgsc.bcm.edu hg19 6 31855974 31855974 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . EHMT2 NM_006709 exon13 c.1590delG p.M530fs . . 133.0 66.0 110.0 0.0 . 45 . . Atlas-INDEL DST 667 hgsc.bcm.edu hg19 6 56480983 56480983 + Frame_Shift_Del DEL T T - novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . DST NM_001723 exon24 c.7283delC p.T2428fs . . 95.0 34.0 88.0 0.0 . 1427 . . Atlas-INDEL FN1 2335 hgsc.bcm.edu hg19 2 216299510 216299513 + Frame_Shift_Del DEL ATTT ATTT - novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 ATTT ATTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . FN1 NM_212476 exon2 c.184_187del p.62_63del . . 77.0 36.0 93.0 0.0 . 521 . . Atlas-INDEL ATP6V1D 51382 hgsc.bcm.edu hg19 14 67826386 67826386 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ATP6V1D NM_015994 exon1 c.31delC p.P11fs . . 71.0 37.0 57.0 0.0 . 21 . . Atlas-INDEL MCM3 4172 hgsc.bcm.edu hg19 6 52141926 52141940 + In_Frame_Del DEL GGTGGGGATAGCTCG GGTGGGGATAGCTCG - novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 GGTGGGGATAGCTCG GGTGGGGATAGCTCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . MCM3 NM_002388 exon8 c.1226_1240del p.409_414del . . 66.0 13.0 53.0 0.0 . 63 . . Atlas-INDEL ACAD11 84129 hgsc.bcm.edu hg19 3 132337613 132337613 + Frame_Shift_Del DEL T T - novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . ACAD11 NM_032169 exon11 c.1280delT p.M427fs . . 227.0 94.0 188.0 0.0 . 78 . . Atlas-INDEL C1orf35 79169 hgsc.bcm.edu hg19 1 228290360 228290395 + Frame_Shift_Del DEL GTGGGCTGCTTCTTCACGTTCTTGTAGCCACTGCGA GTGGGCTGCTTCTTCACGTTCTTGTAGCCACTGCGA - novel TCGA-DD-AADJ-01A-11D-A40R-10 TCGA-DD-AADJ-10A-01D-A40U-10 GTGGGCTGCTTCTTCACGTTCTTGTAGCCACTGCGA GTGGGCTGCTTCTTCACGTTCTTGTAGCCACTGCGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 61b59c1e-a279-4c80-ab24-c01048f2a295 c1da5095-b907-4c39-a7b6-4c603e64b113 . C1orf35 NM_024319 exon3 c.246_276del p.82_92del . . 72.0 13.0 73.0 0.0 . 17 . . Atlas-INDEL