Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm NPHP4 261734 hgsc.bcm.edu hg19 1 6029260 6029260 + Silent SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . NPHP4 NM_015102 exon4 c.C339T p.V113V CTCAGCGACCACT . 148.0 59.0 115.0 0.0 . 119 . . Atlas-SNP CAMTA1 23261 hgsc.bcm.edu hg19 1 7796520 7796520 + Missense_Mutation SNP G G C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CAMTA1 NM_015215 exon13 c.G3183C p.K1061N CTCAAAGACTTTC . 163.0 7.0 160.0 0.0 . 226 . . Atlas-SNP VPS13D 55187 hgsc.bcm.edu hg19 1 12359278 12359278 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b VPS13D,NS,carcinoma,0,1 VPS13D NM_015378 exon25 c.G6053T p.R2018L CCCAGCGCTGTTC . 87.0 4.0 76.0 0.0 . 316 . . Atlas-SNP C1orf158 93190 hgsc.bcm.edu hg19 1 12820859 12820859 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b C1orf158,NS,lymphoid_neoplasm,0,2 C1orf158 NM_152290 exon4 c.G560T p.R187L CCCATCGCCTGCA . 76.0 18.0 70.0 0.0 . 28 . . Atlas-SNP PRAMEF19 645414 hgsc.bcm.edu hg19 1 13475241 13475241 + Silent SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b PRAMEF18,NS,carcinoma,0,1 PRAMEF19 NM_001099790 exon3 c.G888A p.E296E CAATGTCTCCAAC . 272.0 17.0 263.0 0.0 . 6 . . Atlas-SNP PHC2 1912 hgsc.bcm.edu hg19 1 33832725 33832725 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . PHC2 NM_198040 exon6 c.T968C p.I323T GGTGCAATGAGGG . 74.0 5.0 62.0 0.0 . 78 . . Atlas-SNP FOXE3 2301 hgsc.bcm.edu hg19 1 47882609 47882609 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . FOXE3 NM_012186 exon1 c.C622A p.P208T GCCGGACCGGGCC . 26.0 8.0 21.0 0.0 . 8 . . Atlas-SNP USP24 23358 hgsc.bcm.edu hg19 1 55624658 55624658 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . USP24 NM_015306 exon10 c.C1120T p.R374C GGAAGCGCATGCA . 253.0 88.0 242.0 0.0 . 323 . . Atlas-SNP INADL 10207 hgsc.bcm.edu hg19 1 62550246 62550246 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . INADL NM_176877 exon33 c.G4303A p.E1435K GGACAGGAAATGA . 150.0 10.0 131.0 0.0 . 179 . . Atlas-SNP CSDE1 7812 hgsc.bcm.edu hg19 1 115267860 115267860 + Missense_Mutation SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CSDE1 NM_001242891 exon16 c.G1873A p.V625M TGTTCACTTTTTC . 128.0 35.0 118.0 0.0 . 145 . . Atlas-SNP RPTN 126638 hgsc.bcm.edu hg19 1 152128252 152128252 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . RPTN NM_001122965 exon3 c.G1323T p.Q441H GTCTGGCTGACCA . 199.0 44.0 108.0 0.0 . 123 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186113435 186113435 + Silent SNP A A C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . HMCN1 NM_031935 exon90 c.A14055C p.A4685A TGGAGCAGAAACA . 165.0 9.0 123.0 0.0 . 797 . . Atlas-SNP NLRP3 114548 hgsc.bcm.edu hg19 1 247587388 247587388 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . NLRP3 NM_183395 exon3 c.C643A p.H215N GATGAGCATTCTG . 223.0 37.0 172.0 0.0 . 286 . . Atlas-SNP TPO 7173 hgsc.bcm.edu hg19 2 1499810 1499810 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TPO NM_001206744 exon12 c.C2056A p.L686M CGTGAGCTGGAGA . 67.0 22.0 61.0 0.0 . 224 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21228569 21228569 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . APOB NM_000384 exon26 c.A11171G p.K3724R AAAACTTTTACAG . 83.0 31.0 90.0 0.0 . 761 . . Atlas-SNP HEATR5B 54497 hgsc.bcm.edu hg19 2 37297440 37297440 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . HEATR5B NM_019024 exon7 c.A860G p.K287R CCGCTCTTTAAGA . 136.0 9.0 135.0 0.0 . 185 . . Atlas-SNP ZFP36L2 678 hgsc.bcm.edu hg19 2 43452453 43452453 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ZFP36L2 NM_006887 exon2 c.G490T p.E164X CGCTCTCCTCGAA . 58.0 21.0 36.0 0.0 . 56 . . Atlas-SNP USP34 9736 hgsc.bcm.edu hg19 2 61542016 61542016 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . USP34 NM_014709 exon24 c.A3376G p.I1126V CATTAATATAATA . 287.0 12.0 298.0 0.0 . 334 . . Atlas-SNP TEKT4 150483 hgsc.bcm.edu hg19 2 95542383 95542383 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TEKT4 NM_144705 exon6 c.C1177A p.L393I CGCAACCTCGAGG . 23.0 8.0 19.0 0.0 . 72 . . Atlas-SNP CNGA3 1261 hgsc.bcm.edu hg19 2 99012463 99012463 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CNGA3 NM_001298 exon8 c.G830T p.R277L TCAACCGCCTACT . 200.0 48.0 192.0 0.0 . 118 . . Atlas-SNP ARHGEF4 50649 hgsc.bcm.edu hg19 2 131801059 131801059 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ARHGEF4 NM_032995 exon11 c.T1502A p.I501N AACTCATCTACTC . 93.0 30.0 82.0 0.0 . 89 . . Atlas-SNP HOXD4 3233 hgsc.bcm.edu hg19 2 177016412 177016412 + Missense_Mutation SNP C C G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b HOXD4,NS,carcinoma,0,1 HOXD4 NM_014621 exon1 c.C51G p.F17L CAAGTTCCCTCCG . 178.0 72.0 177.0 0.0 . 32 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196765131 196765131 + Silent SNP G G T rs376085913 alternate_allele TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . DNAH7 NM_018897 exon28 c.C4423A p.R1475R GTGGTCGAGCAGT . 188.0 71.0 183.0 0.0 . 512 . . Atlas-SNP KCTD18 130535 hgsc.bcm.edu hg19 2 201357908 201357908 + Missense_Mutation SNP G G T rs146790839 alternate_allele TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . KCTD18 NM_152387 exon6 c.C751A p.P251T GAATTGGAGCCAT . 78.0 28.0 80.0 0.0 . 44 . G|1.000;A|0.000 Atlas-SNP BMPR2 659 hgsc.bcm.edu hg19 2 203383670 203383670 + Silent SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . BMPR2 NM_001204 exon6 c.G747A p.V249V CAGAGTGCCTTTG . 137.0 9.0 132.0 0.0 . 142 . . Atlas-SNP MDH1B 130752 hgsc.bcm.edu hg19 2 207622077 207622077 + Missense_Mutation SNP A A T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . MDH1B NM_001039845 exon3 c.T154A p.C52S TTTCACACACATC . 41.0 19.0 55.0 0.0 . 89 . . Atlas-SNP PRKAG3 53632 hgsc.bcm.edu hg19 2 219689003 219689003 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . PRKAG3 NM_017431 exon12 c.T1295C p.L432P CAGGAAAGGACTC . 133.0 7.0 137.0 0.0 . 47 . . Atlas-SNP KCNJ13 3769 hgsc.bcm.edu hg19 2 233633278 233633278 + Missense_Mutation SNP A A T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . KCNJ13 NM_002242 exon3 c.T706A p.F236I TGAAGAATGGACA . 194.0 60.0 180.0 0.0 . 18 . . Atlas-SNP GIGYF2 26058 hgsc.bcm.edu hg19 2 233674449 233674449 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . GIGYF2 NM_001103147 exon18 c.G1889T p.R630L AGGAACGACTGAC . 297.0 127.0 257.0 0.0 . 288 . . Atlas-SNP USP40 55230 hgsc.bcm.edu hg19 2 234399852 234399852 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . USP40 NM_018218 exon25 c.G3006T p.E1002D TGAGATCTCTATG . 400.0 158.0 379.0 1.0 . 174 . . Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4853115 4853115 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ITPR1 NM_001168272 exon55 c.A7394G p.D2465G AAGTAGATAGGCT . 68.0 36.0 66.0 0.0 . 659 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266113 41266113 + Missense_Mutation SNP C C G rs121913403 bycluster TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b CTNNB1,gallbladder,other,0,1 CTNNB1 NM_001098209 exon3 c.C110G p.S37C TCCATTCTGGTGC . 142.0 44.0 140.0 0.0 . 4904 . . Atlas-SNP CCR5 1234 hgsc.bcm.edu hg19 3 46414720 46414720 + Silent SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CCR5 NM_000579 exon3 c.T327C p.F109F CTATTTTATAGGC . 127.0 51.0 113.0 0.0 . 128 . . Atlas-SNP CADPS 8618 hgsc.bcm.edu hg19 3 62459851 62459851 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CADPS NM_003716 exon24 c.A3474T p.Q1158H TACCTCTTGGCCC . 60.0 17.0 44.0 0.0 . 387 . . Atlas-SNP CADPS 8618 hgsc.bcm.edu hg19 3 62459893 62459893 + Silent SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CADPS NM_003716 exon24 c.C3432T p.A1144A AGCTTTGGCATCA . 97.0 5.0 66.0 0.0 . 387 . . Atlas-SNP C3orf17 25871 hgsc.bcm.edu hg19 3 112729968 112729968 + Silent SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . C3orf17 NM_015412 exon6 c.A837G p.K279K TTTAGCTTTTTTT . 139.0 39.0 108.0 0.0 . 37 . . Atlas-SNP TRPC1 7220 hgsc.bcm.edu hg19 3 142522995 142522995 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TRPC1 NM_001251845 exon11 c.T1934A p.L645H CAATGCTTCATAA . 152.0 55.0 121.0 0.0 . 82 . . Atlas-SNP IL12A 3592 hgsc.bcm.edu hg19 3 159713248 159713248 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . IL12A NM_000882 exon7 c.T664A p.F222I CCGGATTTTTATA . 130.0 13.0 124.0 0.0 . 23 . . Atlas-SNP FGF12 2257 hgsc.bcm.edu hg19 3 192078328 192078328 + Splice_Site SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . FGF12 NM_004113 exon4 c.14-1G>A . GGGGTTCTGCAAA . 124.0 49.0 120.0 0.0 . 88 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3129224 3129224 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . HTT NM_002111 exon12 c.A1636G p.M546V CCTGCCATGGACC . 174.0 80.0 221.0 1.0 . 221 . . Atlas-SNP PCDH7 5099 hgsc.bcm.edu hg19 4 30921844 30921844 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . PCDH7 NM_032457 exon2 c.T3244A p.C1082S CAGAGTTGCTATG . 123.0 49.0 141.0 0.0 . 215 . . Atlas-SNP GABRB1 2560 hgsc.bcm.edu hg19 4 47163447 47163447 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . GABRB1 NM_000812 exon4 c.T422A p.I141N GAATGATTCGACT . 72.0 5.0 72.0 0.0 . 107 . . Atlas-SNP FRYL 285527 hgsc.bcm.edu hg19 4 48512966 48512966 + Silent SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . FRYL NM_015030 exon58 c.G8181A p.E2727E GACTGCCTCATTA . 295.0 103.0 295.0 0.0 . 242 . . Atlas-SNP AMBN 258 hgsc.bcm.edu hg19 4 71467187 71467187 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . AMBN NM_016519 exon6 c.T347C p.L116S CATCCTTGAAGCC . 111.0 38.0 106.0 0.0 . 73 . . Atlas-SNP LIN54 132660 hgsc.bcm.edu hg19 4 83891563 83891563 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . LIN54 NM_194282 exon4 c.A868G p.S290G CACCACTTTCAGA . 128.0 53.0 106.0 0.0 . 50 . . Atlas-SNP PITX2 5308 hgsc.bcm.edu hg19 4 111539720 111539720 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . PITX2 NM_000325 exon3 c.C536A p.P179Q TAGCCTGGGTACA . 113.0 41.0 120.0 0.0 . 73 . . Atlas-SNP CCRN4L 25819 hgsc.bcm.edu hg19 4 139965969 139965969 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CCRN4L NM_012118 exon3 c.C637A p.Q213K GGCTATCAAGGCA . 166.0 64.0 160.0 0.0 . 22 . . Atlas-SNP GALNTL6 442117 hgsc.bcm.edu hg19 4 173730589 173730589 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . GALNTL6 NM_001034845 exon6 c.G631A p.G211R AGAGAAGGACTCA . 142.0 9.0 140.0 0.0 . 102 . . Atlas-SNP SORBS2 8470 hgsc.bcm.edu hg19 4 186544895 186544895 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SORBS2 NM_001270771 exon16 c.A1976G p.N659S CTTTGATTTTCTT . 189.0 76.0 166.0 0.0 . 300 . . Atlas-SNP PRDM9 56979 hgsc.bcm.edu hg19 5 23527459 23527459 + Silent SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . PRDM9 NM_020227 exon11 c.G2262A p.G754G GTGTGGGCGGGGC . 185.0 19.0 273.0 0.0 . 344 . . Atlas-SNP NUP155 9631 hgsc.bcm.edu hg19 5 37302983 37302983 + Silent SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . NUP155 NM_153485 exon29 c.A3345G p.L1115L GTACTCTAGTCGC . 59.0 26.0 53.0 0.0 . 116 . . Atlas-SNP SLC30A5 64924 hgsc.bcm.edu hg19 5 68411780 68411780 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SLC30A5 NM_022902 exon9 c.A811G p.I271V TCTCTCATTATGC . 109.0 34.0 120.0 0.0 . 54 . . Atlas-SNP NUDT12 83594 hgsc.bcm.edu hg19 5 102887925 102887925 + Missense_Mutation SNP C C G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . NUDT12 NM_031438 exon6 c.G1271C p.R424T TGTTCTCTAGTGA . 124.0 25.0 94.0 0.0 . 27 . . Atlas-SNP KCNN2 3781 hgsc.bcm.edu hg19 5 113698857 113698857 + Nonsense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . KCNN2 NM_021614 exon1 c.G385T p.E129X CTGTTCGAAAAGC . 115.0 29.0 76.0 0.0 . 144 . . Atlas-SNP FTMT 94033 hgsc.bcm.edu hg19 5 121187759 121187759 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . FTMT NM_177478 exon1 c.C101A p.P34Q GGGCCCCGGGGCG . 56.0 19.0 22.0 0.0 . 71 . . Atlas-SNP TCF7 6932 hgsc.bcm.edu hg19 5 133481891 133481891 + Splice_Site SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TCF7 NM_201634 exon10 c.804-1G>A . TTTACAGATAACT . 143.0 34.0 93.0 0.0 . 81 . . Atlas-SNP RBM27 54439 hgsc.bcm.edu hg19 5 145640456 145640456 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . RBM27 NM_018989 exon12 c.A1888G p.I630V GTTAATATCCAGG . 432.0 23.0 292.0 0.0 . 119 . . Atlas-SNP GRM6 2916 hgsc.bcm.edu hg19 5 178418902 178418902 + Silent SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . GRM6 NM_000843 exon2 c.G687A p.G229G CTCAACCCCACTT . 135.0 18.0 120.0 0.0 . 149 . . Atlas-SNP C5orf60 285679 hgsc.bcm.edu hg19 5 179069928 179069928 + Missense_Mutation SNP G G C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . C5orf60 NM_001142306 exon4 c.C625G p.H209D GCTGGTGTGAAGG . 253.0 56.0 209.0 0.0 . 24 . . Atlas-SNP PRPF4B 8899 hgsc.bcm.edu hg19 6 4032939 4032939 + Silent SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . PRPF4B NM_003913 exon2 c.C1188T p.S396S CCGATCCTTAGAA . 236.0 30.0 153.0 0.0 . 140 . . Atlas-SNP GFOD1 54438 hgsc.bcm.edu hg19 6 13365293 13365293 + Silent SNP C C G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . GFOD1 NM_018988 exon2 c.G855C p.V285V GTTGCTCACCGGC . 89.0 32.0 58.0 0.0 . 38 . . Atlas-SNP FAM8A1 51439 hgsc.bcm.edu hg19 6 17601130 17601130 + Missense_Mutation SNP C C G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . FAM8A1 NM_016255 exon1 c.C490G p.P164A GCGGCGCCGCCGC . 123.0 9.0 83.0 0.0 . 26 . . Atlas-SNP GOPC 57120 hgsc.bcm.edu hg19 6 117890868 117890868 + Missense_Mutation SNP A A C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b GOPC,NS,carcinoma,0,1 GOPC NM_020399 exon7 c.T944G p.I315S TCAGAGATGAGGA . 154.0 12.0 141.0 0.0 . 29 . . Atlas-SNP EPB41L2 2037 hgsc.bcm.edu hg19 6 131216151 131216151 + Missense_Mutation SNP A A C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . EPB41L2 NM_001135554 exon9 c.T1345G p.S449A TATAGGAAATTTT . 106.0 21.0 116.0 0.0 . 96 . . Atlas-SNP KDELR2 11014 hgsc.bcm.edu hg19 7 6505873 6505873 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . KDELR2 NM_006854 exon4 c.G433T p.E145X TGGTCTCGGCCTC . 76.0 22.0 88.0 0.0 . 31 . . Atlas-SNP TWIST1 7291 hgsc.bcm.edu hg19 7 19156374 19156374 + Missense_Mutation SNP T T C rs200369729 alternate_allele TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TWIST1 NM_000474 exon1 c.A571G p.R191G CCATCCTCCAGAC . 200.0 79.0 204.0 0.0 . 18 . T|0.998;G|0.002 Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48314641 48314641 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ABCA13 NM_152701 exon17 c.T5378C p.I1793T TCGCAATTGTGAT . 121.0 45.0 121.0 0.0 . 1192 . . Atlas-SNP POM121 9883 hgsc.bcm.edu hg19 7 72413572 72413572 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . POM121 NM_172020 exon11 c.A2245G p.M749V CCGTCCATGATCA . 333.0 55.0 217.0 0.0 . 131 . . Atlas-SNP HSPB1 3315 hgsc.bcm.edu hg19 7 75932030 75932030 + Missense_Mutation SNP A A G rs200190722 bycluster;alternate_allele TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . HSPB1 NM_001540 exon1 c.A1G p.M1V GCCAGCATGACCG . 147.0 39.0 101.0 0.0 . 6 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82538312 82538312 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . PCLO NM_014510 exon8 c.G13318T p.E4440X TTTCCTCACGACG . 94.0 29.0 75.0 0.0 . 1506 . . Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94057146 94057146 + Missense_Mutation SNP C C G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . COL1A2 NM_000089 exon49 c.C3475G p.P1159A AAGAACCCAGCTC . 83.0 20.0 58.0 0.0 . 240 . . Atlas-SNP GRM8 2918 hgsc.bcm.edu hg19 7 126173564 126173564 + Silent SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . GRM8 NM_000845 exon8 c.G1872T p.V624V TAGGAGCACGTAA . 184.0 59.0 143.0 0.0 . 377 . . Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141735987 141735987 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . MGAM NM_004668 exon17 c.G1978T p.G660C ATATGTGGCTTTG . 161.0 36.0 121.0 0.0 . 767 . . Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141735988 141735988 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . MGAM NM_004668 exon17 c.G1979T p.G660V TATGTGGCTTTGC . 165.0 38.0 121.0 0.0 . 767 . . Atlas-SNP RP1 6101 hgsc.bcm.edu hg19 8 55539282 55539282 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . RP1 NM_006269 exon4 c.G2840T p.C947F TAAATTGTAGCAA . 195.0 11.0 233.0 0.0 . 429 . . Atlas-SNP OXR1 55074 hgsc.bcm.edu hg19 8 107705036 107705036 + Silent SNP T T G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . OXR1 NM_001198532 exon6 c.T609G p.T203T TTCAACTTCTGAG . 105.0 42.0 91.0 0.0 . 190 . . Atlas-SNP EIF3E 3646 hgsc.bcm.edu hg19 8 109226846 109226846 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . EIF3E NM_001568 exon10 c.A1051G p.I351V TGCTGATACACTG . 244.0 13.0 250.0 0.0 . 73 . . Atlas-SNP COL14A1 7373 hgsc.bcm.edu hg19 8 121296007 121296007 + Silent SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . COL14A1 NM_021110 exon32 c.T3957A p.V1319V TGGGGTTATTTTA . 101.0 45.0 91.0 0.0 . 292 . . Atlas-SNP MTBP 27085 hgsc.bcm.edu hg19 8 121468896 121468896 + Missense_Mutation SNP A A T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . MTBP NM_022045 exon7 c.A733T p.I245L ATACAGATATGGG . 56.0 17.0 54.0 0.0 . 77 . . Atlas-SNP ANXA13 312 hgsc.bcm.edu hg19 8 124696885 124696885 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ANXA13 NM_001003954 exon11 c.G919T p.E307X ACGTCTCCTCATC . 124.0 41.0 116.0 0.0 . 38 . . Atlas-SNP ANXA13 312 hgsc.bcm.edu hg19 8 124696886 124696886 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ANXA13 NM_001003954 exon11 c.G918T p.E306D CGTCTCCTCATCG . 126.0 41.0 116.0 0.0 . 38 . . Atlas-SNP LYNX1 66004 hgsc.bcm.edu hg19 8 143857324 143857324 + Missense_Mutation SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . LYNX1 NM_177477 exon2 c.G52A p.A18T TCTTACCCAGAGG . 67.0 22.0 45.0 0.0 . 40 . . Atlas-SNP ACO1 48 hgsc.bcm.edu hg19 9 32424547 32424547 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ACO1 NM_002197 exon10 c.G1072A p.V358I CAACAGGTTGTGG . 95.0 6.0 115.0 0.0 . 149 . . Atlas-SNP GNAQ 2776 hgsc.bcm.edu hg19 9 80537112 80537112 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b GNAQ,NS,carcinoma,0,2 GNAQ NM_002072 exon2 c.A286T p.T96S TGAGTGTGTCCAT . 53.0 4.0 46.0 1.0 . 384 . . Atlas-SNP MUSK 4593 hgsc.bcm.edu hg19 9 113550073 113550073 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . MUSK NM_005592 exon13 c.G1882A p.A628T GAGGCAGCCCTCA . 80.0 26.0 90.0 0.0 . 112 . . Atlas-SNP RGS3 5998 hgsc.bcm.edu hg19 9 116247941 116247941 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . RGS3 NM_144488 exon8 c.G657T p.L219F TCTCTTGGTTACT . 81.0 30.0 89.0 0.0 . 251 . . Atlas-SNP CDK5RAP2 55755 hgsc.bcm.edu hg19 9 123298694 123298694 + Silent SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CDK5RAP2 NM_018249 exon7 c.C618T p.H206H CCCCTCGTGCATC . 60.0 24.0 58.0 0.0 . 157 . . Atlas-SNP SLC29A3 55315 hgsc.bcm.edu hg19 10 73111483 73111483 + Missense_Mutation SNP G G C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SLC29A3 NM_018344 exon4 c.G548C p.S183T TCTTCAGCAGCAG . 59.0 18.0 67.0 0.0 . 51 . . Atlas-SNP DNAJB12 54788 hgsc.bcm.edu hg19 10 74114738 74114738 + Missense_Mutation SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . DNAJB12 NM_017626 exon1 c.G20A p.R7Q GGCAGCCGGGCGC . 55.0 33.0 44.0 0.0 . 22 . . Atlas-SNP PPP3CB 5532 hgsc.bcm.edu hg19 10 75238300 75238300 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . PPP3CB NM_001142354 exon3 c.T368C p.L123P AGAAAAAGGTATC . 82.0 4.0 60.0 0.0 . 68 . . Atlas-SNP CH25H 9023 hgsc.bcm.edu hg19 10 90966684 90966684 + Silent SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CH25H NM_003956 exon1 c.C366A p.L122L CAGCAGGAGCAGC . 123.0 36.0 109.0 0.0 . 19 . . Atlas-SNP DNMBP 23268 hgsc.bcm.edu hg19 10 101715378 101715378 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . DNMBP NM_015221 exon4 c.C1853T p.P618L GATACCGGAGTAC . 73.0 5.0 65.0 0.0 . 173 . . Atlas-SNP SFXN2 118980 hgsc.bcm.edu hg19 10 104489078 104489078 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SFXN2 NM_178858 exon5 c.A434G p.Q145R CCAGGCAGATGGC . 74.0 31.0 45.0 0.0 . 40 . . Atlas-SNP ATRNL1 26033 hgsc.bcm.edu hg19 10 117061424 117061424 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ATRNL1 NM_207303 exon17 c.T2689C p.S897P TCATGTTCCAACT . 95.0 40.0 85.0 0.0 . 219 . . Atlas-SNP OR52R1 119695 hgsc.bcm.edu hg19 11 4824778 4824778 + Missense_Mutation SNP A A T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . OR52R1 NM_001005177 exon1 c.T833A p.L278Q GCAAACAGGATGT . 145.0 51.0 165.0 0.0 . 81 . . Atlas-SNP OR52N4 390072 hgsc.bcm.edu hg19 11 5776539 5776539 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . OR52N4 NM_001005175 exon1 c.C569A p.S190Y AATTGTCCTGTGG . 74.0 5.0 69.0 0.0 . 55 . . Atlas-SNP OR52N4 390072 hgsc.bcm.edu hg19 11 5776540 5776540 + Silent SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . OR52N4 NM_001005175 exon1 c.C570T p.S190S ATTGTCCTGTGGT . 73.0 5.0 69.0 0.0 . 55 . . Atlas-SNP PAMR1 25891 hgsc.bcm.edu hg19 11 35454063 35454063 + Silent SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b PAMR1,NS,carcinoma,0,1 PAMR1 NM_015430 exon12 c.C2055A p.I685I AGCCGCGATGCCT . 70.0 3.0 70.0 0.0 . 85 . . Atlas-SNP CKAP5 9793 hgsc.bcm.edu hg19 11 46771955 46771955 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CKAP5 NM_001008938 exon42 c.A5573G p.K1858R TATTTCTTCTTAT . 92.0 6.0 106.0 0.0 . 134 . . Atlas-SNP OR6Q1 219952 hgsc.bcm.edu hg19 11 57798664 57798664 + Silent SNP G G C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . OR6Q1 NM_001005186 exon1 c.G240C p.V80V TACAGTGCCCAAG . 181.0 18.0 172.0 0.0 . 58 . . Atlas-SNP OR9I1 219954 hgsc.bcm.edu hg19 11 57886498 57886498 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . OR9I1 NM_001005211 exon1 c.T419C p.L140P CAGCAGAGCCTGG . 71.0 7.0 80.0 0.0 . 53 . . Atlas-SNP ZFP91 80829 hgsc.bcm.edu hg19 11 58381796 58381796 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ZFP91 NM_053023 exon9 c.G1082T p.R361L TTCTGCGACATGC . 57.0 21.0 51.0 0.0 . 66 . . Atlas-SNP STIP1 10963 hgsc.bcm.edu hg19 11 63963275 63963275 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . STIP1 NM_006819 exon5 c.A662G p.N221S CAGAGAATAAGAA . 260.0 109.0 239.0 0.0 . 63 . . Atlas-SNP CBL 867 hgsc.bcm.edu hg19 11 119170325 119170325 + Missense_Mutation SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CBL NM_005188 exon16 c.C2555T p.T852I CTGCCACCGCCTC . 88.0 5.0 92.0 0.0 . 408 . . Atlas-SNP ATF7IP 55729 hgsc.bcm.edu hg19 12 14577886 14577886 + Missense_Mutation SNP A A C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ATF7IP NM_018179 exon2 c.A1037C p.D346A ATATTGATGCTAA . 90.0 34.0 122.0 0.0 . 136 . . Atlas-SNP SLCO1C1 53919 hgsc.bcm.edu hg19 12 20852565 20852565 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SLCO1C1 NM_017435 exon2 c.C55A p.P19T GTGCAACCTGTTG . 254.0 94.0 286.0 0.0 . 216 . . Atlas-SNP SLC38A2 54407 hgsc.bcm.edu hg19 12 46758276 46758276 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SLC38A2 NM_018976 exon10 c.A769G p.I257V TGTTTATTGTTTC . 126.0 33.0 157.0 0.0 . 36 . . Atlas-SNP TFCP2 7024 hgsc.bcm.edu hg19 12 51510198 51510198 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TFCP2 NM_001173452 exon4 c.A357G p.I119M ACGGAATATACTC . 74.0 37.0 96.0 0.0 . 49 . . Atlas-SNP SLC26A10 65012 hgsc.bcm.edu hg19 12 58018905 58018905 + Splice_Site SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SLC26A10 NM_133489 exon11 c.1345-1G>A . CTTATAGGAGACT . 169.0 66.0 138.0 0.0 . 89 . . Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78522622 78522622 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . NAV3 NM_014903 exon18 c.G4417A p.G1473R GCAGCTGGAAAAT . 87.0 35.0 93.0 0.0 . 506 . . Atlas-SNP METTL25 84190 hgsc.bcm.edu hg19 12 82792710 82792710 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . . NM_032230 exon4 c.A668G p.H223R AGAAACATTGGAA . 97.0 44.0 102.0 0.0 . . . . Atlas-SNP NAA25 80018 hgsc.bcm.edu hg19 12 112516482 112516482 + Missense_Mutation SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . NAA25 NM_024953 exon6 c.G541A p.V181I TTTCGACCATTCT . 128.0 28.0 129.0 0.0 . 105 . . Atlas-SNP GCN1L1 10985 hgsc.bcm.edu hg19 12 120595713 120595713 + Silent SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . GCN1L1 NM_006836 exon26 c.C3027A p.I1009I AGTGAGGATCTGA . 113.0 39.0 98.0 0.0 . 207 . . Atlas-SNP AKAP11 11215 hgsc.bcm.edu hg19 13 42874405 42874405 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . AKAP11 NM_016248 exon8 c.A1523G p.H508R CCCACCATACTAA . 219.0 13.0 220.0 0.0 . 146 . . Atlas-SNP TRIM13 10206 hgsc.bcm.edu hg19 13 50586458 50586458 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TRIM13 NM_001007278 exon4 c.T391C p.F131L CATGTCTTCTGTT . 174.0 10.0 126.0 0.0 . 30 . . Atlas-SNP OR4N5 390437 hgsc.bcm.edu hg19 14 20612471 20612471 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . OR4N5 NM_001004724 exon1 c.T577C p.F193L AATACCTTTGTGG . 72.0 20.0 67.0 0.0 . 72 . . Atlas-SNP OR11H4 390442 hgsc.bcm.edu hg19 14 20711205 20711205 + Silent SNP C C G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b OR11H4,rectum,carcinoma,0,3 OR11H4 NM_001004479 exon1 c.C255G p.S85S TGTGTCCTCCACT . 145.0 12.0 137.0 0.0 . 63 . . Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45658480 45658480 + Missense_Mutation SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . FANCM NM_020937 exon20 c.A5255G p.N1752S CTCAGAATCATAA . 300.0 107.0 350.0 0.0 . 225 . . Atlas-SNP SIX6 4990 hgsc.bcm.edu hg19 14 60976599 60976599 + Silent SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b SIX6,NS,carcinoma,0,1 SIX6 NM_007374 exon1 c.C483A p.L161L TGAGCTCGCCCAG . 270.0 96.0 235.0 0.0 . 27 . . Atlas-SNP MLH3 27030 hgsc.bcm.edu hg19 14 75500136 75500136 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . MLH3 NM_001040108 exon7 c.A3701T p.E1234V AGCTGCTCCAGAC . 60.0 14.0 59.0 0.0 . 200 . . Atlas-SNP SLIRP 81892 hgsc.bcm.edu hg19 14 78174474 78174474 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b SLIRP,NS,carcinoma,0,1 SLIRP NM_001267864 exon1 c.G20A p.R7K CAGCGAGAGGTGC . 93.0 43.0 89.0 0.0 . 6 . . Atlas-SNP CEP170B 283638 hgsc.bcm.edu hg19 14 105350819 105350819 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . . NM_001112726 exon9 c.G1703A p.G568E ACGCAGGGACATA . 174.0 78.0 179.0 0.0 . . . . Atlas-SNP GPR176 11245 hgsc.bcm.edu hg19 15 40093462 40093462 + Silent SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . GPR176 NM_007223 exon3 c.G1419A p.K473K CAGCCGCTTCTTG . 116.0 8.0 82.0 0.0 . 41 . . Atlas-SNP CHST14 113189 hgsc.bcm.edu hg19 15 40763663 40763663 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CHST14 NM_130468 exon1 c.G251A p.R84H CCTGGCGCGGGAA . 773.0 258.0 563.0 0.0 . 19 . . Atlas-SNP CHST14 113189 hgsc.bcm.edu hg19 15 40763664 40763664 + Silent SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CHST14 NM_130468 exon1 c.C252A p.R84R CTGGCGCGGGAAA . 760.0 254.0 561.0 0.0 . 19 . . Atlas-SNP SEMA6D 80031 hgsc.bcm.edu hg19 15 48063146 48063146 + Missense_Mutation SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SEMA6D NM_153618 exon19 c.C2386T p.H796Y AAGGCCCATGGCC . 175.0 11.0 142.0 0.0 . 322 . . Atlas-SNP C16orf11 146325 hgsc.bcm.edu hg19 16 613776 613776 + Nonsense_Mutation SNP C C A rs368085414 alternate_allele TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . C16orf11 NM_145270 exon2 c.C482A p.S161X CTGAGTCGTGGAA . 64.0 5.0 67.0 0.0 . 27 . . Atlas-SNP CLEC16A 23274 hgsc.bcm.edu hg19 16 11217616 11217616 + Silent SNP C C T rs200993240 TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CLEC16A NM_015226 exon20 c.C2286T p.G762G GACTGGCGTGGAG . 70.0 12.0 49.0 0.0 . 101 . . Atlas-SNP TBX6 6911 hgsc.bcm.edu hg19 16 30097548 30097548 + Missense_Mutation SNP A A C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TBX6 NM_004608 exon9 c.T1309G p.X437G TGGTTCAGTACAT . 169.0 37.0 139.0 0.0 . 29 . . Atlas-SNP P2RX1 5023 hgsc.bcm.edu hg19 17 3806860 3806860 + Missense_Mutation SNP C C A rs367615874 alternate_allele TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . P2RX1 NM_002558 exon6 c.G590T p.R197L TTGAAGCGTGGAA . 24.0 15.0 29.0 0.0 . 38 . . Atlas-SNP SMCR8 140775 hgsc.bcm.edu hg19 17 18220404 18220404 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SMCR8 NM_144775 exon1 c.G1301A p.G434E AACTGGGAGATGA . 85.0 12.0 131.0 0.0 . 62 . . Atlas-SNP SUZ12 23512 hgsc.bcm.edu hg19 17 30320261 30320261 + Missense_Mutation SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SUZ12 NM_015355 exon11 c.C1202T p.A401V TTTCAGCTGTTAA . 457.0 27.0 633.0 0.0 . 61 . . Atlas-SNP LUC7L3 51747 hgsc.bcm.edu hg19 17 48817694 48817694 + Missense_Mutation SNP A A T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . LUC7L3 NM_006107 exon3 c.A194T p.N65I ATGAAAATCTACG . 119.0 65.0 94.0 0.0 . 32 . . Atlas-SNP VEZF1 7716 hgsc.bcm.edu hg19 17 56060489 56060489 + Missense_Mutation SNP T T G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . VEZF1 NM_007146 exon2 c.A299C p.K100T ACCAACTTGATCC . 97.0 27.0 80.0 0.0 . 50 . . Atlas-SNP RPTOR 57521 hgsc.bcm.edu hg19 17 78704430 78704430 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b RPTOR,caecum,carcinoma,0,1 RPTOR NM_001163034 exon5 c.T578C p.V193A TCTTCGTCTACGA . 83.0 27.0 66.0 0.0 . 122 . . Atlas-SNP FSCN2 25794 hgsc.bcm.edu hg19 17 79495626 79495626 + Silent SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . FSCN2 NM_001077182 exon1 c.C69T p.Y23Y CCGCTACCTGACA . 211.0 59.0 143.0 0.0 . 35 . . Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80038048 80038048 + Missense_Mutation SNP C C G rs147197890 alternate_allele TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . FASN NM_004104 exon41 c.G7114C p.V2372L GCTGCACGAAGAA . 103.0 49.0 79.0 0.0 . 154 . C|1.000;T|0.000 Atlas-SNP DSC1 1823 hgsc.bcm.edu hg19 18 28719849 28719849 + Nonsense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . DSC1 NM_004948 exon11 c.C1525T p.Q509X ACTTCTGATACCT . 110.0 44.0 119.0 0.0 . 240 . . Atlas-SNP DSG3 1830 hgsc.bcm.edu hg19 18 29052251 29052251 + Silent SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . DSG3 NM_001944 exon13 c.C1902T p.A634A AGTGGCCCCCCTT . 96.0 27.0 104.0 0.0 . 172 . . Atlas-SNP NFATC1 4772 hgsc.bcm.edu hg19 18 77208981 77208981 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . NFATC1 NM_006162 exon4 c.C1586A p.A529D TGCGAGCCGTGTA . 86.0 42.0 95.0 0.0 . 105 . . Atlas-SNP RANBP3 8498 hgsc.bcm.edu hg19 19 5925741 5925741 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . RANBP3 NM_007322 exon10 c.A821T p.N274I CTCTCATTTATCA . 25.0 8.0 33.0 0.0 . 36 . . Atlas-SNP TRIP10 9322 hgsc.bcm.edu hg19 19 6743800 6743800 + Nonsense_Mutation SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b TRIP10_ENST00000313244,NS,carcinoma,0,2 TRIP10 NM_004240 exon7 c.C595T p.R199X TTCAACCGAGACC . 118.0 35.0 130.0 1.0 . 104 . . Atlas-SNP COL5A3 50509 hgsc.bcm.edu hg19 19 10092740 10092740 + Splice_Site SNP C C T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . COL5A3 NM_015719 exon33 c.2460+1G>A . GACTCACCGACTT . 119.0 47.0 101.0 0.0 . 243 . . Atlas-SNP CYP4F3 4051 hgsc.bcm.edu hg19 19 15758109 15758109 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CYP4F3 NM_001199209 exon5 c.T500C p.F167S AGATTTTCAATGA . 118.0 8.0 111.0 0.0 . 69 . . Atlas-SNP ATP13A1 57130 hgsc.bcm.edu hg19 19 19756765 19756765 + Missense_Mutation SNP T T G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ATP13A1 NM_020410 exon24 c.A3278C p.E1093A TCAAACTCCTTGT . 28.0 7.0 28.0 0.0 . 82 . . Atlas-SNP TSHZ3 57616 hgsc.bcm.edu hg19 19 31769256 31769256 + Silent SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TSHZ3 NM_020856 exon2 c.T1443C p.T481T CTCGTCAGTGACC . 70.0 23.0 61.0 0.0 . 549 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36216399 36216399 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . MLL4 NM_014727 exon12 c.G3662T p.C1221F AAGTCTGCTGTGA . 25.0 11.0 32.0 0.0 . 229 . . Atlas-SNP ZC3H4 23211 hgsc.bcm.edu hg19 19 47587632 47587632 + Nonsense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ZC3H4 NM_015168 exon9 c.C1188A p.C396X GTACTTGCAAATG . 94.0 4.0 62.0 0.0 . 96 . . Atlas-SNP SIGLEC6 946 hgsc.bcm.edu hg19 19 52031019 52031019 + Silent SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SIGLEC6 NM_001245 exon7 c.C1170A p.V390V GACCATGACGGGG . 64.0 8.0 72.0 0.0 . 142 . . Atlas-SNP PRKCG 5582 hgsc.bcm.edu hg19 19 54395040 54395040 + Silent SNP G G T rs77550964 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . PRKCG NM_002739 exon6 c.G642T p.T214T CCGAACGGTGAAA . 179.0 70.0 131.0 0.0 . 246 . G|0.999;A|0.001 Atlas-SNP ZSCAN22 342945 hgsc.bcm.edu hg19 19 58850111 58850111 + Missense_Mutation SNP A A T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ZSCAN22 NM_181846 exon3 c.A895T p.S299C GCCTGCAGCGAGT . 94.0 37.0 94.0 0.0 . 47 . . Atlas-SNP CST9L 128821 hgsc.bcm.edu hg19 20 23549024 23549024 + Missense_Mutation SNP G G T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CST9L NM_080610 exon1 c.C64A p.Q22K GGATCTGGGAGCC . 101.0 40.0 83.0 0.0 . 25 . . Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57829044 57829044 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ZNF831 NM_178457 exon5 c.T4280C p.L1427P CCTGCCTGGCAGT . 78.0 24.0 111.0 0.0 . 287 . . Atlas-SNP TMPRSS15 5651 hgsc.bcm.edu hg19 21 19726182 19726182 + Splice_Site SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TMPRSS15 NM_002772 exon10 c.881-2A>T . AGAAGCTACAAAA . 304.0 22.0 311.0 0.0 . 189 . . Atlas-SNP TMPRSS3 64699 hgsc.bcm.edu hg19 21 43802299 43802299 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . TMPRSS3 NM_001256317 exon9 c.C827T p.S276F AACAGGGAAACTA . 90.0 27.0 95.0 0.0 . 40 . . Atlas-SNP C22orf42 150297 hgsc.bcm.edu hg19 22 32546378 32546378 + Silent SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . C22orf42 NM_001010859 exon7 c.T582C p.L194L GTCTTCAAGAGAG . 450.0 172.0 437.0 1.0 . 37 . . Atlas-SNP L3MBTL2 83746 hgsc.bcm.edu hg19 22 41616753 41616753 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . L3MBTL2 NM_031488 exon7 c.T734A p.L245H TGCTGCTTCGGTA . 59.0 26.0 54.0 0.0 . 61 . . Atlas-SNP SULT4A1 25830 hgsc.bcm.edu hg19 22 44237809 44237809 + Missense_Mutation SNP G G A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SULT4A1 NM_014351 exon2 c.C173T p.T58I AAGCTGGTGCCTG . 47.0 17.0 35.0 0.0 . 26 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32827649 32827649 + Nonsense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . DMD NM_004006 exon7 c.A610T p.R204X GATATCTGGCGAT . 63.0 38.0 56.0 0.0 . 2127 . . Atlas-SNP AMER1 139285 hgsc.bcm.edu hg19 X 63412647 63412647 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . . NM_152424 exon2 c.A520G p.S174G TACTGCTAAAAAA . 44.0 32.0 48.0 0.0 . . . . Atlas-SNP ATP7A 538 hgsc.bcm.edu hg19 X 77258571 77258571 + Silent SNP A A T novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ATP7A NM_000052 exon6 c.A1545T p.G515G CTTAGGAATATAT . 82.0 70.0 82.0 0.0 . 248 . . Atlas-SNP IGSF1 3547 hgsc.bcm.edu hg19 X 130420012 130420012 + Silent SNP A A G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . IGSF1 NM_001555 exon4 c.T108C p.P36P TGGTTGAGGGTCC . 49.0 30.0 65.0 0.0 . 231 . . Atlas-SNP SLITRK4 139065 hgsc.bcm.edu hg19 X 142716502 142716502 + Missense_Mutation SNP T T A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SLITRK4 NM_001184750 exon2 c.A2423T p.K808M TCACTCTTCCTTT . 72.0 8.0 67.0 0.0 . 162 . . Atlas-SNP SLITRK4 139065 hgsc.bcm.edu hg19 X 142716504 142716504 + Missense_Mutation SNP C C G novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . SLITRK4 NM_001184750 exon2 c.G2421C p.R807S ACTCTTCCTTTGT . 71.0 8.0 64.0 0.0 . 162 . . Atlas-SNP MAGEA1 4100 hgsc.bcm.edu hg19 X 152482572 152482572 + Missense_Mutation SNP C C A novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . MAGEA1 NM_004988 exon3 c.G439T p.A147S CAGAGGCTTTGCC . 131.0 8.0 116.0 0.0 . 57 . . Atlas-SNP ND3 0 hgsc.bcm.edu hg19 MT 10251 10251 + Missense_Mutation SNP T T C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . . ENST00000361227 exon1 c.T193C p.F65L TTATTATTTGATC . 38.0 17.0 19.0 0.0 . . . . Atlas-SNP MIER1 57708 hgsc.bcm.edu hg19 1 67450363 67450364 + In_Frame_Ins INS - - GAT novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . MIER1 NM_001077700 exon14 c.1478_1479insGAT p.D493delinsEI . . 184.0 64.0 193.0 0.0 . 86 . . Atlas-INDEL EFCAB7 84455 hgsc.bcm.edu hg19 1 64021164 64021165 + Frame_Shift_Ins INS - - TA novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . EFCAB7 NM_032437 exon9 c.1192_1193insTA p.L398fs . . 231.0 93.0 213.0 0.0 . 45 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74282058 74282071 + Frame_Shift_Del DEL AATTCCAGAATGCG AATTCCAGAATGCG - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 AATTCCAGAATGCG AATTCCAGAATGCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . ALB NM_000477 exon10 c.1276_1289del p.426_430del . . 178.0 56.0 231.0 0.0 . 132 . . Atlas-INDEL C19orf80 55908 hgsc.bcm.edu hg19 19 11350417 11350428 + In_Frame_Del DEL TGACCCTGCTCT TGACCCTGCTCT - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 TGACCCTGCTCT TGACCCTGCTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . C19orf80 NM_018687 exon1 c.103_114del p.35_38del . . 115.0 32.0 103.0 0.0 . 8 . . Atlas-INDEL DAPK1 1612 hgsc.bcm.edu hg19 9 90219888 90219888 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . DAPK1 NM_004938 exon3 c.81delG p.V27fs . . 89.0 36.0 120.0 0.0 . 329 . . Atlas-INDEL IFIT5 24138 hgsc.bcm.edu hg19 10 91177145 91177145 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . IFIT5 NM_012420 exon2 c.188delT p.L63fs . . 160.0 51.0 167.0 0.0 . 32 . . Atlas-INDEL LAG3 3902 hgsc.bcm.edu hg19 12 6887494 6887511 + In_Frame_Del DEL CCGGAGCCGGAGCCGGAG CCGGAGCCGGAGCCGGAG - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 CCGGAGCCGGAGCCGGAG CCGGAGCCGGAGCCGGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . LAG3 NM_002286 exon8 c.1515_1532del p.505_511del . . 56.0 22.0 67.0 0.0 . 35 . . Atlas-INDEL CDC5L 988 hgsc.bcm.edu hg19 6 44414400 44414400 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b CDC5L,NS,carcinoma,0,1 CDC5L NM_001253 exon16 c.2360delG p.R787fs . . 108.0 27.0 62.0 0.0 . 86 . . Atlas-INDEL CCT8L2 150160 hgsc.bcm.edu hg19 22 17073436 17073439 + Frame_Shift_Del DEL TCCA TCCA - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 TCCA TCCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CCT8L2 NM_014406 exon1 c.3_6del p.1_2del . . 65.0 27.0 74.0 0.0 . 150 . . Atlas-INDEL DSPP 1834 hgsc.bcm.edu hg19 4 88537080 88537088 + In_Frame_Del DEL ACAGCAGCA ACAGCAGCA - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 ACAGCAGCA ACAGCAGCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . DSPP NM_014208 exon5 c.3265_3273del p.1089_1091del . . 256.0 51.0 233.0 0.0 . 174 . . Atlas-INDEL NAA38 51691 hgsc.bcm.edu hg19 7 117832038 117832043 + In_Frame_Del DEL AAATTC AAATTC - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 AAATTC AAATTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . NAA38 NM_016200 exon4 c.272_277del p.91_93del . . 149.0 34.0 132.0 0.0 . 16 . . Atlas-INDEL MIER1 57708 hgsc.bcm.edu hg19 1 67450362 67450363 + Frame_Shift_Ins INS - - C novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . MIER1 NM_001077700 exon14 c.1477_1478insC p.D493fs . . 186.0 65.0 195.0 0.0 . 86 . . Atlas-INDEL CDKN2A 1029 hgsc.bcm.edu hg19 9 21974751 21974760 + Frame_Shift_Del DEL CTACCCGACC CTACCCGACC - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 CTACCCGACC CTACCCGACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . CDKN2A NM_058197 exon1 c.68_77del p.23_26del . . 83.0 26.0 79.0 0.0 . 4810 . . Atlas-INDEL GPRIN1 114787 hgsc.bcm.edu hg19 5 176026192 176026192 + Frame_Shift_Del DEL C C - novel TCGA-DD-AADG-01A-11D-A40R-10 TCGA-DD-AADG-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq bc83c53e-cd19-48a9-ae9c-a59c69b55438 54f60e9c-e44d-435e-8f76-5525282b610b . GPRIN1 NM_052899 exon2 c.645delA p.G215fs . . 103.0 22.0 56.0 0.0 . 77 . . Atlas-INDEL