Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MASP2	10747	hgsc.bcm.edu	hg19	1	11087077	11087077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	MASP2	NM_006610	exon11	c.T1926G	p.S642R	TGTTTCACTATCT	.	105.0	94.0	196.0	0.0	.	71	.	.	Atlas-SNP
RAVER2	55225	hgsc.bcm.edu	hg19	1	65243500	65243500	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	RAVER2	NM_018211	exon3	c.T511A	p.C171S	GAGAGATGTTTTC	.	116.0	40.0	109.0	0.0	.	56	.	.	Atlas-SNP
LRRC39	127495	hgsc.bcm.edu	hg19	1	100614954	100614954	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	LRRC39	NM_001256385	exon10	c.A990G	p.T330T	ATATATTGTCAGA	.	372.0	169.0	343.0	1.0	.	37	.	.	Atlas-SNP
HMGCS2	3158	hgsc.bcm.edu	hg19	1	120293471	120293471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	HMGCS2,NS,carcinoma,0,1	HMGCS2	NM_005518	exon9	c.G1481T	p.R494L	TCCACTCGCTCCA	.	100.0	38.0	94.0	0.0	.	58	.	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176563805	176563805	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	PAPPA2	NM_021936	exon3	c.C1065T	p.S355S	GATTAGCCACAGT	.	114.0	55.0	98.0	0.0	.	665	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181687238	181687238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CACNA1E	NM_001205293	exon12	c.C1573A	p.L525M	ATGTCCCTGAAGA	.	35.0	17.0	33.0	0.0	.	778	.	.	Atlas-SNP
TRMT1L	81627	hgsc.bcm.edu	hg19	1	185113145	185113145	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	TRMT1L	NM_030934	exon6	c.A672T	p.P224P	CTTAGGTGGTTTA	.	127.0	54.0	121.0	0.0	.	50	.	.	Atlas-SNP
ZNF281	23528	hgsc.bcm.edu	hg19	1	200377908	200377908	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ZNF281	NM_012482	exon2	c.A926C	p.K309T	TGAATTTTCTCAT	.	68.0	35.0	60.0	0.0	.	74	.	.	Atlas-SNP
ITPKB	3707	hgsc.bcm.edu	hg19	1	226923497	226923497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ITPKB	NM_002221	exon2	c.C1663A	p.P555T	GGAAAGGCTTGTC	.	73.0	28.0	52.0	0.0	.	158	.	.	Atlas-SNP
RGS7	6000	hgsc.bcm.edu	hg19	1	241262053	241262053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	RGS7,NS,carcinoma,0,1	RGS7	NM_002924	exon3	c.G88A	p.V30I	CTATGACGTCTTC	.	41.0	16.0	53.0	0.0	.	308	.	.	Atlas-SNP
ABCG5	64240	hgsc.bcm.edu	hg19	2	44041655	44041655	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ABCG5	NM_022436	exon12	c.C1723G	p.L575V	CTACAAGAATCTC	.	217.0	92.0	209.0	0.0	.	72	.	.	Atlas-SNP
VRK2	7444	hgsc.bcm.edu	hg19	2	58386604	58386604	+	Missense_Mutation	SNP	G	G	C	rs201610023	alternate_allele	TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	VRK2	NM_001130480	exon13	c.G1303C	p.D435H	CATCAAGATTTTA	.	178.0	71.0	174.0	0.0	.	46	.	G|0.999;A|0.001	Atlas-SNP
CNOT11	55571	hgsc.bcm.edu	hg19	2	101883295	101883295	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	.	NM_017546	exon5	c.C1192G	p.L398V	TCTGTCCTGGTCA	.	127.0	56.0	101.0	0.0	.	.	.	.	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	hg19	2	189875435	189875435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	COL3A1	NM_000090	exon50	c.G4073A	p.R1358Q	TCCTTCGACTTCT	.	142.0	49.0	133.0	0.0	.	292	.	.	Atlas-SNP
HSPD1	3329	hgsc.bcm.edu	hg19	2	198353917	198353917	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	HSPD1	NM_002156	exon9	c.T1024G	p.L342V	TTCCTAAGTCATG	.	424.0	176.0	327.0	0.0	.	68	.	.	Atlas-SNP
RNF123	63891	hgsc.bcm.edu	hg19	3	49737930	49737930	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	RNF123	NM_022064	exon14	c.A1136T	p.K379M	GCCTCAAGCAGTT	.	189.0	46.0	107.0	0.0	.	100	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121206681	121206681	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	POLQ	NM_199420	exon16	c.T5097C	p.N1699N	TACTTCATTATTA	.	81.0	38.0	88.0	0.0	.	273	.	.	Atlas-SNP
MYLK	4638	hgsc.bcm.edu	hg19	3	123444795	123444795	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	MYLK	NM_053025	exon12	c.G1647T	p.L549L	ACCATTCAGCAGC	.	459.0	210.0	502.0	1.0	.	224	.	.	Atlas-SNP
PLSCR4	57088	hgsc.bcm.edu	hg19	3	145912237	145912237	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	PLSCR4	NM_020353	exon9	c.C951T	p.F317F	ATACATGAAGTCC	.	74.0	34.0	73.0	0.0	.	44	.	.	Atlas-SNP
FXR1	8087	hgsc.bcm.edu	hg19	3	180666182	180666182	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	FXR1	NM_001013438	exon5	c.A318T	p.I106I	TGAAATAGTCACA	.	114.0	11.0	122.0	0.0	.	75	.	.	Atlas-SNP
CPZ	8532	hgsc.bcm.edu	hg19	4	8594614	8594614	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CPZ	NM_003652	exon1	c.C54A	p.A18A	CGCTGCCCGGCCG	.	137.0	50.0	119.0	0.0	.	95	.	.	Atlas-SNP
BEND4	389206	hgsc.bcm.edu	hg19	4	42122083	42122083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	BEND4	NM_207406	exon5	c.A1375G	p.T459A	GGCATGTTACTTT	.	121.0	46.0	98.0	0.0	.	67	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48517192	48517192	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	FRYL	NM_015030	exon56	c.T7790G	p.I2597S	TCAAGAATTCCTT	.	94.0	37.0	91.0	0.0	.	242	.	.	Atlas-SNP
TBC1D9	23158	hgsc.bcm.edu	hg19	4	141555157	141555157	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	TBC1D9	NM_015130	exon16	c.A2691G	p.L897L	ATCTAATAACTGG	.	104.0	45.0	99.0	0.0	.	198	.	.	Atlas-SNP
GAB1	2549	hgsc.bcm.edu	hg19	4	144381524	144381524	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	GAB1	NM_207123	exon9	c.A1777T	p.R593W	TCTTCCAGGTTTC	.	78.0	32.0	75.0	0.0	.	80	.	.	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	hg19	4	162307202	162307202	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	FSTL5	NM_020116	exon16	c.C2241G	p.S747S	AGTAAAGGATGGT	.	123.0	55.0	117.0	0.0	.	207	.	.	Atlas-SNP
CEP44	80817	hgsc.bcm.edu	hg19	4	175220276	175220276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CEP44	NM_001040157	exon3	c.G4A	p.A2T	GTAATGGCAACAG	.	73.0	20.0	76.0	0.0	.	35	.	.	Atlas-SNP
BRIX1	55299	hgsc.bcm.edu	hg19	5	34922835	34922835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	BRIX1	NM_018321	exon6	c.T472C	p.C158R	GGAAACTGTTTGA	.	261.0	91.0	270.0	0.0	.	21	.	.	Atlas-SNP
SETD9	133383	hgsc.bcm.edu	hg19	5	56212656	56212656	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	.	NM_153706	exon6	c.T827G	p.V276G	GATGTGTTGTTCT	.	77.0	35.0	68.0	0.0	.	.	.	.	Atlas-SNP
DIAPH1	1729	hgsc.bcm.edu	hg19	5	140958709	140958709	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	DIAPH1	NM_005219	exon9	c.A879G	p.E293E	GAAACGTTCCACT	.	169.0	76.0	160.0	0.0	.	64	.	.	Atlas-SNP
FLT4	2324	hgsc.bcm.edu	hg19	5	180040034	180040034	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	FLT4	NM_182925	exon25	c.C3408T	p.A1136A	CTCCGGGGCCCTC	.	89.0	34.0	85.0	0.0	.	356	.	.	Atlas-SNP
AARS2	57505	hgsc.bcm.edu	hg19	6	44275036	44275036	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	AARS2	NM_020745	exon6	c.A990T	p.T330T	ACTGAGTGTGCGG	.	70.0	25.0	56.0	0.0	.	77	.	.	Atlas-SNP
AARS2	57505	hgsc.bcm.edu	hg19	6	44275037	44275037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	AARS2	NM_020745	exon6	c.C989T	p.T330I	CTGAGTGTGCGGA	.	70.0	24.0	57.0	0.0	.	77	.	.	Atlas-SNP
GPR110	266977	hgsc.bcm.edu	hg19	6	46975013	46975013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	GPR110	NM_153840	exon12	c.T2509C	p.F837L	TTCCAAAGCATAA	.	340.0	150.0	370.0	0.0	.	102	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56494214	56494214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	DST	NM_001723	exon18	c.A2698G	p.R900G	CCTGTCTCTTTTC	.	78.0	32.0	84.0	0.0	.	1427	.	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	hg19	6	144783861	144783861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	UTRN	NM_007124	exon22	c.G2925T	p.E975D	TCTGGAGAAAAAT	.	189.0	79.0	222.0	0.0	.	327	.	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	hg19	6	144808683	144808683	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	UTRN	NM_007124	exon28	c.3823-1G>T	.	ATTCCAGTCTCTG	.	74.0	34.0	59.0	0.0	.	327	.	.	Atlas-SNP
SP8	221833	hgsc.bcm.edu	hg19	7	20823935	20823935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	SP8	NM_182700	exon2	c.C1501G	p.P501A	GCCCGGGCTCGGG	.	22.0	6.0	15.0	0.0	.	43	.	.	Atlas-SNP
LIMK1	3984	hgsc.bcm.edu	hg19	7	73521439	73521439	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	LIMK1	NM_002314	exon8	c.C981G	p.V327V	CGTAGTCTGCCGG	.	92.0	39.0	78.0	0.0	.	55	.	.	Atlas-SNP
HIP1	3092	hgsc.bcm.edu	hg19	7	75174049	75174049	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	HIP1	NM_005338	exon27	c.A2710T	p.M904L	ACACCATTAGCTC	.	101.0	34.0	87.0	0.0	.	91	.	.	Atlas-SNP
SLC26A4	5172	hgsc.bcm.edu	hg19	7	107350597	107350597	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	SLC26A4	NM_000441	exon19	c.C2188G	p.Q730E	TATCTACAGAACC	.	134.0	62.0	130.0	0.0	.	117	.	.	Atlas-SNP
WDR91	29062	hgsc.bcm.edu	hg19	7	134874129	134874129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	WDR91	NM_014149	exon12	c.A1735G	p.T579A	CCCCTGTGACCAG	.	140.0	53.0	127.0	0.0	.	82	.	.	Atlas-SNP
ATAD2	29028	hgsc.bcm.edu	hg19	8	124335222	124335222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ATAD2	NM_014109	exon27	c.A4087G	p.I1363V	GATAAATACATTG	.	338.0	273.0	86.0	0.0	.	160	.	.	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	hg19	8	139263244	139263244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	FAM135B	NM_015912	exon6	c.G382T	p.A128S	CCCCAGCCACATC	.	310.0	45.0	84.0	0.0	.	423	.	.	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	hg19	8	141745494	141745494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	PTK2	NM_005607	exon22	c.A1952G	p.N651S	ACATCATTGTTCT	.	218.0	153.0	106.0	0.0	.	311	.	.	Atlas-SNP
CDKN2A	1029	hgsc.bcm.edu	hg19	9	21971108	21971108	+	Missense_Mutation	SNP	C	C	A	rs11552822	bycluster	TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	CDKN2A_ENST00000498124,left_upper_lobe,carcinoma,0,3	CDKN2A	NM_058195	exon2	c.G293T	p.R98L	CAGCGTCGTGCAC	.	104.0	43.0	113.0	0.0	.	4810	.	C|1.000;|0.000	Atlas-SNP
UBAP2	55833	hgsc.bcm.edu	hg19	9	33922747	33922747	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	UBAP2	NM_018449	exon28	c.T3202A	p.L1068M	CTGGCAAGATGTG	.	69.0	37.0	56.0	0.0	.	82	.	.	Atlas-SNP
FOXE1	2304	hgsc.bcm.edu	hg19	9	100616728	100616728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	FOXE1	NM_004473	exon1	c.G532A	p.A178T	GCCGCCGCCGCCA	.	212.0	14.0	123.0	0.0	.	19	.	.	Atlas-SNP
RABL6	55684	hgsc.bcm.edu	hg19	9	139733868	139733868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	.	NM_001173988	exon12	c.C1691A	p.A564E	TTGCTGCACAAAT	.	146.0	98.0	124.0	0.0	.	.	.	.	Atlas-SNP
RABL6	55684	hgsc.bcm.edu	hg19	9	139733888	139733888	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	.	NM_001173988	exon12	c.A1711C	p.M571L	TTCGTCATGGATG	.	166.0	108.0	129.0	0.0	.	.	.	.	Atlas-SNP
ADARB2	105	hgsc.bcm.edu	hg19	10	1405703	1405703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ADARB2	NM_018702	exon3	c.C597A	p.H199Q	GGCCAGGTGCGCC	.	131.0	55.0	115.0	0.0	.	95	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17087153	17087153	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CUBN	NM_001081	exon25	c.G3525T	p.T1175T	TATGAACGTGCCG	.	158.0	63.0	162.0	0.0	.	515	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17113590	17113590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CUBN	NM_001081	exon19	c.A2460C	p.E820D	AGTTAATTCATCC	.	35.0	15.0	34.0	0.0	.	515	.	.	Atlas-SNP
CTNNA3	29119	hgsc.bcm.edu	hg19	10	69407267	69407267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CTNNA3	NM_013266	exon2	c.C5T	p.S2L	TCAGCTGACATGC	.	55.0	26.0	54.0	0.0	.	401	.	.	Atlas-SNP
KIF11	3832	hgsc.bcm.edu	hg19	10	94373259	94373259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	KIF11	NM_004523	exon8	c.A915T	p.R305S	AGAAAGAACACCT	.	96.0	43.0	107.0	0.0	.	58	.	.	Atlas-SNP
COX15	1355	hgsc.bcm.edu	hg19	10	101491746	101491746	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	COX15	NM_078470	exon1	c.C61T	p.L21L	GAGCCAGGAGCGG	.	183.0	96.0	181.0	0.0	.	25	.	.	Atlas-SNP
OTUB1	55611	hgsc.bcm.edu	hg19	11	63765004	63765004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	OTUB1	NM_017670	exon7	c.A802G	p.I268V	TACGATATCCTCT	.	25.0	18.0	60.0	0.0	.	19	.	.	Atlas-SNP
TAS2R13	50838	hgsc.bcm.edu	hg19	12	11061798	11061798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	TAS2R13	NM_023920	exon1	c.G100T	p.D34Y	CCCAGTCAATGCA	.	72.0	29.0	70.0	0.0	.	29	.	.	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	hg19	12	32134716	32134716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	.	NM_018169	exon4	c.G827A	p.R276K	ACAAAAGACCTCC	.	79.0	24.0	64.0	0.0	.	.	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43884211	43884211	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ADAMTS20	NM_025003	exon7	c.A1104C	p.K368N	GTTACATTTCTCT	.	458.0	207.0	480.0	0.0	.	635	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49433090	49433090	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	MLL2	NM_003482	exon33	c.C8281T	p.L2761L	GCCCCAGGATGGG	.	102.0	52.0	73.0	0.0	.	1173	.	.	Atlas-SNP
KRT72	140807	hgsc.bcm.edu	hg19	12	52979915	52979915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	KRT72	NM_001146225	exon9	c.T1387C	p.F463L	TGCTGAAGCCAGC	.	58.0	19.0	58.0	0.0	.	70	.	.	Atlas-SNP
CNOT2	4848	hgsc.bcm.edu	hg19	12	70724084	70724084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CNOT2	NM_001199302	exon7	c.A404G	p.N135S	CTATGAATCCTAG	.	89.0	32.0	97.0	0.0	.	53	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88522769	88522769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CEP290	NM_025114	exon11	c.A896G	p.D299G	GGATCATCTTCTT	.	38.0	18.0	26.0	0.0	.	195	.	.	Atlas-SNP
PEBP1	5037	hgsc.bcm.edu	hg19	12	118577335	118577335	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	PEBP1	NM_002567	exon3	c.T325A	p.S109T	GTGGGCTCGGGGC	.	69.0	29.0	82.0	0.0	.	13	.	.	Atlas-SNP
PSMC6	5706	hgsc.bcm.edu	hg19	14	53185036	53185036	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	PSMC6	NM_002806	exon9	c.A723G	p.P241P	TCAACCATGCATC	.	114.0	54.0	120.0	0.0	.	71	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102453099	102453099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	DYNC1H1	NM_001376	exon8	c.A2537G	p.K846R	AAGAAAAGGTATG	.	39.0	30.0	48.0	0.0	.	395	.	.	Atlas-SNP
POLR2M	81488	hgsc.bcm.edu	hg19	15	58000999	58000999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	POLR2M	NM_015532	exon2	c.A201C	p.E67D	TGAAGAAGTTAGA	.	175.0	69.0	191.0	0.0	.	2	.	.	Atlas-SNP
MYH11	4629	hgsc.bcm.edu	hg19	16	15797859	15797859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	MYH11	NM_001040114	exon42	c.G5929T	p.A1977S	CACTGGCCTTGGT	.	130.0	49.0	114.0	0.0	.	520	.	.	Atlas-SNP
ZNF785	146540	hgsc.bcm.edu	hg19	16	30594587	30594587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ZNF785	NM_152458	exon3	c.C512T	p.P171L	GAGTGGGGCAGTC	.	76.0	32.0	84.0	0.0	.	30	.	.	Atlas-SNP
COG8	84342	hgsc.bcm.edu	hg19	16	69364961	69364961	+	Silent	SNP	T	T	C	rs189199610	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	COG8	NM_032382	exon5	c.A1620G	p.L540L	ATGCCCTAGGTTA	.	71.0	32.0	109.0	0.0	.	32	.	T|0.997;G|0.003	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84227641	84227641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ADAD2	NM_139174	exon2	c.G448A	p.G150R	CCTGGAGGAGAGG	.	167.0	82.0	164.0	0.0	.	46	.	.	Atlas-SNP
ATP2C2	9914	hgsc.bcm.edu	hg19	16	84402321	84402321	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ATP2C2	NM_014861	exon1	c.99+1G>A	.	GCCTTGGTGAGTC	.	256.0	115.0	260.0	0.0	.	75	.	.	Atlas-SNP
CCDC144A	9720	hgsc.bcm.edu	hg19	17	16676815	16676815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CCDC144A	NM_014695	exon18	c.T4256C	p.L1419P	AGCTGCTACTAAA	.	134.0	101.0	263.0	0.0	.	53	.	.	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	hg19	17	21319861	21319861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	.	NM_001194958	exon3	c.G1207A	p.G403S	CGGGACGGCCTCA	.	44.0	7.0	43.0	0.0	.	.	.	.	Atlas-SNP
TMEM132E	124842	hgsc.bcm.edu	hg19	17	32955721	32955721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	TMEM132E	NM_207313	exon4	c.C868A	p.P290T	CCCCTGCCCCCCA	.	57.0	23.0	65.0	0.0	.	122	.	.	Atlas-SNP
KRT9	3857	hgsc.bcm.edu	hg19	17	39727697	39727697	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	KRT9	NM_000226	exon1	c.A548T	p.N183I	ATCTTATTCTCCA	.	149.0	42.0	78.0	0.0	.	78	.	.	Atlas-SNP
ABCA9	10350	hgsc.bcm.edu	hg19	17	67013796	67013796	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ABCA9	NM_080283	exon22	c.2901+1G>C	.	AGCATACCTTTTC	.	128.0	17.0	107.0	0.0	.	192	.	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	hg19	17	71412072	71412072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	SDK2	NM_001144952	exon17	c.T2246C	p.V749A	TTGTTCACATCAG	.	100.0	19.0	71.0	0.0	.	219	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80041199	80041199	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	FASN	NM_004104	exon32	c.A5444C	p.Q1815P	CCGGCCTGCACAA	.	161.0	45.0	72.0	0.0	.	154	.	.	Atlas-SNP
THOC1	9984	hgsc.bcm.edu	hg19	18	224989	224989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	THOC1	NM_005131	exon15	c.A1143G	p.I381M	GTTTAATATATGC	.	63.0	50.0	129.0	0.0	.	43	.	.	Atlas-SNP
CELF5	60680	hgsc.bcm.edu	hg19	19	3281279	3281279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CELF5	NM_021938	exon6	c.A686G	p.Q229R	TGGGCCAGCTGGG	.	15.0	12.0	30.0	0.0	.	32	.	.	Atlas-SNP
C3	718	hgsc.bcm.edu	hg19	19	6677908	6677908	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	C3	NM_000064	exon41	c.T4977C	p.F1659F	GCACCCAAAGACA	.	39.0	30.0	53.0	0.0	.	192	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9091765	9091765	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	MUC16	NM_024690	exon1	c.T50A	p.L17X	GTCATCAAGGAGC	.	89.0	69.0	133.0	0.0	.	4315	.	.	Atlas-SNP
PALM3	342979	hgsc.bcm.edu	hg19	19	14165531	14165531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	PALM3	NM_001145028	exon6	c.C908T	p.S303L	CTAGGCGAGCTAG	.	46.0	14.0	38.0	0.0	.	26	.	.	Atlas-SNP
SLC35E1	79939	hgsc.bcm.edu	hg19	19	16683112	16683112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	SLC35E1	NM_024881	exon1	c.G64A	p.G22S	CCCCACCACTGCT	.	43.0	24.0	34.0	0.0	.	48	.	.	Atlas-SNP
JAK3	3718	hgsc.bcm.edu	hg19	19	17945987	17945987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	JAK3	NM_000215	exon15	c.G1952A	p.R651Q	ACCTTCCGGGCAG	.	88.0	29.0	68.0	0.0	.	341	.	.	Atlas-SNP
WDR88	126248	hgsc.bcm.edu	hg19	19	33655144	33655144	+	Missense_Mutation	SNP	C	C	A	rs1981827	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	WDR88	NM_173479	exon9	c.C1122A	p.N374K	CAACAACAAGAAA	.	142.0	65.0	134.0	0.0	.	50	.	C|0.874;T|0.126	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42853808	42853808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	MEGF8	NM_001271938	exon14	c.A2456G	p.E819G	ACAGCGAGCTAAC	.	57.0	23.0	60.0	0.0	.	358	.	.	Atlas-SNP
PRKD2	25865	hgsc.bcm.edu	hg19	19	47214210	47214210	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	PRKD2,NS,carcinoma,0,1	PRKD2	NM_016457	exon3	c.C465A	p.C155X	CTCCCCGCAGTGA	.	74.0	4.0	54.0	0.0	.	94	.	.	Atlas-SNP
NOSIP	51070	hgsc.bcm.edu	hg19	19	50060189	50060189	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	NOSIP	NM_015953	exon7	c.C480T	p.P160P	GAAGCTGGGCAGC	.	105.0	39.0	92.0	0.0	.	28	.	.	Atlas-SNP
ZNF415	55786	hgsc.bcm.edu	hg19	19	53612357	53612357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ZNF415	NM_018355	exon4	c.G941T	p.C314F	GCAAGGCATGAAT	.	38.0	15.0	42.0	0.0	.	68	.	.	Atlas-SNP
ZNF304	57343	hgsc.bcm.edu	hg19	19	57868571	57868571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ZNF304	NM_020657	exon3	c.G1334T	p.R445I	GAGCAAGATCCTA	.	166.0	68.0	143.0	0.0	.	74	.	.	Atlas-SNP
FOXA2	3170	hgsc.bcm.edu	hg19	20	22562785	22562785	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	FOXA2	NM_021784	exon2	c.G1095T	p.P365P	CTCAGGCGGCAGG	.	72.0	25.0	71.0	0.0	.	48	.	.	Atlas-SNP
MYH7B	57644	hgsc.bcm.edu	hg19	20	33585321	33585321	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	MYH7B	NM_020884	exon32	c.G3751T	p.E1251X	GCGGCGGAGCTGG	.	40.0	17.0	45.0	0.0	.	145	.	.	Atlas-SNP
CTNNBL1	56259	hgsc.bcm.edu	hg19	20	36374896	36374896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CTNNBL1	NM_030877	exon4	c.A353G	p.N118S	ACCTAAATGACAT	.	49.0	23.0	49.0	0.0	.	78	.	.	Atlas-SNP
ZNF335	63925	hgsc.bcm.edu	hg19	20	44592541	44592541	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ZNF335	NM_022095	exon8	c.A1191T	p.P397P	GTGTCCTGGGCCT	.	100.0	56.0	67.0	0.0	.	115	.	.	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58489232	58489232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	SYCP2	NM_014258	exon10	c.C709T	p.H237Y	ACTGATGTGCCAG	.	185.0	55.0	145.0	0.0	.	204	.	.	Atlas-SNP
IGSF5	150084	hgsc.bcm.edu	hg19	21	41163986	41163986	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	IGSF5	NM_001080444	exon7	c.T1008A	p.N336K	TGGAAATGAAAAC	.	221.0	163.0	431.0	0.0	.	62	.	.	Atlas-SNP
LZTR1	8216	hgsc.bcm.edu	hg19	22	21348001	21348001	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	LZTR1	NM_006767	exon12	c.G1311A	p.W437X	GCTGTGGGAGAGC	.	42.0	4.0	61.0	0.0	.	99	.	.	Atlas-SNP
ARMCX2	9823	hgsc.bcm.edu	hg19	X	100911129	100911129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ARMCX2	NM_014782	exon5	c.C1446A	p.N482K	TGCTGAGTTCAGG	.	61.0	53.0	50.0	0.0	.	75	.	.	Atlas-SNP
CXorf48	54967	hgsc.bcm.edu	hg19	X	134305029	134305029	+	Missense_Mutation	SNP	C	C	A	rs367724422	alternate_allele	TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CXorf48	NM_017863	exon1	c.G67T	p.G23C	GTGGGCCCTGTCG	.	96.0	85.0	87.0	0.0	.	17	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15063	15063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	.	ENST00000361789	exon1	c.C317T	p.S106L	ACGGATCATTTCT	.	53.0	14.0	20.0	0.0	.	.	.	.	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	hg19	7	150761611	150761633	+	Frame_Shift_Del	DEL	TCCTCCCTGCAGACCACCGCCAG	TCCTCCCTGCAGACCACCGCCAG	-	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	TCCTCCCTGCAGACCACCGCCAG	TCCTCCCTGCAGACCACCGCCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	SLC4A2	NM_001199692	exon4	c.218_227del	p.73_76del	.	.	91.0	24.0	88.0	0.0	.	98	.	.	Atlas-INDEL
USP34	9736	hgsc.bcm.edu	hg19	2	61538926	61538926	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	USP34	NM_014709	exon26	c.3663delT	p.P1221fs	.	.	56.0	25.0	57.0	0.0	.	334	.	.	Atlas-INDEL
CRMP1	1400	hgsc.bcm.edu	hg19	4	5827327	5827327	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	CRMP1	NM_001014809	exon13	c.1864delG	p.A622fs	.	.	170.0	67.0	175.0	0.0	.	118	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74276072	74276073	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	ALB	NM_000477	exon6	c.658_659del	p.220_220del	.	.	330.0	132.0	344.0	0.0	.	132	.	.	Atlas-INDEL
NDUFS6	4726	hgsc.bcm.edu	hg19	5	1802445	1802445	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAD6-01A-11D-A40R-10	TCGA-DD-AAD6-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e38cc549-ebc1-45a9-82a3-3f17720f4c67	d61125a0-8951-47b0-a531-d4685f12039c	.	NDUFS6	NM_004553	exon2	c.142delG	p.D48fs	.	.	132.0	56.0	111.0	0.0	.	11	.	.	Atlas-INDEL