Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CASP9	842	hgsc.bcm.edu	hg19	1	15821795	15821795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	CASP9	NM_001229	exon7	c.A1021G	p.I341V	CAAAGATGTCACT	.	148.0	6.0	217.0	0.0	.	40	.	.	Atlas-SNP
TMEM54	113452	hgsc.bcm.edu	hg19	1	33361532	33361532	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	TMEM54	NM_033504	exon3	c.C249A	p.R83R	GAGGTAGCGTGAC	.	85.0	6.0	86.0	0.0	.	12	.	.	Atlas-SNP
MAP7D1	55700	hgsc.bcm.edu	hg19	1	36643703	36643703	+	Missense_Mutation	SNP	A	A	G	rs200892098		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.,2	MAP7D1	NM_018067	exon9	c.A1609G	p.K537E	AACGAGAAGGAGT	.	26.0	25.0	2.0	0.0	.	62	.	.	Atlas-SNP
B4GALT2	8704	hgsc.bcm.edu	hg19	1	44456052	44456052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	B4GALT2	NM_030587	exon7	c.C1138T	p.R380W	GTGTCTCGGCAAC	.	133.0	20.0	150.0	0.0	.	35	.	.	Atlas-SNP
CYP4A22	284541	hgsc.bcm.edu	hg19	1	47611805	47611805	+	Silent	SNP	G	G	T	rs140647389	alternate_allele	TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	CYP4A22	NM_001010969	exon11	c.G1344T	p.L448L	TTTCCTGCCCTTC	.	198.0	53.0	292.0	0.0	.	60	.	G|1.000;A|0.000	Atlas-SNP
BARHL2	343472	hgsc.bcm.edu	hg19	1	91180225	91180225	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	BARHL2	NM_020063	exon2	c.T714A	p.A238A	GGAAAAAGCTGTC	.	141.0	9.0	135.0	0.0	.	62	.	.	Atlas-SNP
NBPF6	653149	hgsc.bcm.edu	hg19	1	109010228	109010228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	NBPF6	NM_001143987	exon15	c.C1903T	p.P635S	AGACTCCCGTTCA	.	944.0	163.0	1128.0	0.0	.	4	.	.	Atlas-SNP
LCE5A	254910	hgsc.bcm.edu	hg19	1	152484138	152484138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	LCE5A	NM_178438	exon2	c.C128T	p.P43L	CAGCCCCATGCCC	.	220.0	9.0	194.0	0.0	.	15	.	.	Atlas-SNP
GON4L	54856	hgsc.bcm.edu	hg19	1	155823539	155823539	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	GON4L	NM_001037533	exon2	c.G33T	p.V11V	CTCTGTCACTGTA	.	120.0	55.0	132.0	0.0	.	392	.	.	Atlas-SNP
FAM163A	148753	hgsc.bcm.edu	hg19	1	179783118	179783118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	FAM163A	NM_173509	exon5	c.C298A	p.P100T	TGCTCCCCATACA	.	245.0	55.0	249.0	0.0	.	24	.	.	Atlas-SNP
C1orf131	128061	hgsc.bcm.edu	hg19	1	231376848	231376848	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	C1orf131	NM_152379	exon1	c.G40T	p.E14X	CTTGCTCCTGCGA	.	261.0	16.0	235.0	0.0	.	30	.	.	Atlas-SNP
RGS7	6000	hgsc.bcm.edu	hg19	1	240969620	240969620	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	RGS7	NM_002924	exon15	c.G1089C	p.W363C	TGCCAGCCAGAAT	.	114.0	63.0	86.0	0.0	.	308	.	.	Atlas-SNP
RBKS	64080	hgsc.bcm.edu	hg19	2	28113208	28113208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	RBKS	NM_022128	exon1	c.C5T	p.A2V	GACGCCGCCATCG	.	33.0	13.0	37.0	0.0	.	23	.	.	Atlas-SNP
RBKS	64080	hgsc.bcm.edu	hg19	2	28113209	28113209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	RBKS	NM_022128	exon1	c.G4T	p.A2S	ACGCCGCCATCGC	.	33.0	13.0	37.0	0.0	.	23	.	.	Atlas-SNP
RBKS	64080	hgsc.bcm.edu	hg19	2	28113210	28113210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	RBKS	NM_022128	exon1	c.G3T	p.M1I	CGCCGCCATCGCT	.	32.0	13.0	37.0	0.0	.	23	.	.	Atlas-SNP
DCTN1	1639	hgsc.bcm.edu	hg19	2	74596526	74596526	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	DCTN1	NM_004082	exon14	c.G1485T	p.R495R	ACGAACCCGCGCG	.	98.0	32.0	92.0	0.0	.	110	.	.	Atlas-SNP
GGCX	2677	hgsc.bcm.edu	hg19	2	85788530	85788530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	GGCX	NM_000821	exon1	c.G22A	p.A8T	TCCGCGCGGACCC	.	173.0	60.0	220.0	0.0	.	44	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212543805	212543805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ERBB4	NM_001042599	exon13	c.T1594C	p.C532R	CTATGCAGATCCT	.	339.0	33.0	351.0	0.0	.	480	.	.	Atlas-SNP
ZCWPW2	152098	hgsc.bcm.edu	hg19	3	28476749	28476749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ZCWPW2	NM_001040432	exon3	c.A481G	p.I161V	TATAGTATCACAT	.	381.0	123.0	355.0	0.0	.	49	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	hg19	3	49723115	49723115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	MST1	NM_020998	exon11	c.G1301A	p.R434Q	GGGTTCCGGCAGA	.	146.0	6.0	140.0	0.0	.	84	.	.	Atlas-SNP
IMPG2	50939	hgsc.bcm.edu	hg19	3	100947684	100947684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	IMPG2	NM_016247	exon18	c.G3670T	p.A1224S	CATTGGCATACAG	.	93.0	24.0	122.0	0.0	.	164	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	hg19	3	164773036	164773036	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	SI	NM_001041	exon13	c.G1458C	p.W486C	ATTTGCCCACCAA	.	102.0	29.0	111.0	0.0	.	500	.	.	Atlas-SNP
GPR78	27201	hgsc.bcm.edu	hg19	4	8582915	8582915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	GPR78	NM_080819	exon1	c.G206A	p.R69H	TGATGCGCGGGCG	.	52.0	13.0	67.0	0.0	.	58	.	.	Atlas-SNP
STBD1	8987	hgsc.bcm.edu	hg19	4	77231063	77231063	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	STBD1	NM_003943	exon2	c.G987T	p.G329G	GAATGGGGGAGTT	.	113.0	53.0	116.0	0.0	.	22	.	.	Atlas-SNP
ADH5	128	hgsc.bcm.edu	hg19	4	100002517	100002517	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ADH5	NM_000671	exon4	c.A343T	p.R115X	CTAACCTTATCTT	.	304.0	130.0	429.0	0.0	.	23	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126242565	126242565	+	Missense_Mutation	SNP	A	A	G	rs369211657	alternate_allele	TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	FAT4	NM_024582	exon1	c.A4999G	p.I1667V	TATTATATTGTTT	.	237.0	58.0	159.0	0.0	.	1752	.	.	Atlas-SNP
TIGD4	201798	hgsc.bcm.edu	hg19	4	153691328	153691328	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	TIGD4	NM_145720	exon2	c.C829G	p.Q277E	GGGCTTGAAATTC	.	131.0	16.0	124.0	0.0	.	53	.	.	Atlas-SNP
LRAT	9227	hgsc.bcm.edu	hg19	4	155665788	155665788	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	LRAT	NM_004744	exon2	c.A310C	p.K104Q	ATTGTCAAAGTGG	.	118.0	40.0	120.0	0.0	.	29	.	.	Atlas-SNP
DDX4	54514	hgsc.bcm.edu	hg19	5	55081630	55081630	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	DDX4	NM_024415	exon13	c.C795A	p.G265G	GACAGGCATAAAC	.	217.0	63.0	245.0	0.0	.	194	.	.	Atlas-SNP
PLK2	10769	hgsc.bcm.edu	hg19	5	57750578	57750578	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	PLK2	NM_006622	exon14	c.A1890G	p.T630T	GATTTTTGTATGA	.	167.0	46.0	181.0	0.0	.	71	.	.	Atlas-SNP
PCDHB5	26167	hgsc.bcm.edu	hg19	5	140516856	140516856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	PCDHB5	NM_015669	exon1	c.T1840C	p.F614L	GGGCTGTTCAGCA	.	47.0	15.0	74.0	0.0	.	184	.	.	Atlas-SNP
FGFR4	2264	hgsc.bcm.edu	hg19	5	176520328	176520328	+	Missense_Mutation	SNP	G	G	T	rs200070761	by1000genomes;alternate_allele	TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	FGFR4	NM_002011	exon9	c.G1247T	p.R416L	TGGCCCGACAGGT	.	131.0	6.0	179.0	0.0	.	174	.	G|1.000;A|0.000	Atlas-SNP
BMP6	654	hgsc.bcm.edu	hg19	6	7879308	7879308	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	BMP6	NM_001718	exon5	c.T1206C	p.D402D	AACAGATTACAAC	.	173.0	50.0	142.0	0.0	.	67	.	.	Atlas-SNP
RANBP9	10048	hgsc.bcm.edu	hg19	6	13622650	13622650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	RANBP9	NM_005493	exon14	c.G2134A	p.A712T	ATCGAGCCATCAG	.	128.0	35.0	93.0	0.0	.	42	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32183114	32183114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	NOTCH4	NM_004557	exon12	c.A1910C	p.K637T	ATCTGCTTGGGCT	.	111.0	22.0	66.0	0.0	.	201	.	.	Atlas-SNP
SLC39A7	7922	hgsc.bcm.edu	hg19	6	33170833	33170833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	SLC39A7	NM_006979	exon6	c.G1087A	p.E363K	CCCCACGAGGTCG	.	121.0	33.0	114.0	0.0	.	32	.	.	Atlas-SNP
KCNK17	89822	hgsc.bcm.edu	hg19	6	39271749	39271749	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	KCNK17_ENST00000453413,NS,carcinoma,0,4	KCNK17	NM_001135111	exon4	c.C672T	p.F224F	GTCGCCGAAGCCC	.	101.0	6.0	80.0	0.0	.	61	.	.	Atlas-SNP
TJAP1	93643	hgsc.bcm.edu	hg19	6	43470061	43470061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	TJAP1	NM_080604	exon7	c.G331A	p.E111K	AACCAGGAGTTGG	.	107.0	22.0	65.0	0.0	.	35	.	.	Atlas-SNP
TINAG	27283	hgsc.bcm.edu	hg19	6	54191649	54191649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	TINAG	NM_014464	exon4	c.G559T	p.G187C	GAAGATGGTTTTA	.	216.0	9.0	178.0	0.0	.	102	.	.	Atlas-SNP
HDAC9	9734	hgsc.bcm.edu	hg19	7	18624963	18624963	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	HDAC9	NM_001204144	exon5	c.A208T	p.T70S	CTAAGGACAGACC	.	186.0	30.0	167.0	0.0	.	560	.	.	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	hg19	7	77789511	77789511	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	MAGI2	NM_012301	exon16	c.C2676A	p.T892T	GGTGTAGGTTGCG	.	152.0	16.0	171.0	0.0	.	246	.	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	hg19	7	88964202	88964202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ZNF804B	NM_181646	exon4	c.A1906G	p.K636E	TTTAAAAAGCATA	.	192.0	55.0	228.0	0.0	.	322	.	.	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104753037	104753037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	MLL5	NM_018682	exon26	c.T4834G	p.S1612A	TTGCCCTCTCAGA	.	109.0	7.0	122.0	0.0	.	173	.	.	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	hg19	7	113518594	113518594	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	PPP1R3A	NM_002711	exon4	c.C2553T	p.V851V	TGTAATGACCCAT	.	136.0	15.0	145.0	0.0	.	317	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52287173	52287173	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	PXDNL	NM_144651	exon18	c.C3676T	p.L1226L	CTCTTAGCCGCTG	.	100.0	31.0	141.0	0.0	.	414	.	.	Atlas-SNP
PTAR1	375743	hgsc.bcm.edu	hg19	9	72333569	72333569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	PTAR1	NM_001099666	exon7	c.A979G	p.N327D	TACCATTTAAGTG	.	53.0	23.0	93.0	0.0	.	46	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76789169	76789169	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	.	NM_012330	exon18	c.G4587A	p.E1529E	CAAAGAGGGAAAC	.	140.0	50.0	161.0	0.0	.	.	.	.	Atlas-SNP
LRIT1	26103	hgsc.bcm.edu	hg19	10	85992484	85992484	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	LRIT1	NM_015613	exon4	c.C1071G	p.S357R	TCCTGGGCTCCCA	.	96.0	23.0	125.0	0.0	.	73	.	.	Atlas-SNP
IDE	3416	hgsc.bcm.edu	hg19	10	94250296	94250296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	IDE	NM_004969	exon12	c.A1487G	p.Y496C	GTTCCATACCACT	.	107.0	12.0	99.0	0.0	.	77	.	.	Atlas-SNP
TLL2	7093	hgsc.bcm.edu	hg19	10	98133500	98133500	+	Missense_Mutation	SNP	C	C	T	rs141213956		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	TLL2	NM_012465	exon19	c.G2515A	p.G839R	CCGGCCCGTCATA	.	69.0	23.0	90.0	0.0	.	122	.	C|1.000;T|0.000	Atlas-SNP
RNH1	6050	hgsc.bcm.edu	hg19	11	499113	499113	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	RNH1	NM_203384	exon5	c.C516T	p.F172F	CTCCTTGAAGTCC	.	87.0	10.0	107.0	0.0	.	24	.	.	Atlas-SNP
TRIM6-TRIM34	445372	hgsc.bcm.edu	hg19	11	5653572	5653572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	TRIM6-TRIM34,NS,carcinoma,0,2	TRIM6-TRIM34	NM_001003819	exon8	c.A1073G	p.K358R	CTTCAAAAATCTT	.	128.0	16.0	135.0	0.0	.	68	.	.	Atlas-SNP
ELP4	26610	hgsc.bcm.edu	hg19	11	31669307	31669307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ELP4	NM_019040	exon8	c.C946T	p.R316C	ATTGCCCGTGTCA	.	143.0	40.0	182.0	0.0	.	78	.	.	Atlas-SNP
OR4A5	81318	hgsc.bcm.edu	hg19	11	51411980	51411980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	OR4A5	NM_001005272	exon1	c.G416T	p.C139F	AGGAAGCAAACCT	.	147.0	6.0	145.0	0.0	.	116	.	.	Atlas-SNP
CCDC89	220388	hgsc.bcm.edu	hg19	11	85396947	85396947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	CCDC89	NM_152723	exon1	c.T227C	p.L76P	CAGATGAGCTGGG	.	62.0	19.0	57.0	0.0	.	45	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105775994	105775994	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	GRIA4	NM_001077244	exon9	c.T1125G	p.D375E	AATGGATGTGTTT	.	90.0	32.0	96.0	0.0	.	380	.	.	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	hg19	12	7045873	7045873	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ATN1	NM_001007026	exon5	c.T1443C	p.H481H	TCACCATCACCAC	.	100.0	7.0	99.0	0.0	.	95	.	.	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	hg19	12	20799827	20799827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	PDE3A,NS,lymphoid_neoplasm,0,1	PDE3A	NM_000921	exon12	c.C2508A	p.H836Q	CATGCACGATTAT	.	167.0	50.0	188.0	0.0	.	184	.	.	Atlas-SNP
ALG10B	144245	hgsc.bcm.edu	hg19	12	38714365	38714365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ALG10B	NM_001013620	exon3	c.A772G	p.I258V	CCCTACATCCTTC	.	134.0	42.0	187.0	0.0	.	58	.	.	Atlas-SNP
OR9K2	441639	hgsc.bcm.edu	hg19	12	55523606	55523606	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	OR9K2,NS,carcinoma,0,1	OR9K2	NM_001005243	exon1	c.A54G	p.Q18Q	CTCTCAACAGGTT	.	98.0	12.0	105.0	0.0	.	63	.	.	Atlas-SNP
STAT6	6778	hgsc.bcm.edu	hg19	12	57499293	57499293	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	STAT6	NM_001178079	exon8	c.T770A	p.L257Q	CCAGTCAGCGATG	.	90.0	28.0	111.0	0.0	.	69	.	.	Atlas-SNP
ANO4	121601	hgsc.bcm.edu	hg19	12	101381339	101381339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ANO4	NM_178826	exon7	c.T520C	p.F174L	AGCAGGTTTCGGA	.	83.0	22.0	108.0	0.0	.	183	.	.	Atlas-SNP
PPP1R36	145376	hgsc.bcm.edu	hg19	14	65053933	65053933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	.	NM_172365	exon10	c.T733G	p.Y245D	TGTACATATGTGG	.	162.0	52.0	186.0	0.0	.	.	.	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	hg19	14	65252487	65252487	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	SPTB_ENST00000542895,caecum,carcinoma,0,2	SPTB	NM_001024858	exon16	c.G3744C	p.K1248N	CTGCACCTTCTCC	.	74.0	24.0	70.0	0.0	.	378	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54307145	54307145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	UNC13C	NM_001080534	exon1	c.G2045C	p.S682T	CAAACAGTCTTTT	.	170.0	51.0	187.0	0.0	.	674	.	.	Atlas-SNP
NARG2	79664	hgsc.bcm.edu	hg19	15	60715904	60715904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	NARG2	NM_024611	exon16	c.A2878G	p.K960E	TGCTTTTGGTTTC	.	164.0	53.0	209.0	0.0	.	82	.	.	Atlas-SNP
IL16	3603	hgsc.bcm.edu	hg19	15	81517759	81517759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	IL16	NM_001172128	exon2	c.G19T	p.A7S	AGCCGCGCTGGAA	.	57.0	4.0	47.0	0.0	.	254	.	.	Atlas-SNP
HBA1	3039	hgsc.bcm.edu	hg19	16	227353	227353	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	HBA1	NM_000558	exon3	c.C372T	p.A124A	GCACGCCTCCCTG	.	258.0	17.0	305.0	0.0	.	2	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30720956	30720956	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	SRCAP	NM_006662	exon7	c.C756T	p.N252N	CCTCAACCAGCCA	.	152.0	45.0	147.0	0.0	.	298	.	.	Atlas-SNP
SNTB2	6645	hgsc.bcm.edu	hg19	16	69333647	69333647	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	SNTB2	NM_006750	exon6	c.C1500A	p.Y500X	TCTATACTTGGAT	.	128.0	56.0	190.0	0.0	.	22	.	.	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84228974	84228974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ADAD2	NM_139174	exon6	c.G1052A	p.C351Y	GCTGCTGTGCTGG	.	63.0	32.0	102.0	0.0	.	46	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577126	7577126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	TP53_ENST00000455263,NS,carcinoma,-1,1	TP53	NM_000546	exon8	c.A812T	p.E271V	CGCACCTCAAAGC	.	78.0	23.0	114.0	0.0	.	33396	.	.	Atlas-SNP
BRIP1	83990	hgsc.bcm.edu	hg19	17	59857746	59857746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	BRIP1	NM_032043	exon13	c.A1811G	p.N604S	TTGCCATTAATAT	.	259.0	84.0	324.0	0.0	.	237	.	.	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	hg19	18	76753069	76753069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	SALL3	NM_171999	exon2	c.A1078G	p.S360G	CTGCCAAGTCCGC	.	60.0	22.0	91.0	0.0	.	162	.	.	Atlas-SNP
ARHGEF1	9138	hgsc.bcm.edu	hg19	19	42409114	42409114	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ARHGEF1	NM_199002	exon23	c.C2220T	p.F740F	AGCCTTCTACGTC	.	62.0	18.0	62.0	0.0	.	95	.	.	Atlas-SNP
ZSWIM1	90204	hgsc.bcm.edu	hg19	20	44511555	44511555	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	ZSWIM1	NM_080603	exon2	c.T324A	p.L108L	TCATCTTGCCCGA	.	177.0	56.0	184.0	0.0	.	35	.	.	Atlas-SNP
SLC7A4	6545	hgsc.bcm.edu	hg19	22	21384617	21384617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	SLC7A4	NM_004173	exon3	c.C1006T	p.L336F	AGAGGAGGCTGAG	.	175.0	23.0	215.0	0.0	.	50	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41545769	41545769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	EP300	NM_001429	exon14	c.A2384G	p.Q795R	AGGCACAAATGTC	.	73.0	27.0	78.0	0.0	.	367	.	.	Atlas-SNP
MAOB	4129	hgsc.bcm.edu	hg19	X	43698252	43698252	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	MAOB	NM_000898	exon4	c.142-1G>T	.	TTGGTTCTGTTTT	.	58.0	26.0	87.0	0.0	.	52	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6579	6579	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	.	ENST00000361624	exon1	c.G676A	p.G226X	GGAGGAGGAGACC	.	22.0	17.0	20.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12360	12360	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	.	ENST00000361567	exon1	c.C24T	p.T8T	TATAACCACCCTA	.	19.0	13.0	28.0	0.0	.	.	.	.	Atlas-SNP
MYO9B	4650	hgsc.bcm.edu	hg19	19	17322910	17322911	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	MYO9B	NM_004145	exon40	c.6264_6265del	p.2088_2089del	.	.	170.0	50.0	162.0	0.0	.	264	.	.	Atlas-INDEL
KCNN4	3783	hgsc.bcm.edu	hg19	19	44273601	44273601	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	KCNN4	NM_002250	exon6	c.1043delT	p.I348fs	.	.	38.0	11.0	70.0	0.0	.	37	.	.	Atlas-INDEL
VPRBP	9730	hgsc.bcm.edu	hg19	3	51475613	51475613	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAD3-01A-11D-A40R-10	TCGA-DD-AAD3-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	de0a6b4c-0602-40a8-baa1-05b412f17031	ade9b5f7-213a-40a5-9ccd-45c50c735824	.	VPRBP	NM_014703	exon8	c.815delA	p.Q272fs	.	.	139.0	42.0	173.0	0.0	.	107	.	.	Atlas-INDEL