Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ZBTB17	7709	hgsc.bcm.edu	hg19	1	16271291	16271291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ZBTB17	NM_003443	exon8	c.A971C	p.H324P	CGGATGTGCCGCT	.	53.0	6.0	72.0	0.0	.	45	.	.	Atlas-SNP
ZMYM6NB	100506144	hgsc.bcm.edu	hg19	1	35447692	35447692	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	.	NM_001195156	exon3	c.A318G	p.K106K	TGACTCTTTCAGA	.	67.0	32.0	89.0	0.0	.	.	.	.	Atlas-SNP
AGO3	192669	hgsc.bcm.edu	hg19	1	36479616	36479616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	.	NM_024852	exon11	c.C1373A	p.A458D	GTTTTGCCACACA	.	318.0	137.0	396.0	0.0	.	.	.	.	Atlas-SNP
PCSK9	255738	hgsc.bcm.edu	hg19	1	55527163	55527163	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PCSK9	NM_174936	exon11	c.C1797G	p.S599S	CGCTTCCTGCTGC	.	304.0	113.0	387.0	0.0	.	76	.	.	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	hg19	1	91781372	91781372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	HFM1,caecum,carcinoma,0,1	HFM1	NM_001017975	exon28	c.C3140T	p.T1047M	ACTTACGTAATCT	.	115.0	47.0	154.0	0.0	.	188	.	.	Atlas-SNP
SLC44A3	126969	hgsc.bcm.edu	hg19	1	95310943	95310943	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SLC44A3	NM_001114106	exon9	c.A995T	p.Q332L	TGTTCCAGCCACT	.	47.0	14.0	49.0	0.0	.	109	.	.	Atlas-SNP
STXBP3	6814	hgsc.bcm.edu	hg19	1	109321972	109321972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	STXBP3	NM_007269	exon9	c.A749G	p.H250R	TCCTGCATGAACT	.	69.0	24.0	123.0	0.0	.	44	.	.	Atlas-SNP
HIPK1	204851	hgsc.bcm.edu	hg19	1	114514596	114514596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	HIPK1,NS,carcinoma,0,1	HIPK1	NM_152696	exon15	c.G3164A	p.C1055Y	GCTACTGCCTTCT	.	127.0	32.0	123.0	0.0	.	195	.	.	Atlas-SNP
SYCP1	6847	hgsc.bcm.edu	hg19	1	115487586	115487586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SYCP1	NM_003176	exon25	c.C2137T	p.L713F	GTAGCACTTATGG	.	499.0	31.0	468.0	0.0	.	149	.	.	Atlas-SNP
ZNF687	57592	hgsc.bcm.edu	hg19	1	151261604	151261604	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ZNF687	NM_020832	exon4	c.G2328A	p.V776V	GGGTGTGAACTCC	.	137.0	7.0	78.0	0.0	.	94	.	.	Atlas-SNP
OR10R2	343406	hgsc.bcm.edu	hg19	1	158450591	158450591	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	OR10R2	NM_001004472	exon1	c.G924C	p.M308I	CCCCATGGTTTAT	.	298.0	57.0	227.0	0.0	.	81	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158622440	158622440	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SPTA1	NM_003126	exon23	c.C3192T	p.Y1064Y	GGAGCGGTATCTG	.	99.0	17.0	102.0	0.0	.	720	.	.	Atlas-SNP
CD55	1604	hgsc.bcm.edu	hg19	1	207498067	207498067	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	CD55	NM_001114752	exon3	c.A450G	p.K150K	TTTAAAATGGTCC	.	179.0	108.0	115.0	0.0	.	55	.	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208202219	208202219	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PLXNA2	NM_025179	exon30	c.G5394T	p.L1798L	ATAGAGCAGCTTG	.	131.0	33.0	106.0	0.0	.	178	.	.	Atlas-SNP
FAM71A	149647	hgsc.bcm.edu	hg19	1	212798986	212798986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	FAM71A	NM_153606	exon1	c.A767G	p.N256S	TGCTCAATGCATC	.	87.0	17.0	53.0	0.0	.	87	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216420462	216420462	+	Silent	SNP	G	G	A	rs61747101	alternate_allele	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	USH2A	NM_007123	exon13	c.C2274T	p.F758F	ATTGCAGAATTTG	.	138.0	11.0	125.0	0.0	.	1168	.	G|0.024;C|0.976	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	hg19	1	220160734	220160734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	EPRS	NM_004446	exon20	c.A2788G	p.I930V	CAGCTATATCTAC	.	79.0	13.0	67.0	0.0	.	140	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245809448	245809448	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	KIF26B	NM_018012	exon10	c.T2124A	p.H708Q	CCTGCATCTCATT	.	85.0	6.0	72.0	0.0	.	343	.	.	Atlas-SNP
OR2T3	343173	hgsc.bcm.edu	hg19	1	248636988	248636988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	OR2T3	NM_001005495	exon1	c.G337A	p.A113T	ACCCTGGCTGGAG	.	525.0	91.0	374.0	0.0	.	79	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1480955	1480955	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	TPO	NM_175719	exon8	c.G917C	p.G306A	TCTTTGGGAACCT	.	708.0	123.0	698.0	0.0	.	224	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11750992	11750992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	GREB1	NM_014668	exon18	c.A2845T	p.M949L	GGGCTCATGGTCC	.	235.0	10.0	205.0	0.0	.	308	.	.	Atlas-SNP
LPIN1	23175	hgsc.bcm.edu	hg19	2	11911614	11911614	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	LPIN1,colon,carcinoma,+1,1	LPIN1	NM_001261428	exon5	c.G552A	p.T184T	CAGCACGCCAGCC	.	165.0	43.0	141.0	0.0	.	99	.	.	Atlas-SNP
WDR35	57539	hgsc.bcm.edu	hg19	2	20135328	20135328	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	WDR35	NM_001006657	exon22	c.C2484G	p.N828K	TTCCTGGTTCCGT	.	72.0	19.0	79.0	0.0	.	92	.	.	Atlas-SNP
KLHL29	114818	hgsc.bcm.edu	hg19	2	23865474	23865474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	KLHL29	NM_052920	exon5	c.C694A	p.P232T	CCTCAGCCCCTGG	.	121.0	24.0	126.0	0.0	.	47	.	.	Atlas-SNP
CCDC85A	114800	hgsc.bcm.edu	hg19	2	56419881	56419881	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	CCDC85A	NM_001080433	exon2	c.C546A	p.G182G	CGCAGGCAGCCGC	.	190.0	56.0	202.0	0.0	.	70	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179637884	179637884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	TTN	NM_001267550	exon33	c.A7807C	p.T2603P	AAAATGTGTATTT	.	178.0	118.0	178.0	0.0	.	18412	.	.	Atlas-SNP
SPATS2L	26010	hgsc.bcm.edu	hg19	2	201305388	201305388	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SPATS2L	NM_001100423	exon8	c.A669T	p.K223N	TGAGAAATCAGTG	.	102.0	22.0	100.0	0.0	.	88	.	.	Atlas-SNP
STK11IP	114790	hgsc.bcm.edu	hg19	2	220480870	220480870	+	Silent	SNP	C	C	T	rs373252328		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	STK11IP	NM_052902	exon25	c.C3255T	p.I1085I	TTCCATCGGACTC	.	121.0	28.0	121.0	0.0	.	152	.	.	Atlas-SNP
UBE2F	140739	hgsc.bcm.edu	hg19	2	238925260	238925260	+	Silent	SNP	T	T	C	rs139771082		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	UBE2F	NM_080678	exon5	c.T267C	p.D89D	TCCCGATGCGTAC	.	79.0	19.0	94.0	0.0	.	11	.	T|1.000;C|0.000	Atlas-SNP
IL17RE	132014	hgsc.bcm.edu	hg19	3	9955676	9955676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	IL17RE	NM_153483	exon14	c.A1384G	p.I462V	CTCATCATTCCCT	.	122.0	63.0	95.0	0.0	.	62	.	.	Atlas-SNP
DYNC1LI1	51143	hgsc.bcm.edu	hg19	3	32570073	32570073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	DYNC1LI1	NM_016141	exon12	c.G1327T	p.V443F	CCAGAACGCCTTC	.	146.0	91.0	130.0	0.0	.	23	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	C	rs121913396	bycluster	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	CTNNB1,gallbladder,other,+1,128	CTNNB1	NM_001098209	exon3	c.A95C	p.D32A	ACCTGGACTCTGG	.	161.0	10.0	148.0	1.0	.	4904	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A	rs121913400	bycluster	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	CTNNB1,gallbladder,other,0,359	CTNNB1	NM_001098209	exon3	c.C98A	p.S33Y	TGGACTCTGGAAT	.	160.0	22.0	148.0	0.0	.	4904	.	.	Atlas-SNP
MST1R	4486	hgsc.bcm.edu	hg19	3	49928959	49928959	+	Missense_Mutation	SNP	C	C	T	rs140250708		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	MST1R	NM_002447	exon16	c.G3407A	p.R1136H	AGGCCACGCATGA	.	228.0	12.0	187.0	0.0	.	205	.	C|1.000;T|0.000	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62648033	62648033	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	CADPS	NM_003716	exon4	c.C925T	p.R309X	GCTCTCGTCTGAT	.	65.0	34.0	61.0	0.0	.	387	.	.	Atlas-SNP
HHLA2	11148	hgsc.bcm.edu	hg19	3	108076940	108076940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	HHLA2	NM_007072	exon6	c.G935A	p.S312N	CAGACAGTGGGGA	.	89.0	50.0	118.0	0.0	.	95	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121410144	121410144	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	GOLGB1	NM_001256486	exon14	c.A8067G	p.L2689L	ATGCTTTAATTCT	.	75.0	24.0	72.0	0.0	.	319	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121417563	121417563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	GOLGB1	NM_001256486	exon13	c.A1807G	p.M603V	GTTTCATTTCTTT	.	126.0	34.0	139.0	0.0	.	319	.	.	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	hg19	3	130098644	130098644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	COL6A5	NM_153264	exon4	c.G1051T	p.D351Y	CCATCAGATGATG	.	227.0	64.0	184.0	0.0	.	205	.	.	Atlas-SNP
COPB2	9276	hgsc.bcm.edu	hg19	3	139096979	139096979	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	COPB2	NM_004766	exon5	c.A408G	p.Q136Q	AAACACTTGTGAG	.	142.0	28.0	128.0	0.0	.	80	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	hg19	3	164783108	164783108	+	Missense_Mutation	SNP	G	G	A	rs200745562		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	SI,colon,carcinoma,0,2	SI	NM_001041	exon7	c.C748T	p.R250C	CATGACGAAATCT	.	239.0	88.0	291.0	0.0	.	500	.	.	Atlas-SNP
SPATA16	83893	hgsc.bcm.edu	hg19	3	172834953	172834953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SPATA16	NM_031955	exon2	c.A569G	p.K190R	TATTTCTTTTGTC	.	117.0	63.0	112.0	0.0	.	111	.	.	Atlas-SNP
CC2D2A	57545	hgsc.bcm.edu	hg19	4	15589442	15589442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.,2	CC2D2A	NM_001080522	exon33	c.T4069C	p.F1357L	CAGCAATTTCTTG	.	33.0	15.0	37.0	0.0	.	158	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	hg19	4	30921954	30921954	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PCDH7	NM_032457	exon2	c.G3354T	p.P1118P	CACGCCGGATGGC	.	82.0	31.0	90.0	0.0	.	215	.	.	Atlas-SNP
PPAT	5471	hgsc.bcm.edu	hg19	4	57261616	57261616	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PPAT	NM_002703	exon11	c.A1456C	p.M486L	GGATCATAATATC	.	192.0	66.0	275.0	0.0	.	41	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62845284	62845284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	LPHN3	NM_015236	exon15	c.A2605G	p.S869G	CAGCACAGTGATG	.	104.0	39.0	124.0	0.0	.	800	.	.	Atlas-SNP
ARHGAP24	83478	hgsc.bcm.edu	hg19	4	86916340	86916340	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ARHGAP24	NM_001025616	exon9	c.G1533C	p.L511L	GACCCTGAGGGAT	.	100.0	42.0	135.0	0.0	.	116	.	.	Atlas-SNP
GAB1	2549	hgsc.bcm.edu	hg19	4	144359564	144359564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	GAB1	NM_207123	exon4	c.A1006T	p.T336S	CTAGACACTATTC	.	79.0	44.0	102.0	0.0	.	80	.	.	Atlas-SNP
FAM160A1	729830	hgsc.bcm.edu	hg19	4	152571280	152571280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	FAM160A1	NM_001109977	exon11	c.A2087G	p.E696G	AGGAGGAGTGGAA	.	62.0	4.0	98.0	0.0	.	60	.	.	Atlas-SNP
MAN2A1	4124	hgsc.bcm.edu	hg19	5	109065183	109065183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	MAN2A1	NM_002372	exon4	c.A676G	p.I226V	GATATTATAGATA	.	108.0	32.0	97.0	0.0	.	136	.	.	Atlas-SNP
KCNN2	3781	hgsc.bcm.edu	hg19	5	113798873	113798873	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	KCNN2	NM_021614	exon4	c.C1129G	p.L377V	TGCTTACTTACTG	.	98.0	19.0	106.0	0.0	.	144	.	.	Atlas-SNP
PSD2	84249	hgsc.bcm.edu	hg19	5	139218319	139218319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PSD2	NM_032289	exon13	c.C1930T	p.R644W	TTCTGTCGGCCCC	.	161.0	32.0	134.0	0.0	.	88	.	.	Atlas-SNP
PCDHGA9	56107	hgsc.bcm.edu	hg19	5	140783284	140783284	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PCDHGA9	NM_032089	exon1	c.G765T	p.V255V	GAACGTGCCCCCA	.	172.0	110.0	170.0	0.0	.	110	.	.	Atlas-SNP
WWC1	23286	hgsc.bcm.edu	hg19	5	167826554	167826554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	WWC1	NM_015238	exon5	c.G572A	p.G191D	AGCGTGGCTTTCA	.	246.0	52.0	251.0	0.0	.	98	.	.	Atlas-SNP
VWA7	80737	hgsc.bcm.edu	hg19	6	31736938	31736938	+	Nonsense_Mutation	SNP	G	G	A	rs369133546		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	.	NM_025258	exon10	c.C1360T	p.R454X	GAGCTCGACCCTG	.	86.0	17.0	58.0	0.0	.	.	.	.	Atlas-SNP
GUCA1A	2978	hgsc.bcm.edu	hg19	6	42147077	42147077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	GUCA1A	NM_000409	exon6	c.G542A	p.R181H	TCGTGCGCAGGCT	.	329.0	21.0	216.0	0.0	.	18	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	73102465	73102465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	RIMS1	NM_014989	exon31	c.G4571A	p.G1524E	GATTGGGACCAGC	.	87.0	6.0	118.0	0.0	.	278	.	.	Atlas-SNP
ENPP3	5169	hgsc.bcm.edu	hg19	6	131996239	131996239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ENPP3	NM_005021	exon9	c.A782G	p.Y261C	CAATGTATCAAGG	.	81.0	22.0	121.0	0.0	.	117	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152749436	152749436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SYNE1	NM_033071	exon37	c.A4901G	p.Q1634R	GCCTCCTGAACAC	.	26.0	7.0	35.0	0.0	.	3227	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152804308	152804308	+	Missense_Mutation	SNP	G	G	T	rs150409035	bycluster;alternate_allele	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SYNE1	NM_033071	exon14	c.C1283A	p.A428E	ACCTCCGCTCTGT	.	60.0	25.0	68.0	0.0	.	3227	.	G|1.000;A|0.000	Atlas-SNP
PDE10A	10846	hgsc.bcm.edu	hg19	6	165844911	165844911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PDE10A	NM_001130690	exon8	c.A743G	p.Q248R	CTCACCTGCACCT	.	216.0	53.0	324.0	0.0	.	154	.	.	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	hg19	7	36445824	36445824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ANLN	NM_018685	exon4	c.G522A	p.M174I	ACCAATGCCATCA	.	103.0	40.0	72.0	0.0	.	101	.	.	Atlas-SNP
ZNF273	10793	hgsc.bcm.edu	hg19	7	64363699	64363699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ZNF273	NM_021148	exon1	c.T4C	p.S2P	TCTATGTCCTCTG	.	54.0	8.0	39.0	0.0	.	45	.	.	Atlas-SNP
NPTX2	4885	hgsc.bcm.edu	hg19	7	98254264	98254264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	NPTX2	NM_002523	exon3	c.T674C	p.F225S	ATGCGTTCAAGGT	.	76.0	17.0	49.0	0.0	.	45	.	.	Atlas-SNP
GIGYF1	64599	hgsc.bcm.edu	hg19	7	100284400	100284400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	GIGYF1	NM_022574	exon7	c.A566G	p.E189G	GCGTGCTCCTTCC	.	211.0	14.0	137.0	0.0	.	113	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103126731	103126731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	RELN	NM_173054	exon61	c.C9896T	p.A3299V	TAGGGGGCCAGCT	.	235.0	39.0	155.0	0.0	.	593	.	.	Atlas-SNP
LAMB1	3912	hgsc.bcm.edu	hg19	7	107569615	107569615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	LAMB1,NS,carcinoma,0,1	LAMB1	NM_002291	exon31	c.T4781C	p.M1594T	TTTACCATATCTG	.	107.0	22.0	74.0	1.0	.	185	.	.	Atlas-SNP
AASS	10157	hgsc.bcm.edu	hg19	7	121716604	121716604	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	AASS	NM_005763	exon24	c.T2720G	p.I907R	TCCAATATTGGTC	.	124.0	24.0	87.0	0.0	.	123	.	.	Atlas-SNP
AGBL3	340351	hgsc.bcm.edu	hg19	7	134719335	134719335	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	AGBL3	NM_178563	exon7	c.G993A	p.T331T	CCACACGCTTGCT	.	114.0	14.0	107.0	0.0	.	45	.	.	Atlas-SNP
KCNH2	3757	hgsc.bcm.edu	hg19	7	150647095	150647095	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	KCNH2	NM_172056	exon9	c.C2559T	p.A853A	CTCCATGGCCCCG	.	148.0	6.0	86.0	0.0	.	157	.	.	Atlas-SNP
UBE3C	9690	hgsc.bcm.edu	hg19	7	156974230	156974230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	UBE3C	NM_014671	exon7	c.A635G	p.Y212C	CTCTATATTTGTT	.	184.0	29.0	107.0	0.0	.	124	.	.	Atlas-SNP
PCM1	5108	hgsc.bcm.edu	hg19	8	17823507	17823507	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PCM1	NM_006197	exon19	c.2856-1G>T	.	GTGTTAGGTGGAA	.	89.0	28.0	125.0	0.0	.	120	.	.	Atlas-SNP
WRN	7486	hgsc.bcm.edu	hg19	8	31004928	31004928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	WRN	NM_000553	exon30	c.A3508G	p.K1170E	GCCAATAAAATGG	.	136.0	39.0	235.0	0.0	.	116	.	.	Atlas-SNP
C8orf86	389649	hgsc.bcm.edu	hg19	8	38386128	38386128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	C8orf86	NM_207412	exon1	c.C28T	p.P10S	CAGCTGGGAGGAG	.	45.0	13.0	37.0	0.0	.	17	.	.	Atlas-SNP
PRKDC	5591	hgsc.bcm.edu	hg19	8	48767935	48767935	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PRKDC	NM_001081640	exon51	c.6609-1G>A	.	GACCCCCTGAAAA	.	58.0	25.0	82.0	0.0	.	394	.	.	Atlas-SNP
RBM12B	389677	hgsc.bcm.edu	hg19	8	94748356	94748356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	RBM12B	NM_203390	exon3	c.C283T	p.R95C	CTGGACGCCCTCT	.	149.0	9.0	99.0	0.0	.	78	.	.	Atlas-SNP
ZNF16	7564	hgsc.bcm.edu	hg19	8	146156959	146156959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ZNF16	NM_006958	exon3	c.A1214G	p.Y405C	CACTCATAAGGCT	.	173.0	44.0	140.0	0.0	.	80	.	.	Atlas-SNP
PDCD1LG2	80380	hgsc.bcm.edu	hg19	9	5535017	5535017	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PDCD1LG2	NM_025239	exon3	c.T328A	p.W110R	GTCGCCTGGGACT	.	27.0	13.0	35.0	0.0	.	16	.	.	Atlas-SNP
CNTLN	54875	hgsc.bcm.edu	hg19	9	17394652	17394652	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	CNTLN	NM_017738	exon15	c.G2200C	p.E734Q	CAACAAGAAGATA	.	263.0	19.0	283.0	0.0	.	128	.	.	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	hg19	9	35717322	35717322	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	TLN1	NM_006289	exon19	c.A2279T	p.D760V	TGCCCATCCTCTG	.	45.0	22.0	57.0	0.0	.	185	.	.	Atlas-SNP
FAM221B	392307	hgsc.bcm.edu	hg19	9	35819298	35819298	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	FAM221B	NM_001012446	exon5	c.A947C	p.K316T	CGTCTCTTGAGCC	.	125.0	18.0	118.0	0.0	.	38	.	.	Atlas-SNP
GKAP1	80318	hgsc.bcm.edu	hg19	9	86421241	86421241	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	GKAP1	NM_025211	exon3	c.A192G	p.E64E	TTGCTGTTCCTTC	.	35.0	11.0	37.0	0.0	.	27	.	.	Atlas-SNP
ROR2	4920	hgsc.bcm.edu	hg19	9	94486330	94486330	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ROR2	NM_004560	exon9	c.C2446T	p.Q816X	AGAGCTGCGGCGG	.	33.0	12.0	39.0	0.0	.	167	.	.	Atlas-SNP
DNAJC25	548645	hgsc.bcm.edu	hg19	9	114411923	114411923	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	DNAJC25	NM_001015882	exon3	c.A680C	p.K227T	TTATAAAAAGTAA	.	170.0	77.0	182.0	0.0	.	20	.	.	Atlas-SNP
SLC46A2	57864	hgsc.bcm.edu	hg19	9	115652456	115652456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SLC46A2	NM_033051	exon1	c.G506A	p.R169H	ACAGAGCGGCGGC	.	123.0	8.0	137.0	0.0	.	30	.	.	Atlas-SNP
CERCAM	51148	hgsc.bcm.edu	hg19	9	131186523	131186523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	CERCAM	NM_016174	exon4	c.C533A	p.S178Y	ACTACTCCAACTT	.	91.0	30.0	96.0	0.0	.	104	.	.	Atlas-SNP
FAM73B	84895	hgsc.bcm.edu	hg19	9	131832663	131832663	+	Silent	SNP	C	C	T	rs375061896		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	FAM73B	NM_032809	exon16	c.C1713T	p.P571P	GGTGCCCGCGGCC	.	134.0	12.0	155.0	0.0	.	37	.	.	Atlas-SNP
NOTCH1	4851	hgsc.bcm.edu	hg19	9	139395186	139395186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	NOTCH1_ENST00000277541,NS,carcinoma,0,2	NOTCH1	NM_017617	exon31	c.G5752A	p.A1918T	GGCTGGCGCCCTG	.	69.0	18.0	52.0	0.0	.	1980	.	.	Atlas-SNP
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27342285	27342285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ANKRD26	NM_014915	exon16	c.G1599T	p.E533D	TTCTTGCTCTTCT	.	70.0	22.0	71.0	0.0	.	179	.	.	Atlas-SNP
NOC3L	64318	hgsc.bcm.edu	hg19	10	96116942	96116942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	NOC3L	NM_022451	exon4	c.G497A	p.R166K	TTCTCCCTAGTCT	.	113.0	21.0	101.0	0.0	.	67	.	.	Atlas-SNP
NEURL	9148	hgsc.bcm.edu	hg19	10	105344941	105344941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	NEURL	NM_004210	exon4	c.T1298A	p.L433H	GGATGCTCTTCGG	.	48.0	5.0	46.0	0.0	.	38	.	.	Atlas-SNP
PNLIP	5406	hgsc.bcm.edu	hg19	10	118306864	118306864	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PNLIP	NM_000936	exon3	c.A105T	p.G35G	GTCAGGAATTACG	.	128.0	39.0	123.0	0.0	.	166	.	.	Atlas-SNP
KCNA4	3739	hgsc.bcm.edu	hg19	11	30033588	30033588	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	KCNA4	NM_002233	exon2	c.A638T	p.D213V	AAAGGGTCAAAGT	.	51.0	35.0	62.0	0.0	.	158	.	.	Atlas-SNP
WT1	7490	hgsc.bcm.edu	hg19	11	32450064	32450064	+	Missense_Mutation	SNP	T	T	G	rs142653301	alternate_allele	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	WT1	NM_024424	exon2	c.A748C	p.M250L	GGCCCATGGGATC	.	72.0	28.0	81.0	0.0	.	744	.	T|1.000;C|0.000	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33572682	33572682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	.	NM_012194	exon4	c.G2707A	p.G903S	ATGCTGGGTGTGT	.	119.0	98.0	129.0	0.0	.	.	.	.	Atlas-SNP
RPS6KB2	6199	hgsc.bcm.edu	hg19	11	67200655	67200655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	RPS6KB2	NM_003952	exon9	c.G766A	p.G256R	AGCCTGGGGGCCC	.	39.0	13.0	76.0	0.0	.	92	.	.	Atlas-SNP
XRRA1	143570	hgsc.bcm.edu	hg19	11	74563036	74563036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	XRRA1,NS,carcinoma,0,1	XRRA1	NM_182969	exon13	c.G1238A	p.R413Q	ATACCTCGTGTAT	.	87.0	36.0	107.0	0.0	.	46	.	.	Atlas-SNP
DLG2	1740	hgsc.bcm.edu	hg19	11	83177808	83177808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	DLG2	NM_001142699	exon26	c.T2672C	p.V891A	TGGGCAACTTGTA	.	66.0	21.0	78.0	0.0	.	448	.	.	Atlas-SNP
C11orf87	399947	hgsc.bcm.edu	hg19	11	109294946	109294946	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	C11orf87	NM_207645	exon2	c.T587A	p.L196Q	TGGTACTGTCCTG	.	57.0	20.0	86.0	0.0	.	37	.	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	hg19	11	121016430	121016430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	TECTA	NM_005422	exon11	c.C3710T	p.T1237I	ACAGCACCTATGG	.	179.0	57.0	243.0	0.0	.	329	.	.	Atlas-SNP
OR10S1	219873	hgsc.bcm.edu	hg19	11	123847992	123847992	+	Missense_Mutation	SNP	C	C	A	rs199683540	bycluster;alternate_allele	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	OR10S1	NM_001004474	exon1	c.G407T	p.R136L	AGATAGCGGTCAT	.	60.0	52.0	74.0	0.0	.	78	.	.	Atlas-SNP
FAM90A1	55138	hgsc.bcm.edu	hg19	12	8376148	8376148	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	FAM90A1	NM_018088	exon6	c.A329T	p.Q110L	GGGTCTTGTGGCC	.	47.0	18.0	35.0	0.0	.	68	.	.	Atlas-SNP
GUCY2C	2984	hgsc.bcm.edu	hg19	12	14794100	14794100	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	GUCY2C	NM_004963	exon18	c.G1984C	p.D662H	ACACATCTCCTTT	.	80.0	8.0	87.0	0.0	.	126	.	.	Atlas-SNP
DDX11	1663	hgsc.bcm.edu	hg19	12	31247737	31247737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	DDX11	NM_030653	exon14	c.A1463G	p.D488G	AGATCGACAACAT	.	268.0	133.0	241.0	1.0	.	188	.	.	Atlas-SNP
INHBE	83729	hgsc.bcm.edu	hg19	12	57850290	57850290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	INHBE	NM_031479	exon2	c.C712A	p.P238T	AGGACCCCCACCT	.	132.0	6.0	120.0	0.0	.	38	.	.	Atlas-SNP
MARS	4141	hgsc.bcm.edu	hg19	12	57910274	57910274	+	Silent	SNP	G	G	A	rs373439522		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	MARS	NM_004990	exon21	c.G2613A	p.A871A	TGCTGCGGAGGTG	.	302.0	76.0	244.0	0.0	.	84	.	.	Atlas-SNP
TMEM119	338773	hgsc.bcm.edu	hg19	12	108985575	108985575	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	TMEM119	NM_181724	exon2	c.C585T	p.D195D	GGCTCCGTCCCCA	.	50.0	26.0	47.0	0.0	.	31	.	.	Atlas-SNP
CDK8	1024	hgsc.bcm.edu	hg19	13	26911779	26911779	+	Silent	SNP	A	A	T	rs371097459	alternate_allele	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	CDK8	NM_001260	exon2	c.A204T	p.A68A	AATAGCAGTAAGT	.	132.0	109.0	228.0	0.0	.	61	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36046629	36046629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	NBEA,colon,carcinoma,0,1	NBEA	NM_015678	exon41	c.G6541A	p.E2181K	TACTTCGAGGTAG	.	69.0	22.0	89.0	0.0	.	340	.	.	Atlas-SNP
EBPL	84650	hgsc.bcm.edu	hg19	13	50265487	50265487	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	EBPL	NM_032565	exon1	c.G74C	p.G25A	GCGCAGCCCGCCG	.	27.0	6.0	41.0	0.0	.	44	.	.	Atlas-SNP
RNASEH2B	79621	hgsc.bcm.edu	hg19	13	51504867	51504867	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	RNASEH2B	NM_024570	exon4	c.T293G	p.L98R	TGCTTCTCCACTA	.	51.0	7.0	59.0	0.0	.	26	.	.	Atlas-SNP
UGGT2	55757	hgsc.bcm.edu	hg19	13	96579477	96579477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	UGGT2	NM_020121	exon18	c.A2091G	p.I697M	TGTAGATATTAAA	.	203.0	159.0	276.0	0.0	.	127	.	.	Atlas-SNP
PARP2	10038	hgsc.bcm.edu	hg19	14	20820473	20820473	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PARP2	NM_005484	exon7	c.T606C	p.D202D	ATATGATATGCTA	.	138.0	29.0	139.0	0.0	.	92	.	.	Atlas-SNP
DHRS4L1	728635	hgsc.bcm.edu	hg19	14	24517955	24517955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	.	NM_001082488	exon8	c.G610A	p.A204T	GAGCTGGCCCCAA	.	771.0	153.0	647.0	0.0	.	.	.	.	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31647288	31647288	+	Missense_Mutation	SNP	G	G	A	rs377423641	alternate_allele	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	HECTD1	NM_015382	exon3	c.C313T	p.R105C	CCAAACGATTACA	.	143.0	7.0	122.0	0.0	.	159	.	.	Atlas-SNP
SIX6	4990	hgsc.bcm.edu	hg19	14	60976223	60976223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SIX6	NM_007374	exon1	c.C107T	p.S36L	TCTGGTCGCTGCC	.	1321.0	397.0	1246.0	2.0	.	27	.	.	Atlas-SNP
SIX4	51804	hgsc.bcm.edu	hg19	14	61180534	61180534	+	Missense_Mutation	SNP	G	G	A	rs374417781		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SIX4	NM_017420	exon3	c.C1937T	p.P646L	GCCACCGGTGCAG	.	97.0	4.0	107.0	0.0	.	69	.	.	Atlas-SNP
WDR89	112840	hgsc.bcm.edu	hg19	14	64065604	64065604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	WDR89	NM_080666	exon3	c.A1057G	p.I353V	TCTCTATAGCTCC	.	82.0	10.0	68.0	0.0	.	22	.	.	Atlas-SNP
BATF	10538	hgsc.bcm.edu	hg19	14	75989066	75989066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	BATF	NM_006399	exon1	c.G41A	p.R14H	TCAGCCGCTCTCC	.	60.0	6.0	63.0	0.0	.	12	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	hg19	14	79746796	79746796	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	NRXN3	NM_138970	exon1	c.G162A	p.Q54Q	CTCTCAGCACGAG	.	75.0	40.0	87.0	0.0	.	342	.	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	hg19	15	50884532	50884532	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	TRPM7	NM_017672	exon26	c.C3900T	p.S1300S	AAGAGAGGAGCTA	.	156.0	38.0	119.0	0.0	.	145	.	.	Atlas-SNP
ADAM10	102	hgsc.bcm.edu	hg19	15	58936148	58936148	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ADAM10	NM_001110	exon7	c.A765T	p.T255T	GTAAATTGTATCA	.	99.0	10.0	98.0	0.0	.	59	.	.	Atlas-SNP
SLC24A1	9187	hgsc.bcm.edu	hg19	15	65943145	65943145	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SLC24A1	NM_004727	exon7	c.G2658A	p.E886E	GGAGGAGGAAGAG	.	125.0	5.0	100.0	0.0	.	58	.	.	Atlas-SNP
GOLGA6B	55889	hgsc.bcm.edu	hg19	15	72955008	72955008	+	Missense_Mutation	SNP	G	G	C	rs71400917		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	GOLGA6B,NS,malignant_melanoma,0,1	GOLGA6B	NM_018652	exon11	c.G1263C	p.E421D	GGAGGAGAGGCTA	.	107.0	5.0	88.0	0.0	.	30	.	G|1.000;|0.000	Atlas-SNP
NPTN	27020	hgsc.bcm.edu	hg19	15	73889554	73889554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	NPTN	NM_001161363	exon2	c.G248T	p.R83L	CGCTTCCGAGCAC	.	213.0	47.0	155.0	0.0	.	35	.	.	Atlas-SNP
ADAMTS7	11173	hgsc.bcm.edu	hg19	15	79090369	79090369	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ADAMTS7	NM_014272	exon3	c.T543C	p.H181H	CACCACATGGGGC	.	66.0	16.0	41.0	0.0	.	142	.	.	Atlas-SNP
SCNN1G	6340	hgsc.bcm.edu	hg19	16	23200752	23200752	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SCNN1G	NM_001039	exon3	c.G378A	p.K126K	CCTGAAGTCCCTG	.	78.0	68.0	104.0	0.0	.	82	.	.	Atlas-SNP
SCNN1G	6340	hgsc.bcm.edu	hg19	16	23223412	23223412	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SCNN1G	NM_001039	exon8	c.T1234A	p.Y412N	GCCCAGTACAGCC	.	49.0	42.0	67.0	0.0	.	82	.	.	Atlas-SNP
CDH11	1009	hgsc.bcm.edu	hg19	16	65005962	65005962	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	CDH11,NS,carcinoma,0,1	CDH11	NM_001797	exon10	c.C1396A	p.R466R	GATGCCGATTGTC	.	93.0	71.0	158.0	0.0	.	260	.	.	Atlas-SNP
DYNC1LI2	1783	hgsc.bcm.edu	hg19	16	66776358	66776358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	DYNC1LI2	NM_006141	exon4	c.G512A	p.R171K	AGCTCCCTCATTT	.	53.0	21.0	76.0	0.0	.	37	.	.	Atlas-SNP
AARS	16	hgsc.bcm.edu	hg19	16	70304225	70304225	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	AARS	NM_001605	exon6	c.G690T	p.L230L	AGGTTTCAGAATG	.	90.0	69.0	94.0	0.0	.	62	.	.	Atlas-SNP
SF3B3	23450	hgsc.bcm.edu	hg19	16	70588395	70588395	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SF3B3	NM_012426	exon12	c.A1449G	p.L483L	CACCCTAGTGTTG	.	84.0	11.0	100.0	0.0	.	99	.	.	Atlas-SNP
KLHL36	79786	hgsc.bcm.edu	hg19	16	84691009	84691009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	KLHL36	NM_024731	exon3	c.G596A	p.S199N	TGAGCAGCAGCGA	.	24.0	11.0	47.0	0.0	.	51	.	.	Atlas-SNP
MYO1C	4641	hgsc.bcm.edu	hg19	17	1371776	1371776	+	Silent	SNP	G	G	C	rs374091489	alternate_allele	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	MYO1C	NM_001080779	exon26	c.C2625G	p.A875A	AGCCACGGCCTTC	.	60.0	8.0	50.0	0.0	.	57	.	.	Atlas-SNP
SGSM2	9905	hgsc.bcm.edu	hg19	17	2276666	2276666	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SGSM2	NM_014853	exon17	c.A1959G	p.A653A	GTTGGCAGAGTGG	.	56.0	17.0	53.0	0.0	.	60	.	.	Atlas-SNP
MYH4	4622	hgsc.bcm.edu	hg19	17	10363528	10363528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	MYH4	NM_017533	exon13	c.G1258C	p.V420L	GCTGCACAGTCTG	.	124.0	9.0	134.0	0.0	.	349	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27419423	27419423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	MYO18A	NM_078471	exon34	c.A5125G	p.M1709V	CCTCCATTGCTTT	.	43.0	11.0	36.0	0.0	.	217	.	.	Atlas-SNP
GGNBP2	79893	hgsc.bcm.edu	hg19	17	34916707	34916707	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	GGNBP2	NM_024835	exon5	c.T523C	p.L175L	AAACCTTTGGGGT	.	109.0	34.0	123.0	0.0	.	72	.	.	Atlas-SNP
TUBG2	27175	hgsc.bcm.edu	hg19	17	40817531	40817531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	TUBG2	NM_016437	exon7	c.C644T	p.T215I	TTGCCACAGACCG	.	114.0	38.0	140.0	0.0	.	43	.	.	Atlas-SNP
NBR1	4077	hgsc.bcm.edu	hg19	17	41347008	41347008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	NBR1	NM_031862	exon14	c.A1702G	p.I568V	TTGGATATAAACA	.	325.0	22.0	299.0	0.0	.	55	.	.	Atlas-SNP
FMNL1	752	hgsc.bcm.edu	hg19	17	43310645	43310645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	FMNL1	NM_005892	exon4	c.C382A	p.L128M	ACCTCCCTGAGGA	.	72.0	24.0	83.0	0.0	.	78	.	.	Atlas-SNP
TEX2	55852	hgsc.bcm.edu	hg19	17	62291064	62291064	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	TEX2	NM_018469	exon2	c.A514T	p.I172F	AGAGGATGGGAGA	.	94.0	9.0	76.0	0.0	.	89	.	.	Atlas-SNP
C17orf99	100141515	hgsc.bcm.edu	hg19	17	76157076	76157076	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	.	NM_001163075	exon3	c.A111G	p.E37E	CCTGGAAGTTTTC	.	162.0	27.0	150.0	0.0	.	.	.	.	Atlas-SNP
BAIAP2	10458	hgsc.bcm.edu	hg19	17	79077867	79077867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	BAIAP2	NM_001144888	exon9	c.C1025T	p.P342L	CACTCCCCGTGCG	.	222.0	66.0	204.0	0.0	.	74	.	.	Atlas-SNP
DSG1	1828	hgsc.bcm.edu	hg19	18	28934321	28934321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	DSG1	NM_001942	exon15	c.A2162G	p.Y721C	TCATATATGACAT	.	62.0	23.0	89.0	0.0	.	176	.	.	Atlas-SNP
PIGN	23556	hgsc.bcm.edu	hg19	18	59777111	59777111	+	Silent	SNP	T	T	C	rs373958969		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PIGN	NM_176787	exon17	c.A1530G	p.V510V	ACCATATACATAA	.	180.0	138.0	240.0	1.0	.	62	.	.	Atlas-SNP
NETO1	81832	hgsc.bcm.edu	hg19	18	70526062	70526062	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	NETO1	NM_001201465	exon4	c.T468A	p.P156P	CTTACCAGGTGTG	.	112.0	47.0	151.0	0.0	.	178	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9038082	9038082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	MUC16	NM_024690	exon8	c.C36194A	p.S12065Y	CCTGTGGAGCTGG	.	133.0	118.0	181.0	0.0	.	4315	.	.	Atlas-SNP
ZNF763	284390	hgsc.bcm.edu	hg19	19	12089204	12089204	+	Nonsense_Mutation	SNP	T	T	G	rs372060440	alternate_allele	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ZNF763	NM_001012753	exon4	c.T474G	p.Y158X	CAGATATCACCCC	.	132.0	8.0	157.0	0.0	.	31	.	.	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	hg19	19	15350628	15350628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	BRD4	NM_058243	exon16	c.T3287C	p.L1096P	GCACGCAGCTCCT	.	43.0	35.0	58.0	0.0	.	172	.	.	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17759295	17759295	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	UNC13A_ENST00000519716,NS,carcinoma,0,2	UNC13A	NM_001080421	exon15	c.C1761T	p.C587C	GACACCGCACTCG	.	38.0	34.0	37.0	0.0	.	299	.	.	Atlas-SNP
GPATCH1	55094	hgsc.bcm.edu	hg19	19	33579137	33579137	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	GPATCH1,bladder,carcinoma,0,1	GPATCH1	NM_018025	exon2	c.C171T	p.F57F	AGGTTTCTCTGCT	.	87.0	9.0	77.0	0.0	.	79	.	.	Atlas-SNP
ZNF30	90075	hgsc.bcm.edu	hg19	19	35435284	35435284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ZNF30	NM_001099438	exon5	c.A1417G	p.T473A	CATCTCACACAGC	.	126.0	46.0	106.0	0.0	.	44	.	.	Atlas-SNP
ZNF30	90075	hgsc.bcm.edu	hg19	19	35435313	35435313	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ZNF30	NM_001099438	exon5	c.A1446G	p.V482V	TGATGTAAAGCCC	.	130.0	45.0	101.0	0.0	.	44	.	.	Atlas-SNP
ZNF607	84775	hgsc.bcm.edu	hg19	19	38202519	38202519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ZNF607	NM_001172677	exon2	c.A1G	p.M1V	AGGACATGGTTTG	.	130.0	66.0	86.0	0.0	.	82	.	.	Atlas-SNP
PSG7	5676	hgsc.bcm.edu	hg19	19	43430643	43430643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	.	NM_001206650	exon3	c.T569C	p.I190T	TCCCGTATTTCAC	.	109.0	52.0	73.0	0.0	.	.	.	.	Atlas-SNP
ZNF155	7711	hgsc.bcm.edu	hg19	19	44500765	44500765	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ZNF155	NM_001260488	exon6	c.A789G	p.K263K	TCGTAAATTACAC	.	183.0	37.0	121.0	0.0	.	30	.	.	Atlas-SNP
SNRNP70	6625	hgsc.bcm.edu	hg19	19	49604657	49604657	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	SNRNP70	NM_003089	exon7	c.T404G	p.V135G	ACATGGTCTACAG	.	114.0	7.0	70.0	0.0	.	30	.	.	Atlas-SNP
PTPRH	5794	hgsc.bcm.edu	hg19	19	55715250	55715250	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PTPRH	NM_002842	exon5	c.C786T	p.V262V	CACGGTGACTCTG	.	164.0	31.0	120.0	0.0	.	139	.	.	Atlas-SNP
PLCB1	23236	hgsc.bcm.edu	hg19	20	8705358	8705358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PLCB1	NM_015192	exon16	c.T1637G	p.V546G	TGAACTATATTCA	.	118.0	46.0	82.0	0.0	.	394	.	.	Atlas-SNP
CYP24A1	1591	hgsc.bcm.edu	hg19	20	52773780	52773780	+	Missense_Mutation	SNP	T	T	G	rs77167734	bycluster;alternate_allele	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	CYP24A1	NM_000782	exon11	c.A1483C	p.M495L	GTAGCATCTCAAC	.	189.0	10.0	99.0	0.0	.	75	.	.	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	hg19	20	62196516	62196516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	.	NM_001037335	exon9	c.A3659G	p.N1220S	GAGCCATTGATGG	.	179.0	10.0	130.0	0.0	.	.	.	.	Atlas-SNP
TMPRSS6	164656	hgsc.bcm.edu	hg19	22	37485802	37485802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	TMPRSS6	NM_153609	exon7	c.G679A	p.V227M	GGCCCACGTAGCT	.	256.0	70.0	219.0	0.0	.	99	.	.	Atlas-SNP
C22orf46	79640	hgsc.bcm.edu	hg19	22	42086737	42086737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	C22orf46	NM_001142964	exon1	c.C106T	p.P36S	AGGGACCCTCAGT	.	79.0	33.0	87.0	0.0	.	4	.	.	Atlas-SNP
BEND2	139105	hgsc.bcm.edu	hg19	X	18189191	18189191	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	BEND2	NM_153346	exon13	c.A2115G	p.Q705Q	GTTACTTTGGACC	.	94.0	7.0	107.0	0.0	.	108	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20187519	20187519	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	RPS6KA3	NM_004586	exon17	c.1443+1G>A	.	TACTTACATCCTT	.	38.0	20.0	64.0	0.0	.	110	.	.	Atlas-SNP
FAM155B	27112	hgsc.bcm.edu	hg19	X	68748901	68748901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	FAM155B	NM_015686	exon2	c.G927T	p.W309C	GCGCTGGGTGCCC	.	136.0	117.0	128.0	1.0	.	44	.	.	Atlas-SNP
ACRC	93953	hgsc.bcm.edu	hg19	X	70811974	70811974	+	Missense_Mutation	SNP	A	A	G	rs36115715	bycluster	TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	ACRC	NM_052957	exon3	c.A62G	p.Y21C	GCAGTTACATCCT	.	285.0	25.0	237.0	0.0	.	110	.	.	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	hg19	X	73963968	73963968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	KIAA2022	NM_001008537	exon3	c.C424T	p.P142S	GACTTGGCTGCAT	.	122.0	6.0	69.0	0.0	.	262	.	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	hg19	X	91132817	91132817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PCDH11X	NM_001168363	exon2	c.G1578T	p.K526N	AGTGAAGAAACTA	.	206.0	18.0	192.0	0.0	.	714	.	.	Atlas-SNP
LDOC1	23641	hgsc.bcm.edu	hg19	X	140271004	140271004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	LDOC1	NM_012317	exon1	c.T203C	p.I68T	TGCACGATAAACT	.	87.0	11.0	63.0	0.0	.	26	.	.	Atlas-SNP
MCF2	4168	hgsc.bcm.edu	hg19	X	138729064	138729064	+	Splice_Site	DEL	T	T	-	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	MCF2	NM_001171876	exon4	c.26-1A>-	.	.	.	377.0	34.0	285.0	0.0	.	432	.	.	Atlas-INDEL
L2HGDH	79944	hgsc.bcm.edu	hg19	14	50760900	50760900	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	L2HGDH	NM_024884	exon4	c.474delG	p.Q158fs	.	.	68.0	14.0	59.0	0.0	.	33	.	.	Atlas-INDEL
PLCB3	5331	hgsc.bcm.edu	hg19	11	64032516	64032517	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PLCB3	NM_000932	exon23	c.2746_2747insC	p.S916fs	.	.	178.0	11.0	194.0	0.0	.	103	.	.	Atlas-INDEL
CMKLR1	1240	hgsc.bcm.edu	hg19	12	108686420	108686420	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	CMKLR1	NM_001142344	exon3	c.321delC	p.F107fs	.	.	256.0	50.0	215.0	0.0	.	67	.	.	Atlas-INDEL
UGT2B4	7363	hgsc.bcm.edu	hg19	4	70361015	70361018	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	ACAG	ACAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	UGT2B4	NM_021139	exon1	c.563_566del	p.188_189del	.	.	126.0	42.0	170.0	0.0	.	105	.	.	Atlas-INDEL
EFHC2	80258	hgsc.bcm.edu	hg19	X	44035625	44035625	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	EFHC2	NM_025184	exon13	c.1956delT	p.N652fs	.	.	99.0	34.0	59.0	0.0	.	81	.	.	Atlas-INDEL
PIGV	55650	hgsc.bcm.edu	hg19	1	27124181	27124200	+	Frame_Shift_Del	DEL	CCCCACCAGGACAAAAGGTC	CCCCACCAGGACAAAAGGTC	-	novel		TCGA-DD-AACP-01A-11D-A40R-10	TCGA-DD-AACP-10A-01D-A40U-10	CCCCACCAGGACAAAAGGTC	CCCCACCAGGACAAAAGGTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d1a97e7e-0519-436d-940f-2e59ec5f7a59	4d93e7d7-d828-4696-a682-754d76c9bb04	.	PIGV	NM_001202554	exon4	c.1327_1346del	p.443_449del	.	.	80.0	14.0	118.0	0.0	.	47	.	.	Atlas-INDEL