Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PADI3	51702	hgsc.bcm.edu	hg19	1	17586148	17586148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	PADI3	NM_016233	exon2	c.G168A	p.M56I	CAACATGGAGAGG	.	177.0	66.0	178.0	0.0	.	81	.	.	Atlas-SNP
SF3B4	10262	hgsc.bcm.edu	hg19	1	149895819	149895819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	SF3B4	NM_005850	exon5	c.C1001G	p.P334R	CGGGGCGGTGGCT	.	245.0	67.0	206.0	0.0	.	37	.	.	Atlas-SNP
CD247	919	hgsc.bcm.edu	hg19	1	167407853	167407853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	CD247	NM_198053	exon4	c.T254C	p.V85A	TCCAAAACATCGT	.	145.0	38.0	119.0	0.0	.	25	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54786000	54786000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	SPTBN1	NM_178313	exon1	c.G85A	p.E29K	CAGCTGGAAGGCA	.	525.0	150.0	574.0	0.0	.	378	.	.	Atlas-SNP
FER1L5	90342	hgsc.bcm.edu	hg19	2	97354959	97354959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	FER1L5	NM_001113382	exon24	c.C2356A	p.Q786K	GAGAATCAGGCCA	.	237.0	75.0	285.0	0.0	.	113	.	.	Atlas-SNP
PDCL3	79031	hgsc.bcm.edu	hg19	2	101192856	101192856	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	PDCL3	NM_024065	exon6	c.A618G	p.T206T	TATGACAGACCTG	.	83.0	12.0	77.0	0.0	.	27	.	.	Atlas-SNP
TMEM43	79188	hgsc.bcm.edu	hg19	3	14174384	14174384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	TMEM43	NM_024334	exon6	c.A461G	p.E154G	GGTCAGAAATCAT	.	185.0	54.0	183.0	0.0	.	33	.	.	Atlas-SNP
ITIH4	3700	hgsc.bcm.edu	hg19	3	52847499	52847499	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	ITIH4	NM_002218	exon24	c.A2731C	p.R911R	CCAGCCTGCGCTC	.	172.0	56.0	207.0	0.0	.	74	.	.	Atlas-SNP
ABHD10	55347	hgsc.bcm.edu	hg19	3	111705759	111705759	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	ABHD10	NM_001272069	exon4	c.439-2A>G	.	ATTTTTAGATTCT	.	25.0	7.0	35.0	0.0	.	20	.	.	Atlas-SNP
CPNE4	131034	hgsc.bcm.edu	hg19	3	131388547	131388547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	CPNE4	NM_130808	exon7	c.G653A	p.C218Y	CCGCTGCATAGAG	.	51.0	13.0	69.0	0.0	.	112	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178916726	178916726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	PIK3CA_ENST00000263967,caecum,carcinoma,+1,16	PIK3CA	NM_006218	exon2	c.G113A	p.R38H	GCCTCCGTGAGGC	.	170.0	51.0	217.0	0.0	.	8460	.	.	Atlas-SNP
YIPF7	285525	hgsc.bcm.edu	hg19	4	44631421	44631421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	YIPF7	NM_182592	exon4	c.T497C	p.L166P	ATTACCAGAAGCA	.	346.0	18.0	87.0	0.0	.	33	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123275094	123275094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	KIAA1109,colon,carcinoma,0,3	KIAA1109	NM_015312	exon80	c.C14227T	p.R4743C	ACAAGGCGTCGCC	.	160.0	65.0	281.0	0.0	.	424	.	.	Atlas-SNP
ELMOD2	255520	hgsc.bcm.edu	hg19	4	141464674	141464674	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	ELMOD2	NM_153702	exon8	c.T670C	p.L224L	GAAGCTTTGAAGT	.	37.0	16.0	48.0	0.0	.	16	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183721165	183721165	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	.	NM_001080477	exon27	c.C7761T	p.N2587N	GGTGAACGGCAGG	.	90.0	33.0	184.0	0.0	.	.	.	.	Atlas-SNP
ATG12	9140	hgsc.bcm.edu	hg19	5	115177201	115177201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	ATG12	NM_004707	exon1	c.G49T	p.A17S	CTCCAGCAGCAAT	.	129.0	33.0	143.0	0.0	.	14	.	.	Atlas-SNP
HAND1	9421	hgsc.bcm.edu	hg19	5	153857205	153857205	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	HAND1	NM_004821	exon1	c.C364G	p.P122A	CGTTGGGGATGCA	.	84.0	25.0	92.0	0.0	.	21	.	.	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	hg19	5	168180048	168180048	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	SLIT3	NM_001271946	exon18	c.A1885T	p.S629C	CCGAACTCAGGCC	.	121.0	43.0	157.0	0.0	.	224	.	.	Atlas-SNP
FGFR4	2264	hgsc.bcm.edu	hg19	5	176520342	176520342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	FGFR4_ENST00000292408,caecum,carcinoma,0,2	FGFR4	NM_022963	exon8	c.G1067A	p.R356H	CTGGGCGCATCCC	.	94.0	4.0	115.0	0.0	.	174	.	.	Atlas-SNP
GABBR1	2550	hgsc.bcm.edu	hg19	6	29599329	29599329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	GABBR1	NM_021904	exon3	c.G133A	p.G45S	TCAGGCCCCGGTA	.	149.0	6.0	134.0	0.0	.	95	.	.	Atlas-SNP
COL19A1	1310	hgsc.bcm.edu	hg19	6	70890211	70890211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	COL19A1	NM_001858	exon43	c.C2675T	p.P892L	GAAAACCTGGTGC	.	111.0	38.0	121.0	0.0	.	232	.	.	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	hg19	6	123868487	123868487	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	TRDN	NM_001256022	exon4	c.A422C	p.K141T	TAACCTTTTTTTC	.	464.0	138.0	626.0	0.0	.	88	.	.	Atlas-SNP
ECT2L	345930	hgsc.bcm.edu	hg19	6	139164328	139164328	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	ECT2L	NM_001195037	exon5	c.C555T	p.C185C	AAAGTGCCTGAGG	.	123.0	40.0	143.0	0.0	.	75	.	.	Atlas-SNP
TAGAP	117289	hgsc.bcm.edu	hg19	6	159456896	159456896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	TAGAP	NM_054114	exon10	c.C2159T	p.A720V	TGGTCAGCCTCAA	.	62.0	16.0	88.0	0.0	.	75	.	.	Atlas-SNP
ELFN1	392617	hgsc.bcm.edu	hg19	7	1785451	1785451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	ELFN1	NM_001128636	exon2	c.G1219A	p.G407S	CCGCCTGGTCCGG	.	85.0	23.0	73.0	0.0	.	22	.	.	Atlas-SNP
CSGALNACT1	55790	hgsc.bcm.edu	hg19	8	19315958	19315958	+	Missense_Mutation	SNP	C	C	T	rs35454485		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	CSGALNACT1	NM_018371	exon5	c.G830A	p.R277Q	AACTGCCGGAACT	.	140.0	58.0	207.0	0.0	.	72	.	C|0.987;T|0.013	Atlas-SNP
SNX30	401548	hgsc.bcm.edu	hg19	9	115567201	115567201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	SNX30	NM_001012994	exon2	c.A302T	p.H101L	AGAAGCATGTGTG	.	79.0	30.0	91.0	0.0	.	32	.	.	Atlas-SNP
USP54	159195	hgsc.bcm.edu	hg19	10	75276875	75276875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	USP54	NM_152586	exon18	c.A3309C	p.K1103N	TGAAGTTTTGAGG	.	112.0	26.0	76.0	0.0	.	178	.	.	Atlas-SNP
SEC24C	9632	hgsc.bcm.edu	hg19	10	75519919	75519919	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	SEC24C	NM_198597	exon5	c.C625T	p.Q209X	CCATCACAGGCCT	.	102.0	25.0	78.0	0.0	.	86	.	.	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129901847	129901847	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	MKI67	NM_002417	exon13	c.G8257C	p.D2753H	CTTTGTCTGCATC	.	55.0	26.0	105.0	0.0	.	363	.	.	Atlas-SNP
OR9G4	283189	hgsc.bcm.edu	hg19	11	56510313	56510313	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	OR9G4	NM_001005284	exon1	c.A975G	p.P325P	TGTTTGTGGTTGT	.	75.0	18.0	86.0	0.0	.	73	.	.	Atlas-SNP
LPXN	9404	hgsc.bcm.edu	hg19	11	58345512	58345512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	LPXN	NM_001143995	exon1	c.C8T	p.T3I	AATAATGTAGACA	.	178.0	46.0	194.0	0.0	.	55	.	.	Atlas-SNP
GDPD5	81544	hgsc.bcm.edu	hg19	11	75146556	75146556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	GDPD5	NM_030792	exon17	c.G1814A	p.R605H	AGCTAACGCCCAC	.	32.0	5.0	45.0	0.0	.	49	.	.	Atlas-SNP
CADM1	23705	hgsc.bcm.edu	hg19	11	115047195	115047195	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	CADM1	NM_014333	exon10	c.A1328T	p.X443L	CTGATCTAGATGA	.	109.0	30.0	115.0	0.0	.	74	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117375644	117375644	+	Missense_Mutation	SNP	G	G	A	rs147991561		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	DSCAML1,arm,malignant_melanoma,+1,1	DSCAML1	NM_020693	exon10	c.C2357T	p.A786V	CCCTTGGCATGCT	.	61.0	15.0	70.0	0.0	.	286	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57586981	57586981	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	LRP1	NM_002332	exon46	c.A7578G	p.A2526A	CCGAGCACAAGAT	.	66.0	13.0	62.0	0.0	.	428	.	.	Atlas-SNP
FAM71C	196472	hgsc.bcm.edu	hg19	12	100041989	100041989	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	FAM71C	NM_153364	exon1	c.C37T	p.Q13X	ACGGCCCAAAGCA	.	97.0	30.0	102.0	0.0	.	48	.	.	Atlas-SNP
DHX37	57647	hgsc.bcm.edu	hg19	12	125451681	125451681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	DHX37	NM_032656	exon11	c.G1492T	p.A498S	GCCGGGCTCTGGA	.	63.0	17.0	53.0	0.0	.	114	.	.	Atlas-SNP
FSCB	84075	hgsc.bcm.edu	hg19	14	44975143	44975143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	FSCB	NM_032135	exon1	c.A1048G	p.I350V	GCAGAATTTCAGC	.	123.0	35.0	135.0	0.0	.	173	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28501325	28501325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	HERC2,NS,carcinoma,0,1	HERC2	NM_004667	exon18	c.G2656T	p.A886S	CCTGGGCGGCCGA	.	30.0	6.0	27.0	0.0	.	501	.	.	Atlas-SNP
FBXW10	10517	hgsc.bcm.edu	hg19	17	18654340	18654340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	FBXW10	NM_001267585	exon5	c.C1096A	p.H366N	GTGAAACATCCGA	.	60.0	23.0	102.0	0.0	.	82	.	.	Atlas-SNP
USP22	23326	hgsc.bcm.edu	hg19	17	20919117	20919117	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	USP22	NM_015276	exon6	c.C786T	p.D262D	GTGGGCGTCCTGC	.	59.0	26.0	107.0	0.0	.	45	.	.	Atlas-SNP
DHRS7B	25979	hgsc.bcm.edu	hg19	17	21075458	21075458	+	Missense_Mutation	SNP	C	C	G	rs115639276	by1000genomes;alternate_allele	TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	DHRS7B	NM_015510	exon2	c.C148G	p.L50V	GCCTACCTGCGGA	.	99.0	43.0	148.0	0.0	.	27	.	C|0.995;T|0.005	Atlas-SNP
CA10	56934	hgsc.bcm.edu	hg19	17	49710849	49710849	+	Missense_Mutation	SNP	G	G	A	rs375126312		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	CA10	NM_001082534	exon9	c.C952T	p.L318F	ACTGAAGCTTCTG	.	125.0	41.0	153.0	0.0	.	84	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65905802	65905802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	BPTF	NM_004459	exon12	c.A3295G	p.K1099E	GAGGTAAAAGGTT	.	201.0	51.0	227.0	0.0	.	415	.	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	hg19	17	71361407	71361407	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	SDK2	NM_001144952	exon38	c.C5295T	p.S1765S	CACGGGGCTGCAG	.	41.0	21.0	64.0	0.0	.	219	.	.	Atlas-SNP
PPP5C	5536	hgsc.bcm.edu	hg19	19	46891672	46891672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	PPP5C	NM_006247	exon10	c.G1143A	p.M381I	GCCCATGTGTGAC	.	99.0	35.0	90.0	0.0	.	44	.	.	Atlas-SNP
SIGLEC14	100049587	hgsc.bcm.edu	hg19	19	52147072	52147072	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	SIGLEC14	NM_001098612	exon5	c.G972A	p.P324P	GCCCAGCGGATGC	.	125.0	34.0	115.0	0.0	.	46	.	.	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	hg19	19	57065248	57065248	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	ZFP28	NM_020828	exon8	c.A1094T	p.N365I	CTCATAACAAAAC	.	179.0	91.0	165.0	0.0	.	99	.	.	Atlas-SNP
SLC5A4	6527	hgsc.bcm.edu	hg19	22	32620469	32620469	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	SLC5A4	NM_014227	exon13	c.G1450T	p.G484X	ATGCTCCCTGCAA	.	114.0	35.0	125.0	0.0	.	82	.	.	Atlas-SNP
APOBEC3B	9582	hgsc.bcm.edu	hg19	22	39387543	39387543	+	Silent	SNP	C	C	G	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	APOBEC3B	NM_004900	exon6	c.C930G	p.A310A	CGCTGCCCGCATC	.	183.0	37.0	205.0	0.0	.	32	.	.	Atlas-SNP
MAOB	4129	hgsc.bcm.edu	hg19	X	43634423	43634423	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	MAOB	NM_000898	exon12	c.A1234T	p.R412W	TCTACCTTCCATA	.	45.0	27.0	45.0	0.0	.	52	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7576854	7576860	+	Frame_Shift_Del	DEL	TGAAGGG	TGAAGGG	-	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	TGAAGGG	TGAAGGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	TP53_ENST00000455263,NS,carcinoma,0,3	TP53	NM_001126112	exon9	c.987_993del	p.329_331del	.	.	51.0	20.0	162.0	0.0	.	33396	.	.	Atlas-INDEL
NF1	4763	hgsc.bcm.edu	hg19	17	29657472	29657483	+	In_Frame_Del	DEL	CGTTAGAATTTT	CGTTAGAATTTT	-	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	CGTTAGAATTTT	CGTTAGAATTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	NF1	NM_001042492	exon39	c.5767_5778del	p.1923_1926del	.	.	87.0	17.0	100.0	0.0	.	1586	.	.	Atlas-INDEL
MLH3	27030	hgsc.bcm.edu	hg19	14	75485660	75485678	+	Frame_Shift_Del	DEL	GGCCATCATTAAACTTAAT	GGCCATCATTAAACTTAAT	-	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	GGCCATCATTAAACTTAAT	GGCCATCATTAAACTTAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	MLH3	NM_001040108	exon12	c.4097_4115del	p.1366_1372del	.	.	85.0	16.0	77.0	0.0	.	200	.	.	Atlas-INDEL
C11orf48	79081	hgsc.bcm.edu	hg19	11	62437490	62437493	+	Frame_Shift_Del	DEL	GGCA	GGCA	-	novel		TCGA-DD-AACM-01A-11D-A40R-10	TCGA-DD-AACM-10A-01D-A40U-10	GGCA	GGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	7f581ac9-bc00-4c25-8727-7069d737912e	c758de19-378a-4db8-b408-599509d3864c	.	C11orf48	NM_024099	exon2	c.12_15del	p.4_5del	.	.	62.0	18.0	76.0	0.0	.	18	.	.	Atlas-INDEL