Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm SKI 6497 hgsc.bcm.edu hg19 1 2236002 2236002 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SKI NM_003036 exon5 c.A1745T p.Q582L CCCTGCAGGCCAA . 83.0 14.0 67.0 0.0 . 33 . . Atlas-SNP SLC45A1 50651 hgsc.bcm.edu hg19 1 8384424 8384424 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SLC45A1 NM_001080397 exon1 c.A35T p.D12V CGGGAGATGCCCT . 79.0 19.0 82.0 0.0 . 85 . . Atlas-SNP EXOSC10 5394 hgsc.bcm.edu hg19 1 11142771 11142771 + Silent SNP T T C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . EXOSC10 NM_001001998 exon10 c.A1254G p.Q418Q CTGATATTGCTTG . 122.0 22.0 101.0 0.0 . 59 . . Atlas-SNP LRRC38 126755 hgsc.bcm.edu hg19 1 13839491 13839491 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LRRC38 NM_001010847 exon1 c.T598A p.W200R GGATCCAGGAGAA . 153.0 35.0 146.0 0.0 . 12 . . Atlas-SNP NBPF3 84224 hgsc.bcm.edu hg19 1 21799874 21799874 + Missense_Mutation SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NBPF3 NM_001256416 exon7 c.C736T p.L246F ATCAGGGAGGTGC . 133.0 39.0 90.0 0.0 . 55 . . Atlas-SNP CLSPN 63967 hgsc.bcm.edu hg19 1 36226433 36226433 + Missense_Mutation SNP T T A rs78526448 bycluster;alternate_allele TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CLSPN NM_001190481 exon8 c.A1089T p.K363N AGAACCTTTACTA . 40.0 7.0 34.0 0.0 . 248 . . Atlas-SNP MSH4 4438 hgsc.bcm.edu hg19 1 76378494 76378494 + Missense_Mutation SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MSH4 NM_002440 exon20 c.A2733G p.I911M ACGAATATATTTA . 156.0 34.0 149.0 0.0 . 147 . . Atlas-SNP LPHN2 23266 hgsc.bcm.edu hg19 1 82456641 82456641 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LPHN2 NM_012302 exon20 c.A4024T p.R1342W CCCTCCAGGAGGA . 98.0 18.0 99.0 0.0 . 464 . . Atlas-SNP RPAP2 79871 hgsc.bcm.edu hg19 1 92846304 92846304 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RPAP2 NM_024813 exon12 c.A1712T p.Q571L GCATTCAGAAACA . 67.0 13.0 65.0 0.0 . 48 . . Atlas-SNP IGSF3 3321 hgsc.bcm.edu hg19 1 117127378 117127378 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . IGSF3 NM_001542 exon10 c.A2797T p.S933C TCCCGCTGTCCTG . 102.0 28.0 76.0 0.0 . 294 . . Atlas-SNP CGN 57530 hgsc.bcm.edu hg19 1 151501990 151501990 + Silent SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CGN NM_020770 exon11 c.A2061G p.Q687Q GCTACAAAAGACC . 250.0 94.0 166.0 0.0 . 106 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152281864 152281864 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FLG NM_002016 exon3 c.T5498A p.V1833E CTATCTACCGATT . 116.0 31.0 84.0 0.0 . 900 . . Atlas-SNP S100A7A 338324 hgsc.bcm.edu hg19 1 153391627 153391627 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . S100A7A NM_176823 exon3 c.A148T p.K50X GACAAAAAGGGCA . 337.0 122.0 226.0 0.0 . 24 . . Atlas-SNP THBS3 7059 hgsc.bcm.edu hg19 1 155165894 155165894 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . THBS3 NM_007112 exon22 c.A2696T p.Q899L ACAAGCTGGGGTC . 131.0 16.0 69.0 0.0 . 70 . . Atlas-SNP ARHGAP30 257106 hgsc.bcm.edu hg19 1 161023128 161023128 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ARHGAP30 NM_001025598 exon6 c.T584A p.M195K ACCTCCATGAAGG . 119.0 46.0 79.0 0.0 . 105 . . Atlas-SNP OLFML2B 25903 hgsc.bcm.edu hg19 1 161968003 161968003 + Silent SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OLFML2B NM_015441 exon6 c.C1086T p.S362S CAGGTCGCTTGTC . 135.0 24.0 111.0 0.0 . 114 . . Atlas-SNP KIF21B 23046 hgsc.bcm.edu hg19 1 200974470 200974470 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KIF21B NM_017596 exon5 c.T698A p.L233Q TGGCACAGGTGGA . 58.0 21.0 43.0 0.0 . 208 . . Atlas-SNP NFASC 23114 hgsc.bcm.edu hg19 1 204923314 204923314 + Splice_Site SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NFASC NM_015090 exon5 c.198-2A>T . CTCCACAGCTTCC . 86.0 23.0 72.0 0.0 . 396 . . Atlas-SNP TGFB2 7042 hgsc.bcm.edu hg19 1 218609331 218609331 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TGFB2 NM_001135599 exon6 c.A858T p.T286T CTCCACATATACC . 193.0 28.0 100.0 0.0 . 102 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228520596 228520596 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OBSCN NM_001271223 exon68 c.A18559T p.T6187S GATGCCACGGAGT . 94.0 16.0 99.0 0.0 . 2142 . . Atlas-SNP OR2T12 127064 hgsc.bcm.edu hg19 1 248458280 248458280 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OR2T12 NM_001004692 exon1 c.T601A p.C201S ACACACAGCAGAT . 529.0 177.0 441.0 0.0 . 113 . . Atlas-SNP NTSR2 23620 hgsc.bcm.edu hg19 2 11798756 11798756 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NTSR2 NM_012344 exon4 c.T1082A p.V361E GAGGACACGGCGT . 112.0 27.0 66.0 0.0 . 36 . . Atlas-SNP DPYSL5 56896 hgsc.bcm.edu hg19 2 27121452 27121452 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DPYSL5 NM_001253724 exon2 c.T85A p.Y29N GACGTCTACATCG . 208.0 38.0 219.0 0.0 . 69 . . Atlas-SNP LRPPRC 10128 hgsc.bcm.edu hg19 2 44187687 44187687 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LRPPRC NM_133259 exon13 c.A1575T p.L525F AAATGATAATACA . 71.0 12.0 52.0 0.0 . 105 . . Atlas-SNP TSPYL6 388951 hgsc.bcm.edu hg19 2 54483166 54483166 + Silent SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TSPYL6 NM_001003937 exon1 c.T123C p.D41D GCGGCCATCAAAC . 82.0 18.0 93.0 0.0 . 54 . . Atlas-SNP LMAN2L 81562 hgsc.bcm.edu hg19 2 97373021 97373021 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LMAN2L NM_001142292 exon9 c.A1052T p.Q351L TGTTCCTGCCATT . 169.0 39.0 164.0 0.0 . 27 . . Atlas-SNP CHST10 9486 hgsc.bcm.edu hg19 2 101023082 101023082 + Missense_Mutation SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CHST10 NM_004854 exon3 c.T56C p.M19T GCCACCATGAACA . 127.0 37.0 98.0 0.0 . 42 . . Atlas-SNP RIF1 55183 hgsc.bcm.edu hg19 2 152298453 152298453 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RIF1 NM_018151 exon16 c.A1682T p.Q561L TTCCTCAGAAAGT . 429.0 108.0 336.0 0.0 . 244 . . Atlas-SNP TANC1 85461 hgsc.bcm.edu hg19 2 160086384 160086384 + Missense_Mutation SNP G G T rs370179463 alternate_allele TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TANC1 NM_033394 exon27 c.G4447T p.V1483F TCATCTGTCCCTT . 149.0 37.0 116.0 0.0 . 157 . . Atlas-SNP PLA2R1 22925 hgsc.bcm.edu hg19 2 160873149 160873149 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PLA2R1 NM_001195641 exon9 c.T1527A p.S509S AGCATCAGAGAGG . 100.0 20.0 87.0 0.0 . 153 . . Atlas-SNP SCN3A 6328 hgsc.bcm.edu hg19 2 165987869 165987869 + Missense_Mutation SNP T T G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SCN3A NM_006922 exon16 c.A2450C p.Y817S TAGTAATAAGGAT . 295.0 71.0 248.0 0.0 . 544 . . Atlas-SNP GAD1 2571 hgsc.bcm.edu hg19 2 171705847 171705847 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GAD1 NM_000817 exon12 c.A1171T p.N391Y AAACTCAACGGCA . 46.0 14.0 39.0 0.0 . 79 . . Atlas-SNP PDE11A 50940 hgsc.bcm.edu hg19 2 178528616 178528616 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 PDE11A_ENST00000358450,caecum,carcinoma,0,2 PDE11A NM_016953 exon19 c.G2624A p.S875N CAGATGCTATCAA . 70.0 19.0 72.0 0.0 . 283 . . Atlas-SNP CWC22 57703 hgsc.bcm.edu hg19 2 180835257 180835257 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CWC22 NM_020943 exon11 c.A1181T p.N394I TCTTCATTCTCCA . 251.0 52.0 218.0 0.0 . 62 . . Atlas-SNP FRZB 2487 hgsc.bcm.edu hg19 2 183699694 183699694 + Splice_Site SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FRZB NM_001463 exon7 c.862-2A>T . CAGCGCTGTGAAA . 73.0 30.0 66.0 0.0 . 42 . . Atlas-SNP CCDC150 284992 hgsc.bcm.edu hg19 2 197540923 197540923 + Silent SNP A A T rs367679012 alternate_allele TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CCDC150 NM_001080539 exon11 c.A1194T p.A398A GGATGCAGCCCAT . 253.0 65.0 214.0 0.0 . 96 . . Atlas-SNP MAP2 4133 hgsc.bcm.edu hg19 2 210560487 210560487 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 MAP2,NS,carcinoma,0,1 MAP2 NM_002374 exon7 c.A3593T p.Q1198L TTATTCAGGGGCC . 131.0 32.0 111.0 0.0 . 372 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210778581 210778581 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . UNC80 NM_032504 exon30 c.T4748A p.L1583Q CAATTCTGACAGA . 167.0 34.0 199.0 0.0 . 280 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210858068 210858068 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . UNC80 NM_032504 exon62 c.A9228T p.K3076N TCAGAAAACTCAG . 135.0 32.0 100.0 0.0 . 280 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215840627 215840627 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ABCA12 NM_173076 exon34 c.A5263T p.I1755F AGACGATGGGGAG . 199.0 61.0 136.0 0.0 . 368 . . Atlas-SNP RESP18 389075 hgsc.bcm.edu hg19 2 220194381 220194381 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RESP18 NM_001007089 exon4 c.T443A p.L148H GGGAAAAGTGCCT . 114.0 27.0 87.0 0.0 . 13 . . Atlas-SNP EPHA4 2043 hgsc.bcm.edu hg19 2 222365815 222365815 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . EPHA4 NM_004438 exon4 c.T901A p.W301R CTTCCCAGACAGA . 66.0 10.0 55.0 0.0 . 263 . . Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4726008 4726008 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ITPR1 NM_001099952 exon29 c.A3515T p.Y1172F GCAGCTACAACTA . 119.0 19.0 64.0 0.0 . 659 . . Atlas-SNP BRPF1 7862 hgsc.bcm.edu hg19 3 9784748 9784748 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . BRPF1 NM_001003694 exon7 c.A2122T p.S708C ATCGTCAGCAACT . 172.0 52.0 135.0 0.0 . 104 . . Atlas-SNP ZNF619 285267 hgsc.bcm.edu hg19 3 40529425 40529425 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZNF619 NM_001145082 exon6 c.A1544T p.Q515L AGCATCAGAAGTG . 105.0 39.0 83.0 0.0 . 57 . . Atlas-SNP NEK4 6787 hgsc.bcm.edu hg19 3 52794925 52794925 + Silent SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NEK4 NM_003157 exon6 c.T849C p.N283N GTCACCATTTTTA . 75.0 20.0 61.0 0.0 . 51 . . Atlas-SNP SPICE1 152185 hgsc.bcm.edu hg19 3 113218394 113218394 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SPICE1 NM_144718 exon4 c.A183T p.R61S TAATGCTCTATTC . 103.0 43.0 74.0 0.0 . 130 . . Atlas-SNP ARHGAP31 57514 hgsc.bcm.edu hg19 3 119133709 119133709 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ARHGAP31 NM_020754 exon12 c.T2933A p.L978H CTAATCTTGAAAC . 107.0 32.0 66.0 0.0 . 175 . . Atlas-SNP TMEM39A 55254 hgsc.bcm.edu hg19 3 119156670 119156670 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TMEM39A NM_018266 exon6 c.A856T p.K286X CCTCCTTGATTCT . 173.0 36.0 107.0 0.0 . 36 . . Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121208682 121208682 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . POLQ NM_199420 exon16 c.A3096T p.S1032S CTTTTCTGAATTG . 89.0 15.0 57.0 0.0 . 273 . . Atlas-SNP IGSF10 285313 hgsc.bcm.edu hg19 3 151171236 151171236 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . IGSF10 NM_178822 exon3 c.T651A p.H217Q GTTTCCATGCAGG . 177.0 32.0 148.0 0.0 . 279 . . Atlas-SNP PLCH1 23007 hgsc.bcm.edu hg19 3 155198967 155198967 + Silent SNP A A T rs201081912 bycluster;by1000genomes;alternate_allele TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PLCH1 NM_001130960 exon23 c.T4872A p.P1624P CACTGCAGGGGTG . 163.0 62.0 117.0 0.0 . 406 . A|0.999;G|0.001 Atlas-SNP GMPS 8833 hgsc.bcm.edu hg19 3 155640020 155640020 + Missense_Mutation SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GMPS NM_003875 exon11 c.A1363G p.I455V CCTTATATTTGTA . 539.0 179.0 357.0 0.0 . 70 . . Atlas-SNP OPA1 4976 hgsc.bcm.edu hg19 3 193353249 193353249 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OPA1 NM_130837 exon9 c.A886T p.K296X GAGAACAAAGAAT . 340.0 89.0 230.0 0.0 . 79 . . Atlas-SNP UBXN7 26043 hgsc.bcm.edu hg19 3 196096315 196096315 + Missense_Mutation SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . UBXN7 NM_015562 exon7 c.T683C p.V228A ATGGAAACATAGG . 94.0 20.0 54.0 0.0 . 43 . . Atlas-SNP FBXO45 200933 hgsc.bcm.edu hg19 3 196296086 196296086 + Missense_Mutation SNP G G C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FBXO45 NM_001105573 exon1 c.G231C p.E77D CAGCGAGGTGTGG . 84.0 19.0 59.0 0.0 . 18 . . Atlas-SNP IQCG 84223 hgsc.bcm.edu hg19 3 197640825 197640825 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . IQCG NM_032263 exon8 c.A815T p.N272I TCGGTATTGGTTT . 127.0 34.0 114.0 0.0 . 44 . . Atlas-SNP OTOP1 133060 hgsc.bcm.edu hg19 4 4228281 4228281 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OTOP1 NM_177998 exon1 c.T311A p.L104Q CACAGCAGCTGCA . 44.0 11.0 39.0 0.0 . 118 . . Atlas-SNP ATP10D 57205 hgsc.bcm.edu hg19 4 47548881 47548881 + Splice_Site SNP T T C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ATP10D NM_020453 exon10 c.1635+2T>C . CCATTGTAAGTAT . 88.0 10.0 76.0 0.0 . 168 . . Atlas-SNP UGT2B17 7367 hgsc.bcm.edu hg19 4 69434019 69434019 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . UGT2B17 NM_001077 exon1 c.A184T p.I62F CAAGAATAGAAGC . 219.0 103.0 203.0 0.0 . 34 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88536436 88536436 + Silent SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DSPP NM_014208 exon5 c.C2622T p.S874S CAGCAGCAACAGC . 188.0 19.0 205.0 0.0 . 174 . . Atlas-SNP MMRN1 22915 hgsc.bcm.edu hg19 4 90857648 90857648 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MMRN1 NM_007351 exon6 c.A2817T p.S939S TGTGTCAGAACTG . 81.0 15.0 95.0 0.0 . 174 . . Atlas-SNP EGF 1950 hgsc.bcm.edu hg19 4 110882063 110882063 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . EGF NM_001963 exon7 c.T1107A p.L369L TACTCTTGGGTGT . 108.0 30.0 116.0 0.0 . 113 . . Atlas-SNP MYOZ2 51778 hgsc.bcm.edu hg19 4 120072181 120072181 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MYOZ2 NM_016599 exon3 c.T231A p.S77S TCAATCTAGAGCA . 77.0 14.0 95.0 0.0 . 34 . . Atlas-SNP BBS7 55212 hgsc.bcm.edu hg19 4 122789150 122789150 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . BBS7 NM_018190 exon2 c.A88T p.R30X TAGCTCTGTGTCT . 89.0 27.0 80.0 0.0 . 61 . . Atlas-SNP PCDH18 54510 hgsc.bcm.edu hg19 4 138442493 138442493 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PCDH18 NM_019035 exon4 c.A3098T p.N1033I AGGGAGTTGGACC . 97.0 30.0 98.0 0.0 . 229 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155156629 155156629 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DCHS2 NM_017639 exon25 c.A7810T p.S2604C CGTTACTGCAGTC . 62.0 20.0 80.0 0.0 . 594 . . Atlas-SNP ANP32C 23520 hgsc.bcm.edu hg19 4 165118291 165118291 + Missense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ANP32C NM_012403 exon1 c.G573T p.E191D TTCCTCCTCCTCC . 72.0 25.0 71.0 0.0 . 59 . . Atlas-SNP ADCY2 108 hgsc.bcm.edu hg19 5 7707845 7707845 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ADCY2 NM_020546 exon9 c.T1295A p.L432Q TCACCCTGGAGCA . 118.0 24.0 97.0 0.0 . 337 . . Atlas-SNP CTNND2 1501 hgsc.bcm.edu hg19 5 11385034 11385034 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CTNND2 NM_001332 exon7 c.T920A p.L307Q TTGGCCAGGCGGC . 39.0 6.0 24.0 0.0 . 289 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13716756 13716756 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DNAH5 NM_001369 exon74 c.A12749T p.Q4250L CCATATTGAATCT . 86.0 24.0 64.0 0.0 . 868 . . Atlas-SNP CDH18 1016 hgsc.bcm.edu hg19 5 19483513 19483513 + Missense_Mutation SNP T T G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CDH18 NM_004934 exon12 c.A1779C p.R593S CCCATCTCTCTCG . 171.0 43.0 133.0 0.0 . 561 . . Atlas-SNP CDH6 1004 hgsc.bcm.edu hg19 5 31322954 31322954 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CDH6 NM_004932 exon12 c.C1912T p.R638W CTGAGGCGGCAGC . 114.0 27.0 73.0 0.0 . 175 . . Atlas-SNP DROSHA 29102 hgsc.bcm.edu hg19 5 31472271 31472271 + Missense_Mutation SNP C C G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DROSHA NM_013235 exon16 c.G2140C p.V714L CAGGCACCAGGGC . 184.0 42.0 136.0 0.0 . 130 . . Atlas-SNP NIPBL 25836 hgsc.bcm.edu hg19 5 37049313 37049313 + Silent SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NIPBL NM_015384 exon40 c.G6864A p.E2288E GCTTGAGGCATTT . 136.0 30.0 92.0 0.0 . 513 . . Atlas-SNP MOCS2 4338 hgsc.bcm.edu hg19 5 52404403 52404403 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MOCS2 NM_176806 exon2 c.A89T p.Q30L ATTTCTTGAGGCA . 87.0 20.0 51.0 0.0 . 28 . . Atlas-SNP IPO11 51194 hgsc.bcm.edu hg19 5 61833050 61833050 + Silent SNP T T G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . IPO11 NM_001134779 exon24 c.T2304G p.G768G AGTAGGTCTATGC . 198.0 40.0 172.0 0.0 . 76 . . Atlas-SNP ELL2 22936 hgsc.bcm.edu hg19 5 95249476 95249476 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ELL2 NM_012081 exon4 c.A480T p.V160V CAAACCTACATAT . 71.0 20.0 77.0 0.0 . 63 . . Atlas-SNP PPP2CA 5515 hgsc.bcm.edu hg19 5 133534792 133534792 + Missense_Mutation SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PPP2CA NM_002715 exon6 c.C842A p.T281N TTTAGAGTATCGT . 85.0 18.0 65.0 0.0 . 29 . . Atlas-SNP SAR1B 51128 hgsc.bcm.edu hg19 5 133945262 133945262 + Missense_Mutation SNP T T G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SAR1B NM_001033503 exon6 c.A347C p.D116A CTTACATCAAGTT . 107.0 21.0 67.0 0.0 . 19 . . Atlas-SNP TRPC7 57113 hgsc.bcm.edu hg19 5 135651458 135651458 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TRPC7 NM_020389 exon3 c.A790T p.R264W ACTTCCTGTAATC . 89.0 24.0 100.0 0.0 . 126 . . Atlas-SNP PCDHA1 56147 hgsc.bcm.edu hg19 5 140165998 140165998 + Missense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PCDHA1 NM_031411 exon1 c.C123A p.H41Q CAAACACGGCACC . 117.0 22.0 93.0 0.0 . 387 . . Atlas-SNP PCDHA2 56146 hgsc.bcm.edu hg19 5 140175983 140175983 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PCDHA2 NM_031495 exon1 c.A1434T p.S478S GGTGTCAGCGTGG . 185.0 36.0 175.0 0.0 . 404 . . Atlas-SNP PCDHA6 56142 hgsc.bcm.edu hg19 5 140208516 140208516 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PCDHA6 NM_018909 exon1 c.T840A p.S280S ATATTCTTTTAAT . 478.0 112.0 353.0 0.0 . 442 . . Atlas-SNP PCDHB5 26167 hgsc.bcm.edu hg19 5 140515388 140515388 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PCDHB5 NM_015669 exon1 c.A372T p.T124T GCTCACAGATATA . 147.0 37.0 126.0 0.0 . 184 . . Atlas-SNP PCDHB6 56130 hgsc.bcm.edu hg19 5 140530514 140530514 + Missense_Mutation SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PCDHB6 NM_018939 exon1 c.G676A p.E226K ACCTCCGAGATTC . 143.0 30.0 116.0 0.0 . 161 . . Atlas-SNP PCDHGA8 9708 hgsc.bcm.edu hg19 5 140773294 140773294 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PCDHGA8 NM_014004 exon1 c.A914T p.K305I TAGCAAAAAGTCT . 260.0 54.0 191.0 0.0 . 146 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150905451 150905451 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 .,2 FAT2 NM_001447 exon17 c.T10384A p.Y3462N ACGAGTAGGGGGG . 73.0 14.0 51.0 0.0 . 465 . . Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169482326 169482326 + Missense_Mutation SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DOCK2 NM_004946 exon42 c.G4231A p.V1411I TTCACTGTCCAGC . 96.0 24.0 75.0 0.0 . 389 . . Atlas-SNP LY86 9450 hgsc.bcm.edu hg19 6 6589096 6589096 + Missense_Mutation SNP G G C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LY86 NM_004271 exon1 c.G129C p.Q43H CTACCAGAGTTGC . 65.0 9.0 49.0 0.0 . 18 . . Atlas-SNP HIST1H4C 8364 hgsc.bcm.edu hg19 6 26104224 26104224 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . HIST1H4C NM_003542 exon1 c.A49T p.K17X GGTGCTAAGCGCC . 72.0 18.0 92.0 0.0 . 14 . . Atlas-SNP HIST1H2BL 8340 hgsc.bcm.edu hg19 6 27775503 27775503 + Missense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . HIST1H2BL NM_003519 exon1 c.G182T p.G61V ATGATTCCCATGG . 142.0 27.0 119.0 0.0 . 48 . . Atlas-SNP OR2H1 26716 hgsc.bcm.edu hg19 6 29429803 29429803 + Missense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OR2H1 NM_030883 exon3 c.C257A p.P86Q GGGGCCCAAAGAA . 74.0 18.0 80.0 0.0 . 38 . . Atlas-SNP GABBR1 2550 hgsc.bcm.edu hg19 6 29574219 29574219 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GABBR1 NM_001470 exon19 c.A2260T p.I754F GCAGAATAGAGAC . 89.0 21.0 76.0 0.0 . 95 . . Atlas-SNP GABBR1 2550 hgsc.bcm.edu hg19 6 29574242 29574242 + Missense_Mutation SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GABBR1 NM_001470 exon19 c.C2237T p.P746L TCCTTAGGTTCCT . 89.0 18.0 77.0 0.0 . 95 . . Atlas-SNP GRM4 2914 hgsc.bcm.edu hg19 6 34003952 34003952 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GRM4 NM_000841 exon9 c.T1935A p.A645A GGGCTCAGCGATC . 82.0 18.0 74.0 0.0 . 317 . . Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38749117 38749117 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DNAH8 NM_001206927 exon16 c.C2227T p.R743C CTCTATCGCCGGA . 240.0 65.0 192.0 0.0 . 1239 . . Atlas-SNP TREML2 79865 hgsc.bcm.edu hg19 6 41162396 41162396 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TREML2 NM_024807 exon3 c.T552A p.P184P GGAGGCAGGTCTG . 138.0 30.0 124.0 0.0 . 41 . . Atlas-SNP NCR2 9436 hgsc.bcm.edu hg19 6 41309624 41309624 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NCR2 NM_004828 exon3 c.A487T p.R163X GGAGCCAGACAAG . 81.0 19.0 44.0 0.0 . 44 . . Atlas-SNP KLC4 89953 hgsc.bcm.edu hg19 6 43038459 43038459 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KLC4 NM_201523 exon8 c.A1065T p.A355A TGTGGCAAAACAG . 154.0 37.0 141.0 0.0 . 89 . . Atlas-SNP TDRD6 221400 hgsc.bcm.edu hg19 6 46661686 46661686 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TDRD6 NM_001168359 exon1 c.A5821T p.R1941X GACATGAGAAAGT . 237.0 60.0 156.0 0.0 . 205 . . Atlas-SNP IL17F 112744 hgsc.bcm.edu hg19 6 52103728 52103728 + Silent SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . IL17F NM_052872 exon2 c.G54A p.S18S CAATATCGACAGC . 129.0 25.0 105.0 0.0 . 28 . . Atlas-SNP COL9A1 1297 hgsc.bcm.edu hg19 6 70942395 70942395 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . COL9A1 NM_001851 exon36 c.T2394A p.P798P GGGACCAGGAGGG . 323.0 67.0 268.0 0.0 . 228 . . Atlas-SNP RIMS1 22999 hgsc.bcm.edu hg19 6 72968769 72968769 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RIMS1 NM_014989 exon18 c.A3008T p.H1003L TTGATCATAGAAC . 99.0 22.0 89.0 0.0 . 278 . . Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75893246 75893246 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . COL12A1 NM_004370 exon10 c.G1411T p.E471X AAATTTCAAAACT . 311.0 75.0 254.0 0.0 . 385 . . Atlas-SNP HTR1E 3354 hgsc.bcm.edu hg19 6 87725224 87725224 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . HTR1E NM_000865 exon2 c.A172T p.N58Y CCTGCCAACTACC . 152.0 30.0 123.0 0.0 . 89 . . Atlas-SNP RNGTT 8732 hgsc.bcm.edu hg19 6 89600237 89600237 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RNGTT NM_003800 exon8 c.A873T p.V291V CCAGCTTACTTTG . 77.0 21.0 61.0 0.0 . 52 . . Atlas-SNP PNISR 25957 hgsc.bcm.edu hg19 6 99849420 99849420 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PNISR NM_015491 exon11 c.A1414T p.R472X CTTCTCTTGCTTC . 70.0 13.0 86.0 0.0 . 74 . . Atlas-SNP DSE 29940 hgsc.bcm.edu hg19 6 116757981 116757981 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DSE NM_001080976 exon6 c.A2350T p.R784X GATAAGAGACAGA . 153.0 33.0 130.0 0.0 . 98 . . Atlas-SNP CTGF 1490 hgsc.bcm.edu hg19 6 132270673 132270673 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CTGF NM_001901 exon5 c.A781T p.K261X AGATTTTGGGAGT . 92.0 19.0 83.0 0.0 . 36 . . Atlas-SNP TAGAP 117289 hgsc.bcm.edu hg19 6 159459160 159459160 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TAGAP NM_054114 exon9 c.A884T p.H295L TCAGTGTGCTCCA . 106.0 20.0 85.0 0.0 . 75 . . Atlas-SNP C6orf118 168090 hgsc.bcm.edu hg19 6 165715248 165715248 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . C6orf118 NM_144980 exon2 c.A563T p.Q188L GCCTCCTGGTAGC . 72.0 19.0 89.0 0.0 . 116 . . Atlas-SNP SDK1 221935 hgsc.bcm.edu hg19 7 3658710 3658710 + Splice_Site SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SDK1 NM_152744 exon2 c.299-2A>T . TATTTCAGATGAT . 125.0 30.0 142.0 0.0 . 361 . . Atlas-SNP KLHL7 55975 hgsc.bcm.edu hg19 7 23164366 23164366 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KLHL7 NM_001172428 exon3 c.A283T p.I95F GATATTATTGAAC . 84.0 33.0 86.0 0.0 . 102 . . Atlas-SNP HOXA10 3206 hgsc.bcm.edu hg19 7 27211677 27211677 + Silent SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . HOXA10 NM_018951 exon2 c.T1074C p.N358N GTACATATTGAAC . 146.0 38.0 124.0 0.0 . 55 . . Atlas-SNP NPSR1 387129 hgsc.bcm.edu hg19 7 34889208 34889208 + Missense_Mutation SNP T T G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 NPSR1,NS,carcinoma,0,1 NPSR1 NM_207172 exon9 c.T1057G p.F353V ATGACGTTCCGGG . 144.0 36.0 145.0 0.0 . 134 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48550698 48550698 + Missense_Mutation SNP G G C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ABCA13 NM_152701 exon51 c.G13543C p.V4515L GTTTCCGTCTGCC . 79.0 18.0 62.0 0.0 . 1192 . . Atlas-SNP COBL 23242 hgsc.bcm.edu hg19 7 51095925 51095925 + Silent SNP G G C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . COBL NM_015198 exon10 c.C2868G p.G956G GTGTGGGCCAATG . 135.0 25.0 108.0 0.0 . 167 . . Atlas-SNP ZNF107 51427 hgsc.bcm.edu hg19 7 64167010 64167010 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZNF107 NM_016220 exon7 c.A328T p.S110C GAATGTAGCAAAT . 178.0 29.0 151.0 0.0 . 107 . . Atlas-SNP LAT2 7462 hgsc.bcm.edu hg19 7 73639059 73639059 + Missense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LAT2 NM_032464 exon13 c.C719A p.A240D TGGCAGCCACAGA . 85.0 23.0 56.0 0.0 . 24 . . Atlas-SNP PTPN12 5782 hgsc.bcm.edu hg19 7 77256052 77256052 + Missense_Mutation SNP A A C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PTPN12 NM_002835 exon13 c.A1056C p.E352D AGAAGAAATACTG . 93.0 25.0 76.0 0.0 . 83 . . Atlas-SNP GNAT3 346562 hgsc.bcm.edu hg19 7 80117908 80117908 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GNAT3 NM_001102386 exon3 c.A246T p.L82L AATAGCTAGGATG . 80.0 18.0 72.0 0.0 . 65 . . Atlas-SNP HGF 3082 hgsc.bcm.edu hg19 7 81331975 81331975 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . HGF NM_000601 exon18 c.T2109A p.P703P AATACCAGGACGA . 357.0 78.0 280.0 0.0 . 171 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82595396 82595396 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PCLO NM_014510 exon4 c.A3708T p.L1236L TTCTTCTAGGAGT . 179.0 41.0 127.0 0.0 . 1506 . . Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94053728 94053728 + Silent SNP T T C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . COL1A2 NM_000089 exon41 c.T2646C p.R882R TGAACGTGGTCTA . 95.0 18.0 72.0 0.0 . 240 . . Atlas-SNP LHFPL3 375612 hgsc.bcm.edu hg19 7 103969251 103969251 + Silent SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 LHFPL3,NS,carcinoma,0,1 LHFPL3 NM_199000 exon1 c.C24T p.A8A CGCTGCCGCCGCC . 45.0 2.0 31.0 1.0 . 24 . . Atlas-SNP CDHR3 222256 hgsc.bcm.edu hg19 7 105653379 105653379 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CDHR3 NM_152750 exon9 c.A1126T p.S376C GATGACAGTGAGG . 135.0 37.0 99.0 0.0 . 153 . . Atlas-SNP WNT2 7472 hgsc.bcm.edu hg19 7 116960675 116960675 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . WNT2 NM_003391 exon2 c.A256T p.N86Y TGCAATTCCAGCG . 91.0 20.0 63.0 0.0 . 56 . . Atlas-SNP NDUFA5 4698 hgsc.bcm.edu hg19 7 123190558 123190558 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NDUFA5 NM_005000 exon3 c.A149T p.Q50L GTAATCTGTTCTG . 76.0 19.0 46.0 0.0 . 6 . . Atlas-SNP METTL2B 55798 hgsc.bcm.edu hg19 7 128141930 128141930 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . METTL2B NM_018396 exon9 c.A1097T p.Q366L GGATTCAGTGCAA . 194.0 36.0 126.0 0.0 . 34 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 131833393 131833393 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PLXNA4 NM_020911 exon26 c.G4673A p.G1558E CCACTTCCTTGTC . 42.0 8.0 53.0 0.0 . 873 . . Atlas-SNP EXOC4 60412 hgsc.bcm.edu hg19 7 133749242 133749242 + Silent SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . EXOC4 NM_021807 exon18 c.C2886A p.I962I TGCCATCAAGCAA . 32.0 8.0 32.0 0.0 . 118 . . Atlas-SNP WDR91 29062 hgsc.bcm.edu hg19 7 134894482 134894482 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . WDR91 NM_014149 exon2 c.A149T p.Q50L AACTGCTGCAGCT . 98.0 24.0 74.0 0.0 . 82 . . Atlas-SNP PRSS58 136541 hgsc.bcm.edu hg19 7 141952124 141952124 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PRSS58 NM_001001317 exon6 c.T643A p.C215S AAACACATCCATC . 149.0 42.0 131.0 0.0 . 41 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3266978 3266978 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CSMD1 NM_033225 exon13 c.A1711T p.N571Y ACTGATTGTTCTG . 92.0 14.0 84.0 0.0 . 1469 . . Atlas-SNP MCPH1 79648 hgsc.bcm.edu hg19 8 6266840 6266840 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MCPH1 NM_001172575 exon2 c.A63T p.T21T TGGAACAGAAAAT . 102.0 17.0 74.0 0.0 . 65 . . Atlas-SNP PTK2B 2185 hgsc.bcm.edu hg19 8 27294711 27294711 + Missense_Mutation SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PTK2B NM_173174 exon21 c.A1414G p.M472V AAGTTCATGAGCG . 83.0 21.0 85.0 0.0 . 304 . . Atlas-SNP EXTL3 2137 hgsc.bcm.edu hg19 8 28574021 28574021 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . EXTL3 NM_001440 exon3 c.A445T p.N149Y GCCCAGAACCAGC . 66.0 16.0 57.0 0.0 . 83 . . Atlas-SNP DUSP4 1846 hgsc.bcm.edu hg19 8 29195843 29195843 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DUSP4 NM_001394 exon3 c.A755T p.K252M TCGGCCTTGTGGT . 115.0 19.0 107.0 0.0 . 58 . . Atlas-SNP KCNU1 157855 hgsc.bcm.edu hg19 8 36768468 36768468 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KCNU1 NM_001031836 exon22 c.A2352T p.G784G TTCTGGAGACCTC . 38.0 13.0 32.0 0.0 . 359 . . Atlas-SNP ST18 9705 hgsc.bcm.edu hg19 8 53044593 53044593 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ST18 NM_014682 exon22 c.A2591T p.Q864L AGCTCTTGTTTGT . 135.0 34.0 114.0 0.0 . 212 . . Atlas-SNP SULF1 23213 hgsc.bcm.edu hg19 8 70501222 70501222 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SULF1 NM_001128205 exon8 c.T580A p.L194I ACAGACTTAATCA . 157.0 28.0 141.0 0.0 . 153 . . Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110439372 110439372 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PKHD1L1 NM_177531 exon25 c.A2987T p.Q996L GAAAGCAGAATCT . 84.0 25.0 103.0 0.0 . 522 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113585883 113585883 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CSMD3 NM_198123 exon24 c.T3889A p.Y1297N CATCATAAATCTG . 81.0 12.0 56.0 0.0 . 2325 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113585884 113585884 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CSMD3 NM_198123 exon24 c.T3888A p.I1296I ATCATAAATCTGC . 80.0 12.0 56.0 0.0 . 2325 . . Atlas-SNP TAF2 6873 hgsc.bcm.edu hg19 8 120809963 120809963 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TAF2 NM_003184 exon7 c.A916T p.T306S AGACAGTCTTAAA . 108.0 37.0 67.0 0.0 . 204 . . Atlas-SNP GSDMC 56169 hgsc.bcm.edu hg19 8 130774950 130774950 + Missense_Mutation SNP C C G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GSDMC NM_031415 exon5 c.G598C p.V200L TCTTCACTCTGAG . 79.0 11.0 41.0 0.0 . 71 . . Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 131896933 131896933 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ADCY8 NM_001115 exon8 c.T1986A p.S662S AGGCCCAGACTGG . 153.0 23.0 118.0 0.0 . 291 . . Atlas-SNP GLI4 2738 hgsc.bcm.edu hg19 8 144358897 144358897 + Missense_Mutation SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GLI4 NM_138465 exon4 c.G1054T p.A352S CCCTTCGCGTGTG . 86.0 25.0 87.0 0.0 . 28 . . Atlas-SNP SLC24A2 25769 hgsc.bcm.edu hg19 9 19786279 19786279 + Missense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SLC24A2 NM_001193288 exon1 c.G586T p.V196L TAAATACCCCTAT . 86.0 17.0 49.0 0.0 . 93 . . Atlas-SNP ANKRD18B 441459 hgsc.bcm.edu hg19 9 33550549 33550549 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ANKRD18B NM_001244752 exon10 c.A2000T p.K667M CTTCAAAGAAGAA . 271.0 68.0 242.0 0.0 . 46 . . Atlas-SNP UBAP2 55833 hgsc.bcm.edu hg19 9 33927030 33927030 + Missense_Mutation SNP T T C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . UBAP2 NM_018449 exon21 c.A2420G p.N807S TACTGGTTGTGCA . 40.0 12.0 52.0 0.0 . 82 . . Atlas-SNP AGTPBP1 23287 hgsc.bcm.edu hg19 9 88247600 88247600 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . AGTPBP1 NM_015239 exon14 c.A1872T p.L624F CCTTTCTAAAATA . 124.0 30.0 84.0 0.0 . 128 . . Atlas-SNP ROR2 4920 hgsc.bcm.edu hg19 9 94486744 94486744 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ROR2 NM_004560 exon9 c.T2032A p.Y678N CACCGTAGGACCA . 74.0 17.0 64.0 0.0 . 167 . . Atlas-SNP ROR2 4920 hgsc.bcm.edu hg19 9 94495465 94495465 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ROR2 NM_004560 exon6 c.T876A p.P292P GCTCTCAGGCATG . 104.0 27.0 88.0 0.0 . 167 . . Atlas-SNP OR1J1 347168 hgsc.bcm.edu hg19 9 125240200 125240200 + Missense_Mutation SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OR1J1 NM_001004451 exon1 c.C6A p.S2R CTCAGGGCTCATG . 121.0 24.0 88.0 0.0 . 46 . . Atlas-SNP RALGDS 5900 hgsc.bcm.edu hg19 9 135977865 135977865 + Silent SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RALGDS NM_006266 exon14 c.C2007T p.S669S TTACTCGCTCCAG . 26.0 4.0 28.0 0.0 . 75 . . Atlas-SNP PTER 9317 hgsc.bcm.edu hg19 10 16547129 16547129 + Missense_Mutation SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PTER NM_030664 exon5 c.A809G p.D270G ATATTGACATGCC . 108.0 26.0 85.0 0.0 . 40 . . Atlas-SNP ANKRD26 22852 hgsc.bcm.edu hg19 10 27306542 27306542 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ANKRD26 NM_014915 exon30 c.A4395T p.I1465I CCTTTCTATATGA . 133.0 33.0 74.0 0.0 . 179 . . Atlas-SNP ANKRD26 22852 hgsc.bcm.edu hg19 10 27337852 27337852 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ANKRD26 NM_014915 exon17 c.A1692T p.I564I ATCATGTATGTTT . 76.0 20.0 53.0 0.0 . 179 . . Atlas-SNP ADAMTS14 140766 hgsc.bcm.edu hg19 10 72434384 72434384 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ADAMTS14 NM_080722 exon2 c.T155A p.F52Y GACGCTTCCTCTC . 35.0 10.0 35.0 0.0 . 148 . . Atlas-SNP ZSWIM8 23053 hgsc.bcm.edu hg19 10 75551724 75551724 + Missense_Mutation SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . . NM_001242488 exon10 c.G1427T p.R476L GCTTCCGGCCAGC . 139.0 29.0 90.0 0.0 . . . . Atlas-SNP KCNMA1 3778 hgsc.bcm.edu hg19 10 79397295 79397295 + Silent SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KCNMA1 NM_001161352 exon1 c.C106T p.L36L CGTCTAGGCTGAG . 352.0 79.0 247.0 0.0 . 370 . . Atlas-SNP OPN4 94233 hgsc.bcm.edu hg19 10 88414684 88414684 + Silent SNP A A C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OPN4 NM_033282 exon1 c.A144C p.T48T TCCCACAGTAAGC . 61.0 13.0 45.0 0.0 . 61 . . Atlas-SNP IDE 3416 hgsc.bcm.edu hg19 10 94267964 94267964 + Splice_Site SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . IDE NM_004969 exon9 c.1061-2A>T . CCAGCCTGCAACA . 283.0 57.0 211.0 0.0 . 77 . . Atlas-SNP NOC3L 64318 hgsc.bcm.edu hg19 10 96116932 96116932 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NOC3L NM_022451 exon4 c.A507T p.P169P CTCACCTGGCTTC . 132.0 24.0 87.0 0.0 . 67 . . Atlas-SNP BTRC 8945 hgsc.bcm.edu hg19 10 103296339 103296339 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . BTRC NM_033637 exon12 c.A1506T p.L502F AGTGTTAGAAGGC . 111.0 21.0 96.0 0.0 . 64 . . Atlas-SNP FAM204A 63877 hgsc.bcm.edu hg19 10 120070409 120070409 + Missense_Mutation SNP T T C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FAM204A NM_001134672 exon8 c.A662G p.K221R CTCTTCTTTGCTT . 56.0 11.0 38.0 0.0 . 20 . . Atlas-SNP RGS10 6001 hgsc.bcm.edu hg19 10 121275042 121275042 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RGS10 NM_001005339 exon4 c.G378A p.M126I CTGGAACATCAGA . 153.0 38.0 119.0 0.0 . 14 . . Atlas-SNP WDR11 55717 hgsc.bcm.edu hg19 10 122650234 122650234 + Missense_Mutation SNP A A C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . WDR11 NM_018117 exon19 c.A2350C p.M784L GTTCAGATGGTGA . 93.0 15.0 77.0 0.0 . 95 . . Atlas-SNP STK32C 282974 hgsc.bcm.edu hg19 10 134022595 134022595 + Missense_Mutation SNP T T C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . STK32C NM_173575 exon11 c.A1262G p.Y421C TGAAGATAGTCAT . 95.0 22.0 77.0 0.0 . 61 . . Atlas-SNP B4GALNT4 338707 hgsc.bcm.edu hg19 11 379652 379652 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . B4GALNT4 NM_178537 exon15 c.A2439T p.P813P CCGGCCACTGCGC . 75.0 19.0 55.0 0.0 . 83 . . Atlas-SNP OR51E1 143503 hgsc.bcm.edu hg19 11 4674516 4674516 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OR51E1 NM_152430 exon2 c.T760A p.Y254N ATATTCTATGTAC . 63.0 19.0 52.0 0.0 . 67 . . Atlas-SNP FAR1 84188 hgsc.bcm.edu hg19 11 13721881 13721881 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FAR1 NM_032228 exon3 c.A207T p.R69S ATTGAGAGATGAA . 322.0 71.0 229.0 0.0 . 40 . . Atlas-SNP MRGPRX1 259249 hgsc.bcm.edu hg19 11 18955672 18955672 + Silent SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MRGPRX1 NM_147199 exon1 c.C660A p.L220L TACTGTGAGCAGG . 70.0 9.0 62.0 0.0 . 84 . . Atlas-SNP CD44 960 hgsc.bcm.edu hg19 11 35223290 35223290 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CD44 NM_000610 exon9 c.A1109T p.H370L TTCACCATGAGCA . 131.0 31.0 91.0 0.0 . 48 . . Atlas-SNP RAG1 5896 hgsc.bcm.edu hg19 11 36595110 36595110 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RAG1 NM_000448 exon2 c.A256T p.K86X CACCCTAAGTTTT . 149.0 40.0 151.0 0.0 . 151 . . Atlas-SNP RAG2 5897 hgsc.bcm.edu hg19 11 36615073 36615073 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RAG2 NM_001243785 exon3 c.A646T p.I216F TATAGATGGTGTC . 86.0 12.0 54.0 0.0 . 92 . . Atlas-SNP CKAP5 9793 hgsc.bcm.edu hg19 11 46819392 46819392 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CKAP5 NM_001008938 exon11 c.A1301T p.K434M AAGCTCTTTGGCA . 280.0 53.0 213.0 0.0 . 134 . . Atlas-SNP FNBP4 23360 hgsc.bcm.edu hg19 11 47744591 47744591 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 FNBP4,NS,carcinoma,0,1 FNBP4 NM_015308 exon15 c.T2742A p.P914P TGGTGGAGGAGGA . 34.0 4.0 46.0 0.0 . 99 . . Atlas-SNP OR5D13 390142 hgsc.bcm.edu hg19 11 55541071 55541071 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OR5D13 NM_001001967 exon1 c.T158A p.L53H TCAGACTCAATTC . 121.0 35.0 138.0 0.0 . 96 . . Atlas-SNP OR5T2 219464 hgsc.bcm.edu hg19 11 56000215 56000215 + Silent SNP T T A rs369632317 alternate_allele TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OR5T2 NM_001004746 exon1 c.A447T p.T149T GCATTCTGTGGTT . 102.0 27.0 93.0 0.0 . 107 . . Atlas-SNP TNKS1BP1 85456 hgsc.bcm.edu hg19 11 57076311 57076311 + Missense_Mutation SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TNKS1BP1 NM_033396 exon6 c.C3874T p.P1292S CCCCTGGGGCCAT . 40.0 6.0 45.0 0.0 . 148 . . Atlas-SNP DTX4 23220 hgsc.bcm.edu hg19 11 58940270 58940270 + Missense_Mutation SNP C C G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DTX4 NM_015177 exon1 c.C202G p.Q68E TTCCGCCAAGACA . 127.0 33.0 106.0 0.0 . 84 . . Atlas-SNP MS4A3 932 hgsc.bcm.edu hg19 11 59828780 59828780 + Missense_Mutation SNP A A C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MS4A3 NM_001031809 exon2 c.A147C p.Q49H ATTACAAGTTCTT . 89.0 16.0 70.0 0.0 . 47 . . Atlas-SNP MS4A14 84689 hgsc.bcm.edu hg19 11 60170383 60170383 + Splice_Site SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MS4A14 NM_001261828 exon4 c.319-2A>T . TCTTTCAGGGTCA . 87.0 15.0 54.0 0.0 . 120 . . Atlas-SNP HRASLS5 117245 hgsc.bcm.edu hg19 11 63235905 63235905 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . HRASLS5 NM_001146728 exon4 c.T408A p.I136I AATCTCAATCAGG . 80.0 9.0 46.0 0.0 . 28 . . Atlas-SNP ARHGEF17 9828 hgsc.bcm.edu hg19 11 73066957 73066957 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ARHGEF17 NM_014786 exon5 c.A3622T p.K1208X ATGATCAAGCCTG . 76.0 15.0 59.0 0.0 . 117 . . Atlas-SNP NAALAD2 10003 hgsc.bcm.edu hg19 11 89911262 89911262 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NAALAD2 NM_005467 exon16 c.T1835A p.L612X AACAATTGACAGA . 127.0 26.0 123.0 0.0 . 113 . . Atlas-SNP MMP20 9313 hgsc.bcm.edu hg19 11 102479781 102479781 + Missense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MMP20 NM_004771 exon5 c.G698T p.G233V GCCAGGCCCAGGG . 109.0 29.0 92.0 0.0 . 52 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105768993 105768993 + Splice_Site SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GRIA4 NM_001077243 exon7 c.727-2A>T . TTTTATAGGGATT . 165.0 35.0 130.0 0.0 . 380 . . Atlas-SNP ANKK1 255239 hgsc.bcm.edu hg19 11 113270966 113270966 + Missense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ANKK1 NM_178510 exon8 c.C2275A p.P759T TCTAAGCCAGGAG . 98.0 26.0 99.0 0.0 . 83 . . Atlas-SNP DRD2 1813 hgsc.bcm.edu hg19 11 113295219 113295219 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DRD2 NM_016574 exon2 c.A155T p.N52I AGCACGTTGCCGA . 85.0 17.0 98.0 0.0 . 98 . . Atlas-SNP DSCAML1 57453 hgsc.bcm.edu hg19 11 117299320 117299320 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DSCAML1 NM_020693 exon33 c.T6066A p.A2022A GGCGGCAGCGGGG . 128.0 24.0 79.0 0.0 . 286 . . Atlas-SNP DSCAML1 57453 hgsc.bcm.edu hg19 11 117375751 117375751 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DSCAML1 NM_020693 exon10 c.T2250A p.P750P AAATCGAGGGGGC . 70.0 10.0 66.0 0.0 . 286 . . Atlas-SNP FOXR1 283150 hgsc.bcm.edu hg19 11 118851924 118851924 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FOXR1 NM_181721 exon6 c.T857A p.M286K ATGTGATGCCCTT . 119.0 21.0 129.0 0.0 . 30 . . Atlas-SNP CACNA1C 775 hgsc.bcm.edu hg19 12 2800241 2800241 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CACNA1C NM_199460 exon50 c.T6542A p.V2181E CCTTTGTGAACTG . 143.0 30.0 117.0 0.0 . 1023 . . Atlas-SNP MFAP5 8076 hgsc.bcm.edu hg19 12 8813492 8813492 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MFAP5 NM_003480 exon3 c.T61A p.W21R GTATCCAGTCTAT . 149.0 31.0 135.0 0.0 . 34 . . Atlas-SNP CNTN1 1272 hgsc.bcm.edu hg19 12 41374784 41374784 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CNTN1 NM_001843 exon16 c.T1878A p.R626R GAGCCGTGGTTCA . 77.0 17.0 71.0 0.0 . 207 . . Atlas-SNP KRT81 3887 hgsc.bcm.edu hg19 12 52680125 52680125 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KRT81 NM_002281 exon9 c.T1432A p.C478S CTCCGCAGGTGGT . 128.0 26.0 136.0 0.0 . 46 . . Atlas-SNP KRT6A 3853 hgsc.bcm.edu hg19 12 52883809 52883809 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KRT6A NM_005554 exon6 c.T1121A p.L374Q TTGCGCAGGTCGT . 106.0 21.0 106.0 0.0 . 89 . . Atlas-SNP AGAP2 116986 hgsc.bcm.edu hg19 12 58127876 58127876 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . AGAP2 NM_001122772 exon5 c.T1482A p.H494Q CTGCCCATGGAGA . 62.0 14.0 69.0 0.0 . 167 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70965670 70965670 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PTPRB NM_001109754 exon12 c.T3040A p.Y1014N CACTGTACAACCG . 112.0 20.0 92.0 0.0 . 676 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70989857 70989857 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PTPRB NM_001109754 exon5 c.T1230A p.S410S TGAAAAAGAACGT . 105.0 20.0 96.0 0.0 . 676 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 80943507 80943507 + Missense_Mutation SNP G G C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PTPRQ NM_001145026 exon22 c.G3763C p.E1255Q CTACCTGAAACAG . 163.0 42.0 129.0 0.0 . 119 . . Atlas-SNP LRRIQ1 84125 hgsc.bcm.edu hg19 12 85466707 85466707 + Silent SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LRRIQ1 NM_001079910 exon11 c.A2718G p.E906E GGAAGAAAAACTT . 121.0 26.0 74.0 0.0 . 512 . . Atlas-SNP KERA 11081 hgsc.bcm.edu hg19 12 91449375 91449375 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KERA NM_007035 exon2 c.A684T p.I228I TTCTGGTATTCCT . 109.0 33.0 103.0 0.0 . 62 . . Atlas-SNP UHRF1BP1L 23074 hgsc.bcm.edu hg19 12 100453136 100453136 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . UHRF1BP1L NM_015054 exon14 c.A1919T p.Y640F CTGGTATATGTTT . 129.0 26.0 85.0 0.0 . 144 . . Atlas-SNP SLC17A8 246213 hgsc.bcm.edu hg19 12 100813686 100813686 + Missense_Mutation SNP C C G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SLC17A8 NM_139319 exon12 c.C1519G p.Q507E GAGAAACAGGAGT . 52.0 9.0 38.0 0.0 . 89 . . Atlas-SNP UTP20 27340 hgsc.bcm.edu hg19 12 101711258 101711258 + Missense_Mutation SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . UTP20 NM_014503 exon22 c.A2555G p.N852S GTAGCAATGAGTA . 94.0 25.0 77.0 0.0 . 222 . . Atlas-SNP KIAA1033 23325 hgsc.bcm.edu hg19 12 105540256 105540256 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KIAA1033 NM_015275 exon23 c.A2361T p.R787S TATGAGAAACATT . 282.0 55.0 241.0 0.0 . 83 . . Atlas-SNP SSH1 54434 hgsc.bcm.edu hg19 12 109186287 109186287 + Silent SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SSH1 NM_001161331 exon13 c.G1701A p.Q567Q CTGGGGCTGTCTG . 73.0 13.0 60.0 0.0 . 144 . . Atlas-SNP UBE3B 89910 hgsc.bcm.edu hg19 12 109968392 109968392 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . UBE3B NM_130466 exon26 c.A2851T p.R951X AGTCACAGAGTCA . 58.0 18.0 50.0 0.0 . 116 . . Atlas-SNP CCDC60 160777 hgsc.bcm.edu hg19 12 119978503 119978503 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CCDC60 NM_178499 exon14 c.T1636A p.Y546N GGGCCCTACAGCG . 45.0 8.0 58.0 0.0 . 84 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124284917 124284917 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DNAH10 NM_207437 exon14 c.A2090T p.Q697L CTCTCCAGGAAGA . 167.0 31.0 140.0 0.0 . 888 . . Atlas-SNP CCDC92 80212 hgsc.bcm.edu hg19 12 124427948 124427948 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CCDC92 NM_025140 exon3 c.A127T p.S43C GCGTGCTGGCATG . 28.0 7.0 37.0 0.0 . 18 . . Atlas-SNP TMEM132B 114795 hgsc.bcm.edu hg19 12 126138935 126138935 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TMEM132B NM_052907 exon9 c.A2916T p.I972I CATGATAGACAGG . 119.0 40.0 62.0 0.0 . 207 . . Atlas-SNP RNF17 56163 hgsc.bcm.edu hg19 13 25374648 25374648 + Missense_Mutation SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RNF17 NM_001184993 exon13 c.G1734T p.L578F CTCATTGAAAGAC . 37.0 11.0 35.0 0.0 . 259 . . Atlas-SNP CPB2 1361 hgsc.bcm.edu hg19 13 46627758 46627758 + Missense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CPB2 NM_001872 exon11 c.G1263T p.R421S AACATTCCTAATG . 138.0 39.0 163.0 0.0 . 60 . . Atlas-SNP SLITRK1 114798 hgsc.bcm.edu hg19 13 84453857 84453857 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SLITRK1 NM_052910 exon1 c.A1786T p.S596C CAGTGCTGTTTTT . 94.0 24.0 100.0 0.0 . 196 . . Atlas-SNP FGF14 2259 hgsc.bcm.edu hg19 13 103053956 103053956 + Missense_Mutation SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FGF14 NM_175929 exon1 c.T73C p.F25L TGAGAAAGAAGAG . 106.0 8.0 91.0 0.0 . 86 . . Atlas-SNP OR11H4 390442 hgsc.bcm.edu hg19 14 20711318 20711318 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OR11H4 NM_001004479 exon1 c.T368A p.L123H AATGTCTCTTTCT . 76.0 23.0 92.0 0.0 . 63 . . Atlas-SNP EDDM3A 10876 hgsc.bcm.edu hg19 14 21215986 21215986 + Missense_Mutation SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . EDDM3A NM_006683 exon2 c.G247A p.E83K ATCAATGAGAAGG . 94.0 24.0 91.0 0.0 . 15 . . Atlas-SNP EFS 10278 hgsc.bcm.edu hg19 14 23828142 23828142 + Silent SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . EFS NM_005864 exon5 c.G1194A p.P398P CTGATCCGGGGGC . 69.0 11.0 59.0 0.0 . 37 . . Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45645010 45645010 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FANCM NM_020937 exon14 c.A3053T p.E1018V CACTTGAGAATTT . 94.0 24.0 105.0 0.0 . 225 . . Atlas-SNP PLEK2 26499 hgsc.bcm.edu hg19 14 67864480 67864480 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PLEK2 NM_016445 exon2 c.T106A p.Y36N GCTTGTAGTACAC . 91.0 19.0 103.0 0.0 . 23 . . Atlas-SNP EML5 161436 hgsc.bcm.edu hg19 14 89105158 89105158 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . EML5 NM_183387 exon31 c.A4331T p.Q1444L CCTACTTGGCCAG . 86.0 16.0 59.0 0.0 . 141 . . Atlas-SNP FBLN5 10516 hgsc.bcm.edu hg19 14 92403334 92403334 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FBLN5 NM_006329 exon4 c.A336T p.I112I GCGGCATATAAGA . 137.0 28.0 98.0 0.0 . 60 . . Atlas-SNP APOPT1 84334 hgsc.bcm.edu hg19 14 104029339 104029339 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . . NM_032374 exon1 c.A40T p.M14L GGGGCCATGGTGG . 42.0 8.0 22.0 0.0 . . . . Atlas-SNP WDR76 79968 hgsc.bcm.edu hg19 15 44120478 44120478 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . WDR76 NM_024908 exon2 c.A376T p.K126X CAACCCAAGAGAA . 89.0 31.0 108.0 0.0 . 34 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54919024 54919024 + Splice_Site SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . UNC13C NM_001080534 exon31 c.6360-2A>T . CCACACAGCATTC . 55.0 17.0 44.0 0.0 . 674 . . Atlas-SNP TSC2 7249 hgsc.bcm.edu hg19 16 2104375 2104375 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TSC2 NM_001114382 exon5 c.A415T p.R139W CACGAAAGGCTGG . 79.0 25.0 84.0 0.0 . 364 . . Atlas-SNP COG7 91949 hgsc.bcm.edu hg19 16 23436070 23436070 + Missense_Mutation SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . COG7 NM_153603 exon7 c.C1009T p.H337Y GTTTACGTAGGTG . 92.0 27.0 112.0 0.0 . 62 . . Atlas-SNP MYLK3 91807 hgsc.bcm.edu hg19 16 46781875 46781875 + Silent SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MYLK3 NM_182493 exon1 c.G231A p.G77G ATCAGCCCCGCCC . 59.0 16.0 57.0 0.0 . 82 . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88494260 88494260 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZNF469 NM_001127464 exon1 c.A382T p.R128W AGCTCGAGGACCA . 65.0 23.0 78.0 0.0 . 121 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577569 7577569 + Missense_Mutation SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 TP53_ENST00000545858,colon,carcinoma,0,2 TP53 NM_000546 exon7 c.T712C p.C238R TGTTACACATGTA . 63.0 27.0 85.0 0.0 . 33396 . . Atlas-SNP FOXN1 8456 hgsc.bcm.edu hg19 17 26861766 26861766 + Missense_Mutation SNP G G C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FOXN1 NM_003593 exon7 c.G1177C p.G393R AAGCTGGGCTCCC . 126.0 25.0 112.0 0.0 . 51 . . Atlas-SNP PIGS 94005 hgsc.bcm.edu hg19 17 26888503 26888503 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 PIGS,NS,carcinoma,0,1 PIGS NM_033198 exon6 c.G613A p.A205T GGTCAGCCAGAGC . 64.0 18.0 60.0 0.0 . 42 . . Atlas-SNP SLC6A4 6532 hgsc.bcm.edu hg19 17 28548654 28548654 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SLC6A4 NM_001045 exon3 c.T323A p.I108K TAACATATGTAGG . 61.0 17.0 70.0 0.0 . 60 . . Atlas-SNP SPACA3 124912 hgsc.bcm.edu hg19 17 31322727 31322727 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SPACA3 NM_173847 exon2 c.T335A p.L112Q ACAGCCTGGCTGA . 119.0 26.0 80.0 0.0 . 35 . . Atlas-SNP FNDC8 54752 hgsc.bcm.edu hg19 17 33454263 33454263 + Missense_Mutation SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FNDC8 NM_017559 exon2 c.G412T p.G138C GCGCTCGGCCCCT . 115.0 17.0 64.0 0.0 . 28 . . Atlas-SNP KRTAP9-9 81870 hgsc.bcm.edu hg19 17 39411680 39411680 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KRTAP9-9 NM_030975 exon1 c.A43T p.R15W TGCTGCAGGACCA . 58.0 16.0 62.0 0.0 . 24 . . Atlas-SNP KRT33B 3884 hgsc.bcm.edu hg19 17 39525975 39525975 + Missense_Mutation SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KRT33B NM_002279 exon1 c.C28A p.L10M AGCTCAGGCTGGG . 150.0 33.0 145.0 0.0 . 46 . . Atlas-SNP DHX8 1659 hgsc.bcm.edu hg19 17 41582192 41582192 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DHX8 NM_004941 exon12 c.A1727T p.Q576L TGGTCCAGGTGAG . 160.0 29.0 103.0 0.0 . 98 . . Atlas-SNP ASB16 92591 hgsc.bcm.edu hg19 17 42249420 42249420 + Missense_Mutation SNP G G C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ASB16 NM_080863 exon2 c.G308C p.W103S GGTTCTGGGTGCT . 50.0 12.0 35.0 0.0 . 34 . . Atlas-SNP SLC4A1 6521 hgsc.bcm.edu hg19 17 42327879 42327879 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SLC4A1 NM_000342 exon20 c.T2683A p.F895I CATCAAAGGTTGC . 53.0 12.0 62.0 0.0 . 104 . . Atlas-SNP SLC4A1 6521 hgsc.bcm.edu hg19 17 42335828 42335828 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 SLC4A1,NS,neuroblastoma,0,1 SLC4A1 NM_000342 exon10 c.A1040T p.Y347F GACTGATAGCGCC . 129.0 31.0 96.0 0.0 . 104 . . Atlas-SNP KCNH6 81033 hgsc.bcm.edu hg19 17 61623092 61623092 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KCNH6 NM_030779 exon14 c.T2814A p.P938P ACAGCCTGAGGGG . 66.0 13.0 89.0 0.0 . 122 . . Atlas-SNP HELZ 9931 hgsc.bcm.edu hg19 17 65186459 65186459 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . HELZ NM_014877 exon10 c.A570T p.Q190H GATTCCTTGTTCT . 142.0 27.0 82.0 0.0 . 160 . . Atlas-SNP KCNJ2 3759 hgsc.bcm.edu hg19 17 68171897 68171897 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KCNJ2 NM_000891 exon2 c.A717T p.E239D TTCTGAAGGGGAG . 91.0 18.0 55.0 0.0 . 74 . . Atlas-SNP LLGL2 3993 hgsc.bcm.edu hg19 17 73566301 73566301 + Silent SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LLGL2 NM_004524 exon15 c.C1839T p.L613L TGGCCTCTTTGAC . 63.0 21.0 64.0 0.0 . 155 . . Atlas-SNP EXOC7 23265 hgsc.bcm.edu hg19 17 74087274 74087274 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . EXOC7 NM_001013839 exon7 c.A851T p.Q284L CCATGCTGGGAAT . 87.0 27.0 106.0 0.0 . 47 . . Atlas-SNP SMCHD1 23347 hgsc.bcm.edu hg19 18 2784472 2784472 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SMCHD1 NM_015295 exon45 c.A5572T p.T1858S TGTCCTACACTGC . 170.0 36.0 144.0 0.0 . 88 . . Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21422660 21422660 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LAMA3 NM_001127717 exon29 c.A3549T p.S1183S CATCTCAGAGCCT . 129.0 33.0 142.0 0.0 . 397 . . Atlas-SNP KLHL14 57565 hgsc.bcm.edu hg19 18 30350114 30350114 + Silent SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KLHL14 NM_020805 exon2 c.G441A p.V147V CAGGGTCACGTTG . 217.0 45.0 157.0 0.0 . 92 . . Atlas-SNP ZBTB7C 201501 hgsc.bcm.edu hg19 18 45566767 45566767 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZBTB7C NM_001039360 exon2 c.A712T p.K238X TGGCCTTGGGGTA . 87.0 17.0 70.0 0.0 . 73 . . Atlas-SNP ZNF532 55205 hgsc.bcm.edu hg19 18 56651265 56651265 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZNF532 NM_018181 exon11 c.C3473T p.A1158V GAGGAGCAATCAC . 285.0 50.0 269.0 0.0 . 108 . . Atlas-SNP CDH20 28316 hgsc.bcm.edu hg19 18 59217403 59217403 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CDH20 NM_031891 exon10 c.C1841T p.P614L TGCTCCCAGTCAG . 67.0 9.0 73.0 0.0 . 117 . . Atlas-SNP CDH19 28513 hgsc.bcm.edu hg19 18 64172081 64172081 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CDH19 NM_021153 exon12 c.A2287T p.M763L CAAACATGCATGC . 96.0 16.0 94.0 0.0 . 141 . . Atlas-SNP CDH19 28513 hgsc.bcm.edu hg19 18 64172083 64172083 + Missense_Mutation SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CDH19 NM_021153 exon12 c.G2285T p.C762F AACATGCATGCTA . 96.0 16.0 94.0 0.0 . 141 . . Atlas-SNP ZNF407 55628 hgsc.bcm.edu hg19 18 72345386 72345386 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZNF407 NM_001146190 exon1 c.A2411T p.Q804L GTGTGCAATTACA . 83.0 16.0 73.0 0.0 . 231 . . Atlas-SNP NFIC 4782 hgsc.bcm.edu hg19 19 3382056 3382056 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NFIC NM_001245004 exon2 c.A377T p.K126M CGGACAAGGTGTG . 88.0 35.0 93.0 0.0 . 36 . . Atlas-SNP C19orf59 199675 hgsc.bcm.edu hg19 19 7743420 7743420 + Silent SNP C C A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . C19orf59 NM_174918 exon5 c.C417A p.G139G GAGAGGCTGGGAT . 104.0 31.0 94.0 0.0 . 15 . . Atlas-SNP OR7E24 26648 hgsc.bcm.edu hg19 19 9361792 9361792 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . OR7E24 NM_001079935 exon1 c.A73T p.T25S AATCTCACAGGTG . 43.0 9.0 36.0 0.0 . 48 . . Atlas-SNP CD97 976 hgsc.bcm.edu hg19 19 14507927 14507927 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CD97 NM_078481 exon6 c.A517T p.S173C TGCCACAGCTCCA . 72.0 21.0 97.0 0.0 . 86 . . Atlas-SNP CYP4F12 66002 hgsc.bcm.edu hg19 19 15794357 15794357 + Silent SNP A A G rs376069087 alternate_allele TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CYP4F12 NM_023944 exon7 c.A702G p.K234K AGAGAAAAGAAGC . 107.0 23.0 53.0 0.0 . 89 . . Atlas-SNP COLGALT1 79709 hgsc.bcm.edu hg19 19 17678227 17678227 + Missense_Mutation SNP G G C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . . NM_024656 exon4 c.G502C p.D168H GATGCGGACAACC . 91.0 16.0 45.0 0.0 . . . . Atlas-SNP ATP13A1 57130 hgsc.bcm.edu hg19 19 19766889 19766889 + Missense_Mutation SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ATP13A1 NM_020410 exon8 c.C1187T p.P396L TTCTGTGGGGGGA . 39.0 7.0 32.0 0.0 . 82 . . Atlas-SNP ZFP14 57677 hgsc.bcm.edu hg19 19 36832052 36832052 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZFP14 NM_020917 exon5 c.A676T p.K226X AGGGTTTCTCACC . 72.0 21.0 57.0 0.0 . 68 . . Atlas-SNP GGN 199720 hgsc.bcm.edu hg19 19 38877316 38877316 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GGN NM_152657 exon3 c.G586A p.A196T GTGAGGCGGGTGT . 78.0 20.0 76.0 0.0 . 50 . . Atlas-SNP DLL3 10683 hgsc.bcm.edu hg19 19 39998581 39998581 + Silent SNP A A T rs199745659 alternate_allele TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DLL3 NM_016941 exon8 c.A1785T p.L595L CCCGCTACACACT . 94.0 15.0 77.0 0.0 . 47 . A|0.999;G|0.001 Atlas-SNP CEACAM4 1089 hgsc.bcm.edu hg19 19 42132079 42132079 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CEACAM4 NM_001817 exon2 c.T320A p.L107Q AACAGCAGGGATC . 162.0 39.0 120.0 0.0 . 42 . . Atlas-SNP ZNF226 7769 hgsc.bcm.edu hg19 19 44676286 44676286 + Nonsense_Mutation SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . . NM_015919 exon4 c.G61T p.E21X GAGGAGGAATTGG . 74.0 12.0 74.0 0.0 . . . . Atlas-SNP CBLC 23624 hgsc.bcm.edu hg19 19 45303670 45303670 + Silent SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CBLC NM_012116 exon10 c.G1395T p.A465A AGCTGCGCTGGGA . 165.0 30.0 161.0 0.0 . 41 . . Atlas-SNP MYBPC2 4606 hgsc.bcm.edu hg19 19 50962198 50962198 + Missense_Mutation SNP C C A rs202035202 bycluster;alternate_allele TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MYBPC2 NM_004533 exon22 c.C2530A p.R844S CTTCCCCGCCATC . 106.0 31.0 104.0 0.0 . 103 . . Atlas-SNP SYT3 84258 hgsc.bcm.edu hg19 19 51129240 51129240 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SYT3 NM_032298 exon5 c.T1316A p.L439H TAGCAGAGTGAGA . 121.0 23.0 102.0 0.0 . 85 . . Atlas-SNP KLK6 5653 hgsc.bcm.edu hg19 19 51470458 51470458 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . KLK6 NM_001012964 exon3 c.T164A p.L55Q ACCCACAGTGGAT . 135.0 27.0 92.0 0.0 . 35 . . Atlas-SNP VSIG10L 147645 hgsc.bcm.edu hg19 19 51841247 51841247 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . VSIG10L NM_001163922 exon6 c.G1945A p.G649R AATTTCCCAGGTC . 83.0 16.0 62.0 0.0 . 40 . . Atlas-SNP HAS1 3036 hgsc.bcm.edu hg19 19 52222631 52222631 + Missense_Mutation SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . HAS1 NM_001523 exon2 c.C530T p.A177V CCCACCGCGCCCG . 107.0 25.0 106.0 0.0 . 61 . . Atlas-SNP ZNF880 400713 hgsc.bcm.edu hg19 19 52888535 52888535 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZNF880 NM_001145434 exon4 c.A1702T p.R568X CATCACAGAATCC . 177.0 39.0 163.0 0.0 . 45 . . Atlas-SNP LENG8 114823 hgsc.bcm.edu hg19 19 54965762 54965762 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LENG8 NM_052925 exon6 c.A580T p.S194C CAGCACAGCCAGG . 144.0 22.0 119.0 0.0 . 73 . . Atlas-SNP NLRP13 126204 hgsc.bcm.edu hg19 19 56413554 56413554 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NLRP13 NM_176810 exon9 c.T2636A p.L879Q GCTGCCAGCTGGC . 39.0 7.0 43.0 0.0 . 220 . . Atlas-SNP NLRP5 126206 hgsc.bcm.edu hg19 19 56520164 56520164 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NLRP5 NM_153447 exon3 c.A453T p.P151P TTCACCAGAAGAT . 105.0 21.0 78.0 0.0 . 217 . . Atlas-SNP ZNF835 90485 hgsc.bcm.edu hg19 19 57176467 57176467 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZNF835 NM_001005850 exon2 c.T100A p.C34S CTGGACAGCTTTC . 80.0 10.0 81.0 0.0 . 106 . . Atlas-SNP ZNF135 7694 hgsc.bcm.edu hg19 19 58571397 58571397 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZNF135 NM_003436 exon2 c.A27T p.T9T CTCCACAGACCCG . 65.0 16.0 53.0 0.0 . 159 . . Atlas-SNP ADAM33 80332 hgsc.bcm.edu hg19 20 3652923 3652923 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ADAM33 NM_025220 exon14 c.T1455A p.P485P AAACTCAGGGAGG . 119.0 29.0 94.0 0.0 . 76 . . Atlas-SNP FERMT1 55612 hgsc.bcm.edu hg19 20 6064810 6064810 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FERMT1 NM_017671 exon13 c.T1595A p.L532Q GCGGCCAGCTGAA . 41.0 11.0 33.0 0.0 . 106 . . Atlas-SNP SEC23B 10483 hgsc.bcm.edu hg19 20 18534971 18534971 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SEC23B NM_032985 exon18 c.A2085T p.Q695H TGCTCAAGAAATT . 85.0 19.0 80.0 0.0 . 70 . . Atlas-SNP RALGAPA2 57186 hgsc.bcm.edu hg19 20 20601245 20601245 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RALGAPA2 NM_020343 exon11 c.T1263A p.A421A TGTTACAGCTATC . 101.0 25.0 102.0 0.0 . 274 . . Atlas-SNP ID1 3397 hgsc.bcm.edu hg19 20 30193298 30193298 + Silent SNP T T C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ID1 NM_002165 exon1 c.T108C p.S36S TCTGTCTGAGCAG . 76.0 20.0 76.0 0.0 . 12 . . Atlas-SNP R3HDML 140902 hgsc.bcm.edu hg19 20 42966048 42966048 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . R3HDML NM_178491 exon1 c.T251A p.M84K CCAACATGGAATA . 130.0 34.0 108.0 0.0 . 33 . . Atlas-SNP WISP2 8839 hgsc.bcm.edu hg19 20 43355869 43355869 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . WISP2 NM_003881 exon4 c.T674A p.L225Q GCCGACTGGAGAC . 31.0 7.0 48.0 0.0 . 28 . . Atlas-SNP SEMG1 6406 hgsc.bcm.edu hg19 20 43836884 43836884 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SEMG1 NM_003007 exon2 c.A946T p.S316C ATTTATAGCCAAA . 427.0 98.0 305.0 0.0 . 71 . . Atlas-SNP PARD6B 84612 hgsc.bcm.edu hg19 20 49366413 49366413 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PARD6B NM_032521 exon3 c.A507T p.L169L ACCCCTAGGATTC . 195.0 52.0 158.0 0.0 . 31 . . Atlas-SNP TMPRSS15 5651 hgsc.bcm.edu hg19 21 19666925 19666925 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TMPRSS15 NM_002772 exon20 c.A2306T p.H769L CATTTATGGTTAC . 348.0 80.0 271.0 0.0 . 189 . . Atlas-SNP LTN1 26046 hgsc.bcm.edu hg19 21 30341864 30341864 + Missense_Mutation SNP A A C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . LTN1 NM_015565 exon9 c.T1373G p.F458C TCAAAAAAAGCAG . 81.0 18.0 71.0 0.0 . 141 . . Atlas-SNP SEZ6L 23544 hgsc.bcm.edu hg19 22 26707784 26707784 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SEZ6L NM_021115 exon8 c.A1732T p.T578S AACTTCACTACAT . 120.0 33.0 130.0 0.0 . 174 . . Atlas-SNP SLC5A1 6523 hgsc.bcm.edu hg19 22 32480985 32480985 + Missense_Mutation SNP G G A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SLC5A1 NM_000343 exon9 c.G984A p.M328I CATCATGGTGATG . 94.0 20.0 79.0 0.0 . 80 . . Atlas-SNP FAM227A 646851 hgsc.bcm.edu hg19 22 39016298 39016298 + Splice_Site SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . . NM_001013647 exon12 c.959-2A>T . TCTCCCTATAGAA . 69.0 13.0 53.0 0.0 . . . . Atlas-SNP TOMM22 56993 hgsc.bcm.edu hg19 22 39078326 39078326 + Splice_Site SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TOMM22 NM_020243 exon2 c.118-2A>T . CACCACAGCTAGA . 57.0 13.0 74.0 0.0 . 10 . . Atlas-SNP TNRC6B 23112 hgsc.bcm.edu hg19 22 40708618 40708618 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TNRC6B NM_001162501 exon18 c.A4545T p.V1515V CATTGTAGATACT . 82.0 18.0 68.0 0.0 . 195 . . Atlas-SNP CLCN4 1183 hgsc.bcm.edu hg19 X 10166045 10166045 + Missense_Mutation SNP G G C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CLCN4 NM_001830 exon6 c.G499C p.A167P TTTTTGGCTGTCT . 141.0 34.0 99.0 0.0 . 84 . . Atlas-SNP FRMPD4 9758 hgsc.bcm.edu hg19 X 12735864 12735864 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . FRMPD4 NM_014728 exon16 c.T2919A p.A973A GGCTGCTAGGCCA . 234.0 65.0 204.0 0.0 . 214 . . Atlas-SNP CDKL5 6792 hgsc.bcm.edu hg19 X 18606148 18606148 + Missense_Mutation SNP T T C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CDKL5 NM_003159 exon9 c.T629C p.L210S AGCCTTTATTTCC . 225.0 53.0 187.0 0.0 . 124 . . Atlas-SNP MAGEB3 4114 hgsc.bcm.edu hg19 X 30254845 30254845 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MAGEB3 NM_002365 exon5 c.T804A p.P268P TAATCCTGCACGC . 346.0 84.0 252.0 0.0 . 54 . . Atlas-SNP CXorf30 645090 hgsc.bcm.edu hg19 X 36379611 36379611 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CXorf30 NM_001098843 exon16 c.A1356T p.P452P GAAACCATTAAGG . 624.0 132.0 531.0 0.0 . 76 . . Atlas-SNP PRRG1 5638 hgsc.bcm.edu hg19 X 37285109 37285109 + Silent SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PRRG1 NM_001173490 exon3 c.A27G p.E9E GGGAGAAAAAGCC . 677.0 151.0 549.0 0.0 . 42 . . Atlas-SNP RPGR 6103 hgsc.bcm.edu hg19 X 38145017 38145017 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . RPGR NM_001034853 exon15 c.A3235T p.R1079W CCTGCCTTTCATT . 115.0 20.0 86.0 0.0 . 175 . . Atlas-SNP MAOB 4129 hgsc.bcm.edu hg19 X 43656381 43656381 + Missense_Mutation SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . MAOB NM_000898 exon6 c.T609A p.N203K TCCTCCATTTGTT . 88.0 22.0 68.0 0.0 . 52 . . Atlas-SNP SSX1 6756 hgsc.bcm.edu hg19 X 48123234 48123234 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . SSX1 NM_005635 exon6 c.A348T p.P116P GAAGCCAGCAGAG . 518.0 110.0 444.0 0.0 . 27 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53619443 53619443 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . HUWE1 NM_031407 exon33 c.A3887T p.E1296V GACCCCTCCTTCT . 62.0 12.0 66.0 0.0 . 724 . . Atlas-SNP TRO 7216 hgsc.bcm.edu hg19 X 54956640 54956640 + Silent SNP T T C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TRO NM_001039705 exon12 c.T3483C p.S1161S TGGCAGTGCATCT . 93.0 28.0 101.0 0.0 . 246 . . Atlas-SNP TEX11 56159 hgsc.bcm.edu hg19 X 69749740 69749740 + Missense_Mutation SNP A A C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TEX11 NM_001003811 exon30 c.T2675G p.L892R AAGGCCAGGCCAC . 89.0 18.0 76.0 0.0 . 132 . . Atlas-SNP TEX11 56159 hgsc.bcm.edu hg19 X 69964041 69964041 + Missense_Mutation SNP T T C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . TEX11 NM_001003811 exon11 c.A766G p.K256E ATTTCTTATCCAT . 627.0 121.0 454.0 0.0 . 132 . . Atlas-SNP IL2RG 3561 hgsc.bcm.edu hg19 X 70330769 70330769 + Missense_Mutation SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . IL2RG NM_000206 exon2 c.A247T p.T83S GGTTGGTAGGCTG . 171.0 42.0 149.0 0.0 . 96 . . Atlas-SNP CXCR3 2833 hgsc.bcm.edu hg19 X 70836820 70836820 + Missense_Mutation SNP C C T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . CXCR3 NM_001142797 exon2 c.G643A p.V215M GGGTCACGCGGGC . 254.0 61.0 248.0 0.0 . 57 . . Atlas-SNP PCDH11X 27328 hgsc.bcm.edu hg19 X 91132904 91132904 + Silent SNP A A T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PCDH11X NM_001168363 exon2 c.A1665T p.T555T TGTCACAGTCTTT . 324.0 86.0 268.0 0.0 . 714 . . Atlas-SNP DCX 1641 hgsc.bcm.edu hg19 X 110644314 110644314 + Silent SNP T T A novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . DCX NM_000555 exon3 c.A852T p.T284T GTGGGCTGTCTTC . 137.0 28.0 114.0 0.0 . 158 . . Atlas-SNP ZNF75D 7626 hgsc.bcm.edu hg19 X 134425482 134425482 + Silent SNP A A G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . ZNF75D NM_007131 exon4 c.T612C p.H204H TTGATCATGCACA . 180.0 45.0 133.0 0.0 . 65 . . Atlas-SNP PLXNB3 5365 hgsc.bcm.edu hg19 X 153042749 153042749 + Missense_Mutation SNP G G T novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . PLXNB3 NM_001163257 exon31 c.G5083T p.V1695L GCCAAGGTGCGGT . 156.0 29.0 110.0 0.0 . 208 . . Atlas-SNP ND6 0 hgsc.bcm.edu hg19 MT 14459 14459 + Missense_Mutation SNP G G C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . . ENST00000361681 exon1 c.C215G p.A72G GCCATCGCTGTAG . 67.0 7.0 26.0 0.0 . . . . Atlas-SNP GRM3 2913 hgsc.bcm.edu hg19 7 86394697 86394698 + Frame_Shift_Ins INS - - C novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . GRM3 NM_000840 exon2 c.236_237insC p.I79fs . . 118.0 31.0 85.0 0.0 . 237 . . Atlas-INDEL NEK11 79858 hgsc.bcm.edu hg19 3 130871532 130871543 + In_Frame_Del DEL TTACCTTGATGA TTACCTTGATGA - novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 TTACCTTGATGA TTACCTTGATGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 . NEK11 NM_024800 exon9 c.854_865del p.285_289del . . 207.0 28.0 173.0 0.0 . 76 . . Atlas-INDEL COBL 23242 hgsc.bcm.edu hg19 7 51287561 51287562 + Frame_Shift_Ins INS - - G novel TCGA-DD-AACL-01A-11D-A40R-10 TCGA-DD-AACL-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2b9cdb07-82ec-42bb-9de0-6329a096b64a 799314ef-97a0-4db6-ac6c-f820a0294be9 .,1 COBL NM_015198 exon2 c.122_123insC p.H41fs . . 169.0 30.0 136.0 0.0 . 167 . . Atlas-INDEL