Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CCNL2	81669	hgsc.bcm.edu	hg19	1	1334013	1334013	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	CCNL2_ENST00000408918,NS,carcinoma,0,2	CCNL2	NM_030937	exon2	c.C327T	p.F109F	ATAAAAGAACCGC	.	146.0	83.0	214.0	2.0	.	54	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16255901	16255901	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	SPEN	NM_015001	exon11	c.A3166T	p.R1056X	CTGGACAGACTTA	.	182.0	69.0	190.0	0.0	.	374	.	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	hg19	1	19464665	19464665	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	UBR4	NM_020765	exon60	c.G8742T	p.R2914R	ACTGCTCCGGCCA	.	49.0	23.0	33.0	0.0	.	415	.	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	hg19	1	22201403	22201403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	HSPG2	NM_005529	exon26	c.A3395T	p.Y1132F	CCACGGTACCCGG	.	153.0	60.0	164.0	0.0	.	311	.	.	Atlas-SNP
ZMYM6	9204	hgsc.bcm.edu	hg19	1	35452801	35452801	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ZMYM6	NM_007167	exon16	c.A3882T	p.S1294S	TTGTTTTGACTCA	.	50.0	11.0	50.0	0.0	.	110	.	.	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	hg19	1	35851192	35851192	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ZMYM4	NM_005095	exon10	c.A1719T	p.A573A	TTCTGCAGGTAAT	.	73.0	29.0	67.0	0.0	.	143	.	.	Atlas-SNP
CYP4B1	1580	hgsc.bcm.edu	hg19	1	47278193	47278193	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CYP4B1	NM_000779	exon4	c.G393T	p.G131G	TGAGGGGCCCAAG	.	80.0	30.0	94.0	0.0	.	81	.	.	Atlas-SNP
AGBL4	84871	hgsc.bcm.edu	hg19	1	50317108	50317108	+	Silent	SNP	G	G	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	AGBL4	NM_032785	exon2	c.C117G	p.P39P	TTTCTTGGGCTGT	.	212.0	74.0	215.0	0.0	.	54	.	.	Atlas-SNP
FOXD3	27022	hgsc.bcm.edu	hg19	1	63789824	63789824	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	FOXD3	NM_012183	exon1	c.G1095A	p.A365A	CACCGCGTCGCTC	.	12.0	6.0	19.0	0.0	.	15	.	.	Atlas-SNP
SLC44A5	204962	hgsc.bcm.edu	hg19	1	75672389	75672389	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	SLC44A5,NS,carcinoma,0,1	SLC44A5	NM_152697	exon24	c.G2063C	p.R688T	TCATTTCTTTCCA	.	39.0	18.0	57.0	0.0	.	231	.	.	Atlas-SNP
ODF2L	57489	hgsc.bcm.edu	hg19	1	86822189	86822189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ODF2L	NM_001007022	exon14	c.C1456A	p.L486M	ACTGCAGACTCTC	.	70.0	25.0	41.0	0.0	.	53	.	.	Atlas-SNP
GBP2	2634	hgsc.bcm.edu	hg19	1	89587483	89587483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	GBP2	NM_004120	exon2	c.A167G	p.N56S	AGCTTGTTCATCA	.	93.0	32.0	118.0	0.0	.	58	.	.	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	hg19	1	117120047	117120047	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	IGSF3	NM_001542	exon12	c.T3532A	p.S1178T	CATCAGAGTTCTT	.	160.0	67.0	172.0	0.0	.	294	.	.	Atlas-SNP
ISG20L2	81875	hgsc.bcm.edu	hg19	1	156696883	156696883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ISG20L2	NM_030980	exon1	c.G562A	p.G188S	CTGTGCCCACCAT	.	154.0	61.0	151.0	0.0	.	43	.	.	Atlas-SNP
F11R	50848	hgsc.bcm.edu	hg19	1	160970507	160970507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	F11R	NM_016946	exon4	c.G302C	p.R101P	TCTTCCCGTGTCA	.	107.0	35.0	82.0	0.0	.	29	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181725136	181725136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	CACNA1E_ENST00000367573,NS,carcinoma,0,2	CACNA1E	NM_001205293	exon29	c.G4034T	p.G1345V	TGAAGGGCCGGGA	.	137.0	46.0	155.0	0.0	.	778	.	.	Atlas-SNP
AFTPH	54812	hgsc.bcm.edu	hg19	2	64796244	64796244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	AFTPH	NM_017657	exon4	c.G2106T	p.W702C	TGTGTGGACTGAG	.	100.0	39.0	85.0	0.0	.	117	.	.	Atlas-SNP
CCDC93	54520	hgsc.bcm.edu	hg19	2	118735578	118735578	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CCDC93	NM_019044	exon8	c.A649T	p.M217L	TCTCCATTTTGCT	.	64.0	28.0	52.0	0.0	.	70	.	.	Atlas-SNP
MARCO	8685	hgsc.bcm.edu	hg19	2	119752067	119752067	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MARCO	NM_006770	exon17	c.G1534T	p.E512X	CACGAGGAGGACG	.	56.0	16.0	65.0	0.0	.	120	.	.	Atlas-SNP
MCM6	4175	hgsc.bcm.edu	hg19	2	136622693	136622693	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MCM6	NM_005915	exon7	c.A968T	p.E323V	ATGCTCTCAGCTG	.	55.0	19.0	54.0	0.0	.	64	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152529088	152529088	+	Missense_Mutation	SNP	T	T	A	rs375155384		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	NEB	NM_004543	exon37	c.A4094T	p.Q1365L	TCAGACTGCAGCT	.	91.0	45.0	98.0	0.0	.	1697	.	.	Atlas-SNP
DHRS9	10170	hgsc.bcm.edu	hg19	2	169940058	169940058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	DHRS9	NM_005771	exon6	c.C533T	p.P178L	ATACTCCATCCAA	.	95.0	34.0	52.0	0.0	.	29	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179472543	179472543	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	TTN	NM_001267550	exon276	c.A52971T	p.E17657D	TTGTGTTTCTCCA	.	55.0	19.0	51.0	0.0	.	18412	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196749353	196749353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	DNAH7	NM_018897	exon35	c.T5719A	p.F1907I	CAGGAAATGGGAC	.	114.0	42.0	99.0	0.0	.	512	.	.	Atlas-SNP
ORC2	4999	hgsc.bcm.edu	hg19	2	201791508	201791508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ORC2	NM_006190	exon12	c.G1033A	p.G345R	TGATTCCAGGAAA	.	87.0	42.0	71.0	0.0	.	48	.	.	Atlas-SNP
STK36	27148	hgsc.bcm.edu	hg19	2	219564008	219564008	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	STK36	NM_015690	exon26	c.A3741T	p.P1247P	CCAGCCAAATGTG	.	118.0	48.0	114.0	0.0	.	111	.	.	Atlas-SNP
DNER	92737	hgsc.bcm.edu	hg19	2	230312104	230312104	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	DNER	NM_139072	exon8	c.T1414A	p.C472S	GGGCACAGAAGTC	.	326.0	113.0	314.0	0.0	.	129	.	.	Atlas-SNP
GIGYF2	26058	hgsc.bcm.edu	hg19	2	233708845	233708845	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	GIGYF2	NM_001103147	exon26	c.C3042G	p.S1014R	TGTCAGCAAACCT	.	274.0	86.0	260.0	0.0	.	288	.	.	Atlas-SNP
RBM44	375316	hgsc.bcm.edu	hg19	2	238727032	238727032	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	RBM44	NM_001080504	exon3	c.A1473G	p.V491V	TTCTGTAGTATCT	.	211.0	91.0	246.0	0.0	.	167	.	.	Atlas-SNP
DYNC1LI1	51143	hgsc.bcm.edu	hg19	3	32568308	32568308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	DYNC1LI1,NS,carcinoma,0,1	DYNC1LI1	NM_016141	exon13	c.G1555A	p.E519K	CTCCTTCCGTAGG	.	130.0	10.0	135.0	0.0	.	23	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	CTNNB1,colon,carcinoma,-1,11	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	104.0	41.0	110.0	0.0	.	4904	.	.	Atlas-SNP
CD200R1	131450	hgsc.bcm.edu	hg19	3	112693693	112693693	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CD200R1	NM_138806	exon1	c.T12A	p.P4P	TCTCCAAGGGCAG	.	84.0	30.0	84.0	0.0	.	91	.	.	Atlas-SNP
MRPL47	57129	hgsc.bcm.edu	hg19	3	179311574	179311574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MRPL47	NM_020409	exon5	c.A512T	p.D171V	AAGATGTCTCTTC	.	73.0	28.0	76.0	0.0	.	31	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5642462	5642462	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	EVC2	NM_147127	exon10	c.A1249T	p.S417C	GGCCACTGCTGGT	.	76.0	25.0	89.0	0.0	.	202	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74277801	74277801	+	Missense_Mutation	SNP	G	G	A	rs78340021	alternate_allele	TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ALB	NM_000477	exon7	c.G802A	p.E268K	CACACGGAATGCT	.	89.0	31.0	105.0	0.0	.	132	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79328978	79328978	+	Missense_Mutation	SNP	G	G	A	rs371136161		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	FRAS1	NM_001166133	exon31	c.G4291A	p.D1431N	CAGAGCGACTCCT	.	188.0	66.0	150.0	0.0	.	779	.	.	Atlas-SNP
PLAC8	51316	hgsc.bcm.edu	hg19	4	84026085	84026085	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	PLAC8	NM_001130716	exon3	c.A207G	p.A69A	CCTCATTGCGACG	.	217.0	83.0	228.0	0.0	.	17	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85781608	85781608	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	WDFY3	NM_014991	exon4	c.A137T	p.E46V	TCTTGTTCCTTCT	.	104.0	35.0	94.0	0.0	.	314	.	.	Atlas-SNP
GYPB	2994	hgsc.bcm.edu	hg19	4	144920597	144920597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	GYPB	NM_002100	exon3	c.A142T	p.T48S	GTCCCGTTTCTCC	.	439.0	181.0	423.0	0.0	.	17	.	.	Atlas-SNP
NR3C2	4306	hgsc.bcm.edu	hg19	4	149357529	149357529	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	NR3C2	NM_001166104	exon2	c.A484T	p.R162X	ATGATCTCAAGGG	.	51.0	14.0	46.0	0.0	.	94	.	.	Atlas-SNP
LRBA	987	hgsc.bcm.edu	hg19	4	151935691	151935691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	LRBA	NM_006726	exon2	c.T104C	p.L35P	GGTTTCAGAGACA	.	167.0	64.0	148.0	0.0	.	253	.	.	Atlas-SNP
MTNR1A	4543	hgsc.bcm.edu	hg19	4	187454913	187454913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MTNR1A	NM_005958	exon2	c.C983A	p.A328D	CTATCGGCCACGT	.	138.0	12.0	155.0	0.0	.	46	.	.	Atlas-SNP
BASP1	10409	hgsc.bcm.edu	hg19	5	17275577	17275577	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	BASP1	NM_006317	exon2	c.G252A	p.K84K	CCCGAAGGCGGAG	.	107.0	38.0	101.0	0.0	.	29	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128994333	128994333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ADAMTS19	NM_133638	exon15	c.A2310C	p.L770F	TTTATTAGGGTCT	.	75.0	23.0	77.0	0.0	.	216	.	.	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	hg19	5	148406144	148406144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	SH3TC2	NM_024577	exon12	c.A3044G	p.N1015S	GCGGTATTTAGGT	.	109.0	33.0	124.0	0.0	.	178	.	.	Atlas-SNP
PNPLA1	285848	hgsc.bcm.edu	hg19	6	36269664	36269664	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	PNPLA1	NM_001145717	exon6	c.A802T	p.K268X	TCCTCCAAGAGAG	.	80.0	22.0	76.0	0.0	.	92	.	.	Atlas-SNP
FAM135A	57579	hgsc.bcm.edu	hg19	6	71185406	71185406	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	FAM135A	NM_001162529	exon5	c.T338A	p.L113X	TATCCTTGGATCT	.	105.0	41.0	130.0	0.0	.	181	.	.	Atlas-SNP
EEF1A1	1915	hgsc.bcm.edu	hg19	6	74228303	74228303	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	EEF1A1	NM_001402	exon6	c.A803T	p.E268V	CCAGTCTCCACTC	.	317.0	98.0	280.0	0.0	.	56	.	.	Atlas-SNP
PHIP	55023	hgsc.bcm.edu	hg19	6	79679863	79679863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	PHIP	NM_017934	exon26	c.A3025G	p.I1009V	ACTTTATGCCAAC	.	62.0	22.0	74.0	0.0	.	177	.	.	Atlas-SNP
FBXL4	26235	hgsc.bcm.edu	hg19	6	99353398	99353398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	FBXL4	NM_012160	exon5	c.C1007T	p.S336F	TCCAGAGAAGTGT	.	107.0	31.0	133.0	0.0	.	54	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129813106	129813106	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	LAMA2	NM_000426	exon57	c.G7959A	p.Q2653Q	TGAACAGCCTATC	.	112.0	41.0	111.0	0.0	.	481	.	.	Atlas-SNP
SNX8	29886	hgsc.bcm.edu	hg19	7	2309216	2309216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	SNX8	NM_013321	exon5	c.G599A	p.C200Y	AGCTTACAGTTCA	.	40.0	16.0	39.0	0.0	.	46	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5385411	5385411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	TNRC18	NM_001080495	exon18	c.A5501T	p.E1834V	AGCTCCTCCTCCT	.	59.0	28.0	56.0	0.0	.	311	.	.	Atlas-SNP
CCT6A	908	hgsc.bcm.edu	hg19	7	56125786	56125786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CCT6A	NM_001762	exon6	c.T715C	p.Y239H	TTAGAGTATGAGA	.	82.0	33.0	69.0	0.0	.	44	.	.	Atlas-SNP
WBSCR17	64409	hgsc.bcm.edu	hg19	7	71130560	71130560	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	WBSCR17	NM_022479	exon7	c.A1245T	p.I415I	GTACATAGCGTGG	.	66.0	26.0	78.0	0.0	.	208	.	.	Atlas-SNP
AKR1D1	6718	hgsc.bcm.edu	hg19	7	137761312	137761312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	AKR1D1	NM_001190907	exon1	c.C48A	p.N16K	TGGAAACAGCATT	.	91.0	33.0	86.0	0.0	.	52	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149493829	149493829	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	.	NM_198455	exon45	c.T6825A	p.T2275T	GGGCACTGGCAGG	.	71.0	33.0	78.0	0.0	.	.	.	.	Atlas-SNP
BAG4	9530	hgsc.bcm.edu	hg19	8	38065143	38065143	+	Silent	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	BAG4	NM_004874	exon3	c.T492C	p.S164S	GACCAGTTACTCC	.	89.0	43.0	109.0	0.0	.	32	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52323892	52323892	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	PXDNL	NM_144651	exon16	c.A1980C	p.R660S	CCCTGCTCTTGCC	.	116.0	55.0	115.0	0.0	.	414	.	.	Atlas-SNP
VLDLR	7436	hgsc.bcm.edu	hg19	9	2643403	2643403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	VLDLR,NS,carcinoma,0,2	VLDLR	NM_003383	exon5	c.G692A	p.R231H	GTGGCCGTCAGCC	.	82.0	31.0	86.0	0.0	.	68	.	.	Atlas-SNP
CDKN2A	1029	hgsc.bcm.edu	hg19	9	21971035	21971035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	CDKN2A_ENST00000498124,bladder,carcinoma,-1,5	CDKN2A	NM_000077	exon2	c.A323G	p.D108G	CAGGCATCGCGCA	.	123.0	41.0	127.0	0.0	.	4810	.	.	Atlas-SNP
CREB3	10488	hgsc.bcm.edu	hg19	9	35736083	35736083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CREB3	NM_006368	exon7	c.T650C	p.V217A	CCATGGTGATTGA	.	79.0	30.0	81.0	0.0	.	24	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79325451	79325451	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	PRUNE2	NM_015225	exon8	c.A1739T	p.N580I	TCAGAGTTATCTC	.	72.0	26.0	103.0	0.0	.	331	.	.	Atlas-SNP
RAD23B	5887	hgsc.bcm.edu	hg19	9	110081131	110081131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	RAD23B	NM_002874	exon6	c.C652G	p.P218A	AACAACCCTGACA	.	97.0	25.0	80.0	0.0	.	31	.	.	Atlas-SNP
ENTPD2	954	hgsc.bcm.edu	hg19	9	139943427	139943427	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ENTPD2	NM_203468	exon8	c.A1250T	p.E417V	GCGCGCTCGTCGA	.	92.0	20.0	98.0	0.0	.	30	.	.	Atlas-SNP
GATA3	2625	hgsc.bcm.edu	hg19	10	8097825	8097825	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	GATA3	NM_002051	exon2	c.G207A	p.R69R	GGTCAGGGCCACG	.	227.0	92.0	248.0	0.0	.	182	.	.	Atlas-SNP
SLC39A12	221074	hgsc.bcm.edu	hg19	10	18270244	18270244	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	SLC39A12	NM_152725	exon6	c.T928A	p.C310S	CAGACCTGCTTCT	.	116.0	41.0	113.0	0.0	.	181	.	.	Atlas-SNP
MPP7	143098	hgsc.bcm.edu	hg19	10	28491163	28491163	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MPP7	NM_173496	exon5	c.G75T	p.L25L	TGGCTGCAGCTGG	.	140.0	47.0	119.0	0.0	.	60	.	.	Atlas-SNP
CSTF2T	23283	hgsc.bcm.edu	hg19	10	53457589	53457589	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CSTF2T	NM_015235	exon1	c.A1721T	p.Q574L	TTCTCCTGATCCT	.	103.0	37.0	101.0	0.0	.	64	.	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134738360	134738360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	TTC40	NM_001200049	exon11	c.G1096T	p.V366F	GCGCGACGTCTAG	.	142.0	49.0	163.0	0.0	.	100	.	.	Atlas-SNP
CNGA4	1262	hgsc.bcm.edu	hg19	11	6261883	6261883	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CNGA4	NM_001037329	exon4	c.A859T	p.K287X	CTGGTGAAGAAGT	.	141.0	50.0	129.0	0.0	.	96	.	.	Atlas-SNP
OR4A15	81328	hgsc.bcm.edu	hg19	11	55135453	55135453	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	OR4A15	NM_001005275	exon1	c.A94T	p.K32X	CACATGAAAAATA	.	109.0	44.0	114.0	0.0	.	161	.	.	Atlas-SNP
SYT7	9066	hgsc.bcm.edu	hg19	11	61295635	61295635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	SYT7	NM_001252065	exon6	c.A599G	p.D200G	GCCTCATCCTCCT	.	36.0	14.0	51.0	0.0	.	39	.	.	Atlas-SNP
SLC22A8	9376	hgsc.bcm.edu	hg19	11	62763192	62763192	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	SLC22A8	NM_001184732	exon7	c.T985A	p.C329S	AAAGACAGAAGGT	.	77.0	44.0	85.0	0.0	.	60	.	.	Atlas-SNP
INTS4	92105	hgsc.bcm.edu	hg19	11	77632432	77632432	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	INTS4	NM_033547	exon14	c.A1718T	p.Y573F	TAGGCATAGTGCC	.	334.0	119.0	334.0	0.0	.	89	.	.	Atlas-SNP
FLI1	2313	hgsc.bcm.edu	hg19	11	128680398	128680398	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	FLI1	NM_002017	exon9	c.T874A	p.S292T	CTGCTCTCCGACA	.	84.0	24.0	76.0	0.0	.	72	.	.	Atlas-SNP
NCAPD2	9918	hgsc.bcm.edu	hg19	12	6640135	6640135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	NCAPD2	NM_014865	exon31	c.T4013C	p.V1338A	ACTTTGTCACACC	.	109.0	43.0	101.0	0.0	.	99	.	.	Atlas-SNP
CLEC1A	51267	hgsc.bcm.edu	hg19	12	10224016	10224016	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CLEC1A	NM_016511	exon6	c.G759A	p.K253K	ACAACGCTTCAAT	.	84.0	6.0	89.0	0.0	.	48	.	.	Atlas-SNP
PRICKLE1	144165	hgsc.bcm.edu	hg19	12	42860019	42860019	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	PRICKLE1	NM_001144882	exon6	c.G752C	p.C251S	GTTTCACAGTACT	.	131.0	44.0	124.0	0.0	.	105	.	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	hg19	12	48393717	48393717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	COL2A1	NM_001844	exon2	c.C277T	p.L93F	TGGCGAGGTCAGT	.	114.0	34.0	150.0	0.0	.	368	.	.	Atlas-SNP
SMARCD1	6602	hgsc.bcm.edu	hg19	12	50492775	50492775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	SMARCD1	NM_003076	exon13	c.A1540G	p.N514D	ATCCGGAATACAT	.	58.0	22.0	66.0	0.0	.	37	.	.	Atlas-SNP
IRAK3	11213	hgsc.bcm.edu	hg19	12	66638917	66638917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	IRAK3	NM_007199	exon11	c.G1189A	p.D397N	GGCCTGGATTCAT	.	136.0	69.0	110.0	0.0	.	75	.	.	Atlas-SNP
ATXN2	6311	hgsc.bcm.edu	hg19	12	111902504	111902504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ATXN2	NM_002973	exon21	c.C3332A	p.P1111Q	TTGTATGGTAATT	.	91.0	4.0	70.0	0.0	.	99	.	.	Atlas-SNP
TCTN2	79867	hgsc.bcm.edu	hg19	12	124192255	124192255	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	TCTN2	NM_024809	exon18	c.A2089T	p.S697C	GCCTATAGTTAGA	.	82.0	39.0	74.0	0.0	.	50	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103396437	103396437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	.	NM_001146197	exon4	c.G6610T	p.A2204S	GTAATGCCTCTCC	.	90.0	35.0	54.0	0.0	.	.	.	.	Atlas-SNP
ARHGEF7	8874	hgsc.bcm.edu	hg19	13	111926288	111926288	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ARHGEF7	NM_001113511	exon11	c.A1264T	p.R422X	CTCGAGAGACACA	.	77.0	19.0	79.0	0.0	.	157	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23900980	23900980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MYH7	NM_000257	exon7	c.G629A	p.S210N	CCCGGGCTCTGGT	.	69.0	24.0	60.0	0.0	.	349	.	.	Atlas-SNP
INSM2	84684	hgsc.bcm.edu	hg19	14	36003923	36003923	+	Silent	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	INSM2	NM_032594	exon1	c.A465T	p.A155A	GCCAGCAGCCGCA	.	29.0	8.0	30.0	0.0	.	39	.	.	Atlas-SNP
PELI2	57161	hgsc.bcm.edu	hg19	14	56757106	56757106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	PELI2,NS,carcinoma,-2,1	PELI2	NM_021255	exon5	c.G628A	p.E210K	TGGCGCGAGATCT	.	75.0	27.0	81.0	1.0	.	55	.	.	Atlas-SNP
KIAA0317	9870	hgsc.bcm.edu	hg19	14	75139861	75139861	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	KIAA0317	NM_001039479	exon10	c.A1219T	p.I407F	GTTGAATGCCATC	.	98.0	39.0	103.0	0.0	.	68	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	hg19	14	79432393	79432393	+	Silent	SNP	T	T	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	NRXN3	NM_004796	exon9	c.T1302G	p.R434R	TACCCGTTTGGAG	.	68.0	22.0	66.0	0.0	.	342	.	.	Atlas-SNP
GPR68	8111	hgsc.bcm.edu	hg19	14	91701172	91701172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	GPR68	NM_001177676	exon2	c.C223A	p.P75T	AGAAGGGCAGCGA	.	87.0	38.0	87.0	0.0	.	32	.	.	Atlas-SNP
ARHGAP11A	9824	hgsc.bcm.edu	hg19	15	32928129	32928129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ARHGAP11A	NM_199357	exon11	c.A1496G	p.Y499C	TTACATACTACTG	.	191.0	58.0	165.0	0.0	.	84	.	.	Atlas-SNP
UACA	55075	hgsc.bcm.edu	hg19	15	70959550	70959550	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	UACA	NM_018003	exon16	c.A3473C	p.N1158T	TTTTGATTCTCCA	.	58.0	25.0	81.0	0.0	.	235	.	.	Atlas-SNP
ZNF646	9726	hgsc.bcm.edu	hg19	16	31090546	31090546	+	Silent	SNP	C	C	T	rs140492151		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ZNF646	NM_014699	exon2	c.C2901T	p.Y967Y	GACCTACGATGAC	.	63.0	22.0	103.0	0.0	.	133	.	C|1.000;T|0.000	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7637534	7637534	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	DNAH2	NM_020877	exon5	c.T662A	p.L221H	CGGTCCTCTACAT	.	156.0	56.0	142.0	0.0	.	498	.	.	Atlas-SNP
TAF15	8148	hgsc.bcm.edu	hg19	17	34171663	34171663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	TAF15	NM_139215	exon15	c.G1360A	p.G454S	GGGGGTGGCTATG	.	72.0	23.0	89.0	0.0	.	46	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975889	38975889	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	KRT10	NM_000421	exon6	c.T1253A	p.L418X	TGTTGCAACTGTT	.	136.0	59.0	152.0	0.0	.	56	.	.	Atlas-SNP
KIF2B	84643	hgsc.bcm.edu	hg19	17	51901119	51901119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	KIF2B	NM_032559	exon1	c.A725T	p.N242I	CGGACAATGTGGT	.	104.0	32.0	146.0	0.0	.	254	.	.	Atlas-SNP
CARD14	79092	hgsc.bcm.edu	hg19	17	78176201	78176201	+	Missense_Mutation	SNP	C	C	G	rs371296759	alternate_allele	TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CARD14	NM_024110	exon15	c.C2201G	p.T734S	ACGGCACCATCCC	.	59.0	12.0	63.0	0.0	.	98	.	.	Atlas-SNP
C17orf70	80233	hgsc.bcm.edu	hg19	17	79514592	79514592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	C17orf70	NM_025161	exon5	c.A1516G	p.I506V	AGGAGATGGGTCT	.	54.0	14.0	57.0	0.0	.	79	.	.	Atlas-SNP
MOCOS	55034	hgsc.bcm.edu	hg19	18	33779681	33779681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MOCOS	NM_017947	exon4	c.A335T	p.Y112F	AAGACTACACTGT	.	79.0	31.0	90.0	0.0	.	84	.	.	Atlas-SNP
MC4R	4160	hgsc.bcm.edu	hg19	18	58038792	58038792	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MC4R	NM_005912	exon1	c.A791T	p.H264L	ATTAAGTGGAGGA	.	167.0	69.0	132.0	0.0	.	49	.	.	Atlas-SNP
MED16	10025	hgsc.bcm.edu	hg19	19	868161	868161	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MED16	NM_005481	exon16	c.A2574T	p.T858T	GTGGTGTGTGGAC	.	39.0	14.0	61.0	0.0	.	61	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9049962	9049962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MUC16	NM_024690	exon5	c.A31669T	p.T10557S	ATGGGGTTGTCCT	.	199.0	78.0	170.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9049967	9049967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MUC16	NM_024690	exon5	c.G31664T	p.R10555M	GTTGTCCTGGGAA	.	197.0	74.0	174.0	0.0	.	4315	.	.	Atlas-SNP
ICAM1	3383	hgsc.bcm.edu	hg19	19	10395559	10395559	+	Silent	SNP	C	C	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ICAM1	NM_000201	exon6	c.C1281T	p.P427P	ATTGCCCGAGCTC	.	90.0	25.0	107.0	0.0	.	32	.	.	Atlas-SNP
ZNF681	148213	hgsc.bcm.edu	hg19	19	23927688	23927688	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ZNF681	NM_138286	exon4	c.G664T	p.G222X	TCTCTCCAATATG	.	61.0	20.0	64.0	0.0	.	76	.	.	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	hg19	19	35993746	35993746	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	DMKN	NM_033317	exon10	c.A1177T	p.S393C	GTCGGCTGAAGTA	.	140.0	44.0	143.0	0.0	.	116	.	.	Atlas-SNP
B9D2	80776	hgsc.bcm.edu	hg19	19	41860749	41860749	+	Silent	SNP	C	C	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	B9D2	NM_030578	exon4	c.G384T	p.V128V	ACCACCCACGAAA	.	99.0	30.0	100.0	0.0	.	9	.	.	Atlas-SNP
IL4I1	259307	hgsc.bcm.edu	hg19	19	50393835	50393835	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	IL4I1	NM_172374	exon10	c.T862A	p.W288R	GGTCCCAGCCACC	.	30.0	11.0	35.0	0.0	.	50	.	.	Atlas-SNP
PRKCG	5582	hgsc.bcm.edu	hg19	19	54409615	54409615	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	PRKCG	NM_002739	exon17	c.T1809A	p.D603E	GCCTGATGGGGAA	.	76.0	26.0	79.0	0.0	.	246	.	.	Atlas-SNP
ZNF416	55659	hgsc.bcm.edu	hg19	19	58084830	58084830	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ZNF416	NM_017879	exon4	c.C442G	p.P148A	CCAAGGGTTTCTC	.	114.0	44.0	113.0	0.0	.	50	.	.	Atlas-SNP
ARFGEF2	10564	hgsc.bcm.edu	hg19	20	47602054	47602054	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ARFGEF2	NM_006420	exon16	c.G2180C	p.R727P	CCCTGCGGACATT	.	178.0	71.0	198.0	0.0	.	160	.	.	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	hg19	20	60485571	60485571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CDH4	NM_001794	exon9	c.G1282A	p.A428T	TGGAATGCCGTTT	.	138.0	51.0	132.0	0.0	.	172	.	.	Atlas-SNP
OLIG2	10215	hgsc.bcm.edu	hg19	21	34400111	34400111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	OLIG2	NM_005806	exon2	c.G941T	p.S314I	CCGGCAGCCTGCC	.	22.0	6.0	16.0	0.0	.	22	.	.	Atlas-SNP
IL10RB	3588	hgsc.bcm.edu	hg19	21	34655403	34655403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	IL10RB	NM_000628	exon5	c.A503G	p.Q168R	AGTTTCAAATTAC	.	89.0	38.0	95.0	0.0	.	37	.	.	Atlas-SNP
DYRK1A	1859	hgsc.bcm.edu	hg19	21	38877655	38877655	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	DYRK1A,caecum,carcinoma,0,1	DYRK1A	NM_001396	exon9	c.C1309T	p.R437X	GGTGGGCGACGTG	.	85.0	34.0	135.0	0.0	.	85	.	.	Atlas-SNP
ITGB2	3689	hgsc.bcm.edu	hg19	21	46311901	46311901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	ITGB2	NM_000211	exon11	c.A1235T	p.Q412L	TTCACCTGGAAGG	.	44.0	21.0	37.0	0.0	.	107	.	.	Atlas-SNP
RASD2	23551	hgsc.bcm.edu	hg19	22	35948024	35948024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	RASD2	NM_014310	exon3	c.C746A	p.A249D	TCAAGGCCAAGGT	.	21.0	8.0	21.0	0.0	.	34	.	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	hg19	22	40069972	40069972	+	Silent	SNP	G	G	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CACNA1I	NM_021096	exon29	c.G4788T	p.L1596L	AGTGCTGAAGCTG	.	39.0	10.0	50.0	0.0	.	264	.	.	Atlas-SNP
PRR5	55615	hgsc.bcm.edu	hg19	22	45132780	45132780	+	Missense_Mutation	SNP	G	G	T	rs376477477	alternate_allele	TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	PRR5	NM_001198721	exon10	c.G889T	p.G297C	GCGGCCGGCGGTA	.	86.0	23.0	113.0	0.0	.	75	.	.	Atlas-SNP
MAPK11	5600	hgsc.bcm.edu	hg19	22	50706332	50706332	+	Silent	SNP	G	G	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	MAPK11	NM_002751	exon2	c.C163T	p.L55L	GCGACAGCTTCTT	.	123.0	46.0	126.0	0.0	.	23	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53561499	53561499	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	HUWE1	NM_031407	exon82	c.A12809T	p.K4270M	TGGTACTTGTGGT	.	79.0	55.0	75.0	0.0	.	724	.	.	Atlas-SNP
RAB33A	9363	hgsc.bcm.edu	hg19	X	129318331	129318331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	RAB33A	NM_004794	exon2	c.C331A	p.H111N	AACGTACATGCCG	.	59.0	48.0	88.0	0.0	.	24	.	.	Atlas-SNP
FRMD7	90167	hgsc.bcm.edu	hg19	X	131212800	131212800	+	Silent	SNP	A	A	G	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	FRMD7	NM_194277	exon12	c.T1245C	p.P415P	AATAAAAGGGAAA	.	95.0	4.0	106.0	0.0	.	69	.	.	Atlas-SNP
PCDH11Y	83259	hgsc.bcm.edu	hg19	Y	4924912	4924912	+	Silent	SNP	T	T	A	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	PCDH11Y	NM_032972	exon1	c.T48A	p.S16S	TCTCTCTCCTCTT	.	174.0	112.0	155.0	0.0	.	163	.	.	Atlas-SNP
GJB1	2705	hgsc.bcm.edu	hg19	X	70443636	70443637	+	In_Frame_Ins	INS	-	-	TCATCT	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	GJB1	NM_001097642	exon2	c.79_80insTCATCT	p.V27delinsVIF	.	.	45.0	20.0	50.0	0.0	.	21	.	.	Atlas-INDEL
SUCLA2	8803	hgsc.bcm.edu	hg19	13	48517535	48517540	+	In_Frame_Del	DEL	CATGTG	CATGTG	-	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	CATGTG	CATGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	SUCLA2	NM_003850	exon11	c.1359_1364del	p.453_455del	.	.	158.0	35.0	188.0	0.0	.	40	.	.	Atlas-INDEL
HDAC4	9759	hgsc.bcm.edu	hg19	2	239975278	239975278	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	HDAC4	NM_006037	exon26	c.3094delC	p.Q1032fs	.	.	84.0	21.0	80.0	0.0	.	127	.	.	Atlas-INDEL
HCN1	348980	hgsc.bcm.edu	hg19	5	45303784	45303785	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.,1	HCN1	NM_021072	exon6	c.1535_1536insA	p.M512fs	.	.	129.0	39.0	115.0	0.0	.	298	.	.	Atlas-INDEL
NGRN	51335	hgsc.bcm.edu	hg19	15	90808975	90808984	+	Frame_Shift_Del	DEL	GGGCGCGTTT	GGGCGCGTTT	-	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	GGGCGCGTTT	GGGCGCGTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	NGRN	NM_001033088	exon1	c.30_39del	p.10_13del	.	.	54.0	11.0	49.0	0.0	.	27	.	.	Atlas-INDEL
HDAC4	9759	hgsc.bcm.edu	hg19	2	239975280	239975281	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	HDAC4	NM_006037	exon26	c.3091_3092del	p.1031_1031del	.	.	84.0	21.0	79.0	0.0	.	127	.	.	Atlas-INDEL
CDK18	5129	hgsc.bcm.edu	hg19	1	205497176	205497219	+	Frame_Shift_Del	DEL	GACTGGCCAGGGCCAAGTCAGTGCCCACAAAGACTTACTCCAAT	GACTGGCCAGGGCCAAGTCAGTGCCCACAAAGACTTACTCCAAT	-	novel		TCGA-DD-AACK-01A-11D-A40R-10	TCGA-DD-AACK-10A-01D-A40U-10	GACTGGCCAGGGCCAAGTCAGTGCCCACAAAGACTTACTCCAAT	GACTGGCCAGGGCCAAGTCAGTGCCCACAAAGACTTACTCCAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1606e906-2e7b-4b31-a047-f6669a5f5db0	20530127-b977-4fd9-bd3e-d983efbe98cd	.	CDK18	NM_212503	exon10	c.944_986del	p.315_329del	.	.	137.0	12.0	160.0	0.0	.	75	.	.	Atlas-INDEL