Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm OR6K2 81448 hgsc.bcm.edu hg19 1 158669714 158669714 + Silent SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . OR6K2 NM_001005279 exon1 c.C729T p.V243V GTGAGAGACACAC . 330.0 42.0 223.0 0.0 . 104 . . Atlas-SNP OR6N1 128372 hgsc.bcm.edu hg19 1 158735540 158735540 + Silent SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af OR6N1,NS,carcinoma,0,1 OR6N1 NM_001005185 exon1 c.G933A p.L311L TCATGCCAATATC . 96.0 15.0 61.0 0.0 . 96 . . Atlas-SNP GPR161 23432 hgsc.bcm.edu hg19 1 168066166 168066166 + Missense_Mutation SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . GPR161 NM_001267609 exon4 c.G739A p.V247I TGACGACTGTGCC . 171.0 17.0 154.0 0.0 . 56 . . Atlas-SNP PAPPA2 60676 hgsc.bcm.edu hg19 1 176762739 176762739 + Silent SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . PAPPA2 NM_020318 exon20 c.C5064T p.P1688P TGACCCCGTGATG . 162.0 108.0 127.0 0.0 . 665 . . Atlas-SNP KDM5B 10765 hgsc.bcm.edu hg19 1 202702884 202702884 + Missense_Mutation SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . KDM5B NM_006618 exon23 c.C3554T p.P1185L GCAGCTGGGGCCT . 195.0 44.0 146.0 0.0 . 166 . . Atlas-SNP LYST 1130 hgsc.bcm.edu hg19 1 235955183 235955183 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . LYST NM_000081 exon12 c.A4359G p.I1453M TGGGGCTATGTGC . 166.0 77.0 134.0 0.0 . 370 . . Atlas-SNP OR2L8 391190 hgsc.bcm.edu hg19 1 248112256 248112256 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . OR2L8 NM_001001963 exon1 c.A97G p.I33V GTTTTCATTTTCC . 208.0 95.0 131.0 0.0 . 92 . . Atlas-SNP NLRC4 58484 hgsc.bcm.edu hg19 2 32476106 32476106 + Missense_Mutation SNP A A T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . NLRC4 NM_001199138 exon4 c.T827A p.I276N GTGACGATGACCA . 56.0 23.0 65.0 0.0 . 165 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32724675 32724675 + Silent SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af BIRC6_ENST00000421745,NS,carcinoma,0,2 BIRC6 NM_016252 exon46 c.C8530T p.L2844L TTCACTCTGGAGC . 66.0 23.0 75.0 0.0 . 838 . . Atlas-SNP CNGA3 1261 hgsc.bcm.edu hg19 2 99012481 99012481 + Missense_Mutation SNP G G A rs104893614 bycluster TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af CNGA3,colon,carcinoma,+1,1 CNGA3 NM_001298 exon8 c.G848A p.R283Q TTTCCCGGCTCTT . 165.0 61.0 179.0 0.0 . 118 . G|1.000;A|0.000 Atlas-SNP RANBP2 5903 hgsc.bcm.edu hg19 2 109381547 109381547 + Missense_Mutation SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . RANBP2 NM_006267 exon20 c.C4552T p.P1518S CCAACACCTGCCT . 86.0 31.0 109.0 0.0 . 488 . . Atlas-SNP SCN7A 6332 hgsc.bcm.edu hg19 2 167288893 167288893 + Missense_Mutation SNP A A T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . SCN7A NM_002976 exon15 c.T2527A p.S843T TATCAGATTCTCC . 51.0 22.0 99.0 0.0 . 410 . . Atlas-SNP NUP35 129401 hgsc.bcm.edu hg19 2 184022187 184022187 + Silent SNP T T A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . NUP35 NM_138285 exon6 c.T555A p.S185S AGCATCTGCTTCC . 47.0 17.0 42.0 0.0 . 28 . . Atlas-SNP MFSD6 54842 hgsc.bcm.edu hg19 2 191334570 191334570 + Missense_Mutation SNP A A C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . MFSD6 NM_017694 exon4 c.A1619C p.E540A CCATGGAAGTTCT . 64.0 29.0 76.0 0.0 . 58 . . Atlas-SNP NIF3L1 60491 hgsc.bcm.edu hg19 2 201761868 201761868 + Missense_Mutation SNP A A C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . NIF3L1 NM_001136039 exon5 c.A796C p.I266L ACCATGATTGATC . 80.0 34.0 151.0 0.0 . 51 . . Atlas-SNP ABCA12 26154 hgsc.bcm.edu hg19 2 215852376 215852376 + Missense_Mutation SNP G G T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af ABCA12,bladder,carcinoma,0,1 ABCA12 NM_173076 exon27 c.C3971A p.S1324Y CTGGCAGATGGGT . 222.0 11.0 255.0 0.0 . 368 . . Atlas-SNP PRKAG3 53632 hgsc.bcm.edu hg19 2 219692330 219692330 + Missense_Mutation SNP G G C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . PRKAG3 NM_017431 exon8 c.C843G p.F281L AGGCTTGAAGCAG . 90.0 32.0 92.0 0.0 . 47 . . Atlas-SNP ACVR2B 93 hgsc.bcm.edu hg19 3 38520626 38520626 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ACVR2B NM_001106 exon6 c.A674G p.Q225R ACAAGCAGTCGTG . 191.0 76.0 254.0 0.0 . 88 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266124 41266124 + Missense_Mutation SNP A A G rs121913412 bycluster TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af CTNNB1,gallbladder,other,0,1 CTNNB1 NM_001098209 exon3 c.A121G p.T41A GCCACTACCACAG . 134.0 53.0 190.0 1.0 . 4904 . . Atlas-SNP RAD54L2 23132 hgsc.bcm.edu hg19 3 51664804 51664804 + Nonsense_Mutation SNP G G T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . RAD54L2 NM_015106 exon6 c.G682T p.E228X GAGGAAGAAGAGA . 55.0 27.0 61.0 0.0 . 94 . . Atlas-SNP PSMD6 9861 hgsc.bcm.edu hg19 3 64004653 64004653 + Silent SNP A A C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . PSMD6 NM_001271779 exon5 c.T717G p.L239L ACAATAAAGACCC . 184.0 62.0 257.0 0.0 . 30 . . Atlas-SNP SHQ1 55164 hgsc.bcm.edu hg19 3 72873605 72873605 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . SHQ1 NM_018130 exon6 c.A697G p.S233G CCTGACTCTTTTC . 70.0 25.0 106.0 0.0 . 60 . . Atlas-SNP GOLGB1 2804 hgsc.bcm.edu hg19 3 121410757 121410757 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . GOLGB1 NM_001256486 exon14 c.A7454G p.Y2485C TGTTGATAGTCAC . 90.0 39.0 144.0 0.0 . 319 . . Atlas-SNP DTX3L 151636 hgsc.bcm.edu hg19 3 122284854 122284854 + Silent SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . DTX3L NM_138287 exon2 c.G336A p.P112P AACACCGTCTGGT . 109.0 40.0 166.0 0.0 . 59 . . Atlas-SNP P2RY1 5028 hgsc.bcm.edu hg19 3 152554320 152554320 + Missense_Mutation SNP A A T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . P2RY1 NM_002563 exon1 c.A749T p.D250V ATCTGGACAACTC . 83.0 38.0 109.0 0.0 . 49 . . Atlas-SNP WWC2 80014 hgsc.bcm.edu hg19 4 184180883 184180883 + Splice_Site SNP T T G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . WWC2 NM_024949 exon10 c.1286+2T>G . AAAAGGTGAGCTT . 208.0 93.0 285.0 1.0 . 78 . . Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187510117 187510117 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . FAT1 NM_005245 exon27 c.A13396G p.R4466G TGTCTCTAGGAGG . 194.0 63.0 217.0 0.0 . 500 . . Atlas-SNP ZSWIM6 57688 hgsc.bcm.edu hg19 5 60825879 60825879 + Missense_Mutation SNP A A T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ZSWIM6 NM_020928 exon8 c.A1838T p.E613V ACACAGAGCTACC . 151.0 90.0 163.0 0.0 . 51 . . Atlas-SNP ST8SIA4 7903 hgsc.bcm.edu hg19 5 100231434 100231434 + Nonsense_Mutation SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af ST8SIA4,NS,carcinoma,+1,1 ST8SIA4 NM_175052 exon2 c.C169T p.R57X CCTTTCGAATGAT . 137.0 39.0 119.0 0.0 . 77 . . Atlas-SNP ADAMTS19 171019 hgsc.bcm.edu hg19 5 128861992 128861992 + Missense_Mutation SNP G G C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ADAMTS19 NM_133638 exon4 c.G911C p.R304T GACCTAGGTCTAG . 345.0 210.0 315.0 0.0 . 216 . . Atlas-SNP UBR2 23304 hgsc.bcm.edu hg19 6 42629942 42629942 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . UBR2 NM_015255 exon31 c.A3463G p.M1155V TTATTCATGCACC . 66.0 14.0 60.0 0.0 . 134 . . Atlas-SNP MLIP 90523 hgsc.bcm.edu hg19 6 54095631 54095631 + Silent SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . MLIP NM_138569 exon11 c.A1233G p.P411P TGCCCCAGGACCC . 73.0 40.0 66.0 0.0 . 84 . . Atlas-SNP GPR63 81491 hgsc.bcm.edu hg19 6 97246634 97246634 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . GPR63 NM_030784 exon2 c.T974C p.V325A CAGCAGACAATGA . 169.0 53.0 166.0 0.0 . 60 . . Atlas-SNP TFB1M 51106 hgsc.bcm.edu hg19 6 155632360 155632360 + Missense_Mutation SNP C C A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . TFB1M NM_016020 exon2 c.G247T p.V83L CAACCACCAGAAG . 130.0 46.0 106.0 0.0 . 30 . . Atlas-SNP RADIL 55698 hgsc.bcm.edu hg19 7 4917682 4917682 + Missense_Mutation SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . RADIL NM_018059 exon2 c.G89A p.R30Q AGCGTCCGGGACA . 58.0 26.0 71.0 0.0 . 110 . . Atlas-SNP ANKMY2 57037 hgsc.bcm.edu hg19 7 16666729 16666729 + Silent SNP T T A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ANKMY2 NM_020319 exon3 c.A207T p.G69G ATCGGCTCCATGT . 61.0 17.0 77.0 0.0 . 46 . . Atlas-SNP PLEKHA8 84725 hgsc.bcm.edu hg19 7 30102308 30102308 + Missense_Mutation SNP G G T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . PLEKHA8 NM_001197027 exon12 c.G1250T p.G417V TGAAGGGATTTTT . 54.0 18.0 58.0 0.0 . 68 . . Atlas-SNP CFTR 1080 hgsc.bcm.edu hg19 7 117243681 117243681 + Missense_Mutation SNP T T A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . CFTR NM_000492 exon17 c.T2753A p.I918N TTTACATTTACGT . 112.0 21.0 125.0 0.0 . 171 . . Atlas-SNP LONRF1 91694 hgsc.bcm.edu hg19 8 12589255 12589255 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . LONRF1 NM_152271 exon8 c.G1678T p.E560X AGAGTTCAGCAGT . 99.0 69.0 234.0 1.0 . 45 . . Atlas-SNP TRIB1 10221 hgsc.bcm.edu hg19 8 126445629 126445629 + Missense_Mutation SNP C C G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . TRIB1 NM_025195 exon2 c.C431G p.T144S ACATTACTGGCAT . 273.0 53.0 138.0 0.0 . 73 . . Atlas-SNP COL22A1 169044 hgsc.bcm.edu hg19 8 139895407 139895407 + Silent SNP G G T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . COL22A1 NM_152888 exon2 c.C9A p.G3G TCGGAGGCCGGCC . 154.0 82.0 74.0 0.0 . 390 . . Atlas-SNP IGFBPL1 347252 hgsc.bcm.edu hg19 9 38411534 38411534 + Silent SNP G G T rs375493692 alternate_allele TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . IGFBPL1 NM_001007563 exon4 c.C700A p.R234R CCTTTCGCAGGGG . 70.0 20.0 76.0 0.0 . 8 . . Atlas-SNP NTRK2 4915 hgsc.bcm.edu hg19 9 87635234 87635234 + Silent SNP T T A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . NTRK2 NM_006180 exon20 c.T2286A p.I762I GGAGATTTTCACC . 114.0 37.0 153.0 0.0 . 331 . . Atlas-SNP PTCHD3 374308 hgsc.bcm.edu hg19 10 27702854 27702854 + Missense_Mutation SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . PTCHD3 NM_001034842 exon1 c.G326A p.R109K CGGTGCCTGCAGA . 38.0 13.0 67.0 0.0 . 140 . . Atlas-SNP WDFY4 57705 hgsc.bcm.edu hg19 10 50085112 50085112 + Silent SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . WDFY4 NM_020945 exon43 c.G7035A p.P2345P CGAGCCGGACGAG . 81.0 33.0 131.0 0.0 . 205 . . Atlas-SNP UNC5B 219699 hgsc.bcm.edu hg19 10 73050696 73050696 + Missense_Mutation SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . UNC5B NM_170744 exon9 c.C1124T p.A375V ATGCGGCGCTGTA . 47.0 22.0 69.0 0.0 . 123 . . Atlas-SNP ABCC2 1244 hgsc.bcm.edu hg19 10 101590535 101590535 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ABCC2 NM_000392 exon21 c.A2810G p.N937S ATGTGAATAGCCT . 96.0 49.0 170.0 0.0 . 160 . . Atlas-SNP PKD2L1 9033 hgsc.bcm.edu hg19 10 102054310 102054310 + Silent SNP G G A rs148570260 TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . PKD2L1 NM_016112 exon9 c.C1641T p.F547F GAAGACGAAGAAG . 132.0 50.0 151.0 0.0 . 103 . G|1.000;A|0.000 Atlas-SNP C11orf16 56673 hgsc.bcm.edu hg19 11 8950997 8950997 + Missense_Mutation SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . C11orf16 NM_020643 exon3 c.C251T p.A84V GTGTTGGCAGCAT . 73.0 29.0 104.0 0.0 . 43 . . Atlas-SNP PLEKHA7 144100 hgsc.bcm.edu hg19 11 16863238 16863238 + Missense_Mutation SNP T T C rs200394760 bycluster TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . PLEKHA7 NM_175058 exon9 c.A728G p.Y243C CTGTTATAGATGA . 37.0 16.0 49.0 0.0 . 120 . T|0.999;C|0.001 Atlas-SNP API5 8539 hgsc.bcm.edu hg19 11 43340327 43340327 + Silent SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . API5 NM_006595 exon2 c.C207T p.D69D GTTAGACCTCTGT . 37.0 19.0 27.0 0.0 . 91 . . Atlas-SNP SPCS2 9789 hgsc.bcm.edu hg19 11 74687909 74687909 + Missense_Mutation SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . SPCS2 NM_014752 exon5 c.G502A p.D168N TTTGATGACAAAT . 316.0 110.0 367.0 0.0 . 17 . . Atlas-SNP ATM 472 hgsc.bcm.edu hg19 11 108124684 108124684 + Missense_Mutation SNP C C G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ATM NM_000051 exon13 c.C2042G p.S681C GCTTCTCTGTCCA . 43.0 16.0 64.0 0.0 . 1657 . . Atlas-SNP C2CD2L 9854 hgsc.bcm.edu hg19 11 118984970 118984970 + Missense_Mutation SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . C2CD2L NM_014807 exon13 c.G1807A p.E603K GCAGACGAGACAA . 60.0 28.0 89.0 0.0 . 39 . . Atlas-SNP GRAMD1B 57476 hgsc.bcm.edu hg19 11 123477353 123477353 + Missense_Mutation SNP G G C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . GRAMD1B NM_020716 exon10 c.G931C p.G311R CTGGAGGGAGACG . 63.0 22.0 81.0 0.0 . 122 . . Atlas-SNP ACRV1 56 hgsc.bcm.edu hg19 11 125546342 125546342 + Silent SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ACRV1 NM_001612 exon3 c.T585C p.Y195Y ATTCATATAAGCA . 64.0 30.0 69.0 0.0 . 21 . . Atlas-SNP FAR2 55711 hgsc.bcm.edu hg19 12 29460716 29460716 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . FAR2 NM_018099 exon5 c.T671C p.I224T TGAACATTGCCAT . 56.0 25.0 65.0 0.0 . 60 . . Atlas-SNP STAC3 246329 hgsc.bcm.edu hg19 12 57642930 57642930 + Silent SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . STAC3 NM_145064 exon3 c.G228A p.E76E GGGTGGCTCCTCC . 42.0 19.0 55.0 0.0 . 32 . . Atlas-SNP XPOT 11260 hgsc.bcm.edu hg19 12 64813856 64813856 + Missense_Mutation SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . XPOT NM_007235 exon7 c.C496T p.R166C GAGGCTCGTAGGA . 40.0 17.0 52.0 0.0 . 105 . . Atlas-SNP KBTBD6 89890 hgsc.bcm.edu hg19 13 41705671 41705671 + Missense_Mutation SNP G G C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . KBTBD6 NM_152903 exon1 c.C977G p.S326C ACAAGAGAGTTGC . 243.0 76.0 294.0 0.0 . 83 . . Atlas-SNP HECTD1 25831 hgsc.bcm.edu hg19 14 31576900 31576900 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . HECTD1 NM_015382 exon37 c.T6491C p.L2164S TCTCCTAAAAATT . 66.0 28.0 71.0 0.0 . 159 . . Atlas-SNP PSEN1 5663 hgsc.bcm.edu hg19 14 73678608 73678608 + Missense_Mutation SNP G G C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . PSEN1 NM_000021 exon10 c.G1087C p.E363Q GTCCAGGAACTTT . 106.0 39.0 109.0 0.0 . 38 . . Atlas-SNP TRIP11 9321 hgsc.bcm.edu hg19 14 92488109 92488109 + Missense_Mutation SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . TRIP11 NM_004239 exon4 c.G379A p.A127T GAGCAGCTGACTG . 43.0 11.0 70.0 0.0 . 184 . . Atlas-SNP GABRB3 2562 hgsc.bcm.edu hg19 15 26866602 26866602 + Missense_Mutation SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . GABRB3 NM_021912 exon4 c.C320T p.T107M TCAAGCGTGAGGT . 94.0 34.0 123.0 0.0 . 338 . . Atlas-SNP KIF7 374654 hgsc.bcm.edu hg19 15 90171679 90171679 + Missense_Mutation SNP T T A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . KIF7 NM_198525 exon19 c.A4003T p.M1335L CAATCATCCCCGG . 94.0 37.0 110.0 0.0 . 130 . . Atlas-SNP DNAH3 55567 hgsc.bcm.edu hg19 16 20966168 20966168 + Missense_Mutation SNP C C T rs142557616 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . DNAH3 NM_017539 exon55 c.G11038A p.V3680I GAACAACGGCGTG . 75.0 32.0 95.0 0.0 . 1142 . C|0.996;A|0.004 Atlas-SNP RBBP6 5930 hgsc.bcm.edu hg19 16 24583618 24583618 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . RBBP6 NM_006910 exon18 c.A5231G p.H1744R AAAAGCATAAGAA . 212.0 99.0 204.0 0.0 . 158 . . Atlas-SNP SNX20 124460 hgsc.bcm.edu hg19 16 50707378 50707378 + Missense_Mutation SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . SNX20 NM_182854 exon4 c.G890A p.R297Q GGCCTCCGGAGCT . 58.0 25.0 72.0 0.0 . 50 . . Atlas-SNP IST1 9798 hgsc.bcm.edu hg19 16 71961659 71961659 + Missense_Mutation SNP A A C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . . NM_001270976 exon11 c.A1083C p.E361D ATCTGAAGACATT . 53.0 28.0 61.0 0.0 . . . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88495895 88495895 + Missense_Mutation SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ZNF469 NM_001127464 exon1 c.G2017A p.A673T TTTCCCGCAGATG . 195.0 18.0 252.0 0.0 . 121 . . Atlas-SNP C17orf74 201243 hgsc.bcm.edu hg19 17 7329876 7329876 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . C17orf74 NM_175734 exon3 c.A566G p.D189G AGGAGGACAACCT . 30.0 20.0 70.0 0.0 . 56 . . Atlas-SNP KRBA2 124751 hgsc.bcm.edu hg19 17 8272535 8272535 + Missense_Mutation SNP C C A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . KRBA2 NM_213597 exon2 c.G1396T p.D466Y CCATATCAGATCT . 36.0 25.0 101.0 0.0 . 34 . . Atlas-SNP ZNF286B 729288 hgsc.bcm.edu hg19 17 18566384 18566384 + Silent SNP C C A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ZNF286B NM_001145045 exon5 c.G435T p.R145R ACTATTCCGTGTC . 111.0 78.0 253.0 1.0 . 75 . . Atlas-SNP SLC13A2 9058 hgsc.bcm.edu hg19 17 26817351 26817351 + Missense_Mutation SNP T T A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . SLC13A2 NM_001145975 exon3 c.T258A p.S86R ATCCAGTTTCGAG . 157.0 29.0 81.0 0.0 . 125 . . Atlas-SNP KRT20 54474 hgsc.bcm.edu hg19 17 39034466 39034466 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . KRT20 NM_019010 exon6 c.T1070C p.L357P ATGTCAAGAAGGA . 136.0 21.0 102.0 0.0 . 38 . . Atlas-SNP NME1-NME2 654364 hgsc.bcm.edu hg19 17 49247317 49247317 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . NME1-NME2 NM_001018136 exon7 c.T593C p.V198A TGAACGTGGTGAA . 188.0 32.0 79.0 0.0 . 17 . . Atlas-SNP USH1G 124590 hgsc.bcm.edu hg19 17 72916457 72916457 + Silent SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . USH1G NM_173477 exon2 c.C474T p.H158H GCGTTCGTGGTGC . 90.0 14.0 55.0 0.0 . 40 . . Atlas-SNP LAMA1 284217 hgsc.bcm.edu hg19 18 7008502 7008502 + Silent SNP C C A rs374423781 TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . LAMA1 NM_005559 exon28 c.G4107T p.V1369V GAATCCCACAGTG . 69.0 31.0 67.0 0.0 . 458 . . Atlas-SNP ZNF397 84307 hgsc.bcm.edu hg19 18 32825455 32825455 + Silent SNP T T A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ZNF397 NM_001135178 exon4 c.T786A p.A262A TGAGGCTGAAAGA . 105.0 24.0 94.0 0.0 . 51 . . Atlas-SNP LPPR3 0 hgsc.bcm.edu hg19 19 813158 813158 + Silent SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . . NM_024888 exon7 c.C1653T p.A551A CTTCTCGGCCATC . 28.0 6.0 30.0 0.0 . . . . Atlas-SNP MBD3L1 85509 hgsc.bcm.edu hg19 19 8953470 8953470 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . MBD3L1 NM_145208 exon1 c.T116C p.V39A GGCCAGTAACGAG . 116.0 53.0 157.0 0.0 . 24 . . Atlas-SNP STX10 8677 hgsc.bcm.edu hg19 19 13260405 13260405 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . STX10 NM_003765 exon3 c.A208G p.I70V CCACTATACGTGG . 72.0 26.0 86.0 0.0 . 12 . . Atlas-SNP ZNF100 163227 hgsc.bcm.edu hg19 19 21909720 21909720 + Missense_Mutation SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ZNF100 NM_173531 exon5 c.C1394T p.A465V TTAAAGGCTTTGC . 33.0 15.0 62.0 0.0 . 62 . . Atlas-SNP ZNF284 342909 hgsc.bcm.edu hg19 19 44590539 44590539 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ZNF284 NM_001037813 exon5 c.A908G p.N303S ATCTTAATAGGCA . 53.0 21.0 64.0 0.0 . 38 . . Atlas-SNP SIX5 147912 hgsc.bcm.edu hg19 19 46271365 46271365 + Silent SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . SIX5 NM_175875 exon1 c.C738T p.S246S CCAGTTGCTGACC . 35.0 13.0 53.0 0.0 . 35 . . Atlas-SNP SIX5 147912 hgsc.bcm.edu hg19 19 46271366 46271366 + Missense_Mutation SNP C C A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . SIX5 NM_175875 exon1 c.G737T p.S246I CAGTTGCTGACCT . 35.0 13.0 55.0 0.0 . 35 . . Atlas-SNP ADRA1D 146 hgsc.bcm.edu hg19 20 4202607 4202607 + Missense_Mutation SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ADRA1D NM_000678 exon2 c.C1282T p.R428C GAGGGCGGCGGCG . 45.0 19.0 62.0 0.0 . 36 . . Atlas-SNP ARFGEF2 10564 hgsc.bcm.edu hg19 20 47605200 47605200 + Splice_Site SNP G G A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . ARFGEF2 NM_006420 exon18 c.2533+1G>A . AGCAGAGTAAGGT . 178.0 62.0 211.0 0.0 . 160 . . Atlas-SNP KRTAP10-7 386675 hgsc.bcm.edu hg19 21 46020913 46020913 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . KRTAP10-7 NM_198689 exon2 c.T377C p.V126A ACTGTGTGCCTGT . 70.0 27.0 96.0 0.0 . 41 . . Atlas-SNP HIRA 7290 hgsc.bcm.edu hg19 22 19373215 19373215 + Missense_Mutation SNP C C T novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . HIRA NM_003325 exon12 c.G1158A p.M386I CTCGGTCATGATG . 80.0 26.0 68.0 0.0 . 100 . . Atlas-SNP BCR 613 hgsc.bcm.edu hg19 22 23632562 23632562 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . BCR NM_021574 exon14 c.T2744C p.V915A TGAATGTCATCGT . 73.0 27.0 71.0 0.0 . 74 . . Atlas-SNP SREBF2 6721 hgsc.bcm.edu hg19 22 42269979 42269979 + Missense_Mutation SNP A A G novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . SREBF2 NM_004599 exon5 c.A1045G p.K349E AATGACAAAATCA . 220.0 52.0 196.0 0.0 . 99 . . Atlas-SNP CHIC1 53344 hgsc.bcm.edu hg19 X 72783217 72783217 + Missense_Mutation SNP T T C novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . CHIC1 NM_001039840 exon1 c.T97C p.S33P TCGCCGTCGTCGT . 98.0 4.0 104.0 0.0 . 13 . . Atlas-SNP IFI30 10437 hgsc.bcm.edu hg19 19 18284678 18284678 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . IFI30 NM_006332 exon1 c.26delT p.F9fs . . 35.0 20.0 42.0 0.0 . 12 . . Atlas-INDEL USP2 9099 hgsc.bcm.edu hg19 11 119243702 119243707 + In_Frame_Del DEL GGGGTC GGGGTC - novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 GGGGTC GGGGTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . USP2 NM_004205 exon2 c.485_490del p.162_164del . . 56.0 20.0 71.0 0.0 . 71 . . Atlas-INDEL FARSA 2193 hgsc.bcm.edu hg19 19 13035721 13035740 + Frame_Shift_Del DEL CTGGGCAAGGCGGTAGAGCG CTGGGCAAGGCGGTAGAGCG - novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 CTGGGCAAGGCGGTAGAGCG CTGGGCAAGGCGGTAGAGCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . FARSA NM_004461 exon9 c.1005_1024del p.335_342del . . 89.0 31.0 103.0 0.0 . 46 . . Atlas-INDEL GPR144 347088 hgsc.bcm.edu hg19 9 127217400 127217406 + Frame_Shift_Del DEL CCGTGAA CCGTGAA - novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 CCGTGAA CCGTGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . GPR144 NM_001161808 exon7 c.1442_1448del p.481_483del . . 38.0 15.0 47.0 0.0 . 33 . . Atlas-INDEL REST 5978 hgsc.bcm.edu hg19 4 57796354 57796355 + Frame_Shift_Ins INS - - A novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . REST NM_001193508 exon4 c.1330_1331insA p.E444fs . . 185.0 84.0 236.0 0.0 . 104 . . Atlas-INDEL JAM3 83700 hgsc.bcm.edu hg19 11 134018452 134018452 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . JAM3 NM_032801 exon7 c.722delA p.N241fs . . 103.0 48.0 128.0 0.0 . 41 . . Atlas-INDEL DEAF1 10522 hgsc.bcm.edu hg19 11 694962 694988 + In_Frame_Del DEL GCCGCCGCCGCCACAGCGGCCGCGGCC GCCGCCGCCGCCACAGCGGCCGCGGCC - novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 GCCGCCGCCGCCACAGCGGCCGCGGCC GCCGCCGCCGCCACAGCGGCCGCGGCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af DEAF1,NS,carcinoma,0,1 DEAF1 NM_021008 exon1 c.61_87del p.21_29del . . 14.0 13.0 18.0 0.0 . 47 . . Atlas-INDEL TEP1 7011 hgsc.bcm.edu hg19 14 20851711 20851711 + Frame_Shift_Del DEL G G - novel TCGA-DD-AACJ-01A-11D-A40R-10 TCGA-DD-AACJ-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 23475083-0f7f-4acb-a446-f65a896c9c60 a29286c8-285a-4358-9bcc-357f531707af . TEP1 NM_007110 exon26 c.3804delT p.A1268fs . . 94.0 43.0 100.0 0.0 . 224 . . Atlas-INDEL