Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm C1orf168 199920 hgsc.bcm.edu 37 1 57206372 57206372 + Silent SNP T T C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . C1orf168 NM_001004303 exon13 c.A1701G p.L567L TTACCTTAAGTTT . 56.0 22.0 107.0 0.0 . 102 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu 37 1 103405915 103405915 + Missense_Mutation SNP G G T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f COL11A1_ENST00000370096,NS,carcinoma,0,2 COL11A1 NM_080629 exon43 c.C3388A p.P1130T CGGCAGGACCAGC . 102.0 31.0 240.0 1.0 . 972 2 . Atlas-SNP KCNA3 3738 hgsc.bcm.edu 37 1 111216298 111216298 + Silent SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f KCNA3,NS,carcinoma,-1,1 KCNA3 NM_002232 exon1 c.G1134A p.S378S GTGGCGCGACAGC . 79.0 40.0 67.0 0.0 . 91 1 . Atlas-SNP KCND3 3752 hgsc.bcm.edu 37 1 112525100 112525100 + Missense_Mutation SNP G G T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f KCND3_ENST00000315987,NS,carcinoma,0,2 KCND3 NM_004980 exon2 c.C249A p.F83L GTCGAAGAAGTAC . 97.0 37.0 96.0 0.0 . 150 2 . Atlas-SNP ADAM30 11085 hgsc.bcm.edu 37 1 120438632 120438632 + Missense_Mutation SNP A A C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . ADAM30 NM_021794 exon1 c.T328G p.C110G AGTTGCAGTCCTT . 71.0 42.0 128.0 0.0 . 88 . . Atlas-SNP FLG 2312 hgsc.bcm.edu 37 1 152282404 152282404 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . FLG NM_002016 exon3 c.C4958T p.S1653L GTGCCTGATTGTC . 93.0 33.0 137.0 0.0 . 900 . . Atlas-SNP SLAMF1 6504 hgsc.bcm.edu 37 1 160604639 160604639 + Missense_Mutation SNP T T G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f SLAMF1,NS,carcinoma,+1,1 SLAMF1 NM_003037 exon3 c.A464C p.N155T GTCCCGTTCTCCT . 93.0 37.0 119.0 0.0 . 74 1 . Atlas-SNP ZBTB41 360023 hgsc.bcm.edu 37 1 197157558 197157558 + Silent SNP T T C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f ZBTB41,NS,carcinoma,-2,1 ZBTB41 NM_194314 exon4 c.A1410G p.K470K AAAAGATTTCTTA . 34.0 11.0 49.0 0.0 . 116 1 . Atlas-SNP NUP133 55746 hgsc.bcm.edu 37 1 229625781 229625781 + Missense_Mutation SNP A A T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . NUP133 NM_018230 exon9 c.T1115A p.L372Q GTTATCAGAGAGT . 84.0 39.0 161.0 0.0 . 111 . . Atlas-SNP ZNF512 84450 hgsc.bcm.edu 37 2 27822456 27822456 + Missense_Mutation SNP G G T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . ZNF512 NM_032434 exon4 c.G284T p.G95V GGTCAGGTGGAGT . 99.0 38.0 198.0 0.0 . 54 . . Atlas-SNP HAAO 23498 hgsc.bcm.edu 37 2 43015676 43015676 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . HAAO NM_012205 exon2 c.G152A p.G51D TCTTCACCCTCTT . 61.0 30.0 49.0 0.0 . 26 . . Atlas-SNP ABCG8 64241 hgsc.bcm.edu 37 2 44102319 44102319 + Missense_Mutation SNP T T G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . ABCG8 NM_022437 exon11 c.T1523G p.I508S CCTACATCATCAT . 42.0 14.0 50.0 0.0 . 98 . . Atlas-SNP C2orf81 388963 hgsc.bcm.edu 37 2 74642264 74642264 + Missense_Mutation SNP G G C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f C2orf81,colon,carcinoma,-1,1 C2orf81 NM_001145054 exon4 c.C959G p.S320C TGGCAGGACGCGG . 125.0 5.0 116.0 0.0 . 23 1 . Atlas-SNP AMER3 205147 hgsc.bcm.edu 37 2 131522066 131522066 + Silent SNP C C A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . . NM_152698 exon2 c.C2421A p.G807G CCAGGGCCACCAT . 97.0 33.0 66.0 0.0 . . . . Atlas-SNP MFF 56947 hgsc.bcm.edu 37 2 228197291 228197291 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . MFF NM_020194 exon5 c.C416T p.P139L CAACCCCTCAAAA . 140.0 57.0 256.0 0.0 . 48 . . Atlas-SNP TTLL3 26140 hgsc.bcm.edu 37 3 9867563 9867563 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . TTLL3 NM_001025930 exon8 c.C1234T p.P412S GTGGTACCCCAGA . 318.0 158.0 351.0 1.0 . 51 . . Atlas-SNP PLCL2 23228 hgsc.bcm.edu 37 3 17053189 17053189 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . PLCL2 NM_015184 exon2 c.A1973G p.Y658C ATGTCTATGTTGA . 92.0 42.0 132.0 0.0 . 145 . . Atlas-SNP NGLY1 55768 hgsc.bcm.edu 37 3 25777623 25777623 + Missense_Mutation SNP C C G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . NGLY1 NM_018297 exon7 c.G1021C p.V341L AATAGACTTCTGT . 68.0 22.0 146.0 0.0 . 57 . . Atlas-SNP EOMES 8320 hgsc.bcm.edu 37 3 27763429 27763429 + Silent SNP T T G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . EOMES NM_005442 exon1 c.A357C p.A119A GGCGGCTGCAGCG . 65.0 18.0 29.0 0.0 . 65 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu 37 3 41266101 41266101 + Missense_Mutation SNP C C T rs121913400 bycluster TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f CTNNB1,gallbladder,other,0,435 CTNNB1 NM_001098209 exon3 c.C98T p.S33F TGGACTCTGGAAT . 70.0 22.0 154.0 0.0 . 4904 435 . Atlas-SNP CDCP1 64866 hgsc.bcm.edu 37 3 45152154 45152154 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . CDCP1 NM_178181 exon4 c.G835T p.E279X CCCGCTCCTCCTT . 155.0 75.0 156.0 0.0 . 61 . . Atlas-SNP FEZF2 55079 hgsc.bcm.edu 37 3 62356922 62356922 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . FEZF2 NM_018008 exon4 c.G1090T p.E364X AAAATTCGCAGAC . 79.0 31.0 94.0 0.0 . 46 . . Atlas-SNP ADAMTS9 56999 hgsc.bcm.edu 37 3 64582563 64582563 + Silent SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . ADAMTS9 NM_182920 exon27 c.G4122A p.E1374E TCTTTGCTCATCA . 61.0 21.0 74.0 0.0 . 206 . . Atlas-SNP FRMD4B 23150 hgsc.bcm.edu 37 3 69362608 69362608 + Missense_Mutation SNP C C A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . FRMD4B NM_015123 exon2 c.G223T p.V75F CCTGAACCAGCAG . 56.0 24.0 92.0 0.0 . 90 . . Atlas-SNP PDE6B 5158 hgsc.bcm.edu 37 4 619713 619713 + Missense_Mutation SNP C C A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . PDE6B NM_001145291 exon1 c.C298A p.R100S CGCCAGCGCAACG . 87.0 47.0 68.0 0.0 . 80 . . Atlas-SNP NDNF 79625 hgsc.bcm.edu 37 4 121966814 121966814 + Missense_Mutation SNP G G C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . NDNF NM_024574 exon2 c.C179G p.T60R TTAGGTGTATCTC . 72.0 34.0 158.0 0.0 . 72 . . Atlas-SNP ADCY2 108 hgsc.bcm.edu 37 5 7698485 7698485 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . ADCY2 NM_020546 exon7 c.A1107G p.I369M AGCCATAAAGTAA . 28.0 15.0 53.0 0.0 . 337 . . Atlas-SNP C5orf22 55322 hgsc.bcm.edu 37 5 31541416 31541416 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f C5orf22,NS,carcinoma,0,1 C5orf22 NM_018356 exon6 c.G899A p.R300Q ATACTCGAATTCA . 48.0 24.0 104.0 0.0 . 48 1 . Atlas-SNP ADAMTS12 81792 hgsc.bcm.edu 37 5 33630934 33630934 + Missense_Mutation SNP C C A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . ADAMTS12 NM_030955 exon13 c.G1973T p.C658F TCAAAGCAAGGGG . 142.0 54.0 273.0 0.0 . 464 . . Atlas-SNP TGFBI 7045 hgsc.bcm.edu 37 5 135388596 135388596 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . TGFBI NM_000358 exon8 c.A914G p.D305G CCCCAGACCTGCT . 49.0 21.0 82.0 0.0 . 76 . . Atlas-SNP PCDHA1 56147 hgsc.bcm.edu 37 5 140168107 140168107 + Silent SNP G G C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f PCDHA1_ENST00000504120,NS,carcinoma,+2,2 PCDHA1 NM_031410 exon1 c.G2232C p.A744A CAGCGCGTTGGGG . 152.0 64.0 164.0 0.0 . 387 2 . Atlas-SNP CAMK2A 815 hgsc.bcm.edu 37 5 149602646 149602646 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f CAMK2A,NS,carcinoma,+2,1 CAMK2A NM_015981 exon18 c.G1372A p.A458T ACTGGGCGGTGCG . 61.0 24.0 59.0 0.0 . 42 1 . Atlas-SNP RNF145 153830 hgsc.bcm.edu 37 5 158586026 158586026 + Silent SNP C C A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . RNF145 NM_001199380 exon11 c.G1734T p.V578V CGTGATCACAGCA . 32.0 12.0 65.0 0.0 . 110 . . Atlas-SNP GABRA6 2559 hgsc.bcm.edu 37 5 161115970 161115970 + Missense_Mutation SNP G G T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f GABRA6,NS,carcinoma,0,1 GABRA6 NM_000811 exon4 c.G241T p.V81F ATGGATGTTTTTT . 39.0 20.0 49.0 0.0 . 139 1 . Atlas-SNP FOXC1 2296 hgsc.bcm.edu 37 6 1612042 1612042 + Silent SNP G G C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . FOXC1 NM_001453 exon1 c.G1362C p.G454G CGGCGGGGGAGGC . 346.0 31.0 188.0 0.0 . 19 . . Atlas-SNP VPS52 6293 hgsc.bcm.edu 37 6 33231576 33231576 + Missense_Mutation SNP G G C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . VPS52 NM_022553 exon16 c.C1701G p.N567K GTCATAGTTGTTG . 72.0 4.0 85.0 0.0 . 56 . . Atlas-SNP USP45 85015 hgsc.bcm.edu 37 6 99883624 99883624 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . USP45 NM_001080481 exon18 c.G2413A p.A805T GGTAGGCTTGTGC . 22.0 8.0 62.0 0.0 . 56 . . Atlas-SNP SEC63 11231 hgsc.bcm.edu 37 6 108194082 108194082 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . SEC63 NM_007214 exon20 c.G2069A p.G690E TAATTTCCAGGCT . 89.0 39.0 203.0 0.0 . 79 . . Atlas-SNP REV3L 5980 hgsc.bcm.edu 37 6 111652972 111652972 + Silent SNP T T C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . REV3L NM_002912 exon24 c.A7941G p.K2647K GCCAAATTTGAAC . 42.0 16.0 115.0 0.0 . 386 . . Atlas-SNP LAMA2 3908 hgsc.bcm.edu 37 6 129723605 129723605 + Missense_Mutation SNP T T C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . LAMA2 NM_000426 exon39 c.T5699C p.L1900S CTCAGTTGAATGA . 26.0 16.0 68.0 0.0 . 481 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu 37 6 138483281 138483281 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . KIAA1244 NM_020340 exon1 c.A58G p.I20V AAAGCCATCAAGG . 220.0 85.0 144.0 0.0 . 236 . . Atlas-SNP REPS1 85021 hgsc.bcm.edu 37 6 139234056 139234056 + Missense_Mutation SNP T T C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f REPS1,NS,carcinoma,0,1 REPS1 NM_031922 exon16 c.A1814G p.D605G TCGGCATCCACTG . 35.0 15.0 59.0 1.0 . 58 1 . Atlas-SNP MTRF1L 54516 hgsc.bcm.edu 37 6 153316417 153316417 + Missense_Mutation SNP T T C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . MTRF1L NM_019041 exon3 c.A377G p.E126G TCATTTTCATCTG . 69.0 31.0 165.0 0.0 . 21 . . Atlas-SNP PLG 5340 hgsc.bcm.edu 37 6 161134133 161134133 + Missense_Mutation SNP T T A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . PLG NM_000301 exon5 c.T523A p.Y175N TATGACTACTGCG . 49.0 15.0 53.0 0.0 . 150 . . Atlas-SNP CHPF2 54480 hgsc.bcm.edu 37 7 150935715 150935715 + Missense_Mutation SNP G G C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . CHPF2 NM_019015 exon4 c.G2267C p.R756P GGGGCCGTGCCCA . 95.0 23.0 69.0 0.0 . 52 . . Atlas-SNP XKR6 286046 hgsc.bcm.edu 37 8 10782179 10782179 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . XKR6 NM_173683 exon2 c.T926C p.I309T AGCATGATGTAGA . 38.0 17.0 64.0 0.0 . 85 . . Atlas-SNP PSD3 23362 hgsc.bcm.edu 37 8 18662113 18662113 + Splice_Site SNP C C A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . PSD3 NM_015310 exon7 c.1830-1G>T . TCGTTGCTATAAG . 46.0 22.0 101.0 0.0 . 142 . . Atlas-SNP ADAM28 10863 hgsc.bcm.edu 37 8 24199212 24199212 + Missense_Mutation SNP A A C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . ADAM28 NM_014265 exon16 c.A1772C p.E591A ATCCTGAAGACAC . 106.0 53.0 199.0 0.0 . 100 . . Atlas-SNP SLCO5A1 81796 hgsc.bcm.edu 37 8 70744717 70744717 + Silent SNP C C A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . SLCO5A1 NM_030958 exon2 c.G192T p.V64V AGAATCCACACAG . 105.0 68.0 78.0 0.0 . 142 . . Atlas-SNP SPAG1 6674 hgsc.bcm.edu 37 8 101206459 101206459 + Missense_Mutation SNP A A C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . SPAG1 NM_003114 exon10 c.A1059C p.K353N AGGAAAAAGCGGA . 370.0 20.0 577.0 0.0 . 80 . . Atlas-SNP EFR3A 23167 hgsc.bcm.edu 37 8 132966069 132966069 + Nonsense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . EFR3A NM_015137 exon6 c.C493T p.R165X AGGATACGAATTG . 48.0 10.0 97.0 0.0 . 96 . . Atlas-SNP COL22A1 169044 hgsc.bcm.edu 37 8 139856352 139856352 + Silent SNP G G T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . COL22A1 NM_152888 exon4 c.C708A p.T236T TCCATTGGTGTGC . 64.0 20.0 79.0 0.0 . 390 . . Atlas-SNP VCP 7415 hgsc.bcm.edu 37 9 35068306 35068306 + Missense_Mutation SNP T T G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . VCP NM_007126 exon2 c.A71C p.N24T AACCGATTGGGAC . 59.0 25.0 73.0 0.0 . 64 . . Atlas-SNP COL5A1 1289 hgsc.bcm.edu 37 9 137703411 137703411 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . COL5A1 NM_000093 exon46 c.G3656A p.G1219D CCAGAGGCTTTCC . 117.0 45.0 132.0 0.0 . 323 . . Atlas-SNP ANAPC2 29882 hgsc.bcm.edu 37 9 140077646 140077646 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . ANAPC2 NM_013366 exon6 c.C1217T p.A406V CGCAGCGCCTTGA . 104.0 40.0 101.0 0.0 . 57 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu 37 10 17113430 17113430 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . CUBN NM_001081 exon19 c.G2620A p.V874I CCTCAACATAATC . 69.0 6.0 116.0 0.0 . 515 . . Atlas-SNP KIAA1217 56243 hgsc.bcm.edu 37 10 24727389 24727389 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . KIAA1217 NM_019590 exon5 c.C827T p.T276I CAAAAACTATGAA . 69.0 27.0 104.0 0.0 . 235 . . Atlas-SNP GRID1 2894 hgsc.bcm.edu 37 10 87966273 87966273 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f GRID1,extremity,malignant_melanoma,0,1 GRID1 NM_017551 exon3 c.C368T p.S123L CGTGGCGACCCTC . 94.0 36.0 88.0 0.0 . 204 1 . Atlas-SNP PDZD7 79955 hgsc.bcm.edu 37 10 102770318 102770318 + Missense_Mutation SNP G G T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . PDZD7 NM_001195263 exon15 c.C2328A p.S776R GCTACGGCTGCGG . 438.0 216.0 362.0 0.0 . 101 . . Atlas-SNP MUC2 4583 hgsc.bcm.edu 37 11 1093375 1093375 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . MUC2 NM_002457 exon30 c.C5194T p.P1732S GTGACCCCAACCC . 39.0 5.0 39.0 0.0 . 614 . . Atlas-SNP MYEOV 26579 hgsc.bcm.edu 37 11 69063143 69063143 + Missense_Mutation SNP T T C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . MYEOV NM_138768 exon3 c.T226C p.S76P GGCAGATCCCGGG . 73.0 36.0 66.0 0.0 . 42 . . Atlas-SNP ALG9 79796 hgsc.bcm.edu 37 11 111742145 111742145 + Missense_Mutation SNP C C G rs200786242 TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . ALG9 NM_001077690 exon2 c.G61C p.A21P CCGGGGCGCGTAT . 759.0 35.0 650.0 0.0 . 77 . . Atlas-SNP APOA1 335 hgsc.bcm.edu 37 11 116706843 116706843 + Missense_Mutation SNP T T G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . APOA1 NM_000039 exon4 c.A485C p.Q162P TTCTCTTGCAGCT . 40.0 18.0 51.0 0.0 . 19 . . Atlas-SNP CEP164 22897 hgsc.bcm.edu 37 11 117222658 117222658 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f CEP164,caecum,carcinoma,0,1 CEP164 NM_001271933 exon4 c.A347G p.K116R AAAAAAAGGAAAA . 53.0 3.0 87.0 0.0 . 121 1 . Atlas-SNP PLEKHG6 55200 hgsc.bcm.edu 37 12 6424240 6424240 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . PLEKHG6 NM_001144856 exon4 c.C364T p.P122S CGGCTGCCCCCTG . 47.0 16.0 61.0 0.0 . 62 . . Atlas-SNP CLEC2D 29121 hgsc.bcm.edu 37 12 9833543 9833543 + Missense_Mutation SNP C C G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . CLEC2D NM_001004419 exon2 c.C86G p.S29C AGCATTCTATTAA . 26.0 8.0 72.0 0.0 . 54 . . Atlas-SNP TMBIM6 7009 hgsc.bcm.edu 37 12 50153095 50153095 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . TMBIM6 NM_001098576 exon8 c.A779G p.D260G ATCAAGATTATAT . 36.0 16.0 67.0 0.0 . 26 . . Atlas-SNP INHBE 83729 hgsc.bcm.edu 37 12 57850023 57850023 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . INHBE NM_031479 exon2 c.A445G p.R149G CCAAGGAGGAGGC . 69.0 31.0 102.0 0.0 . 38 . . Atlas-SNP EXOC5 10640 hgsc.bcm.edu 37 14 57686092 57686092 + Missense_Mutation SNP T T C rs370435401 TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f EXOC5,NS,carcinoma,+2,1 EXOC5 NM_006544 exon14 c.A1474G p.I492V GAAAAATAGTATT . 149.0 54.0 404.0 1.0 . 45 1 . Atlas-SNP IFT43 112752 hgsc.bcm.edu 37 14 76488730 76488730 + Missense_Mutation SNP G G T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . IFT43 NM_001102564 exon3 c.G208T p.A70S GTGAAGGCTTCGA . 60.0 43.0 192.0 0.0 . 63 . . Atlas-SNP RTF1 23168 hgsc.bcm.edu 37 15 41771302 41771302 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . RTF1 NM_015138 exon16 c.C1820T p.S607F CTCAGTCCAGAGA . 60.0 20.0 68.0 0.0 . 76 . . Atlas-SNP TYRO3 7301 hgsc.bcm.edu 37 15 41854916 41854916 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . TYRO3 NM_006293 exon4 c.G580A p.G194R GTAACAGGTGAGC . 45.0 19.0 55.0 0.0 . 169 . . Atlas-SNP TLN2 83660 hgsc.bcm.edu 37 15 62999360 62999360 + Nonsense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . TLN2 NM_015059 exon17 c.C2080T p.Q694X GTTGCCCAAGTGG . 64.0 21.0 92.0 0.0 . 253 . . Atlas-SNP PDIA2 64714 hgsc.bcm.edu 37 16 336642 336642 + Silent SNP T T C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . PDIA2 NM_006849 exon9 c.T1329C p.I443I CATCATTGCTGAG . 60.0 20.0 90.0 0.0 . 51 . . Atlas-SNP SRL 6345 hgsc.bcm.edu 37 16 4242284 4242284 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . SRL NM_001098814 exon6 c.T1292C p.I431T CGCTCAATCTTCT . 111.0 56.0 140.0 0.0 . 56 . . Atlas-SNP USP7 7874 hgsc.bcm.edu 37 16 8992449 8992449 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . USP7 NM_003470 exon24 c.C2579T p.T860I CTTAAAGTACCTT . 33.0 14.0 62.0 0.0 . 116 . . Atlas-SNP PDXDC1 23042 hgsc.bcm.edu 37 16 15069069 15069069 + Silent SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . PDXDC1 NM_015027 exon1 c.C13T p.L5L GCGTCCCTGGAGA . 105.0 53.0 52.0 0.0 . 59 . . Atlas-SNP CDH15 1013 hgsc.bcm.edu 37 16 89260253 89260253 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . CDH15 NM_004933 exon13 c.C2083T p.R695C CAGGGCCGCCTGC . 86.0 42.0 100.0 0.0 . 54 . . Atlas-SNP MPDU1 9526 hgsc.bcm.edu 37 17 7490856 7490856 + Missense_Mutation SNP A A C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . MPDU1 NM_004870 exon7 c.A731C p.K244T AGCAGAAAAAGGC . 35.0 28.0 65.0 0.0 . 14 . . Atlas-SNP PER1 5187 hgsc.bcm.edu 37 17 8049752 8049752 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . PER1 NM_002616 exon16 c.C1976T p.T659I GAGGAGGTGGTAT . 26.0 14.0 48.0 0.0 . 104 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu 37 17 11797765 11797765 + Silent SNP C C A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f DNAH9,NS,carcinoma,0,1 DNAH9 NM_001372 exon59 c.C11358A p.T3786T GGGCACCGCCAGC . 15.0 11.0 47.0 0.0 . 695 1 . Atlas-SNP SARM1 23098 hgsc.bcm.edu 37 17 26723213 26723213 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f SARM1,colon,carcinoma,-1,1 SARM1 NM_015077 exon10 c.A2080G p.I694V GAGAAGATCATCC . 69.0 35.0 48.0 0.0 . 40 1 . Atlas-SNP SARM1 23098 hgsc.bcm.edu 37 17 26723216 26723216 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . SARM1 NM_015077 exon10 c.A2083G p.I695V AAGATCATCCGCT . 63.0 32.0 45.0 0.0 . 40 . . Atlas-SNP KRT20 54474 hgsc.bcm.edu 37 17 39036387 39036387 + Missense_Mutation SNP T T A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . KRT20 NM_019010 exon4 c.A757T p.N253Y GAAGGTTCTTCTG . 53.0 33.0 69.0 0.0 . 38 . . Atlas-SNP CDC27 996 hgsc.bcm.edu 37 17 45234727 45234727 + Missense_Mutation SNP T T A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f CDC27_ENST00000531206,NS,carcinoma,+2,10 CDC27 NM_001114091 exon6 c.A499T p.T167S TAAATGTTTGGTC . 95.0 4.0 126.0 2.0 . 337 10 . Atlas-SNP NAT9 26151 hgsc.bcm.edu 37 17 72767893 72767893 + Silent SNP A A C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . NAT9 NM_015654 exon7 c.T594G p.P198P TCTGTAAGGCTTC . 52.0 16.0 58.0 0.0 . 16 . . Atlas-SNP NPLOC4 55666 hgsc.bcm.edu 37 17 79536080 79536080 + Missense_Mutation SNP A A C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . NPLOC4 NM_017921 exon14 c.T1411G p.F471V TAGGAAATGGATT . 121.0 61.0 129.0 0.0 . 27 . . Atlas-SNP EPB41L3 23136 hgsc.bcm.edu 37 18 5396258 5396258 + Missense_Mutation SNP G G C rs79592897 bycluster;by1000genomes;alternate_allele TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . EPB41L3 NM_012307 exon19 c.C2915G p.T972R TCCTTCGTGGAAA . 42.0 16.0 104.0 0.0 . 222 . G|0.998;A|0.002 Atlas-SNP CBLN2 147381 hgsc.bcm.edu 37 18 70205486 70205486 + Silent SNP G G C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f CBLN2,NS,carcinoma,-1,1 CBLN2 NM_182511 exon5 c.C600G p.L200L AAGTTTGAGATGC . 77.0 34.0 108.0 0.0 . 41 1 . Atlas-SNP CIRBP 1153 hgsc.bcm.edu 37 19 1271585 1271585 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . CIRBP NM_001280 exon5 c.G385A p.E129K CGGTTCGAGTCCA . 58.0 23.0 61.0 0.0 . 19 . . Atlas-SNP TMED1 11018 hgsc.bcm.edu 37 19 10945612 10945612 + Missense_Mutation SNP T T G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . TMED1 NM_006858 exon3 c.A463C p.K155Q ACACCTTGATGTC . 44.0 17.0 61.0 0.0 . 22 . . Atlas-SNP TMED1 11018 hgsc.bcm.edu 37 19 10945625 10945625 + Missense_Mutation SNP T T G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . TMED1 NM_006858 exon3 c.A450C p.K150N CTCCATTTTAACA . 43.0 15.0 60.0 0.0 . 22 . . Atlas-SNP SLC5A5 6528 hgsc.bcm.edu 37 19 18001706 18001706 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . SLC5A5 NM_000453 exon14 c.C1663T p.R555C ACCAAGCGCAGCA . 53.0 22.0 60.0 0.0 . 67 . . Atlas-SNP LSR 51599 hgsc.bcm.edu 37 19 35758280 35758280 + Silent SNP A A G rs112715995 bycluster TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . LSR NM_205834 exon9 c.A1557G p.R519R TGGGAGAAGCCGG . 83.0 9.0 94.0 0.0 . 60 . . Atlas-SNP FFAR2 2867 hgsc.bcm.edu 37 19 35940857 35940857 + Missense_Mutation SNP G G T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . FFAR2 NM_005306 exon1 c.G241T p.V81F AAGGTCGTCTGCG . 57.0 26.0 39.0 0.0 . 39 . . Atlas-SNP NAPA 8775 hgsc.bcm.edu 37 19 47995285 47995285 + Missense_Mutation SNP A A C rs149012477 byfrequency;alternate_allele TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . NAPA NM_003827 exon8 c.T653G p.M218R TTGAGCATGTCGA . 48.0 18.0 51.0 0.0 . 34 . A|1.000;G|0.000 Atlas-SNP TPRX1 284355 hgsc.bcm.edu 37 19 48305624 48305624 + Missense_Mutation SNP A A T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . TPRX1 NM_198479 exon2 c.T644A p.I215N CCTGAGATTGGGC . 71.0 31.0 12.0 0.0 . 46 . . Atlas-SNP TPRX1 284355 hgsc.bcm.edu 37 19 48305638 48305638 + Silent SNP T T C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f TPRX1,NS,carcinoma,0,1 TPRX1 NM_198479 exon2 c.A630G p.P210P TGAGATTGGGCCT . 79.0 23.0 61.0 0.0 . 46 1 . Atlas-SNP IZUMO1 284359 hgsc.bcm.edu 37 19 49244664 49244664 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . IZUMO1 NM_182575 exon9 c.T826C p.S276P TGGACGACTCCGT . 35.0 19.0 53.0 0.0 . 30 . . Atlas-SNP VSIG10L 147645 hgsc.bcm.edu 37 19 51844521 51844521 + Silent SNP G G T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . VSIG10L NM_001163922 exon2 c.C781A p.R261R CCCCCCGGGCCTG . 73.0 31.0 44.0 0.0 . 40 . . Atlas-SNP NLRP7 199713 hgsc.bcm.edu 37 19 55452329 55452329 + Missense_Mutation SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . NLRP7 NM_001127255 exon3 c.G322A p.A108T CTTCTGCATCTCC . 37.0 10.0 55.0 0.0 . 411 . . Atlas-SNP DEFB129 140881 hgsc.bcm.edu 37 20 210326 210326 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f DEFB129,NS,carcinoma,0,2 DEFB129 NM_080831 exon2 c.G466A p.A156T GATTCTGCCACTG . 28.0 11.0 62.0 0.0 . 24 2 . Atlas-SNP SLC32A1 140679 hgsc.bcm.edu 37 20 37357190 37357190 + Missense_Mutation SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . SLC32A1 NM_080552 exon2 c.A1486G p.I496V GTCGCCATCTTCG . 104.0 42.0 123.0 0.0 . 81 . . Atlas-SNP EWSR1 2130 hgsc.bcm.edu 37 22 29695754 29695754 + Missense_Mutation SNP G G A rs201365388 TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f EWSR1_ENST00000414183,brain,glioma,0,2 EWSR1 NM_013986 exon17 c.G1859A p.R620Q GAAGACGAGGTGG . 79.0 5.0 84.0 0.0 . 104 2 G|0.994;A|0.006 Atlas-SNP EWSR1 2130 hgsc.bcm.edu 37 22 29695793 29695793 + Missense_Mutation SNP A A C rs200316952 TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f EWSR1_ENST00000414183,NS,carcinoma,0,5 EWSR1 NM_013986 exon17 c.A1898C p.Q633P TGGAACAGATGGG . 77.0 5.0 82.0 0.0 . 104 5 A|0.997;C|0.003 Atlas-SNP TST 7263 hgsc.bcm.edu 37 22 37407302 37407302 + Silent SNP A A G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . TST NM_003312 exon3 c.T660C p.D220D GAAGCCATCCTCA . 102.0 50.0 90.0 0.0 . 22 . . Atlas-SNP TRIOBP 11078 hgsc.bcm.edu 37 22 38120691 38120691 + Missense_Mutation SNP T T G novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f TRIOBP_ENST00000344404,NS,carcinoma,0,1 TRIOBP NM_001039141 exon7 c.T2128G p.S710A GCCTCCTCTCCTA . 149.0 57.0 157.0 0.0 . 262 1 . Atlas-SNP MICALL1 85377 hgsc.bcm.edu 37 22 38302534 38302534 + Silent SNP G G T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . MICALL1 NM_033386 exon1 c.G105T p.L35L CGGCCTGGCCTTC . 37.0 14.0 23.0 0.0 . 53 . . Atlas-SNP KAL1 3730 hgsc.bcm.edu 37 X 8553366 8553366 + Silent SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . KAL1 NM_000216 exon6 c.G798A p.V266V CACATTCACAGCA . 31.0 25.0 34.0 0.0 . 78 . . Atlas-SNP HEPH 9843 hgsc.bcm.edu 37 X 65408259 65408259 + Silent SNP C C T novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . HEPH NM_138737 exon5 c.C846T p.L282L CTTCCTCCTCTTC . 69.0 64.0 138.0 0.0 . 224 . . Atlas-SNP MED12 9968 hgsc.bcm.edu 37 X 70349274 70349274 + Missense_Mutation SNP T T A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . MED12 NM_005120 exon26 c.T3686A p.V1229E TGTTTGTACTTGG . 44.0 36.0 43.0 0.0 . 984 . . Atlas-SNP COL4A5 1287 hgsc.bcm.edu 37 X 107925029 107925029 + Missense_Mutation SNP T T C novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . COL4A5 NM_000495 exon45 c.T4109C p.I1370T GTATCATAATTAA . 71.0 55.0 129.0 0.0 . 262 . . Atlas-SNP TENM1 10178 hgsc.bcm.edu 37 X 123514834 123514834 + Missense_Mutation SNP T T A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . . NM_001163278 exon32 c.A7751T p.K2584M CCAAGCTTAATGA . 67.0 61.0 103.0 0.0 . . . . Atlas-SNP ND5 0 hgsc.bcm.edu 37 MT 12835 12835 + Missense_Mutation SNP G G A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . . ENST00000361567 exon1 c.G499A p.A167T AACACAGCAGCCA . 110.0 6.0 8.0 0.0 . . . . Atlas-SNP PHTF1 10745 hgsc.bcm.edu 37 1 114249252 114249253 + Frame_Shift_Ins INS - - A novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . PHTF1 NM_006608 exon11 c.1362_1363insT p.M454fs . . 162.0 57.0 349.0 0.0 . 69 . . Atlas-Indel CDKN1B 1027 hgsc.bcm.edu 37 12 12871044 12871044 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . CDKN1B NM_004064 exon1 c.270delA p.R90fs . . 519.0 190.0 651.0 0.0 . 48 . . Atlas-Indel NOX5 79400 hgsc.bcm.edu 37 15 69329420 69329432 + Frame_Shift_Del DEL TTCATGGGCCCAA TTCATGGGCCCAA - novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 TTCATGGGCCCAA TTCATGGGCCCAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . NOX5 NM_024505 exon8 c.1240_1252del p.414_418del . . 76.0 16.0 132.0 0.0 . 60 . . Atlas-Indel REEP6 92840 hgsc.bcm.edu 37 19 1495318 1495341 + In_Frame_Del DEL TCTGCTGTTCGGCTACGGAGCGTC TCTGCTGTTCGGCTACGGAGCGTC - novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 TCTGCTGTTCGGCTACGGAGCGTC TCTGCTGTTCGGCTACGGAGCGTC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . REEP6 NM_138393 exon2 c.140_163del p.47_55del . . 28.0 12.0 45.0 0.0 . 21 . . Atlas-Indel CD40 958 hgsc.bcm.edu 37 20 44756975 44756975 + Frame_Shift_Del DEL T T - novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f CD40,NS,carcinoma,0,1 CD40 NM_001250 exon8 c.652delG p.V218fs . . 87.0 10.0 95.0 0.0 . 33 1 . Atlas-Indel SUPT20HL1 100130302 hgsc.bcm.edu 37 X 24382442 24382453 + In_Frame_Del DEL TAGCTGCTGCTG TAGCTGCTGCTG - novel TCGA-DD-AACA-01A-11D-A40R-10 TCGA-DD-AACA-10A-01D-A40U-10 TAGCTGCTGCTG TAGCTGCTGCTG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fee6db1a-5aa7-490d-a841-3b5b430ec874 99678528-a049-4ed5-9eb9-d70563f8d53f . . NM_001136234 exon1 c.1564_1575del p.522_525del . . 78.0 18.0 87.0 0.0 . . . . Atlas-Indel