Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
FBLIM1	54751	hgsc.bcm.edu	hg19	1	16096974	16096974	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	FBLIM1	NM_001024215	exon5	c.C612G	p.Y204X	GCAGTACCATGCC	.	41.0	11.0	48.0	0.0	.	46	.	.	Atlas-SNP
EFCAB7	84455	hgsc.bcm.edu	hg19	1	64038167	64038167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	EFCAB7	NM_032437	exon14	c.A1870G	p.I624V	TATTGTATATATT	.	487.0	81.0	447.0	0.0	.	45	.	.	Atlas-SNP
ADAMTSL4	54507	hgsc.bcm.edu	hg19	1	150529206	150529206	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ADAMTSL4	NM_019032	exon10	c.G1686A	p.R562R	TCCCAGGGAGGAG	.	84.0	7.0	57.0	0.0	.	101	.	.	Atlas-SNP
SPRR3	6707	hgsc.bcm.edu	hg19	1	152975594	152975594	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SPRR3	NM_001097589	exon2	c.T98G	p.F33C	AAATATTTGTTCC	.	172.0	58.0	144.0	0.0	.	45	.	.	Atlas-SNP
OR10K2	391107	hgsc.bcm.edu	hg19	1	158390017	158390017	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	OR10K2	NM_001004476	exon1	c.A640T	p.I214F	CCAAGATCAACAA	.	126.0	20.0	70.0	0.0	.	69	.	.	Atlas-SNP
DNM3	26052	hgsc.bcm.edu	hg19	1	172356431	172356431	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DNM3	NM_015569	exon19	c.C2217T	p.I739I	GGACATCAGCACA	.	111.0	9.0	75.0	0.0	.	85	.	.	Atlas-SNP
C4BPA	722	hgsc.bcm.edu	hg19	1	207288822	207288822	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	C4BPA	NM_000715	exon4	c.A390G	p.L130L	AGATTTATCTTTT	.	108.0	26.0	79.0	0.0	.	70	.	.	Atlas-SNP
CR1L	1379	hgsc.bcm.edu	hg19	1	207871016	207871016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	CR1L_ENST00000508064,colon,carcinoma,0,2	CR1L	NM_175710	exon6	c.G1031C	p.R344T	CCCCCAGATGTGA	.	471.0	67.0	303.0	0.0	.	97	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216363610	216363610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	USH2A	NM_007123	exon20	c.G4351T	p.G1451C	CACAACCAACTGA	.	94.0	19.0	60.0	0.0	.	1168	.	.	Atlas-SNP
ITPKB	3707	hgsc.bcm.edu	hg19	1	226829808	226829808	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ITPKB	NM_002221	exon5	c.G2265A	p.E755E	CGTGAGCTCCTCC	.	68.0	8.0	40.0	0.0	.	158	.	.	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	hg19	1	232607246	232607246	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SIPA1L2	NM_020808	exon6	c.A2114T	p.D705V	ACGATGTCATTTC	.	99.0	20.0	102.0	0.0	.	218	.	.	Atlas-SNP
SMYD3	64754	hgsc.bcm.edu	hg19	1	246021833	246021833	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SMYD3	NM_001167740	exon10	c.C1041T	p.A347A	GAACAAGGCTTCC	.	121.0	12.0	95.0	0.0	.	77	.	.	Atlas-SNP
SOX11	6664	hgsc.bcm.edu	hg19	2	5834087	5834087	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	SOX11,colon,carcinoma,0,3	SOX11	NM_003108	exon1	c.G1234T	p.E412X	CACTTCGAGTTCC	.	70.0	19.0	59.0	1.0	.	69	.	.	Atlas-SNP
PUM2	23369	hgsc.bcm.edu	hg19	2	20454712	20454712	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PUM2	NM_015317	exon18	c.C2782T	p.L928L	GTTCCAGTACATG	.	204.0	45.0	227.0	0.0	.	91	.	.	Atlas-SNP
GTF3C2	2976	hgsc.bcm.edu	hg19	2	27559284	27559284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	GTF3C2	NM_001521	exon9	c.C1136T	p.S379F	GTGATCGAGCTAA	.	62.0	9.0	86.0	0.0	.	73	.	.	Atlas-SNP
ZFP36L2	678	hgsc.bcm.edu	hg19	2	43451848	43451848	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZFP36L2	NM_006887	exon2	c.C1095T	p.F365F	CGGACCGAAGGCG	.	26.0	8.0	9.0	0.0	.	56	.	.	Atlas-SNP
FER1L5	90342	hgsc.bcm.edu	hg19	2	97370374	97370374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	FER1L5	NM_001113382	exon52	c.G6227T	p.G2076V	ACCCAGGACCCAC	.	135.0	27.0	151.0	0.0	.	113	.	.	Atlas-SNP
BIN1	274	hgsc.bcm.edu	hg19	2	127806198	127806198	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	BIN1	NM_139343	exon19	c.G1686A	p.W562X	CATGAGCCAGCCT	.	89.0	22.0	101.0	0.0	.	85	.	.	Atlas-SNP
IWS1	55677	hgsc.bcm.edu	hg19	2	128262855	128262855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	IWS1	NM_017969	exon3	c.G624T	p.M208I	ATCACTCATTCGA	.	149.0	31.0	159.0	0.0	.	61	.	.	Atlas-SNP
EVX2	344191	hgsc.bcm.edu	hg19	2	176945497	176945497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	EVX2	NM_001080458	exon3	c.G769A	p.D257N	TGGGGTCGGCTGG	.	17.0	8.0	32.0	0.0	.	51	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179410949	179410949	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TTN	NM_001267550	exon342	c.C95109T	p.V31703V	CACTTTGACCATG	.	70.0	11.0	55.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179431181	179431181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	TTN_ENST00000359218,trunk,malignant_melanoma,0,4	TTN	NM_001267550	exon326	c.A79678G	p.K26560E	GTATTTTATACTC	.	47.0	10.0	80.0	0.0	.	18412	.	.	Atlas-SNP
ZNF385B	151126	hgsc.bcm.edu	hg19	2	180308145	180308145	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZNF385B	NM_152520	exon10	c.C1248G	p.F416L	GGACAGGAAGGCT	.	19.0	5.0	45.0	0.0	.	68	.	.	Atlas-SNP
STAT4	6775	hgsc.bcm.edu	hg19	2	192011406	192011406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	STAT4	NM_001243835	exon3	c.G206T	p.G69V	ACACGACCTAACT	.	108.0	15.0	98.0	0.0	.	85	.	.	Atlas-SNP
SLC11A1	6556	hgsc.bcm.edu	hg19	2	219254739	219254739	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SLC11A1	NM_000578	exon9	c.C942T	p.T314T	GAAAACCAACCAG	.	75.0	20.0	79.0	0.0	.	41	.	.	Atlas-SNP
FYCO1	79443	hgsc.bcm.edu	hg19	3	46006599	46006599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	FYCO1	NM_024513	exon9	c.A3076G	p.K1026E	GGCTCTTGCACTC	.	27.0	6.0	24.0	0.0	.	115	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52441263	52441263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	BAP1,uveal_tract,malignant_melanoma,0,2	BAP1	NM_004656	exon7	c.C507G	p.H169Q	GACAAAGTGGAAC	.	55.0	32.0	85.0	0.0	.	371	.	.	Atlas-SNP
GPR128	84873	hgsc.bcm.edu	hg19	3	100328724	100328724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	GPR128	NM_032787	exon1	c.C24A	p.N8K	CTGGAACCTTAGG	.	158.0	24.0	195.0	0.0	.	126	.	.	Atlas-SNP
NXPE3	91775	hgsc.bcm.edu	hg19	3	101540508	101540508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	.	NM_145037	exon8	c.C1390T	p.R464C	AACATCCGTCGAG	.	55.0	12.0	76.0	0.0	.	.	.	.	Atlas-SNP
STXBP5L	9515	hgsc.bcm.edu	hg19	3	120959330	120959330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	STXBP5L	NM_014980	exon14	c.C1376G	p.T459R	CACAAACATATCC	.	34.0	6.0	38.0	0.0	.	159	.	.	Atlas-SNP
PTTG2	10744	hgsc.bcm.edu	hg19	4	37962607	37962607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PTTG2	NM_006607	exon1	c.G552T	p.K184N	CTTCAAGCATTCT	.	63.0	14.0	68.0	0.0	.	15	.	.	Atlas-SNP
PARM1	25849	hgsc.bcm.edu	hg19	4	75971416	75971416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PARM1	NM_015393	exon4	c.T892C	p.S298P	TACGGGTCCTGGG	.	109.0	35.0	140.0	0.0	.	52	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88534393	88534393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DSPP	NM_014208	exon4	c.G1055T	p.S352I	GAGAAAGCAAACG	.	125.0	31.0	151.0	0.0	.	174	.	.	Atlas-SNP
SLC39A8	64116	hgsc.bcm.edu	hg19	4	103225548	103225548	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SLC39A8	NM_022154	exon5	c.T766A	p.C256S	CATAGCATGTCAC	.	111.0	26.0	104.0	0.0	.	24	.	.	Atlas-SNP
SLC9A3	6550	hgsc.bcm.edu	hg19	5	481731	481731	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SLC9A3	NM_004174	exon9	c.C1466G	p.S489W	ATGGCCGAGAGGA	.	90.0	4.0	50.0	0.0	.	89	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13866359	13866359	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DNAH5	NM_001369	exon26	c.G4086A	p.Q1362Q	GGCTTCCTGGGGC	.	271.0	34.0	198.0	0.0	.	868	.	.	Atlas-SNP
ZFYVE16	9765	hgsc.bcm.edu	hg19	5	79734325	79734325	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZFYVE16	NM_001105251	exon4	c.T1821C	p.N607N	AGAAAATGGCCTT	.	210.0	24.0	190.0	0.0	.	100	.	.	Atlas-SNP
TCF7	6932	hgsc.bcm.edu	hg19	5	133473769	133473769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TCF7	NM_003202	exon4	c.C461A	p.P154H	AGCCCCCCCACGG	.	194.0	38.0	162.0	0.0	.	81	.	.	Atlas-SNP
REEP2	51308	hgsc.bcm.edu	hg19	5	137780127	137780127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	REEP2	NM_016606	exon4	c.A206C	p.K69T	AACTGAAGATCGC	.	65.0	11.0	45.0	0.0	.	21	.	.	Atlas-SNP
PCDHA8	56140	hgsc.bcm.edu	hg19	5	140221574	140221574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PCDHA8	NM_031856	exon1	c.C668A	p.T223K	AGCTCACAGGCAC	.	138.0	9.0	127.0	0.0	.	366	.	.	Atlas-SNP
ABCF1	23	hgsc.bcm.edu	hg19	6	30557649	30557649	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ABCF1	NM_001025091	exon22	c.C2131T	p.L711L	GAGTACCTGCAGC	.	93.0	16.0	68.0	0.0	.	61	.	.	Atlas-SNP
KCNK16	83795	hgsc.bcm.edu	hg19	6	39286882	39286882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	KCNK16	NM_001135106	exon2	c.G241A	p.V81M	GGTTCACACCTTT	.	34.0	5.0	41.0	0.0	.	59	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56341127	56341127	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DST	NM_015548	exon73	c.C13815T	p.A4605A	TGCCCAGGCCAGC	.	64.0	15.0	65.0	0.0	.	1427	.	.	Atlas-SNP
CD109	135228	hgsc.bcm.edu	hg19	6	74502505	74502505	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CD109	NM_133493	exon23	c.C2858G	p.A953G	AAAAAGCTCTTTC	.	29.0	6.0	23.0	0.0	.	170	.	.	Atlas-SNP
RNGTT	8732	hgsc.bcm.edu	hg19	6	89554193	89554193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	RNGTT	NM_003800	exon11	c.A1152G	p.I384M	TCGTTCTATACAC	.	46.0	13.0	84.0	0.0	.	52	.	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	hg19	6	144875994	144875994	+	Silent	SNP	C	C	A	rs375508056	alternate_allele	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	UTRN	NM_007124	exon48	c.C7099A	p.R2367R	GCCCGACGGGATC	.	88.0	20.0	111.0	0.0	.	327	.	.	Atlas-SNP
USP42	84132	hgsc.bcm.edu	hg19	7	6187455	6187455	+	Missense_Mutation	SNP	C	C	T	rs377573018		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	USP42	NM_032172	exon12	c.C1318T	p.R440W	AGTCAGCGGGTTG	.	62.0	4.0	63.0	0.0	.	138	.	.	Atlas-SNP
CPSF4	10898	hgsc.bcm.edu	hg19	7	99045802	99045802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CPSF4	NM_001081559	exon3	c.G213T	p.W71C	ACACTGGCTGCGT	.	118.0	43.0	121.0	0.0	.	24	.	.	Atlas-SNP
MLL5	55904	hgsc.bcm.edu	hg19	7	104742001	104742001	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MLL5	NM_018682	exon15	c.G1852C	p.D618H	TGTAAAGATACAC	.	41.0	6.0	46.0	0.0	.	173	.	.	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142562074	142562074	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	EPHB6	NM_004445	exon7	c.C516T	p.S172S	CTCCTCCTCTTCT	.	124.0	9.0	53.0	0.0	.	168	.	.	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151849960	151849960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MLL3	NM_170606	exon49	c.C12356T	p.P4119L	ACATCTGGAGCAC	.	139.0	27.0	139.0	0.0	.	1564	.	.	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	hg19	8	30702749	30702749	+	Missense_Mutation	SNP	G	G	A	rs115550830	bycluster;by1000genomes;alternate_allele	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TEX15	NM_031271	exon1	c.C3785T	p.A1262V	GTTTTCGCCTTTG	.	45.0	17.0	101.0	0.0	.	350	.	G|0.999;C|0.001	Atlas-SNP
IL33	90865	hgsc.bcm.edu	hg19	9	6241766	6241766	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	IL33	NM_001199640	exon2	c.C72T	p.A24A	CAAAGCCTTGTGT	.	110.0	51.0	131.0	0.0	.	27	.	.	Atlas-SNP
C5	727	hgsc.bcm.edu	hg19	9	123768307	123768307	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	C5	NM_001735	exon20	c.A2452T	p.K818X	ACACCTTTGCCTT	.	96.0	18.0	93.0	0.0	.	124	.	.	Atlas-SNP
OR1J2	26740	hgsc.bcm.edu	hg19	9	125273953	125273953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	OR1J2	NM_054107	exon1	c.C873G	p.S291R	CTACAGCCTTAGG	.	120.0	29.0	134.0	0.0	.	64	.	.	Atlas-SNP
OR1N2	138882	hgsc.bcm.edu	hg19	9	125315781	125315781	+	Silent	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	OR1N2	NM_001004457	exon1	c.T333C	p.Y111Y	CTCGTATTCTGGG	.	59.0	19.0	59.0	0.0	.	51	.	.	Atlas-SNP
WDR37	22884	hgsc.bcm.edu	hg19	10	1149723	1149723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	WDR37,NS,NS,0,10	WDR37	NM_014023	exon10	c.G908T	p.R303L	GGGACCGGACGGC	.	55.0	11.0	40.0	0.0	.	52	.	.	Atlas-SNP
AKR1C3	8644	hgsc.bcm.edu	hg19	10	5139644	5139644	+	Silent	SNP	C	C	A	rs118150330	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	AKR1C3	NM_001253908	exon3	c.C271A	p.R91R	TTTCATCGACCAG	.	155.0	27.0	159.0	0.0	.	21	.	C|0.999;T|0.001	Atlas-SNP
ARL5B	221079	hgsc.bcm.edu	hg19	10	18957556	18957556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ARL5B	NM_178815	exon3	c.G205A	p.G69S	ATTGGTGGTCAGG	.	79.0	18.0	91.0	0.0	.	12	.	.	Atlas-SNP
TACR2	6865	hgsc.bcm.edu	hg19	10	71166949	71166949	+	Missense_Mutation	SNP	C	C	G	rs200848530	alternate_allele	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TACR2	NM_001057	exon4	c.G829C	p.E277Q	TGTCCTCCTGGAA	.	115.0	35.0	74.0	0.0	.	37	.	.	Atlas-SNP
CYP2C9	1559	hgsc.bcm.edu	hg19	10	96709012	96709012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CYP2C9	NM_000771	exon5	c.A790G	p.I264V	GACTTTATTGATT	.	268.0	55.0	250.0	0.0	.	82	.	.	Atlas-SNP
CALY	50632	hgsc.bcm.edu	hg19	10	135140487	135140487	+	Silent	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CALY	NM_015722	exon4	c.C255A	p.T85T	CCGTGCGGTGGGC	.	101.0	37.0	83.0	0.0	.	19	.	.	Atlas-SNP
ATHL1	80162	hgsc.bcm.edu	hg19	11	290808	290808	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ATHL1	NM_025092	exon4	c.C601G	p.L201V	GACTTCCTGACAG	.	31.0	6.0	31.0	0.0	.	88	.	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	606503	606503	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PHRF1	NM_020901	exon13	c.C1513T	p.L505L	GACCTGCTGGGCA	.	33.0	19.0	26.0	0.0	.	188	.	.	Atlas-SNP
EIF4G2	1982	hgsc.bcm.edu	hg19	11	10824597	10824597	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	EIF4G2	NM_001172705	exon11	c.A976G	p.I326V	GACGAATTTGATT	.	62.0	4.0	65.0	0.0	.	89	.	.	Atlas-SNP
PIK3C2A	5286	hgsc.bcm.edu	hg19	11	17191175	17191175	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PIK3C2A	NM_002645	exon1	c.T114C	p.A38A	TGCTAAAGCCTCT	.	92.0	17.0	64.0	0.0	.	148	.	.	Atlas-SNP
MYBPC3	4607	hgsc.bcm.edu	hg19	11	47364195	47364195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MYBPC3	NM_000256	exon16	c.G1558A	p.E520K	CGTCCTCCAGCAT	.	105.0	25.0	124.0	0.0	.	102	.	.	Atlas-SNP
MS4A3	932	hgsc.bcm.edu	hg19	11	59837694	59837694	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MS4A3	NM_006138	exon7	c.C633T	p.P211P	ACCTCCCAATTCT	.	61.0	12.0	74.0	0.0	.	47	.	.	Atlas-SNP
MSANTD4	84437	hgsc.bcm.edu	hg19	11	105881627	105881627	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	.	NM_032424	exon2	c.A18T	p.R6S	CCTTTTTCTTTTC	.	89.0	10.0	89.0	0.0	.	.	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43837682	43837682	+	Silent	SNP	A	A	G	rs370946000		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ADAMTS20	NM_025003	exon16	c.T2202C	p.Y734Y	AACATTATAACCT	.	81.0	14.0	75.0	0.0	.	635	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57573867	57573867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	LRP1	NM_002332	exon31	c.G5179A	p.A1727T	AGCATGGCCAACA	.	62.0	10.0	40.0	0.0	.	428	.	.	Atlas-SNP
UNG	7374	hgsc.bcm.edu	hg19	12	109535499	109535499	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	UNG	NM_080911	exon1	c.G15A	p.K5K	CCAGAAGACGCTC	.	223.0	46.0	162.0	0.0	.	30	.	.	Atlas-SNP
OAS2	4939	hgsc.bcm.edu	hg19	12	113444239	113444239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	OAS2	NM_002535	exon8	c.C1490A	p.T497K	GCTCCACACCCAG	.	64.0	12.0	49.0	0.0	.	86	.	.	Atlas-SNP
DACH1	1602	hgsc.bcm.edu	hg19	13	72049304	72049304	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	DACH1,right_upper_lobe,carcinoma,0,1	DACH1	NM_080759	exon10	c.C2058T	p.G686G	TCTGCCGCCACTG	.	60.0	9.0	68.0	0.0	.	123	.	.	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	hg19	13	76397962	76397962	+	Missense_Mutation	SNP	T	T	G	rs200869696	bycluster;alternate_allele	TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	LMO7	NM_015842	exon12	c.T2203G	p.S735A	TCTGAATCTGGAG	.	83.0	21.0	148.0	0.0	.	334	.	T|0.999;C|0.001	Atlas-SNP
SOX21	11166	hgsc.bcm.edu	hg19	13	95363656	95363656	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	SOX21,NS,carcinoma,0,1	SOX21	NM_007084	exon1	c.C648T	p.A216A	GGCGGCGGCCGCC	.	20.0	2.0	8.0	0.0	.	21	.	.	Atlas-SNP
DNAJC3	5611	hgsc.bcm.edu	hg19	13	96409903	96409903	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DNAJC3	NM_006260	exon5	c.A399G	p.K133K	GCTCAAATCTAAT	.	36.0	8.0	47.0	0.0	.	38	.	.	Atlas-SNP
IL25	64806	hgsc.bcm.edu	hg19	14	23842468	23842468	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	IL25	NM_022789	exon1	c.C141T	p.T47T	GGACACCTCTGAG	.	39.0	11.0	39.0	0.0	.	21	.	.	Atlas-SNP
CPNE6	9362	hgsc.bcm.edu	hg19	14	24545726	24545726	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CPNE6	NM_006032	exon13	c.C1125G	p.D375E	CCATGACTTTGCT	.	51.0	13.0	47.0	0.0	.	40	.	.	Atlas-SNP
HEATR5A	25938	hgsc.bcm.edu	hg19	14	31819906	31819906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	HEATR5A	NM_015473	exon17	c.A2429G	p.Q810R	AAAAGCTGTTCCA	.	28.0	8.0	45.0	0.0	.	181	.	.	Atlas-SNP
PLEKHG3	26030	hgsc.bcm.edu	hg19	14	65208636	65208636	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PLEKHG3	NM_015549	exon14	c.C2233G	p.P745A	GACCCACCTCCCA	.	46.0	9.0	59.0	0.0	.	89	.	.	Atlas-SNP
PLEKHG3	26030	hgsc.bcm.edu	hg19	14	65208637	65208637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PLEKHG3	NM_015549	exon14	c.C2234T	p.P745L	ACCCACCTCCCAT	.	46.0	9.0	59.0	0.0	.	89	.	.	Atlas-SNP
PAPOLA	10914	hgsc.bcm.edu	hg19	14	96986492	96986492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PAPOLA	NM_001252006	exon2	c.G109A	p.V37I	GACTGCGTACTTA	.	34.0	10.0	60.0	0.0	.	58	.	.	Atlas-SNP
WDR20	91833	hgsc.bcm.edu	hg19	14	102676045	102676045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	WDR20	NM_001242417	exon4	c.T1631C	p.L544P	CGCCCCTGTGTCC	.	72.0	16.0	111.0	0.0	.	35	.	.	Atlas-SNP
CHAC1	79094	hgsc.bcm.edu	hg19	15	41247820	41247820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CHAC1	NM_024111	exon3	c.G643A	p.G215S	TTCTCCGGCCACA	.	32.0	16.0	26.0	0.0	.	25	.	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	hg19	15	50884667	50884667	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TRPM7	NM_017672	exon26	c.G3765A	p.S1255S	AGCTTCCGACGCT	.	102.0	22.0	96.0	0.0	.	145	.	.	Atlas-SNP
AP3B2	8120	hgsc.bcm.edu	hg19	15	83328618	83328618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	AP3B2	NM_004644	exon25	c.G3077A	p.C1026Y	GTCCCACAAGGAA	.	77.0	18.0	74.0	0.0	.	103	.	.	Atlas-SNP
UNC45A	55898	hgsc.bcm.edu	hg19	15	91478859	91478859	+	Missense_Mutation	SNP	A	A	C	rs34963697		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	UNC45A	NM_018671	exon2	c.A137C	p.Q46P	ACACTCAGGCCCT	.	69.0	12.0	76.0	0.0	.	57	.	A|0.982;C|0.018	Atlas-SNP
ST8SIA2	8128	hgsc.bcm.edu	hg19	15	92981799	92981799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ST8SIA2	NM_006011	exon4	c.C507A	p.S169R	GAACAGCGGCTGT	.	65.0	22.0	51.0	0.0	.	41	.	.	Atlas-SNP
LRRC28	123355	hgsc.bcm.edu	hg19	15	99828120	99828120	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	LRRC28	NM_144598	exon5	c.C349T	p.R117X	CATCTTCGATTAG	.	118.0	19.0	101.0	0.0	.	38	.	.	Atlas-SNP
IFT140	9742	hgsc.bcm.edu	hg19	16	1575967	1575967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	IFT140,NS,carcinoma,0,1	IFT140	NM_014714	exon21	c.C2689A	p.R897S	GCACGCGATCGTG	.	42.0	11.0	37.0	0.0	.	128	.	.	Atlas-SNP
ZC3H7A	29066	hgsc.bcm.edu	hg19	16	11846585	11846585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZC3H7A	NM_014153	exon22	c.A2666C	p.E889A	TCGTCCTCGGTGT	.	54.0	12.0	69.0	0.0	.	72	.	.	Atlas-SNP
MYH11	4629	hgsc.bcm.edu	hg19	16	15857692	15857692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MYH11	NM_001040114	exon11	c.G1111A	p.E371K	TTCTTTCCTTCTT	.	68.0	32.0	93.0	0.0	.	520	.	.	Atlas-SNP
ESRP2	80004	hgsc.bcm.edu	hg19	16	68266322	68266322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ESRP2	NM_024939	exon8	c.C906A	p.D302E	CGCTAGGTCCCGC	.	83.0	17.0	62.0	0.0	.	118	.	.	Atlas-SNP
FANCA	2175	hgsc.bcm.edu	hg19	16	89831471	89831471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	FANCA	NM_000135	exon28	c.C2605G	p.Q869E	GGAACTGAAACTG	.	41.0	4.0	45.0	0.0	.	99	.	.	Atlas-SNP
KRT26	353288	hgsc.bcm.edu	hg19	17	38922867	38922867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	KRT26	NM_181539	exon8	c.T1307C	p.I436T	TTGCCAATTTGAT	.	58.0	4.0	65.0	0.0	.	49	.	.	Atlas-SNP
SCRN2	90507	hgsc.bcm.edu	hg19	17	45916030	45916030	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SCRN2	NM_138355	exon6	c.C805G	p.L269V	CTCTGAGGATGCC	.	49.0	13.0	67.0	0.0	.	35	.	.	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	hg19	18	72775252	72775252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZNF407	NM_017757	exon8	c.C5575T	p.P1859S	GCGCCGCCCCCTG	.	49.0	12.0	89.0	0.0	.	231	.	.	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	hg19	18	74622651	74622651	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZNF236	NM_007345	exon16	c.C2683G	p.Q895E	CAGCCTCAGTTTC	.	52.0	4.0	72.0	0.0	.	325	.	.	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	hg19	19	2399148	2399148	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TMPRSS9	NM_182973	exon3	c.C369T	p.I123I	CGGCATCTCCCTG	.	54.0	5.0	72.0	0.0	.	79	.	.	Atlas-SNP
PLVAP	83483	hgsc.bcm.edu	hg19	19	17476642	17476642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PLVAP	NM_031310	exon3	c.G632A	p.R211H	AGCTGGCGCTCTT	.	54.0	11.0	45.0	0.0	.	64	.	.	Atlas-SNP
KIRREL2	84063	hgsc.bcm.edu	hg19	19	36352846	36352846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	KIRREL2	NM_199180	exon11	c.C1430A	p.S477Y	AGGAGTCTGACTT	.	126.0	16.0	91.0	0.0	.	170	.	.	Atlas-SNP
EML2	24139	hgsc.bcm.edu	hg19	19	46136177	46136177	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	EML2,NS,carcinoma,0,1	EML2	NM_001193268	exon9	c.A1055C	p.H352P	AGCACGTGTAAGG	.	137.0	19.0	81.0	0.0	.	64	.	.	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	hg19	19	55871106	55871106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	FAM71E2	NM_001145402	exon9	c.C1130A	p.S377Y	GGGATGGAAGAGT	.	162.0	23.0	92.0	0.0	.	41	.	.	Atlas-SNP
RFPL4A	342931	hgsc.bcm.edu	hg19	19	56274316	56274316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	RFPL4A	NM_001145014	exon3	c.G639T	p.L213F	CCAGTTGCACAGA	.	365.0	26.0	274.0	0.0	.	8	.	.	Atlas-SNP
SOGA1	140710	hgsc.bcm.edu	hg19	20	35431376	35431376	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SOGA1	NM_080627	exon11	c.G3222A	p.Q1074Q	CTGCAGCTGCCGA	.	67.0	15.0	46.0	0.0	.	136	.	.	Atlas-SNP
ARHGAP40	343578	hgsc.bcm.edu	hg19	20	37255663	37255663	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ARHGAP40	NM_001164431	exon3	c.G360A	p.L120L	GTGGCTGCAGGAC	.	72.0	17.0	58.0	0.0	.	50	.	.	Atlas-SNP
KCNK15	60598	hgsc.bcm.edu	hg19	20	43378872	43378872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	KCNK15	NM_022358	exon2	c.G386A	p.G129D	GCCTGGGCGAACG	.	41.0	7.0	47.0	0.0	.	19	.	.	Atlas-SNP
ZFP64	55734	hgsc.bcm.edu	hg19	20	50782459	50782459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	ZFP64_ENST00000361387,NS,carcinoma,0,3	ZFP64	NM_018197	exon3	c.G392A	p.R131H	TTGGTGCGTGACT	.	122.0	11.0	133.0	0.0	.	240	.	.	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	hg19	21	47666686	47666686	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MCM3AP	NM_003906	exon21	c.A4405T	p.M1469L	CTGCCATGTCCTC	.	111.0	31.0	137.0	0.0	.	146	.	.	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	hg19	22	21066826	21066826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	PI4KA	NM_058004	exon50	c.A5750G	p.Y1917C	TAGTCGTACATGC	.	302.0	72.0	300.0	0.0	.	313	.	.	Atlas-SNP
ZNF280A	129025	hgsc.bcm.edu	hg19	22	22869868	22869868	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZNF280A	NM_080740	exon2	c.T87C	p.D29D	ATCTGGATCTTCA	.	104.0	16.0	109.0	0.0	.	67	.	.	Atlas-SNP
CRYBA4	1413	hgsc.bcm.edu	hg19	22	27026303	27026303	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	CRYBA4	NM_001886	exon6	c.444-1G>A	.	TTTCCAGCTGGGT	.	55.0	8.0	56.0	0.0	.	33	.	.	Atlas-SNP
SBF1	6305	hgsc.bcm.edu	hg19	22	50905841	50905841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	SBF1	NM_002972	exon5	c.G475A	p.G159S	TCAGGCCCTCCAC	.	202.0	25.0	219.0	0.0	.	211	.	.	Atlas-SNP
WWC3	55841	hgsc.bcm.edu	hg19	X	10085608	10085608	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	WWC3	NM_015691	exon11	c.C1509T	p.A503A	ACACGCCTCGGCT	.	84.0	15.0	72.0	0.0	.	142	.	.	Atlas-SNP
TLR8	51311	hgsc.bcm.edu	hg19	X	12937742	12937742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	TLR8	NM_138636	exon2	c.G583A	p.G195R	GAAGATGGAGTAT	.	237.0	36.0	218.0	0.0	.	134	.	.	Atlas-SNP
GLOD5	392465	hgsc.bcm.edu	hg19	X	48631828	48631828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	GLOD5	NM_001080489	exon4	c.G460A	p.V154M	ATTGAGGTGTCCA	.	59.0	6.0	40.0	0.0	.	9	.	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123680738	123680738	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	.	NM_001163278	exon15	c.G2637A	p.V879V	AAATGACACCTCA	.	91.0	12.0	142.0	0.0	.	.	.	.	Atlas-SNP
MAGEA11	4110	hgsc.bcm.edu	hg19	X	148798396	148798396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	MAGEA11	NM_005366	exon5	c.T1250A	p.L417Q	CATCCCTGTATGA	.	147.0	22.0	123.0	0.0	.	86	.	.	Atlas-SNP
USP24	23358	hgsc.bcm.edu	hg19	1	55549487	55549488	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	USP24	NM_015306	exon57	c.6840_6841insT	p.N2280fs	.	.	314.0	163.0	372.0	0.0	.	323	.	.	Atlas-Indel,Pindel
CDH9	1007	hgsc.bcm.edu	hg19	5	26881302	26881302	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	CDH9,NS,carcinoma,0,2	CDH9	NM_016279	exon12	c.2314delC	p.P772fs	.	.	79.0	19.0	117.0	0.0	.	305	.	.	Atlas-Indel,Pindel
DUOX2	50506	hgsc.bcm.edu	hg19	15	45400255	45400257	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	DUOX2	NM_014080	exon13	c.1563_1565del	p.521_522del	.	.	66.0	22.0	54.0	0.0	.	137	.	.	Atlas-Indel,Pindel
ZHX1	11244	hgsc.bcm.edu	hg19	8	124266184	124266185	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	ZHX1	NM_001017926	exon3	c.2003_2004insA	p.T668fs	.	.	175.0	21.0	133.0	0.0	.	89	.	.	Atlas-Indel,Pindel
RPS23	6228	hgsc.bcm.edu	hg19	5	81573513	81573514	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A73G-01A-22D-A32G-10	TCGA-DD-A73G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	635235fc-77f3-49c0-96fa-9af89c5094c2	f14048d4-6611-479c-8cc0-9fe14f2b1618	.	RPS23	NM_001025	exon2	c.163_164insA	p.V55fs	.	.	103.0	19.0	99.0	0.0	.	11	.	.	Atlas-Indel,Pindel