Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CROCC 9696 hgsc.bcm.edu hg19 1 17248518 17248518 + Missense_Mutation SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CROCC NM_014675 exon1 c.G5A p.S2N CCATGAGCTTGGG . 224.0 45.0 215.0 0.0 . 185 . . Atlas-SNP PLA2G2F 64600 hgsc.bcm.edu hg19 1 20466020 20466020 + Missense_Mutation SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . PLA2G2F NM_022819 exon1 c.C100T p.P34S TCCTGTCCTTCAA . 70.0 36.0 65.0 0.0 . 28 . . Atlas-SNP NIPAL3 57185 hgsc.bcm.edu hg19 1 24768656 24768656 + Missense_Mutation SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . NIPAL3 NM_020448 exon4 c.G274T p.A92S GTGTTCGCCTCCT . 67.0 4.0 58.0 0.0 . 36 . . Atlas-SNP C1orf87 127795 hgsc.bcm.edu hg19 1 60520924 60520924 + Silent SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . C1orf87 NM_152377 exon3 c.C294T p.N98N TTTCTGGTTGTTT . 233.0 104.0 228.0 0.0 . 55 . . Atlas-SNP WDR63 126820 hgsc.bcm.edu hg19 1 85561679 85561679 + Silent SNP T T A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . WDR63 NM_145172 exon11 c.T1239A p.I413I TATCATTGCTGGA . 152.0 53.0 136.0 0.0 . 91 . . Atlas-SNP NBPF14 25832 hgsc.bcm.edu hg19 1 148004618 148004618 + Missense_Mutation SNP T T C rs143743039 TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . NBPF14 NM_015383 exon22 c.A2696G p.N899S AACCTATTGTCCA . 453.0 265.0 410.0 0.0 . 107 . T|1.000;C|0.000 Atlas-SNP THBS3 7059 hgsc.bcm.edu hg19 1 155172876 155172876 + Splice_Site SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . THBS3 NM_007112 exon8 c.808+1G>T . CACTCACCGCACA . 143.0 58.0 103.0 0.0 . 70 . . Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155448114 155448114 + Missense_Mutation SNP C C G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 ASH1L,colon,carcinoma,0,1 ASH1L NM_018489 exon3 c.G4547C p.R1516P CTATAGCGCTTCA . 137.0 50.0 115.0 0.0 . 279 . . Atlas-SNP FMO1 2326 hgsc.bcm.edu hg19 1 171251220 171251220 + Missense_Mutation SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . FMO1 NM_002021 exon7 c.G931T p.V311F AACTCTGTCATAT . 86.0 11.0 69.0 0.0 . 79 . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179604969 179604969 + Silent SNP G G C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 TDRD5,NS,carcinoma,0,1 TDRD5 NM_173533 exon9 c.G1467C p.R489R CATCCGGATCTAT . 89.0 36.0 97.0 0.0 . 149 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181693632 181693632 + Missense_Mutation SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CACNA1E NM_001205293 exon17 c.A2101G p.I701V TTGGCTATCGCTG . 113.0 50.0 78.0 0.0 . 778 . . Atlas-SNP CRB1 23418 hgsc.bcm.edu hg19 1 197407733 197407733 + Missense_Mutation SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CRB1 NM_201253 exon10 c.A3806G p.Y1269C CTTGCTACAATGG . 114.0 42.0 88.0 0.0 . 284 . . Atlas-SNP IARS2 55699 hgsc.bcm.edu hg19 1 220276901 220276901 + Missense_Mutation SNP T T A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . IARS2 NM_018060 exon8 c.T1063A p.S355T ACACTTTCAGGTG . 82.0 20.0 58.0 0.0 . 106 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228467595 228467595 + Silent SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . OBSCN NM_001271223 exon33 c.C8757T p.C2919C GTCCTGCGACTTC . 155.0 51.0 80.0 0.0 . 2142 . . Atlas-SNP AGT 183 hgsc.bcm.edu hg19 1 230846423 230846423 + Silent SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . AGT NM_000029 exon2 c.T174C p.N58N CCCGGCATTGGCC . 161.0 43.0 93.0 0.0 . 62 . . Atlas-SNP AHCTF1 25909 hgsc.bcm.edu hg19 1 247024551 247024551 + Missense_Mutation SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . AHCTF1 NM_015446 exon29 c.G3809T p.C1270F ACTGCACATTTTT . 426.0 120.0 246.0 0.0 . 187 . . Atlas-SNP TPO 7173 hgsc.bcm.edu hg19 2 1488375 1488375 + Missense_Mutation SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TPO NM_175719 exon9 c.C1346T p.T449I TCATCACCCTGAG . 239.0 83.0 149.0 0.0 . 224 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1915791 1915791 + Splice_Site SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . MYT1L NM_015025 exon13 c.1703+1G>T . GGCTTACCTTCGG . 95.0 26.0 40.0 0.0 . 241 . . Atlas-SNP DOK1 1796 hgsc.bcm.edu hg19 2 74783058 74783058 + Silent SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . DOK1 NM_001381 exon4 c.C492T p.A164A TGAGGCCGCCGAG . 112.0 36.0 60.0 0.0 . 39 . . Atlas-SNP LYG2 254773 hgsc.bcm.edu hg19 2 99861785 99861785 + Silent SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . LYG2 NM_175735 exon4 c.T321C p.H107H TCCGCCATGGCTT . 71.0 38.0 52.0 0.0 . 26 . . Atlas-SNP ZRANB3 84083 hgsc.bcm.edu hg19 2 135976732 135976732 + Missense_Mutation SNP C C T rs373108921 alternate_allele TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . ZRANB3 NM_032143 exon16 c.G2267A p.S756N TTACAGCTCATCT . 287.0 86.0 215.0 0.0 . 109 . . Atlas-SNP CACNB4 785 hgsc.bcm.edu hg19 2 152729009 152729009 + Splice_Site SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CACNB4 NM_000726 exon7 c.522-2A>G . ATTTCCTAGGATA . 91.0 41.0 71.0 0.0 . 108 . . Atlas-SNP SCN2A 6326 hgsc.bcm.edu hg19 2 166245504 166245504 + Missense_Mutation SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SCN2A NM_001040143 exon26 c.G5188T p.D1730Y CCTCCAGACTGTG . 318.0 56.0 225.0 0.0 . 589 . . Atlas-SNP SCN1A 6323 hgsc.bcm.edu hg19 2 166898866 166898866 + Silent SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SCN1A NM_001165963 exon12 c.A2112G p.L704L ATCTTCTAGAAAG . 150.0 63.0 108.0 0.0 . 641 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179590676 179590676 + Missense_Mutation SNP C C G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TTN NM_001267550 exon70 c.G20373C p.E6791D TACCACCTCAAAC . 234.0 128.0 169.0 0.0 . 18412 . . Atlas-SNP TNS1 7145 hgsc.bcm.edu hg19 2 218700829 218700829 + Missense_Mutation SNP G G T rs141836163 bycluster;byfrequency;alternate_allele TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TNS1 NM_022648 exon18 c.C2738A p.P913H CTACGAGGGGATG . 128.0 69.0 88.0 0.0 . 251 . G|0.999;A|0.001 Atlas-SNP RBMS3 27303 hgsc.bcm.edu hg19 3 29977613 29977613 + Missense_Mutation SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . RBMS3 NM_001177712 exon12 c.T1015C p.S339P CCCATGTCAATGC . 298.0 161.0 198.0 0.0 . 62 . . Atlas-SNP RBMS3 27303 hgsc.bcm.edu hg19 3 29977619 29977619 + Missense_Mutation SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . RBMS3 NM_001177712 exon12 c.C1021A p.Q341K TCAATGCAGCCAG . 294.0 161.0 204.0 0.0 . 62 . . Atlas-SNP OXSR1 9943 hgsc.bcm.edu hg19 3 38292941 38292941 + Missense_Mutation SNP G G T rs145431865 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . OXSR1 NM_005109 exon16 c.G1423T p.D475Y CTGGTCGACGGAA . 164.0 84.0 144.0 0.0 . 74 . G|0.999;A|0.001 Atlas-SNP SCN11A 11280 hgsc.bcm.edu hg19 3 38921513 38921513 + Silent SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SCN11A NM_014139 exon19 c.A3321G p.L1107L CCATTTTAGTACC . 107.0 38.0 93.0 0.0 . 296 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266098 41266098 + Missense_Mutation SNP A A T rs121913396 bycluster TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 CTNNB1,gallbladder,other,+1,128 CTNNB1 NM_001098209 exon3 c.A95T p.D32V ACCTGGACTCTGG . 222.0 84.0 175.0 1.0 . 4904 . . Atlas-SNP ITIH4 3700 hgsc.bcm.edu hg19 3 52860642 52860642 + Missense_Mutation SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . ITIH4 NM_001166449 exon5 c.A545G p.Q182R ATGCCCTGGGGCT . 53.0 32.0 48.0 0.0 . 74 . . Atlas-SNP TRIM59 286827 hgsc.bcm.edu hg19 3 160156300 160156300 + Missense_Mutation SNP T T A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TRIM59 NM_173084 exon3 c.A672T p.R224S CTTCATTCTTTCA . 209.0 64.0 119.0 0.0 . 42 . . Atlas-SNP AP2M1 1173 hgsc.bcm.edu hg19 3 183899820 183899820 + Silent SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . AP2M1 NM_001025205 exon8 c.G942T p.L314L ACTGCTGGCTCAG . 91.0 4.0 67.0 0.0 . 35 . . Atlas-SNP VWA5B2 90113 hgsc.bcm.edu hg19 3 183956399 183956399 + Missense_Mutation SNP C C G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . VWA5B2 NM_138345 exon13 c.C1940G p.S647C ACCCCTCTGACAC . 124.0 28.0 94.0 0.0 . 47 . . Atlas-SNP CCKAR 886 hgsc.bcm.edu hg19 4 26491839 26491839 + Silent SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CCKAR NM_000730 exon1 c.C51T p.P17P TTCACAGGGAGGA . 99.0 41.0 101.0 0.0 . 74 . . Atlas-SNP GABRB1 2560 hgsc.bcm.edu hg19 4 47427952 47427952 + Missense_Mutation SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . GABRB1 NM_000812 exon9 c.T1342C p.S448P GTGAATTCCATAG . 140.0 60.0 175.0 0.0 . 107 . . Atlas-SNP USP53 54532 hgsc.bcm.edu hg19 4 120182988 120182988 + Missense_Mutation SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . USP53 NM_019050 exon11 c.G941T p.W314L CCAAATGGGTATT . 112.0 56.0 91.0 0.0 . 69 . . Atlas-SNP C4orf51 646603 hgsc.bcm.edu hg19 4 146648100 146648100 + Silent SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . C4orf51 NM_001080531 exon3 c.A345G p.S115S AAAGTCATTTGAT . 510.0 139.0 260.0 0.0 . 18 . . Atlas-SNP FSTL5 56884 hgsc.bcm.edu hg19 4 162307497 162307497 + Missense_Mutation SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 FSTL5,NS,carcinoma,0,1 FSTL5 NM_020116 exon16 c.C1946T p.P649L GACTGAGGAACGC . 180.0 40.0 99.0 1.0 . 207 . . Atlas-SNP IRX4 50805 hgsc.bcm.edu hg19 5 1878852 1878852 + Missense_Mutation SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . IRX4 NM_016358 exon5 c.A791G p.D264G AGCGGGTCGAAGT . 193.0 80.0 170.0 0.0 . 45 . . Atlas-SNP CDH6 1004 hgsc.bcm.edu hg19 5 31323299 31323299 + Silent SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CDH6 NM_004932 exon12 c.C2257T p.L753L AGCTCGCTGGAGT . 165.0 73.0 146.0 0.0 . 175 . . Atlas-SNP PDZD2 23037 hgsc.bcm.edu hg19 5 32089802 32089802 + Missense_Mutation SNP G G T rs202221834 bycluster;by1000genomes;alternate_allele TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 PDZD2,colon,carcinoma,0,1 PDZD2 NM_178140 exon19 c.G6248T p.R2083L GCGATCGCCTCGA . 64.0 3.0 44.0 0.0 . 306 . G|1.000;A|0.000 Atlas-SNP TARS 6897 hgsc.bcm.edu hg19 5 33448802 33448802 + Nonsense_Mutation SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TARS NM_152295 exon3 c.G294A p.W98X ATCTTGGAAAACT . 136.0 62.0 112.0 0.0 . 66 . . Atlas-SNP HOMER1 9456 hgsc.bcm.edu hg19 5 78734957 78734957 + Silent SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . HOMER1 NM_004272 exon5 c.T403T p.W135W GAAGATCCCCGCC . 116.0 57.0 94.0 0.0 . 37 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127626533 127626533 + Missense_Mutation SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . FBN2 NM_001999 exon50 c.G6336T p.K2112N AGAACACTTTCCA . 152.0 59.0 145.0 0.0 . 858 . . Atlas-SNP PCDHA6 56142 hgsc.bcm.edu hg19 5 140208380 140208380 + Missense_Mutation SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . PCDHA6 NM_018909 exon1 c.T704C p.V235A TGGATGTGAATGA . 170.0 84.0 148.0 0.0 . 442 . . Atlas-SNP PCDHAC2 56134 hgsc.bcm.edu hg19 5 140347864 140347864 + Missense_Mutation SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . PCDHAC2 NM_031883 exon1 c.A1513G p.T505A GAGGTGACCTACT . 156.0 66.0 126.0 0.0 . 142 . . Atlas-SNP PCDHGA8 9708 hgsc.bcm.edu hg19 5 140773532 140773532 + Silent SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . PCDHGA8 NM_014004 exon1 c.T1152C p.C384C TGTCTGTTACACA . 125.0 55.0 117.0 0.0 . 146 . . Atlas-SNP HDAC3 8841 hgsc.bcm.edu hg19 5 141008783 141008783 + Silent SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 HDAC3,bladder,carcinoma,0,1 HDAC3 NM_003883 exon7 c.G567A p.T189T GGACACCGTCATG . 115.0 52.0 109.0 0.0 . 42 . . Atlas-SNP RANBP17 64901 hgsc.bcm.edu hg19 5 170598268 170598268 + Missense_Mutation SNP T T G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . RANBP17 NM_022897 exon16 c.T1843G p.F615V CTTCAGTTCCTAA . 163.0 71.0 153.0 0.0 . 108 . . Atlas-SNP CPEB4 80315 hgsc.bcm.edu hg19 5 173316743 173316743 + Missense_Mutation SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CPEB4 NM_030627 exon1 c.G7T p.D3Y ATGGGGGATTACG . 228.0 91.0 220.0 0.0 . 54 . . Atlas-SNP MAK 4117 hgsc.bcm.edu hg19 6 10784806 10784806 + Splice_Site SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . MAK NM_005906 exon12 c.1317-1G>T . GGAAGCCTTGAAA . 191.0 67.0 80.0 0.0 . 47 . . Atlas-SNP PPT2 9374 hgsc.bcm.edu hg19 6 32122457 32122457 + Missense_Mutation SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . PPT2 NM_138717 exon2 c.C104T p.P35L CAGCCCCCGCGCC . 127.0 39.0 63.0 0.0 . 19 . . Atlas-SNP KCTD20 222658 hgsc.bcm.edu hg19 6 36442832 36442832 + Missense_Mutation SNP C C G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . KCTD20 NM_173562 exon3 c.C427G p.L143V ACCATGCTGGGAA . 231.0 74.0 112.0 0.0 . 37 . . Atlas-SNP TREML2 79865 hgsc.bcm.edu hg19 6 41166095 41166095 + Missense_Mutation SNP T T C rs141238140 TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TREML2 NM_024807 exon2 c.A128G p.Y43C CCCTTATAGGAGC . 126.0 9.0 57.0 0.0 . 41 . . Atlas-SNP TREML2 79865 hgsc.bcm.edu hg19 6 41166123 41166123 + Missense_Mutation SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TREML2 NM_024807 exon2 c.G100A p.G34R TCTCCCCTTCAAG . 107.0 8.0 52.0 0.0 . 41 . . Atlas-SNP TDRD6 221400 hgsc.bcm.edu hg19 6 46660441 46660441 + Missense_Mutation SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TDRD6 NM_001168359 exon1 c.A4576G p.T1526A TATGCCACTGTGA . 284.0 88.0 126.0 0.0 . 205 . . Atlas-SNP SMOC2 64094 hgsc.bcm.edu hg19 6 168927046 168927046 + Missense_Mutation SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SMOC2 NM_022138 exon3 c.G277A p.E93K GTGGCCGAAAGGA . 71.0 55.0 108.0 0.0 . 57 . . Atlas-SNP FLNC 2318 hgsc.bcm.edu hg19 7 128486943 128486943 + Silent SNP G G C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . FLNC NM_001127487 exon24 c.G4272C p.G1424G CTTCGGGGGGCGG . 121.0 87.0 64.0 0.0 . 339 . . Atlas-SNP CNTNAP2 26047 hgsc.bcm.edu hg19 7 146536896 146536896 + Missense_Mutation SNP A A T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CNTNAP2 NM_014141 exon3 c.A302T p.Q101L CAACCCAAGGAAG . 176.0 106.0 123.0 0.0 . 392 . . Atlas-SNP PENK 5179 hgsc.bcm.edu hg19 8 57353832 57353832 + Silent SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . PENK NM_001135690 exon4 c.A803G p.X268X AGATATTAAAATC . 46.0 40.0 78.0 0.0 . 59 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113585851 113585851 + Silent SNP T T A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CSMD3 NM_198123 exon24 c.A3921T p.L1307L AGCACCTAGTAGA . 82.0 18.0 88.0 0.0 . 2325 . . Atlas-SNP SLC24A2 25769 hgsc.bcm.edu hg19 9 19786089 19786089 + Missense_Mutation SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SLC24A2 NM_001193288 exon1 c.A776G p.N259S ATGACATTATCCA . 137.0 32.0 102.0 0.0 . 93 . . Atlas-SNP MOB3B 79817 hgsc.bcm.edu hg19 9 27330605 27330605 + Missense_Mutation SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . . NM_024761 exon4 c.A631G p.T211A TGCTCGTCATTTC . 112.0 54.0 113.0 0.0 . . . . Atlas-SNP DBC1 1620 hgsc.bcm.edu hg19 9 122011265 122011265 + Missense_Mutation SNP G G C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . DBC1 NM_014618 exon3 c.C382G p.H128D GCAGGTGGGTGCC . 70.0 16.0 68.0 0.0 . 194 . . Atlas-SNP FCN1 2219 hgsc.bcm.edu hg19 9 137801655 137801655 + Missense_Mutation SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . FCN1 NM_002003 exon9 c.C970T p.R324W CGGGCCGCACCTT . 68.0 27.0 47.0 0.0 . 62 . . Atlas-SNP SPAG6 9576 hgsc.bcm.edu hg19 10 22676816 22676816 + Missense_Mutation SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SPAG6 NM_172242 exon6 c.T743C p.V248A TGGTTGTTGAAGC . 103.0 45.0 90.0 0.0 . 90 . . Atlas-SNP RASGEF1A 221002 hgsc.bcm.edu hg19 10 43694401 43694401 + Missense_Mutation SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . RASGEF1A NM_145313 exon9 c.G1012T p.A338S ACTTGGCTGTCTT . 69.0 25.0 58.0 0.0 . 66 . . Atlas-SNP SLC25A16 8034 hgsc.bcm.edu hg19 10 70243246 70243246 + Silent SNP A A T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SLC25A16 NM_152707 exon9 c.T942A p.S314S TGCTTGAGAGGGA . 42.0 9.0 45.0 0.0 . 16 . . Atlas-SNP TYSND1 219743 hgsc.bcm.edu hg19 10 71899886 71899886 + Missense_Mutation SNP T T A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TYSND1 NM_173555 exon4 c.A1495T p.S499C TGTTGCTGGTGAT . 168.0 76.0 141.0 0.0 . 20 . . Atlas-SNP CDH23 64072 hgsc.bcm.edu hg19 10 73453964 73453964 + Missense_Mutation SNP T T G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CDH23 NM_022124 exon20 c.T2237G p.V746G TCATCGTTCGCGC . 59.0 25.0 56.0 0.0 . 365 . . Atlas-SNP OR52N1 79473 hgsc.bcm.edu hg19 11 5809718 5809718 + Missense_Mutation SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . OR52N1 NM_001001913 exon1 c.C329T p.T110I ATCCCTGTGAAGG . 68.0 37.0 45.0 0.0 . 70 . . Atlas-SNP KCNA4 3739 hgsc.bcm.edu hg19 11 30032269 30032269 + Missense_Mutation SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . KCNA4 NM_002233 exon2 c.G1957T p.V653L TTCACACATCAGT . 120.0 50.0 94.0 0.0 . 158 . . Atlas-SNP LRP4 4038 hgsc.bcm.edu hg19 11 46912023 46912023 + Missense_Mutation SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . LRP4 NM_002334 exon14 c.G1720A p.G574S TGTTGCCCCAGTC . 62.0 33.0 67.0 0.0 . 160 . . Atlas-SNP OR10Q1 219960 hgsc.bcm.edu hg19 11 57995924 57995924 + Missense_Mutation SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 OR10Q1,colon,carcinoma,0,1 OR10Q1 NM_001004471 exon1 c.C424T p.R142C GCTCGCGGGTCAT . 46.0 23.0 61.0 0.0 . 79 . . Atlas-SNP CDC42BPG 55561 hgsc.bcm.edu hg19 11 64603631 64603631 + Silent SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CDC42BPG NM_017525 exon13 c.C1626T p.A542A GCTCAGGGCCCGG . 51.0 18.0 48.0 0.0 . 101 . . Atlas-SNP DHCR7 1717 hgsc.bcm.edu hg19 11 71146469 71146469 + Silent SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . DHCR7 NM_001163817 exon9 c.G1380A p.E460E GTAGCGCTCCCAG . 77.0 19.0 37.0 0.0 . 98 . . Atlas-SNP CNTN5 53942 hgsc.bcm.edu hg19 11 99690405 99690405 + Silent SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CNTN5 NM_001243270 exon3 c.G186T p.L62L AACACTGAGTGCT . 213.0 42.0 196.0 0.0 . 324 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103175403 103175403 + Missense_Mutation SNP T T G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . DYNC2H1 NM_001080463 exon78 c.T11357G p.L3786W TCTGTTTGAAGAA . 90.0 37.0 88.0 0.0 . 246 . . Atlas-SNP CCT2 10576 hgsc.bcm.edu hg19 12 69986800 69986800 + Silent SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CCT2 NM_006431 exon9 c.A795G p.A265A GGTTGCAGAAATA . 81.0 26.0 55.0 0.0 . 49 . . Atlas-SNP RASAL1 8437 hgsc.bcm.edu hg19 12 113553809 113553809 + Missense_Mutation SNP C C T rs150792397 bycluster TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . RASAL1 NM_004658 exon10 c.G779A p.R260H AGGACGCGGTCCT . 131.0 61.0 107.0 0.0 . 89 . C|1.000;T|0.000 Atlas-SNP OGFOD2 79676 hgsc.bcm.edu hg19 12 123461262 123461262 + Missense_Mutation SNP T T G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . OGFOD2 NM_024623 exon4 c.T71G p.L24R AAGCCCTCATCGC . 90.0 44.0 60.0 0.0 . 18 . . Atlas-SNP F10 2159 hgsc.bcm.edu hg19 13 113793724 113793724 + Missense_Mutation SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . F10 NM_000504 exon4 c.G310T p.G104C AAAGACGGCCTCG . 100.0 31.0 66.0 0.0 . 53 . . Atlas-SNP MNAT1 4331 hgsc.bcm.edu hg19 14 61275080 61275080 + Silent SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . MNAT1 NM_001177963 exon4 c.C354T p.T118T CAACACCAAAAAG . 475.0 231.0 442.0 1.0 . 24 . . Atlas-SNP APH1B 83464 hgsc.bcm.edu hg19 15 63571457 63571457 + Silent SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . APH1B NM_001145646 exon2 c.C211T p.L71L AAATATCTGCTGA . 156.0 14.0 126.0 0.0 . 27 . . Atlas-SNP SLCO3A1 28232 hgsc.bcm.edu hg19 15 92397220 92397220 + Missense_Mutation SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SLCO3A1 NM_013272 exon1 c.A82G p.K28E AACAAGAAAAAGA . 100.0 38.0 113.0 0.0 . 84 . . Atlas-SNP ZFHX3 463 hgsc.bcm.edu hg19 16 72828036 72828036 + Missense_Mutation SNP C C G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . ZFHX3 NM_006885 exon9 c.G8545C p.D2849H CCTCGTCTCCAGT . 88.0 44.0 72.0 0.0 . 404 . . Atlas-SNP LDHD 197257 hgsc.bcm.edu hg19 16 75147448 75147448 + Silent SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . LDHD NM_153486 exon8 c.G1140T p.T380T TGGCCGCGTGGCC . 61.0 31.0 53.0 0.0 . 34 . . Atlas-SNP MYH13 8735 hgsc.bcm.edu hg19 17 10223741 10223741 + Missense_Mutation SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . MYH13 NM_003802 exon25 c.G3184A p.D1062N TCAGATCTCCTTC . 81.0 69.0 90.0 0.0 . 533 . . Atlas-SNP MYH3 4621 hgsc.bcm.edu hg19 17 10549294 10549294 + Silent SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . MYH3 NM_002470 exon11 c.G954A p.E318E CAGGATCTCCCCC . 189.0 11.0 211.0 0.0 . 227 . . Atlas-SNP SARM1 23098 hgsc.bcm.edu hg19 17 26723269 26723269 + Silent SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SARM1 NM_015077 exon10 c.C2136T p.T712T TGACACCAGTTTG . 103.0 59.0 70.0 0.0 . 40 . . Atlas-SNP AP2B1 163 hgsc.bcm.edu hg19 17 33935332 33935332 + Missense_Mutation SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . AP2B1 NM_001282 exon5 c.A451G p.I151V CATGATATCAATG . 180.0 110.0 103.0 0.0 . 70 . . Atlas-SNP MRC2 9902 hgsc.bcm.edu hg19 17 60767109 60767109 + Silent SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . MRC2 NM_006039 exon24 c.G3561A p.L1187L TGGGCTGGCTGGC . 28.0 17.0 27.0 0.0 . 126 . . Atlas-SNP OTOP2 92736 hgsc.bcm.edu hg19 17 72921033 72921033 + Missense_Mutation SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . OTOP2 NM_178160 exon2 c.G306T p.W102C CATCTGGCTCCGA . 62.0 22.0 40.0 0.0 . 81 . . Atlas-SNP RNF213 57674 hgsc.bcm.edu hg19 17 78327327 78327327 + Missense_Mutation SNP G G T rs113011315 alternate_allele TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . RNF213 NM_001256071 exon34 c.G10439T p.R3480L AACACCGGGCGGA . 96.0 4.0 66.0 0.0 . 766 . G|0.500;A|0.500 Atlas-SNP ASXL3 80816 hgsc.bcm.edu hg19 18 31319755 31319755 + Missense_Mutation SNP A A T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . ASXL3 NM_030632 exon11 c.A2387T p.N796I GAGAGAACCTTAC . 58.0 17.0 65.0 0.0 . 405 . . Atlas-SNP FHOD3 80206 hgsc.bcm.edu hg19 18 34289345 34289345 + Missense_Mutation SNP A A T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . FHOD3 NM_025135 exon15 c.A1999T p.R667W AGGGACAGGACAA . 100.0 65.0 131.0 0.0 . 210 . . Atlas-SNP WDR7 23335 hgsc.bcm.edu hg19 18 54358525 54358525 + Missense_Mutation SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . WDR7 NM_052834 exon8 c.G796A p.V266I GACTTTGTCTCAT . 66.0 16.0 77.0 0.0 . 166 . . Atlas-SNP TRMT1 55621 hgsc.bcm.edu hg19 19 13220610 13220610 + Silent SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TRMT1 NM_001136035 exon10 c.G1149A p.E383E TTCACACTCGGGG . 61.0 20.0 41.0 0.0 . 31 . . Atlas-SNP EMR3 84658 hgsc.bcm.edu hg19 19 14740911 14740911 + Silent SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . EMR3 NM_032571 exon14 c.C1752A p.T584T GATGATGGTGAAG . 76.0 34.0 56.0 0.0 . 99 . . Atlas-SNP ILVBL 10994 hgsc.bcm.edu hg19 19 15233713 15233713 + Silent SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . ILVBL NM_006844 exon5 c.G594T p.S198S GGTGCCCGACTGG . 43.0 16.0 31.0 0.0 . 54 . . Atlas-SNP LSR 51599 hgsc.bcm.edu hg19 19 35740010 35740010 + Missense_Mutation SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . LSR NM_205834 exon1 c.C229T p.L77F GTGTGGCTTCTGC . 90.0 31.0 72.0 0.0 . 60 . . Atlas-SNP MLL4 8085 hgsc.bcm.edu hg19 19 36221665 36221665 + Nonsense_Mutation SNP C C A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . MLL4 NM_014727 exon26 c.C5334A p.C1778X TCGGTGCCGAATT . 85.0 32.0 66.0 0.0 . 229 . . Atlas-SNP KCNK6 9424 hgsc.bcm.edu hg19 19 38818018 38818018 + Missense_Mutation SNP C C T rs371433357 TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . KCNK6 NM_004823 exon3 c.C917T p.T306I CCCACACCGACTA . 40.0 21.0 41.0 0.0 . 37 . . Atlas-SNP ZNF320 162967 hgsc.bcm.edu hg19 19 53384284 53384284 + Silent SNP A A C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . ZNF320 NM_207333 exon4 c.T1095G p.A365A CCGGAAAGCCTTG . 97.0 41.0 60.0 0.0 . 67 . . Atlas-SNP JAG1 182 hgsc.bcm.edu hg19 20 10654131 10654131 + Silent SNP G G T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . JAG1 NM_000214 exon1 c.C48A p.L16L GAGCAGGAGGCTT . 73.0 26.0 48.0 0.0 . 213 . . Atlas-SNP HNF4A 3172 hgsc.bcm.edu hg19 20 43036067 43036067 + Missense_Mutation SNP C C T novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 Q8N8C9_HUMAN,NS,carcinoma,0,3 HNF4A NM_178849 exon3 c.C337T p.R113C CAGTGCCGCTACT . 76.0 31.0 75.0 0.0 . 150 . . Atlas-SNP ZNFX1 57169 hgsc.bcm.edu hg19 20 47865291 47865291 + Missense_Mutation SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . ZNFX1 NM_021035 exon14 c.T4270C p.Y1424H CACCATACAGGAG . 53.0 28.0 48.0 0.0 . 194 . . Atlas-SNP SALL4 57167 hgsc.bcm.edu hg19 20 50407317 50407317 + Missense_Mutation SNP G G A novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SALL4 NM_020436 exon2 c.C1705T p.L569F AAATGAGACATTC . 119.0 58.0 72.0 0.0 . 168 . . Atlas-SNP SLC5A1 6523 hgsc.bcm.edu hg19 22 32487698 32487698 + Missense_Mutation SNP A A G novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . SLC5A1 NM_000343 exon11 c.A1229G p.Y410C ACATCTACGCCAA . 91.0 42.0 68.0 0.0 . 80 . . Atlas-SNP TRIOBP 11078 hgsc.bcm.edu hg19 22 38119757 38119757 + Missense_Mutation SNP A A T rs199535040 TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . TRIOBP NM_001039141 exon7 c.A1194T p.Q398H CACTCAACGAGAG . 28.0 13.0 0.0 0.0 . 262 . . Atlas-SNP CSNK1E 1454 hgsc.bcm.edu hg19 22 38690173 38690173 + Missense_Mutation SNP T T C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . CSNK1E NM_001894 exon9 c.A1160G p.N387S GAGACGTTGGCGG . 51.0 25.0 43.0 0.0 . 143 . . Atlas-SNP GLRA2 2742 hgsc.bcm.edu hg19 X 14550361 14550361 + Missense_Mutation SNP G G C novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . GLRA2 NM_001118885 exon3 c.G69C p.R23S GTTTAGGACGGCT . 193.0 171.0 175.0 1.0 . 140 . . Atlas-SNP IBTK 25998 hgsc.bcm.edu hg19 6 82912269 82912269 + Frame_Shift_Del DEL T T - novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . IBTK NM_015525 exon18 c.2706delT p.N902fs . . 126.0 107.0 204.0 0.0 . 128 . . Atlas-Indel,Pindel PCDHB3 56132 hgsc.bcm.edu hg19 5 140481966 140481966 + Frame_Shift_Del DEL G G - novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . PCDHB3 NM_018937 exon1 c.1732delC p.R578fs . . 47.0 11.0 28.0 0.0 . 208 . . Atlas-INDEL C20orf111 51526 hgsc.bcm.edu hg19 20 42826241 42826248 + Frame_Shift_Del DEL GCTTTTGT GCTTTTGT - novel TCGA-DD-A73E-01A-12D-A32G-10 TCGA-DD-A73E-10A-01D-A32G-10 GCTTTTGT GCTTTTGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d7c7b2ed-0c9e-4c8e-a7f0-fb7d0f0b11ea 004c3f02-8bf1-4c76-9fb6-8a3c75687ce2 . C20orf111 NM_016470 exon4 c.324_331del p.108_111del . . 109.0 37.0 87.0 0.0 . 28 . . Atlas-Indel,Pindel