Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
FAAH	2166	hgsc.bcm.edu	hg19	1	46867761	46867761	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FAAH	NM_001441	exon2	c.196-2A>G	.	CCCCACAGAACCC	.	72.0	27.0	66.0	0.0	.	36	.	.	Atlas-SNP
LDLRAD1	388633	hgsc.bcm.edu	hg19	1	54477846	54477846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LDLRAD1	NM_001010978	exon4	c.C310T	p.H104Y	CGCCGTGGGTACA	.	22.0	13.0	27.0	0.0	.	22	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144868027	144868027	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PDE4DIP	NM_014644	exon33	c.C5412A	p.Y1804X	GCCCAGGTACCCA	.	223.0	79.0	159.0	0.0	.	817	.	.	Atlas-SNP
SEMA6C	10500	hgsc.bcm.edu	hg19	1	151105186	151105186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SEMA6C	NM_001178061	exon20	c.G2663A	p.G888D	CGGTGGCCGGAGA	.	108.0	27.0	52.0	0.0	.	70	.	.	Atlas-SNP
OR6Y1	391112	hgsc.bcm.edu	hg19	1	158517298	158517298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR6Y1	NM_001005189	exon1	c.G598T	p.A200S	TCTCAGCCTGTGA	.	130.0	67.0	61.0	0.0	.	73	.	.	Atlas-SNP
LHX9	56956	hgsc.bcm.edu	hg19	1	197896793	197896793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LHX9	NM_020204	exon4	c.G806A	p.R269H	CCAAGCGCATGCG	.	215.0	114.0	93.0	0.0	.	144	.	.	Atlas-SNP
MARK1	4139	hgsc.bcm.edu	hg19	1	220791830	220791830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MARK1	NM_018650	exon8	c.G731T	p.G244V	GTCTGGGCGTCAT	.	163.0	36.0	104.0	0.0	.	161	.	.	Atlas-SNP
TP53BP2	7159	hgsc.bcm.edu	hg19	1	224009040	224009040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TP53BP2	NM_001031685	exon2	c.T57G	p.N19K	CTGCTCATTGTTA	.	135.0	65.0	70.0	0.0	.	144	.	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225284905	225284905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	DNAH14	NM_001373	exon22	c.A3659G	p.Y1220C	GGCTTTATCTTGA	.	138.0	7.0	48.0	0.0	.	300	.	.	Atlas-SNP
FH	2271	hgsc.bcm.edu	hg19	1	241667442	241667442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FH	NM_000143	exon7	c.G1008A	p.M336I	TATCTTCATCAGA	.	213.0	109.0	98.0	0.0	.	64	.	.	Atlas-SNP
FH	2271	hgsc.bcm.edu	hg19	1	241667444	241667444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FH	NM_000143	exon7	c.A1006C	p.M336L	TCTTCATCAGACT	.	215.0	110.0	94.0	0.0	.	64	.	.	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	hg19	2	116503668	116503668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	DPP10	NM_001178034	exon10	c.C871G	p.Q291E	GCAGGTCAAGTGA	.	106.0	61.0	74.0	0.0	.	415	.	.	Atlas-SNP
SP3	6670	hgsc.bcm.edu	hg19	2	174820570	174820570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SP3	NM_003111	exon4	c.A670G	p.I224V	TCTGGATGTTAGC	.	103.0	68.0	62.0	0.0	.	82	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179560965	179560965	+	Silent	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TTN	NM_001267550	exon114	c.T30834C	p.A10278A	TTCTTCAGCTTTA	.	82.0	49.0	71.0	0.0	.	18412	.	.	Atlas-SNP
STRADB	55437	hgsc.bcm.edu	hg19	2	202344886	202344886	+	Silent	SNP	C	C	T	rs146098224		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	STRADB	NM_018571	exon12	c.C1245T	p.Y415Y	CTCATACTGGGAA	.	131.0	7.0	50.0	0.0	.	33	.	.	Atlas-SNP
PSMD1	5707	hgsc.bcm.edu	hg19	2	231931711	231931711	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PSMD1	NM_002807	exon5	c.C396T	p.G132G	GGAAGGCATCGTA	.	112.0	14.0	85.0	0.0	.	77	.	.	Atlas-SNP
GALNT15	117248	hgsc.bcm.edu	hg19	3	16217085	16217085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	NM_054110	exon1	c.G427A	p.V143M	GGGGAGGTGTCTG	.	31.0	18.0	41.0	0.0	.	.	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	CTNNB1,gallbladder,other,+1,128	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	145.0	82.0	106.0	0.0	.	4904	.	.	Atlas-SNP
MAPKAPK3	7867	hgsc.bcm.edu	hg19	3	50677796	50677796	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	MAPKAPK3	NM_001243926	exon5	c.220-1G>A	.	CCTACAGCTCCTG	.	79.0	36.0	78.0	0.0	.	32	.	.	Atlas-SNP
OR5H6	79295	hgsc.bcm.edu	hg19	3	97983496	97983496	+	Missense_Mutation	SNP	C	C	T	rs145155372	bycluster	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR5H6	NM_001005479	exon1	c.C368T	p.T123I	TAACCACTGTAAC	.	79.0	7.0	53.0	0.0	.	89	.	.	Atlas-SNP
VEPH1	79674	hgsc.bcm.edu	hg19	3	157098983	157098983	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	VEPH1	NM_001167911	exon7	c.T1089G	p.L363L	TCGGGTAAGGAGT	.	104.0	43.0	85.0	0.0	.	129	.	.	Atlas-SNP
CPEB2	132864	hgsc.bcm.edu	hg19	4	15067830	15067830	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	CPEB2_ENST00000538197,caecum,carcinoma,0,2	CPEB2	NM_001177382	exon12	c.C2931T	p.G977G	CCAGGGCGCACGC	.	119.0	42.0	113.0	0.0	.	77	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55604594	55604594	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KIT	NM_000222	exon21	c.2803-1G>T	.	TCTCCAGATTTAC	.	69.0	31.0	87.0	0.0	.	7396	.	.	Atlas-SNP
SOX30	11063	hgsc.bcm.edu	hg19	5	157065387	157065387	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SOX30	NM_178424	exon4	c.T1731A	p.S577R	TGGAGCACTTCTG	.	87.0	38.0	60.0	0.0	.	67	.	.	Atlas-SNP
RNF39	80352	hgsc.bcm.edu	hg19	6	30043421	30043421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	RNF39	NM_025236	exon1	c.C146T	p.A49V	GAGCGCGCAGATG	.	151.0	8.0	69.0	0.0	.	27	.	.	Atlas-SNP
IER3	8870	hgsc.bcm.edu	hg19	6	30712289	30712289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	IER3	NM_003897	exon1	c.C7T	p.H3Y	GAGAGTGACACAT	.	135.0	105.0	71.0	0.0	.	5	.	.	Atlas-SNP
TREML2	79865	hgsc.bcm.edu	hg19	6	41166095	41166095	+	Missense_Mutation	SNP	T	T	C	rs141238140		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TREML2	NM_024807	exon2	c.A128G	p.Y43C	CCCTTATAGGAGC	.	76.0	5.0	42.0	0.0	.	41	.	.	Atlas-SNP
TREML2	79865	hgsc.bcm.edu	hg19	6	41166123	41166123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TREML2	NM_024807	exon2	c.G100A	p.G34R	TCTCCCCTTCAAG	.	67.0	6.0	38.0	0.0	.	41	.	.	Atlas-SNP
CNR1	1268	hgsc.bcm.edu	hg19	6	88854115	88854115	+	Silent	SNP	C	C	T	rs35057475		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CNR1	NM_001160258	exon4	c.G879A	p.A293A	CATGTACGCATAC	.	47.0	20.0	45.0	0.0	.	91	.	C|0.987;T|0.013	Atlas-SNP
ZC2HC1A	51101	hgsc.bcm.edu	hg19	8	79598709	79598709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	.	NM_016010	exon4	c.C218A	p.P73Q	CAGAACCACCAAA	.	276.0	81.0	154.0	0.0	.	.	.	.	Atlas-SNP
KIAA0196	9897	hgsc.bcm.edu	hg19	8	126044596	126044596	+	Silent	SNP	T	T	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KIAA0196	NM_014846	exon27	c.A3222T	p.P1074P	AAGTGGTGGCCAA	.	89.0	30.0	82.0	0.0	.	90	.	.	Atlas-SNP
KCNK9	51305	hgsc.bcm.edu	hg19	8	140631270	140631270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KCNK9	NM_016601	exon2	c.C356A	p.P119Q	GTCAGCGGGATGC	.	90.0	30.0	59.0	0.0	.	100	.	.	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131339464	131339464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SPTAN1	NM_003127	exon7	c.A842G	p.D281G	CCTCTGATGATTT	.	67.0	33.0	64.0	0.0	.	266	.	.	Atlas-SNP
COMMD3	23412	hgsc.bcm.edu	hg19	10	22607754	22607754	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	COMMD3	NM_012071	exon6	c.T431G	p.M144R	ATAGGATGTACAG	.	315.0	60.0	157.0	0.0	.	13	.	.	Atlas-SNP
FAM24A	118670	hgsc.bcm.edu	hg19	10	124672364	124672364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FAM24A	NM_001029888	exon3	c.C212G	p.T71S	AAGCCACCACCAT	.	96.0	44.0	76.0	0.0	.	16	.	.	Atlas-SNP
CHRM4	1132	hgsc.bcm.edu	hg19	11	46407538	46407538	+	Silent	SNP	C	C	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CHRM4	NM_000741	exon1	c.G570C	p.L190L	GTTGGACAGGAAC	.	80.0	38.0	67.0	0.0	.	47	.	.	Atlas-SNP
OR9G4	283189	hgsc.bcm.edu	hg19	11	56510613	56510613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR9G4	NM_001005284	exon1	c.C675A	p.S225R	AAGAATGCTGGAG	.	50.0	25.0	54.0	0.0	.	73	.	.	Atlas-SNP
EML3	256364	hgsc.bcm.edu	hg19	11	62373664	62373664	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	EML3	NM_153265	exon13	c.G1527A	p.Q509Q	GTGAGCCTGGGCC	.	66.0	23.0	66.0	0.0	.	61	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93402866	93402866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	KIAA1731	NM_033395	exon5	c.C458T	p.A153V	AGGAAGCACTGCT	.	70.0	29.0	62.0	0.0	.	173	.	.	Atlas-SNP
IL10RA	3587	hgsc.bcm.edu	hg19	11	117864027	117864027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	IL10RA	NM_001558	exon4	c.A439T	p.R147W	CTACCCAGGCCCA	.	65.0	26.0	48.0	0.0	.	46	.	.	Atlas-SNP
TRIM29	23650	hgsc.bcm.edu	hg19	11	120008342	120008342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TRIM29	NM_012101	exon1	c.C398T	p.S133L	GACTCCGAGAAAA	.	29.0	10.0	43.0	0.0	.	78	.	.	Atlas-SNP
OR8A1	390275	hgsc.bcm.edu	hg19	11	124440804	124440804	+	Silent	SNP	A	A	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	OR8A1	NM_001005194	exon1	c.A840C	p.T280T	CTCCACAATCAGT	.	86.0	39.0	74.0	0.0	.	61	.	.	Atlas-SNP
LRRC43	254050	hgsc.bcm.edu	hg19	12	122687883	122687883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LRRC43	NM_001098519	exon12	c.C1865T	p.P622L	TGATTCCGATCTA	.	22.0	9.0	26.0	0.0	.	105	.	.	Atlas-SNP
F10	2159	hgsc.bcm.edu	hg19	13	113803570	113803570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	F10	NM_000504	exon8	c.G1206A	p.M402I	GAACATGTTCTGT	.	69.0	34.0	71.0	0.0	.	53	.	.	Atlas-SNP
IRF9	10379	hgsc.bcm.edu	hg19	14	24631525	24631525	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	IRF9	NM_006084	exon2	c.T172G	p.F58V	GCTGCCTTCTTCA	.	52.0	17.0	65.0	0.0	.	33	.	.	Atlas-SNP
IRF9	10379	hgsc.bcm.edu	hg19	14	24631526	24631526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	IRF9	NM_006084	exon2	c.T173C	p.F58S	CTGCCTTCTTCAA	.	52.0	17.0	64.0	0.0	.	33	.	.	Atlas-SNP
TEX9	374618	hgsc.bcm.edu	hg19	15	56683606	56683606	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	TEX9	NM_198524	exon7	c.C561T	p.D187D	TAATGACATTGGA	.	144.0	69.0	138.0	0.0	.	29	.	.	Atlas-SNP
COX5A	9377	hgsc.bcm.edu	hg19	15	75221554	75221554	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	COX5A	NM_004255	exon2	c.C120G	p.C40W	GGAATAGCAGCGA	.	82.0	37.0	70.0	0.0	.	9	.	.	Atlas-SNP
GNPTG	84572	hgsc.bcm.edu	hg19	16	1412312	1412312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	GNPTG	NM_032520	exon7	c.G517A	p.A173T	CCCCACGCCTTGC	.	31.0	12.0	36.0	0.0	.	18	.	.	Atlas-SNP
ITGAL	3683	hgsc.bcm.edu	hg19	16	30507788	30507788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ITGAL	NM_002209	exon15	c.T1733C	p.I578T	CAGGAATTCAGTG	.	104.0	49.0	105.0	0.0	.	149	.	.	Atlas-SNP
ERN1	2081	hgsc.bcm.edu	hg19	17	62133223	62133223	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ERN1	NM_001433	exon13	c.A1484T	p.Q495L	GGCAGCTGCTGCT	.	77.0	5.0	27.0	0.0	.	102	.	.	Atlas-SNP
C3	718	hgsc.bcm.edu	hg19	19	6697550	6697550	+	Silent	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	C3	NM_000064	exon21	c.C2601T	p.L867L	ATTGTGGAGTAGT	.	50.0	24.0	50.0	0.0	.	192	.	.	Atlas-SNP
ANGPTL6	83854	hgsc.bcm.edu	hg19	19	10204121	10204121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ANGPTL6	NM_031917	exon5	c.C1126T	p.R376W	CAAGCCGCAGGCG	.	95.0	39.0	66.0	0.0	.	28	.	.	Atlas-SNP
CALR	811	hgsc.bcm.edu	hg19	19	13054718	13054718	+	Missense_Mutation	SNP	C	C	G	rs148604761	bycluster;by1000genomes;alternate_allele	TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CALR	NM_004343	exon9	c.C1245G	p.D415E	CAAGGACGAGCTG	.	97.0	44.0	95.0	0.0	.	31	.	C|1.000;T|0.000	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40408468	40408468	+	Silent	SNP	C	C	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FCGBP	NM_003890	exon8	c.G4371A	p.K1457K	CTCCTCCTTCTGA	.	213.0	67.0	242.0	0.0	.	416	.	.	Atlas-SNP
PRX	57716	hgsc.bcm.edu	hg19	19	40903727	40903727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	PRX	NM_181882	exon7	c.C532A	p.P178T	GGACAGGACCCTT	.	21.0	12.0	29.0	0.0	.	151	.	.	Atlas-SNP
LMTK3	114783	hgsc.bcm.edu	hg19	19	49002759	49002759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	LMTK3	NM_001080434	exon12	c.G1654T	p.V552L	GCAGCACGCTGGG	.	49.0	23.0	51.0	0.0	.	125	.	.	Atlas-SNP
SIGLEC8	27181	hgsc.bcm.edu	hg19	19	51960896	51960896	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	SIGLEC8	NM_014442	exon2	c.G552T	p.G184G	GGGTGTCCCCTGC	.	40.0	17.0	34.0	0.0	.	130	.	.	Atlas-SNP
SLC12A5	57468	hgsc.bcm.edu	hg19	20	44664102	44664102	+	Silent	SNP	C	C	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	SLC12A5,colon,carcinoma,0,1	SLC12A5	NM_001134771	exon3	c.C276A	p.T92T	CTACACCAACCTG	.	76.0	30.0	91.0	0.0	.	181	.	.	Atlas-SNP
RLIM	51132	hgsc.bcm.edu	hg19	X	73812012	73812012	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	RLIM	NM_183353	exon5	c.A1138T	p.S380C	TGGTACTGACATA	.	108.0	57.0	94.0	0.0	.	90	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46215247	46215247	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ARID2	NM_152641	exon6	c.681delG	p.E227fs	.	.	415.0	184.0	385.0	0.0	.	311	.	.	Atlas-Indel,Pindel
CD97	976	hgsc.bcm.edu	hg19	19	14516639	14516639	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CD97	NM_078481	exon14	c.1708delC	p.L570fs	.	.	43.0	21.0	44.0	0.0	.	86	.	.	Atlas-Indel,Pindel
ZNF227	7770	hgsc.bcm.edu	hg19	19	44739094	44739097	+	Frame_Shift_Del	DEL	TTTT	TTTT	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	TTTT	TTTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	ZNF227	NM_182490	exon6	c.510_513del	p.170_171del	.	.	127.0	47.0	128.0	0.0	.	62	.	.	Atlas-Indel,Pindel
CAND1	55832	hgsc.bcm.edu	hg19	12	67701255	67701255	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	CAND1	NM_018448	exon11	c.3007delC	p.L1003fs	.	.	86.0	46.0	93.0	0.0	.	100	.	.	Atlas-Indel,Pindel
FRMD6	122786	hgsc.bcm.edu	hg19	14	52186983	52187007	+	Frame_Shift_Del	DEL	ACTCCAGCAGTGCCATCCACCGCAA	ACTCCAGCAGTGCCATCCACCGCAA	-	novel		TCGA-DD-A73D-01A-12D-A32G-10	TCGA-DD-A73D-10A-01D-A32G-10	ACTCCAGCAGTGCCATCCACCGCAA	ACTCCAGCAGTGCCATCCACCGCAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e6ace15b-9da3-4260-86f4-4e0cfb35e204	4d8c018d-9b4f-4288-ac78-501085f38978	.	FRMD6	NM_001267046	exon11	c.1234_1258del	p.412_420del	.	.	56.0	11.0	67.0	0.0	.	100	.	.	Atlas-Indel,Pindel