Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CELA3B 23436 hgsc.bcm.edu hg19 1 22310306 22310306 + Missense_Mutation SNP G G T rs201377315 alternate_allele TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . CELA3B NM_007352 exon5 c.G482T p.G161V TCACCGGCTGGGG . 427.0 140.0 426.0 0.0 . 24 . . Atlas-SNP ZMYM4 9202 hgsc.bcm.edu hg19 1 35852656 35852656 + Missense_Mutation SNP A A G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . ZMYM4 NM_005095 exon12 c.A1889G p.Q630R TGTCTCAGGGCCA . 59.0 21.0 78.0 0.0 . 143 . . Atlas-SNP GPR61 83873 hgsc.bcm.edu hg19 1 110086824 110086824 + Missense_Mutation SNP T T C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . GPR61 NM_031936 exon2 c.T1180C p.S394P TCTGAGTCCTGGG . 92.0 26.0 66.0 0.0 . 60 . . Atlas-SNP LAMC2 3918 hgsc.bcm.edu hg19 1 183184629 183184629 + Missense_Mutation SNP T T A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . LAMC2 NM_005562 exon3 c.T310A p.C104S TGCAGCTGTAAAC . 62.0 34.0 97.0 0.0 . 113 . . Atlas-SNP FAM129A 116496 hgsc.bcm.edu hg19 1 184787922 184787922 + Missense_Mutation SNP C C A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . FAM129A NM_052966 exon9 c.G1023T p.E341D CACACTCTCCAAG . 69.0 35.0 104.0 0.0 . 98 . . Atlas-SNP NEK2 4751 hgsc.bcm.edu hg19 1 211840446 211840446 + Silent SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . NEK2 NM_001204183 exon7 c.T1113A p.G371G TCTCATACCTGGA . 241.0 67.0 214.0 0.0 . 49 . . Atlas-SNP OR2L8 391190 hgsc.bcm.edu hg19 1 248112914 248112914 + Missense_Mutation SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 OR2L8,right_upper_lobe,carcinoma,0,1 OR2L8 NM_001001963 exon1 c.C755T p.A252V ACTATGCACCTTT . 170.0 46.0 204.0 0.0 . 92 . . Atlas-SNP CPSF3 51692 hgsc.bcm.edu hg19 2 9574031 9574031 + Missense_Mutation SNP A A G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . CPSF3 NM_016207 exon6 c.A551G p.E184G GACAAGAAGATAG . 357.0 107.0 343.0 0.0 . 63 . . Atlas-SNP MGAT5 4249 hgsc.bcm.edu hg19 2 135206375 135206375 + Missense_Mutation SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . MGAT5 NM_002410 exon16 c.A2183T p.D728V GCCGGGACTTCAT . 126.0 33.0 130.0 0.0 . 84 . . Atlas-SNP COL3A1 1281 hgsc.bcm.edu hg19 2 189856233 189856233 + Silent SNP C C T rs138569287 TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 COL3A1,NS,carcinoma,0,1 COL3A1 NM_000090 exon12 c.C873T p.G291G TCCAGGCGAAAAT . 256.0 74.0 270.0 0.0 . 292 . C|1.000;T|0.000 Atlas-SNP SGOL2 151246 hgsc.bcm.edu hg19 2 201399894 201399894 + Missense_Mutation SNP G G C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . SGOL2 NM_001160046 exon3 c.G309C p.L103F TAACTTGGTATGT . 335.0 71.0 364.0 0.0 . 126 . . Atlas-SNP PLCD4 84812 hgsc.bcm.edu hg19 2 219499332 219499332 + Missense_Mutation SNP A A C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PLCD4 NM_032726 exon13 c.A1875C p.K625N TTTCAAAGCCCAG . 146.0 50.0 152.0 0.0 . 51 . . Atlas-SNP HDLBP 3069 hgsc.bcm.edu hg19 2 242194526 242194526 + Missense_Mutation SNP G G C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . HDLBP NM_005336 exon9 c.C1128G p.H376Q GAAACGGTGAAGC . 73.0 21.0 75.0 0.0 . 118 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41274910 41274910 + Missense_Mutation SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . CTNNB1 NM_001098209 exon8 c.A1160T p.N387I TCAGGAATCTTTC . 152.0 45.0 126.0 0.0 . 4904 . . Atlas-SNP CCDC13 152206 hgsc.bcm.edu hg19 3 42781149 42781149 + Missense_Mutation SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . CCDC13 NM_144719 exon9 c.G1141A p.D381N GCTCGTCATCATG . 105.0 40.0 117.0 0.0 . 71 . . Atlas-SNP RRP9 9136 hgsc.bcm.edu hg19 3 51969471 51969471 + Silent SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . RRP9 NM_004704 exon10 c.G858A p.V286V TGCAGCCACAGCG . 83.0 32.0 78.0 0.0 . 40 . . Atlas-SNP PDHB 5162 hgsc.bcm.edu hg19 3 58419520 58419520 + Missense_Mutation SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PDHB NM_000925 exon1 c.G17A p.G6D ACCAAGCCAGACA . 140.0 29.0 104.0 0.0 . 19 . . Atlas-SNP PPP2R3A 5523 hgsc.bcm.edu hg19 3 135825091 135825091 + Missense_Mutation SNP T T A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PPP2R3A NM_002718 exon13 c.T3256A p.W1086R TCAGACTGGGACC . 107.0 25.0 82.0 0.0 . 114 . . Atlas-SNP SLIT2 9353 hgsc.bcm.edu hg19 4 20525746 20525746 + Missense_Mutation SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 SLIT2,NS,lymphoid_neoplasm,0,1 SLIT2 NM_004787 exon14 c.C1384T p.R462C CCCCGCCGCCTGG . 92.0 31.0 118.0 0.0 . 290 . . Atlas-SNP SCD5 79966 hgsc.bcm.edu hg19 4 83626515 83626515 + Missense_Mutation SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . SCD5 NM_024906 exon2 c.G284A p.R95H CACAAGCGATGGG . 168.0 47.0 203.0 0.0 . 58 . . Atlas-SNP MMRN1 22915 hgsc.bcm.edu hg19 4 90856220 90856220 + Silent SNP T T C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . MMRN1 NM_007351 exon6 c.T1389C p.I463I TCACATTGTGAAT . 269.0 97.0 264.0 0.0 . 174 . . Atlas-SNP PCDH10 57575 hgsc.bcm.edu hg19 4 134072769 134072769 + Missense_Mutation SNP G G C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PCDH10 NM_032961 exon1 c.G1474C p.E492Q CGGGATGAGGGCG . 71.0 4.0 63.0 0.0 . 290 . . Atlas-SNP POU4F2 5458 hgsc.bcm.edu hg19 4 147561765 147561765 + Silent SNP G G A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . POU4F2 NM_004575 exon2 c.G1035A p.K345K GGAGAAGAAGCGC . 74.0 27.0 80.0 0.0 . 83 . . Atlas-SNP ADAM29 11086 hgsc.bcm.edu hg19 4 175897952 175897952 + Silent SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . ADAM29 NM_001130703 exon4 c.C1276T p.L426L TGCTGTCTGTCAA . 101.0 38.0 120.0 0.0 . 262 . . Atlas-SNP IRX1 79192 hgsc.bcm.edu hg19 5 3600047 3600047 + Missense_Mutation SNP G G A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . IRX1 NM_024337 exon2 c.G985A p.A329T GACGGTGCGCCCA . 74.0 28.0 54.0 0.0 . 106 . . Atlas-SNP NIPBL 25836 hgsc.bcm.edu hg19 5 37008169 37008169 + Silent SNP T T C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . NIPBL NM_015384 exon19 c.T4299C p.C1433C GTTGTGTGCCATT . 241.0 77.0 248.0 0.0 . 513 . . Atlas-SNP MAP1B 4131 hgsc.bcm.edu hg19 5 71493190 71493190 + Silent SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . MAP1B NM_005909 exon5 c.C4008T p.Y1336Y ACCTTACTATCAA . 109.0 36.0 107.0 0.0 . 243 . . Atlas-SNP CMYA5 202333 hgsc.bcm.edu hg19 5 79026634 79026634 + Silent SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . CMYA5 NM_153610 exon2 c.C2046T p.D682D AGGAGACGAGGCC . 148.0 6.0 106.0 0.0 . 643 . . Atlas-SNP ACOT12 134526 hgsc.bcm.edu hg19 5 80626218 80626218 + Missense_Mutation SNP A A C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . ACOT12 NM_130767 exon15 c.T1663G p.F555V TTTAAAATGTGCT . 139.0 76.0 109.0 0.0 . 57 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89924641 89924641 + Missense_Mutation SNP C C A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . GPR98 NM_032119 exon8 c.C1501A p.P501T AGCGAGCCAGCGG . 145.0 42.0 88.0 0.0 . 605 . . Atlas-SNP PAM 5066 hgsc.bcm.edu hg19 5 102360991 102360991 + Missense_Mutation SNP T T A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PAM NM_001177306 exon23 c.T2642A p.L881Q TCCTGCTGGCCAT . 235.0 63.0 193.0 0.0 . 180 . . Atlas-SNP PCDHB10 56126 hgsc.bcm.edu hg19 5 140574371 140574371 + Missense_Mutation SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PCDHB10 NM_018930 exon1 c.A2246T p.Q749L TGTCCCAGAGCTA . 126.0 25.0 104.0 0.0 . 177 . . Atlas-SNP PCDHGA12 26025 hgsc.bcm.edu hg19 5 140811741 140811741 + Missense_Mutation SNP T T A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PCDHGA12 NM_032094 exon1 c.T1415A p.V472D CCCTCGTCTCTGT . 230.0 106.0 178.0 0.0 . 271 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150886868 150886868 + Missense_Mutation SNP C C A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 .,1 FAT2 NM_001447 exon22 c.G12364T p.A4122S CAGAGGCCTTGCT . 185.0 32.0 151.0 0.0 . 465 . . Atlas-SNP LARP1 23367 hgsc.bcm.edu hg19 5 154173763 154173763 + Missense_Mutation SNP C C G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . LARP1 NM_015315 exon7 c.C942G p.S314R TGTCAGCAGCACC . 390.0 102.0 297.0 0.0 . 187 . . Atlas-SNP WDR46 9277 hgsc.bcm.edu hg19 6 33254618 33254618 + Missense_Mutation SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . WDR46 NM_005452 exon10 c.T1069A p.C357S GATGACAGAGAAT . 114.0 41.0 121.0 0.0 . 43 . . Atlas-SNP KIAA1009 22832 hgsc.bcm.edu hg19 6 84910598 84910598 + Silent SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . KIAA1009 NM_014895 exon9 c.T744A p.S248S TGCAACAGAGTCT . 113.0 41.0 106.0 0.0 . 119 . . Atlas-SNP SEC63 11231 hgsc.bcm.edu hg19 6 108214765 108214765 + Nonsense_Mutation SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 SEC63,NS,carcinoma,0,2 SEC63 NM_007214 exon16 c.T1595A p.L532X TTTTTTAAAGGTT . 82.0 4.0 82.0 1.0 . 79 . . Atlas-SNP SGK1 6446 hgsc.bcm.edu hg19 6 134494621 134494621 + Silent SNP G G A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . SGK1 NM_001143676 exon6 c.C597T p.I199I CTTTCCGATCACT . 157.0 36.0 158.0 0.0 . 387 . . Atlas-SNP KATNA1 11104 hgsc.bcm.edu hg19 6 149916182 149916182 + Missense_Mutation SNP C C G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . KATNA1 NM_007044 exon11 c.G1466C p.G489A CATGATCCAAACT . 66.0 17.0 110.0 0.0 . 34 . . Atlas-SNP PARK2 5071 hgsc.bcm.edu hg19 6 162206857 162206857 + Missense_Mutation SNP T T C rs373750972 TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PARK2 NM_004562 exon7 c.A818G p.N273S CGATCATTGAGTC . 156.0 46.0 156.0 0.0 . 96 . . Atlas-SNP EGFR 1956 hgsc.bcm.edu hg19 7 55225380 55225380 + Missense_Mutation SNP C C G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . EGFR NM_005228 exon11 c.C1232G p.P411R CTTGGCCTGAAAA . 120.0 43.0 147.0 0.0 . 20426 . . Atlas-SNP XPO7 23039 hgsc.bcm.edu hg19 8 21842213 21842213 + Missense_Mutation SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . XPO7 NM_015024 exon12 c.A1334T p.Q445L TGGACCAGCTGTC . 75.0 39.0 107.0 0.0 . 79 . . Atlas-SNP ASPH 444 hgsc.bcm.edu hg19 8 62593583 62593583 + Missense_Mutation SNP A A G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . ASPH NM_001164756 exon4 c.T311C p.I104T TCATAGATTCCTA . 316.0 94.0 324.0 0.0 . 87 . . Atlas-SNP LY96 23643 hgsc.bcm.edu hg19 8 74917085 74917085 + Missense_Mutation SNP G G T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . LY96 NM_015364 exon2 c.G167T p.R56I TGAAAAGATCCAA . 389.0 124.0 355.0 1.0 . 17 . . Atlas-SNP OSR2 116039 hgsc.bcm.edu hg19 8 99961205 99961205 + Missense_Mutation SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . OSR2 NM_053001 exon2 c.C25T p.P9S CCAGCGCCCATCC . 102.0 21.0 72.0 0.0 . 56 . . Atlas-SNP KLF10 7071 hgsc.bcm.edu hg19 8 103663550 103663550 + Missense_Mutation SNP T T C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . KLF10 NM_005655 exon3 c.A1010G p.N337S GTGCCATTCGGGC . 233.0 38.0 157.0 0.0 . 44 . . Atlas-SNP TRPS1 7227 hgsc.bcm.edu hg19 8 116632123 116632123 + Missense_Mutation SNP T T G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . TRPS1 NM_014112 exon3 c.A202C p.N68H TATGATTTAGTTC . 212.0 130.0 117.0 0.0 . 516 . . Atlas-SNP CYP11B2 1585 hgsc.bcm.edu hg19 8 143996179 143996179 + Missense_Mutation SNP C C A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . CYP11B2 NM_000498 exon4 c.G741T p.W247C GCTGATCCAGCGA . 457.0 103.0 341.0 0.0 . 107 . . Atlas-SNP DOCK8 81704 hgsc.bcm.edu hg19 9 396809 396809 + Missense_Mutation SNP C C G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . DOCK8 NM_203447 exon25 c.C2995G p.H999D CACGTACATAACA . 100.0 40.0 111.0 0.0 . 401 . . Atlas-SNP NACC2 138151 hgsc.bcm.edu hg19 9 138903604 138903604 + Missense_Mutation SNP C C A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . NACC2 NM_144653 exon6 c.G1522T p.A508S TCAGAGCCACGAT . 36.0 13.0 31.0 0.0 . 16 . . Atlas-SNP OR13A1 79290 hgsc.bcm.edu hg19 10 45799015 45799015 + Missense_Mutation SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . OR13A1 NM_001004297 exon4 c.G856A p.A286T TCCCTGCGCTGTA . 90.0 8.0 87.0 0.0 . 49 . . Atlas-SNP DDX50 79009 hgsc.bcm.edu hg19 10 70661161 70661161 + Missense_Mutation SNP G G T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . DDX50 NM_024045 exon1 c.G21T p.W7C CCTCTGGGGGGAC . 196.0 73.0 204.0 0.0 . 65 . . Atlas-SNP JAKMIP3 282973 hgsc.bcm.edu hg19 10 133946888 133946888 + Missense_Mutation SNP G G T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . JAKMIP3 NM_001105521 exon3 c.G706T p.A236S GGGCATGCTCAGA . 73.0 19.0 90.0 0.0 . 69 . . Atlas-SNP ST5 6764 hgsc.bcm.edu hg19 11 8732433 8732433 + Missense_Mutation SNP C C G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . ST5 NM_005418 exon14 c.G2311C p.E771Q CATCTTCCCCAGT . 53.0 14.0 59.0 0.0 . 85 . . Atlas-SNP PATL1 219988 hgsc.bcm.edu hg19 11 59416963 59416963 + Missense_Mutation SNP A A C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PATL1 NM_152716 exon14 c.T1705G p.L569V CCCTTAAGTTGTC . 203.0 67.0 222.0 0.0 . 92 . . Atlas-SNP ASUN 55726 hgsc.bcm.edu hg19 12 27066960 27066960 + Missense_Mutation SNP T T G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . . NM_018164 exon13 c.A1521C p.K507N ATCATTTTTTCTT . 274.0 74.0 265.0 0.0 . . . . Atlas-SNP ANO6 196527 hgsc.bcm.edu hg19 12 45803160 45803160 + Missense_Mutation SNP G G A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . ANO6 NM_001204803 exon17 c.G1964A p.G655E TAATTGGGCGATT . 77.0 23.0 83.0 0.0 . 163 . . Atlas-SNP MAP3K12 7786 hgsc.bcm.edu hg19 12 53875041 53875041 + Silent SNP T T A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . MAP3K12 NM_001193511 exon14 c.A2604T p.S868S ACAGTCTGAGTCC . 117.0 54.0 91.0 0.0 . 160 . . Atlas-SNP R3HDM2 22864 hgsc.bcm.edu hg19 12 57660557 57660557 + Silent SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . R3HDM2 NM_014925 exon17 c.T2046A p.S682S AGAGGGAGACTGA . 52.0 15.0 53.0 0.0 . 125 . . Atlas-SNP CNOT2 4848 hgsc.bcm.edu hg19 12 70732260 70732260 + Missense_Mutation SNP A A G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . CNOT2 NM_001199302 exon11 c.A938G p.D313G GTACAGATGGACC . 194.0 57.0 161.0 0.0 . 53 . . Atlas-SNP NOS1 4842 hgsc.bcm.edu hg19 12 117698357 117698357 + Silent SNP C C G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . NOS1 NM_000620 exon14 c.G2280C p.A760A GATGGTCGCTTTC . 99.0 31.0 110.0 0.0 . 240 . . Atlas-SNP CENPJ 55835 hgsc.bcm.edu hg19 13 25467000 25467000 + Silent SNP T T C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . CENPJ NM_018451 exon10 c.A2997G p.L999L CTGTTTTAAAGTC . 161.0 54.0 144.0 0.0 . 116 . . Atlas-SNP MTMR6 9107 hgsc.bcm.edu hg19 13 25826056 25826056 + Silent SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . MTMR6 NM_004685 exon12 c.T1413A p.P471P GTAGAGAGGATTT . 104.0 33.0 83.0 0.0 . 75 . . Atlas-SNP PCK2 5106 hgsc.bcm.edu hg19 14 24567763 24567763 + Silent SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PCK2 NM_001018073 exon4 c.C540T p.D180D CACTGACTCAGCC . 99.0 29.0 82.0 0.0 . 66 . . Atlas-SNP SLC25A29 123096 hgsc.bcm.edu hg19 14 100758804 100758804 + Missense_Mutation SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . SLC25A29 NM_001039355 exon4 c.G728A p.G243D CGCCAGCCCTCGG . 30.0 9.0 13.0 0.0 . 14 . . Atlas-SNP PAK6 56924 hgsc.bcm.edu hg19 15 40564637 40564637 + Silent SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PAK6 NM_001128629 exon5 c.C1071T p.A357A GCACGCCCAGATC . 62.0 4.0 59.0 0.0 . 49 . . Atlas-SNP SLCO3A1 28232 hgsc.bcm.edu hg19 15 92459624 92459624 + Silent SNP G G T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . SLCO3A1 NM_013272 exon2 c.G582T p.V194V CCCTGTGCAGCCC . 72.0 26.0 65.0 0.0 . 84 . . Atlas-SNP IGF1R 3480 hgsc.bcm.edu hg19 15 99459327 99459327 + Missense_Mutation SNP G G A rs143193096 bycluster TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . IGF1R NM_000875 exon9 c.G1963A p.G655S CAGGACGGCTACC . 170.0 53.0 183.0 0.0 . 147 . G|1.000;A|0.000 Atlas-SNP TNRC6A 27327 hgsc.bcm.edu hg19 16 24816121 24816121 + Silent SNP C C A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . TNRC6A NM_014494 exon13 c.C3933A p.A1311A CCAGGCCCTTGGC . 189.0 55.0 160.0 0.0 . 171 . . Atlas-SNP CDH11 1009 hgsc.bcm.edu hg19 16 64984770 64984770 + Silent SNP G G A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 CDH11_ENST00000394156,NS,carcinoma,0,3 CDH11 NM_001797 exon12 c.C1794T p.N598N TGCCCCGTTCACG . 62.0 22.0 74.0 0.0 . 260 . . Atlas-SNP WWP2 11060 hgsc.bcm.edu hg19 16 69973254 69973254 + Silent SNP A A G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . WWP2 NM_001270454 exon23 c.A2451G p.G817G CAACGGACCACAG . 81.0 28.0 97.0 0.0 . 88 . . Atlas-SNP VAT1L 57687 hgsc.bcm.edu hg19 16 77859321 77859321 + Missense_Mutation SNP G G A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . VAT1L NM_020927 exon3 c.G542A p.G181E GGGAAGGGATGTC . 108.0 34.0 146.0 0.0 . 68 . . Atlas-SNP KLHDC4 54758 hgsc.bcm.edu hg19 16 87788816 87788816 + Missense_Mutation SNP C C A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . KLHDC4 NM_001184856 exon4 c.G353T p.R118M CAGCGCCTCGGAG . 161.0 55.0 181.0 0.0 . 45 . . Atlas-SNP PELP1 27043 hgsc.bcm.edu hg19 17 4575508 4575508 + Silent SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . PELP1 NM_014389 exon16 c.G2778A p.E926E TTCCTCCTCTTCT . 68.0 4.0 90.0 0.0 . 102 . . Atlas-SNP ZNF18 7566 hgsc.bcm.edu hg19 17 11881942 11881942 + Missense_Mutation SNP A A C novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 ZNF18,caecum,carcinoma,0,1 ZNF18 NM_144680 exon9 c.T982G p.F328V TGAAGAAGCCCCT . 79.0 22.0 73.0 0.0 . 42 . . Atlas-SNP MYO15A 51168 hgsc.bcm.edu hg19 17 18025025 18025025 + Missense_Mutation SNP G G T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . MYO15A NM_016239 exon2 c.G2911T p.V971L GGCCCTGTGCCAT . 143.0 54.0 147.0 0.0 . 268 . . Atlas-SNP SLFN11 91607 hgsc.bcm.edu hg19 17 33679758 33679758 + Nonsense_Mutation SNP C C A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . SLFN11 NM_152270 exon5 c.G2323T p.G775X AGGTTCCCTGAAC . 108.0 26.0 121.0 0.0 . 112 . . Atlas-SNP CCL3 6348 hgsc.bcm.edu hg19 17 34416065 34416065 + Missense_Mutation SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . CCL3 NM_002983 exon3 c.G232A p.E78K ACTCCTCACTGGG . 449.0 124.0 488.0 0.0 . 8 . . Atlas-SNP GNGT2 2793 hgsc.bcm.edu hg19 17 47284155 47284155 + Silent SNP A A G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . GNGT2 NM_031498 exon4 c.T174C p.N58N GAAGGGATTCTTG . 166.0 59.0 167.0 0.0 . 12 . . Atlas-SNP COG1 9382 hgsc.bcm.edu hg19 17 71199899 71199899 + Silent SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . COG1 NM_018714 exon9 c.C2349T p.A783A AGCTGCCTATGAG . 173.0 59.0 157.0 0.0 . 46 . . Atlas-SNP C17orf99 100141515 hgsc.bcm.edu hg19 17 76160409 76160409 + Missense_Mutation SNP A A G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . . NM_001163075 exon4 c.A604G p.N202D AACGCCAATGTCC . 187.0 61.0 215.0 0.0 . . . . Atlas-SNP MEX3C 51320 hgsc.bcm.edu hg19 18 48702858 48702858 + Missense_Mutation SNP C C G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . MEX3C NM_016626 exon2 c.G1843C p.E615Q TAACCTCATTCTC . 185.0 70.0 162.0 0.0 . 77 . . Atlas-SNP OR10H1 26539 hgsc.bcm.edu hg19 19 15918464 15918464 + Missense_Mutation SNP G G T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . OR10H1 NM_013940 exon1 c.C384A p.H128Q CAGGGGGTGGCAG . 170.0 63.0 133.0 0.0 . 59 . . Atlas-SNP MAP1S 55201 hgsc.bcm.edu hg19 19 17835870 17835870 + Missense_Mutation SNP C C G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . MAP1S NM_018174 exon4 c.C316G p.L106V AACCTTCTGTTGG . 160.0 55.0 176.0 0.0 . 74 . . Atlas-SNP ANKRD27 84079 hgsc.bcm.edu hg19 19 33110252 33110252 + Missense_Mutation SNP A A G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . ANKRD27 NM_032139 exon20 c.T1921C p.S641P TGATGGAGTCCAC . 59.0 16.0 55.0 0.0 . 86 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38380424 38380424 + Missense_Mutation SNP G G T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . WDR87 NM_031951 exon6 c.C3770A p.S1257Y GTTTGGGAACCAG . 117.0 43.0 105.0 0.0 . 191 . . Atlas-SNP OPA3 80207 hgsc.bcm.edu hg19 19 46032587 46032587 + Missense_Mutation SNP G G T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . OPA3 NM_001017989 exon2 c.C270A p.F90L GGTGATGAAGATG . 74.0 18.0 113.0 0.0 . 19 . . Atlas-SNP ZNF552 79818 hgsc.bcm.edu hg19 19 58319697 58319697 + Missense_Mutation SNP A A G novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . ZNF552 NM_024762 exon3 c.T935C p.I312T TGTGCAATGAGGT . 94.0 31.0 91.0 0.0 . 32 . . Atlas-SNP SYCP2 10388 hgsc.bcm.edu hg19 20 58449053 58449053 + Missense_Mutation SNP G G A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . SYCP2 NM_014258 exon34 c.C3413T p.S1138L TAAGGTGATATAG . 127.0 36.0 161.0 0.0 . 204 . . Atlas-SNP RBBP8NL 140893 hgsc.bcm.edu hg19 20 60989559 60989559 + Missense_Mutation SNP G G A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . . NM_080833 exon10 c.C848T p.S283F TTCGGGGAGAGCT . 77.0 22.0 75.0 0.0 . . . . Atlas-SNP TPTE 7179 hgsc.bcm.edu hg19 21 10906954 10906954 + Missense_Mutation SNP A A T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . TPTE NM_199261 exon24 c.T1607A p.L536H CCAAAAAGTATCT . 350.0 44.0 344.0 0.0 . 513 . . Atlas-SNP BAGE3 85318 hgsc.bcm.edu hg19 21 11049587 11049587 + Missense_Mutation SNP G G A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . . NM_182481 exon4 c.C314T p.A105V TCCCGGGCTGTCG . 564.0 31.0 473.0 0.0 . . . . Atlas-SNP NLGN4X 57502 hgsc.bcm.edu hg19 X 5810976 5810976 + Missense_Mutation SNP G G A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . NLGN4X NM_181332 exon6 c.C2333T p.T778I GTGATGGTGTTTG . 140.0 73.0 179.0 0.0 . 191 . . Atlas-SNP MSL3 10943 hgsc.bcm.edu hg19 X 11783626 11783626 + Missense_Mutation SNP C C A novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . MSL3 NM_078628 exon9 c.C949A p.P317T TTGAATCCATCCA . 77.0 58.0 87.0 0.0 . 88 . . Atlas-SNP FANCB 2187 hgsc.bcm.edu hg19 X 14876077 14876077 + Splice_Site SNP C C T novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . FANCB NM_001018113 exon6 c.1105-1G>A . TTCACTCTAATAA . 127.0 93.0 156.0 0.0 . 78 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123097024 123097040 + Frame_Shift_Del DEL ATTTTTCGGTGGTGGAA ATTTTTCGGTGGTGGAA - novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 ATTTTTCGGTGGTGGAA ATTTTTCGGTGGTGGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 KIAA1109,colon,carcinoma,0,1 KIAA1109 NM_015312 exon4 c.312_328del p.104_110del . . 250.0 26.0 360.0 0.0 . 424 . . Atlas-Indel,Pindel TRAIP 10293 hgsc.bcm.edu hg19 3 49866583 49866584 + Frame_Shift_Del DEL CT CT - novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . TRAIP NM_005879 exon15 c.1363_1364del p.455_455del . . 204.0 79.0 196.0 0.0 . 47 . . Atlas-Indel,Pindel ZFHX3 463 hgsc.bcm.edu hg19 16 72991696 72991697 + In_Frame_Ins INS - - GCCGCC novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . ZFHX3 NM_006885 exon2 c.2349_2350insGGCGGC p.A783delinsAAA . . 60.0 15.0 36.0 0.0 . 404 . . Atlas-INDEL FGA 2243 hgsc.bcm.edu hg19 4 155507454 155507455 + In_Frame_Ins INS - - CAG novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . FGA NM_000508 exon5 c.1127_1128insCTG p.E376delinsAE . . 88.0 22.0 98.0 0.0 . 179 . . Atlas-Indel,Pindel VWF 7450 hgsc.bcm.edu hg19 12 6145595 6145601 + Frame_Shift_Del DEL CTCCTTG CTCCTTG - novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 CTCCTTG CTCCTTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . VWF NM_000552 exon19 c.2500_2506del p.834_836del . . 78.0 19.0 83.0 0.0 . 338 . . Atlas-Indel,Pindel THADA 63892 hgsc.bcm.edu hg19 2 43801892 43801893 + Frame_Shift_Ins INS - - AA novel TCGA-DD-A73A-01A-12D-A32G-10 TCGA-DD-A73A-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f9800ae3-b791-4398-8e47-b95090ce40c4 f9cccec6-b538-4d9d-a04a-c06ed1337e87 . THADA NM_001083953 exon11 c.1312_1313insTT p.V438fs . . 96.0 32.0 104.0 0.0 . 131 . . Atlas-Indel,Pindel