Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm DRAXIN 374946 hgsc.bcm.edu hg19 1 11771928 11771928 + Missense_Mutation SNP C C A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . . NM_198545 exon4 c.C663A p.D221E GTCTGACGGGGAG . 126.0 19.0 109.0 0.0 . . . . Atlas-SNP FHAD1 114827 hgsc.bcm.edu hg19 1 15639652 15639652 + Missense_Mutation SNP A A G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . FHAD1 NM_052929 exon8 c.A1139G p.K380R AGGACAAGGACCA . 396.0 56.0 344.0 0.0 . 78 . . Atlas-SNP GDAP2 54834 hgsc.bcm.edu hg19 1 118455267 118455267 + Missense_Mutation SNP T T A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . GDAP2 NM_017686 exon4 c.A355T p.N119Y CTAGATTGAATCC . 129.0 63.0 97.0 0.0 . 37 . . Atlas-SNP GDAP2 54834 hgsc.bcm.edu hg19 1 118455268 118455268 + Missense_Mutation SNP G G T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . GDAP2 NM_017686 exon4 c.C354A p.F118L TAGATTGAATCCT . 130.0 63.0 95.0 0.0 . 37 . . Atlas-SNP OR6N2 81442 hgsc.bcm.edu hg19 1 158747387 158747387 + Silent SNP C C A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . OR6N2 NM_001005278 exon1 c.G39T p.V13V AAGGAACACAAAT . 468.0 134.0 292.0 0.0 . 78 . . Atlas-SNP ATP2B4 493 hgsc.bcm.edu hg19 1 203702358 203702358 + Missense_Mutation SNP T T C novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . ATP2B4 NM_001001396 exon21 c.T3317C p.V1106A TCGACGTAATTAA . 140.0 23.0 70.0 0.0 . 226 . . Atlas-SNP RCOR3 55758 hgsc.bcm.edu hg19 1 211486854 211486854 + Missense_Mutation SNP T T A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . RCOR3 NM_001136223 exon12 c.T1406A p.L469Q CCACTCTGAACCA . 203.0 68.0 97.0 0.0 . 51 . . Atlas-SNP ZBTB18 10472 hgsc.bcm.edu hg19 1 244218375 244218375 + Silent SNP C C A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . . NM_205768 exon2 c.C1299A p.T433T GTACACCCTCAAG . 528.0 246.0 205.0 0.0 . . . . Atlas-SNP CLHC1 130162 hgsc.bcm.edu hg19 2 55402927 55402927 + Missense_Mutation SNP T T C novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . . NM_152385 exon13 c.A1760G p.X587W TAGAACTACCAAA . 136.0 58.0 105.0 0.0 . . . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73681090 73681090 + Missense_Mutation SNP T T A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . ALMS1 NM_015120 exon8 c.T7433A p.L2478Q ATTCACTGGCTGC . 195.0 10.0 125.0 0.0 . 384 . . Atlas-SNP NFE2L2 4780 hgsc.bcm.edu hg19 2 178098809 178098809 + Missense_Mutation SNP T T A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a NFE2L2,bladder,carcinoma,-1,3 NFE2L2 NM_006164 exon2 c.A236T p.E79V CCTGTCTCTTCAT . 64.0 26.0 47.0 0.0 . 225 . . Atlas-SNP NFE2L2 4780 hgsc.bcm.edu hg19 2 178098810 178098810 + Nonsense_Mutation SNP C C A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a NFE2L2,bladder,carcinoma,0,21 NFE2L2 NM_006164 exon2 c.G235T p.E79X CTGTCTCTTCATC . 64.0 27.0 48.0 0.0 . 225 . . Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220342149 220342149 + Nonsense_Mutation SNP G G T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . SPEG NM_005876 exon20 c.G4711T p.E1571X AAAGCAGAGTTGG . 120.0 50.0 105.0 0.0 . 272 . . Atlas-SNP DOCK10 55619 hgsc.bcm.edu hg19 2 225653873 225653873 + Nonsense_Mutation SNP C C A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . DOCK10 NM_014689 exon48 c.G5326T p.G1776X GCCATCCCATAGA . 110.0 54.0 86.0 0.0 . 308 . . Atlas-SNP LRIG1 26018 hgsc.bcm.edu hg19 3 66465346 66465346 + Silent SNP T T C novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . LRIG1 NM_015541 exon5 c.A645G p.Q215Q TCACAGTTGTGTC . 114.0 32.0 73.0 0.0 . 138 . . Atlas-SNP ZNF654 55279 hgsc.bcm.edu hg19 3 88189316 88189316 + Missense_Mutation SNP G G A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . ZNF654 NM_018293 exon1 c.G856A p.A286T CAGCTTGCCCAGC . 70.0 19.0 74.0 0.0 . 56 . . Atlas-SNP DZIP3 9666 hgsc.bcm.edu hg19 3 108373044 108373044 + Missense_Mutation SNP C C T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . DZIP3 NM_014648 exon19 c.C2086T p.H696Y AATCCACACTCAG . 149.0 43.0 143.0 0.0 . 111 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3123007 3123007 + Missense_Mutation SNP C C A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . HTT NM_002111 exon9 c.C1121A p.T374N TTGTGACCGGAGC . 115.0 45.0 85.0 0.0 . 221 . . Atlas-SNP ZNF827 152485 hgsc.bcm.edu hg19 4 146695657 146695657 + Splice_Site SNP C C G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . ZNF827 NM_178835 exon12 c.2860+1G>C . TGGTCACCTGTGT . 148.0 42.0 132.0 0.0 . 102 . . Atlas-SNP CDH9 1007 hgsc.bcm.edu hg19 5 26881251 26881251 + Silent SNP T T G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . CDH9 NM_016279 exon12 c.A2364C p.R788R TTAGTCTCGGTCA . 152.0 56.0 89.0 0.0 . 305 . . Atlas-SNP GZMA 3001 hgsc.bcm.edu hg19 5 54401400 54401400 + Missense_Mutation SNP G G A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . GZMA NM_006144 exon2 c.G169A p.A57T GCTGGGGCTTTGA . 45.0 21.0 51.0 0.0 . 60 . . Atlas-SNP NR3C1 2908 hgsc.bcm.edu hg19 5 142779486 142779486 + Missense_Mutation SNP G G C novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . NR3C1 NM_001018074 exon2 c.C919G p.P307A CTCCAGGAAAGCT . 87.0 4.0 72.0 0.0 . 124 . . Atlas-SNP PHIP 55023 hgsc.bcm.edu hg19 6 79752610 79752610 + Missense_Mutation SNP A A T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . PHIP NM_017934 exon7 c.T550A p.S184T CAGATGACAAGTG . 75.0 4.0 70.0 0.0 . 177 . . Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157522055 157522055 + Missense_Mutation SNP A A G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . ARID1B NM_020732 exon18 c.A4327G p.I1443V CACGGAATCCCGC . 216.0 90.0 179.0 0.0 . 320 . . Atlas-SNP LPA 4018 hgsc.bcm.edu hg19 6 161016508 161016508 + Missense_Mutation SNP G G T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . LPA NM_005577 exon22 c.C3347A p.T1116N TCCATGGTGTAAC . 143.0 29.0 84.0 0.0 . 237 . . Atlas-SNP THSD7A 221981 hgsc.bcm.edu hg19 7 11446000 11446000 + Silent SNP A A G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . THSD7A NM_015204 exon21 c.T4164C p.C1388C GTCAGCACAGAAT . 155.0 56.0 71.0 0.0 . 219 . . Atlas-SNP FKBP9 11328 hgsc.bcm.edu hg19 7 33014908 33014908 + Missense_Mutation SNP G G A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a FKBP9,brain,glioma,0,9 FKBP9 NM_007270 exon3 c.G482A p.R161Q GCCCTCGGACCAT . 140.0 6.0 93.0 2.0 . 335 . . Atlas-SNP GSR 2936 hgsc.bcm.edu hg19 8 30538494 30538494 + Missense_Mutation SNP G G T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . GSR NM_000637 exon12 c.C1346A p.P449Q TACATCGGGGTAA . 82.0 4.0 81.0 0.0 . 53 . . Atlas-SNP OPLAH 26873 hgsc.bcm.edu hg19 8 145106719 145106719 + Missense_Mutation SNP G G C novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . OPLAH NM_017570 exon27 c.C3631G p.P1211A CGCCAGGCTCGCC . 47.0 15.0 29.0 0.0 . 78 . . Atlas-SNP SVEP1 79987 hgsc.bcm.edu hg19 9 113173981 113173981 + Missense_Mutation SNP G G T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . SVEP1 NM_153366 exon37 c.C6010A p.L2004M CGGCCAGGCATTC . 100.0 4.0 89.0 0.0 . 326 . . Atlas-SNP WDFY4 57705 hgsc.bcm.edu hg19 10 50022050 50022050 + Missense_Mutation SNP G G A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . WDFY4 NM_020945 exon31 c.G5263A p.E1755K CACCAGGAAGAAG . 63.0 13.0 29.0 0.0 . 205 . . Atlas-SNP ABTB2 25841 hgsc.bcm.edu hg19 11 34189528 34189528 + Silent SNP T T G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . ABTB2 NM_145804 exon6 c.A1575C p.P525P CATCAGTGGCGTC . 121.0 18.0 84.0 0.0 . 101 . . Atlas-SNP LRP4 4038 hgsc.bcm.edu hg19 11 46921839 46921839 + Missense_Mutation SNP T T A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . LRP4 NM_002334 exon3 c.A290T p.E97V TCATCCTCACAGT . 190.0 74.0 120.0 0.0 . 160 . . Atlas-SNP MYRF 745 hgsc.bcm.edu hg19 11 61547742 61547742 + Missense_Mutation SNP G G C novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . . NM_001127392 exon18 c.G2385C p.E795D AGAGGAGGACCTG . 387.0 71.0 241.0 0.0 . . . . Atlas-SNP KRT79 338785 hgsc.bcm.edu hg19 12 53216820 53216820 + Silent SNP A A G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . KRT79 NM_175834 exon7 c.T1347C p.L449L CTCCAGAAGCTTG . 65.0 18.0 60.0 0.0 . 78 . . Atlas-SNP CRY1 1407 hgsc.bcm.edu hg19 12 107393336 107393336 + Missense_Mutation SNP C C G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . CRY1 NM_004075 exon7 c.G1130C p.G377A TTCATTCCTTCTT . 80.0 29.0 93.0 0.0 . 74 . . Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112601506 112601506 + Missense_Mutation SNP C C T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . . NM_001109662 exon74 c.G12335A p.R4112Q AGGCTCCGGATGG . 64.0 22.0 70.0 0.0 . . . . Atlas-SNP EBPL 84650 hgsc.bcm.edu hg19 13 50235138 50235138 + Missense_Mutation SNP T T G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a EBPL,NS,carcinoma,0,2 EBPL NM_032565 exon4 c.A587C p.Q196P TCTTTCTGATGCA . 82.0 4.0 96.0 1.0 . 44 . . Atlas-SNP CLN5 1203 hgsc.bcm.edu hg19 13 77566254 77566254 + Silent SNP G G C novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . CLN5 NM_006493 exon1 c.G168C p.T56T AGACACGGCACAG . 32.0 5.0 25.0 0.0 . 32 . . Atlas-SNP SLC10A2 6555 hgsc.bcm.edu hg19 13 103705045 103705045 + Silent SNP A A T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . SLC10A2 NM_000452 exon3 c.T510A p.V170V GAGAGAAACCAGA . 94.0 25.0 87.0 0.0 . 67 . . Atlas-SNP BAZ1A 11177 hgsc.bcm.edu hg19 14 35255190 35255190 + Silent SNP A A G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . BAZ1A NM_013448 exon14 c.T1624C p.L542L GATCCAAACTTTT . 16.0 4.0 30.0 0.0 . 128 . . Atlas-SNP TLN2 83660 hgsc.bcm.edu hg19 15 63029258 63029258 + Missense_Mutation SNP T T G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . TLN2 NM_015059 exon26 c.T3540G p.D1180E TGGAGATGCAGAG . 279.0 55.0 141.0 0.0 . 253 . . Atlas-SNP CELF6 60677 hgsc.bcm.edu hg19 15 72582280 72582280 + Silent SNP C C T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . CELF6 NM_001172684 exon5 c.G603A p.A201A CCTCACCGCCATG . 91.0 5.0 78.0 0.0 . 30 . . Atlas-SNP GFOD2 81577 hgsc.bcm.edu hg19 16 67709857 67709857 + Missense_Mutation SNP A A G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . GFOD2 NM_030819 exon3 c.T359C p.V120A TTCCCTACCAGGC . 146.0 45.0 128.0 0.0 . 36 . . Atlas-SNP MED13 9969 hgsc.bcm.edu hg19 17 60064481 60064481 + Missense_Mutation SNP G G A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . MED13 NM_005121 exon12 c.C2272T p.R758C TAGGGCGTGGAGC . 189.0 57.0 134.0 0.0 . 181 . . Atlas-SNP KIAA1328 57536 hgsc.bcm.edu hg19 18 34647263 34647263 + Missense_Mutation SNP G G C novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . KIAA1328 NM_020776 exon7 c.G987C p.K329N TCCTAAGACACAT . 229.0 18.0 196.0 0.0 . 39 . . Atlas-SNP TIMM13 26517 hgsc.bcm.edu hg19 19 2427289 2427289 + Missense_Mutation SNP C C T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . TIMM13 NM_012458 exon2 c.G154A p.G52R GTTTCCCTATACA . 73.0 25.0 39.0 0.0 . 7 . . Atlas-SNP UNC13A 23025 hgsc.bcm.edu hg19 19 17720864 17720864 + Missense_Mutation SNP G G A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . UNC13A NM_001080421 exon41 c.C4696T p.R1566W ACGGCCGGAAGAT . 199.0 73.0 118.0 0.0 . 299 . . Atlas-SNP PLEKHG2 64857 hgsc.bcm.edu hg19 19 39914693 39914693 + Missense_Mutation SNP G G A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . PLEKHG2 NM_022835 exon19 c.G2920A p.D974N TTCTCTGATCAAG . 167.0 82.0 130.0 0.0 . 329 . . Atlas-SNP BPIFB2 80341 hgsc.bcm.edu hg19 20 31600638 31600638 + Missense_Mutation SNP G G A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . . NM_025227 exon4 c.G233A p.R78H TGCCCCGCCTCCA . 280.0 36.0 126.0 0.0 . . . . Atlas-SNP LAMA5 3911 hgsc.bcm.edu hg19 20 60893664 60893664 + Missense_Mutation SNP T T G novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . LAMA5 NM_005560 exon53 c.A7085C p.E2362A TGGTTCTCCTCCC . 251.0 27.0 129.0 0.0 . 268 . . Atlas-SNP ZNRF3 84133 hgsc.bcm.edu hg19 22 29440871 29440871 + Missense_Mutation SNP G G A rs372884606 TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . ZNRF3 NM_001206998 exon5 c.G737A p.R246H AGCGACGCAGTCA . 158.0 47.0 103.0 0.0 . 75 . . Atlas-SNP BMX 660 hgsc.bcm.edu hg19 X 15560134 15560134 + Missense_Mutation SNP T T A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . BMX NM_001721 exon15 c.T1424A p.F475Y TTAAATTCTATGG . 124.0 93.0 98.0 0.0 . 73 . . Atlas-SNP SEC31B 25956 hgsc.bcm.edu hg19 10 102265220 102265221 + Frame_Shift_Ins INS - - A novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . SEC31B NM_015490 exon10 c.1077_1078insT p.L359fs . . 95.0 23.0 55.0 0.0 . 84 . . Atlas-Indel,Pindel PIKFYVE 200576 hgsc.bcm.edu hg19 2 209217426 209217426 + Frame_Shift_Del DEL A A - novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . PIKFYVE NM_015040 exon39 c.5763delT p.Y1921X . . 43.0 16.0 45.0 0.0 . 223 . . Atlas-INDEL CYSLTR1 10800 hgsc.bcm.edu hg19 X 77528826 77528827 + Frame_Shift_Ins INS - - T novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . CYSLTR1 NM_006639 exon3 c.418_419insA p.A140fs . . 62.0 41.0 71.0 0.0 . 59 . . Atlas-Indel,Pindel UGT2B4 7363 hgsc.bcm.edu hg19 4 70352328 70352330 + In_Frame_Del DEL AAG AAG - novel TCGA-DD-A4NO-01A-11D-A28X-10 TCGA-DD-A4NO-10A-01D-A28X-10 AAG AAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c36b12b9-c709-4e3d-acec-e6c2dfedbb5c f388d82f-63e0-41b8-8514-839e3359602a . UGT2B4 NM_021139 exon4 c.1088_1090del p.363_364del . . 84.0 22.0 100.0 0.0 . 105 . . Atlas-Indel,Pindel