Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
NKAIN1	79570	hgsc.bcm.edu	hg19	1	31654558	31654558	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	NKAIN1	NM_024522	exon7	c.T616A	p.S206T	ACCCCGACCTGCG	.	291.0	82.0	274.0	0.0	.	21	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94476865	94476865	+	Missense_Mutation	SNP	A	A	G	rs61750575		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ABCA4	NM_000350	exon39	c.T5537C	p.I1846T	AGGTCAATGAGGC	.	317.0	17.0	377.0	0.0	.	275	.	.	Atlas-SNP
AMY2B	280	hgsc.bcm.edu	hg19	1	104120169	104120169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	AMY2B,NS,carcinoma,0,1	AMY2B	NM_020978	exon10	c.A1159G	p.I387V	GTTACTATTAATC	.	387.0	137.0	515.0	2.0	.	80	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	hg19	1	145367800	145367800	+	Missense_Mutation	SNP	G	G	A	rs201525063	bycluster	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	NBPF10,rectum,carcinoma,0,2	NBPF10	NM_001039703	exon83	c.G10396A	p.D3466N	GAAGAAGATCAAA	.	9.0	4.0	2.0	0.0	.	221	.	.	Atlas-SNP
SCAMP3	10067	hgsc.bcm.edu	hg19	1	155226183	155226183	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SCAMP3	NM_005698	exon9	c.G925C	p.A309P	AGCTGGCACCTGT	.	80.0	20.0	84.0	0.0	.	33	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237947912	237947912	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	RYR2,NS,carcinoma,0,1	RYR2	NM_001035	exon90	c.C12900T	p.S4300S	GGCCAGCGTTTTC	.	63.0	16.0	89.0	0.0	.	1273	.	.	Atlas-SNP
IL1R1	3554	hgsc.bcm.edu	hg19	2	102792895	102792895	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	IL1R1	NM_000877	exon11	c.C1386G	p.S462R	CTTCAGCTGGCTG	.	97.0	28.0	123.0	0.0	.	52	.	.	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241697828	241697828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	KIF1A	NM_001244008	exon26	c.C2531A	p.T844N	CCGCCGGTCACCA	.	206.0	15.0	262.0	0.0	.	152	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	CTNNB1,colon,carcinoma,-1,11	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	66.0	19.0	81.0	0.0	.	4904	.	.	Atlas-SNP
CHST2	9435	hgsc.bcm.edu	hg19	3	142840928	142840928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	CHST2,NS,carcinoma,0,1	CHST2	NM_004267	exon2	c.C1270T	p.R424W	GTGGTGCGGTACG	.	148.0	10.0	143.0	1.0	.	67	.	.	Atlas-SNP
JAKMIP1	152789	hgsc.bcm.edu	hg19	4	6083468	6083468	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	JAKMIP1	NM_001099433	exon6	c.A969G	p.R323R	GGTCTCTCGTGAG	.	68.0	5.0	94.0	0.0	.	250	.	.	Atlas-SNP
KCTD8	386617	hgsc.bcm.edu	hg19	4	44176930	44176930	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	KCTD8	NM_198353	exon2	c.G1299A	p.K433K	ACTTAGCTTCTCA	.	53.0	6.0	57.0	0.0	.	96	.	.	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	32074424	32074424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	PDZD2	NM_178140	exon17	c.G3212T	p.G1071V	GCCCTGGAAGCTG	.	55.0	14.0	66.0	0.0	.	306	.	.	Atlas-SNP
REXO1L1	254958	hgsc.bcm.edu	hg19	8	86573858	86573858	+	Silent	SNP	G	G	A	rs145542023		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	REXO1L1_ENST00000379010,NS,carcinoma,0,2	REXO1L1	NM_172239	exon1	c.C1869T	p.A623A	GTAGTCGGCCGCG	.	35.0	5.0	6.0	0.0	.	28	.	.	Atlas-SNP
HSD17B3	3293	hgsc.bcm.edu	hg19	9	99007649	99007649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	HSD17B3	NM_000197	exon8	c.A584G	p.Y195C	ATGGAGTAGAGAG	.	102.0	6.0	139.0	0.0	.	32	.	.	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	hg19	9	109687663	109687663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF462	NM_021224	exon3	c.G1470T	p.Q490H	CAAACAGTGTCAC	.	148.0	47.0	236.0	0.0	.	322	.	.	Atlas-SNP
RBM20	282996	hgsc.bcm.edu	hg19	10	112541163	112541163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	RBM20	NM_001134363	exon2	c.C796A	p.H266N	GAAGGGCACTACA	.	104.0	8.0	88.0	0.0	.	50	.	.	Atlas-SNP
RASSF10	644943	hgsc.bcm.edu	hg19	11	13032525	13032525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001080521	exon1	c.G1402A	p.V468M	ATGTGGGTGGACC	.	240.0	69.0	220.0	0.0	.	.	.	.	Atlas-SNP
KLRC4-KLRK1	0	hgsc.bcm.edu	hg19	12	10541390	10541390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	NM_001199805	exon7	c.G20A	p.R7Q	GACCTCCGACCAC	.	41.0	10.0	67.0	0.0	.	.	.	.	Atlas-SNP
TAS2R20	259295	hgsc.bcm.edu	hg19	12	11150077	11150077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TAS2R20	NM_176889	exon1	c.T398C	p.V133A	CCCAACACTATCA	.	49.0	9.0	96.0	0.0	.	17	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54914613	54914613	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	UNC13C	NM_001080534	exon29	c.A6195G	p.V2065V	CACTGTAAAAGGT	.	70.0	15.0	85.0	0.0	.	674	.	.	Atlas-SNP
FAM129C	199786	hgsc.bcm.edu	hg19	19	17664297	17664297	+	Silent	SNP	A	A	G	rs199532721	by1000genomes;alternate_allele	TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	FAM129C	NM_173544	exon16	c.A2019G	p.A673A	GCTTGCAGAGGGA	.	108.0	5.0	140.0	0.0	.	110	.	A|1.000;C|0.000	Atlas-SNP
SLC13A3	64849	hgsc.bcm.edu	hg19	20	45242105	45242105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	SLC13A3	NM_022829	exon2	c.C371G	p.P124R	CTGGCCGGCTGGA	.	126.0	26.0	138.0	0.0	.	88	.	.	Atlas-SNP
TUBA8	51807	hgsc.bcm.edu	hg19	22	18604415	18604415	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	TUBA8	NM_018943	exon2	c.A173T	p.N58I	CTGGCAATGGGAA	.	212.0	56.0	248.0	0.0	.	36	.	.	Atlas-SNP
ZNF280B	140883	hgsc.bcm.edu	hg19	22	22843497	22843497	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	ZNF280B	NM_080764	exon4	c.A227T	p.D76V	AGGTGATCATACT	.	69.0	5.0	69.0	0.0	.	67	.	.	Atlas-SNP
LDOC1L	84247	hgsc.bcm.edu	hg19	22	44892793	44892793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	LDOC1L	NM_032287	exon2	c.G644T	p.G215V	CAAGGCCCCGTGC	.	47.0	14.0	53.0	0.0	.	24	.	.	Atlas-SNP
ND2	0	hgsc.bcm.edu	hg19	MT	4993	4993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	.	ENST00000361453	exon1	c.T524C	p.L175P	CCCAGCTACGCAA	.	657.0	30.0	157.0	0.0	.	.	.	.	Atlas-SNP
MZF1	7593	hgsc.bcm.edu	hg19	19	59074590	59074612	+	Frame_Shift_Del	DEL	CCCCGCCCCCAGTGCTGGGGCGG	CCCCGCCCCCAGTGCTGGGGCGG	-	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	CCCCGCCCCCAGTGCTGGGGCGG	CCCCGCCCCCAGTGCTGGGGCGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	MZF1	NM_003422	exon6	c.1033_1055del	p.345_352del	.	.	64.0	10.0	26.0	0.0	.	37	.	.	Atlas-Indel,Pindel
IL6ST	3572	hgsc.bcm.edu	hg19	5	55260056	55260067	+	In_Frame_Del	DEL	GACAAAATACAC	GACAAAATACAC	-	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	GACAAAATACAC	GACAAAATACAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	IL6ST	NM_001190981	exon6	c.566_577del	p.189_193del	.	.	119.0	13.0	210.0	0.0	.	75	.	.	Atlas-Indel,Pindel
CTIF	9811	hgsc.bcm.edu	hg19	18	46385908	46385908	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NL-01A-11D-A28X-10	TCGA-DD-A4NL-11A-11D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3d09e93b-51df-4683-a2fa-94c85cc1c0ab	04c60928-59b2-44bf-9d49-57bfbdd82528	.	CTIF	NM_001142397	exon13	c.1780delA	p.T594fs	.	.	225.0	11.0	262.0	0.0	.	102	.	.	Pindel