Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CPSF3L	54973	hgsc.bcm.edu	hg19	1	1257366	1257366	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CPSF3L	.	.	.	.	GCTGCCTGCCACA	.	151.0	81.0	272.0	0.0	.	33	.	.	Atlas-SNP
CCDC30	728621	hgsc.bcm.edu	hg19	1	43076659	43076659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CCDC30	NM_001080850	exon10	c.G1394A	p.S465N	TCAAAAGCAACCA	.	35.0	9.0	62.0	0.0	.	78	.	.	Atlas-SNP
CD1B	910	hgsc.bcm.edu	hg19	1	158301185	158301185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CD1B	NM_001764	exon1	c.C29A	p.A10D	AGAACAGCTAACA	.	292.0	62.0	271.0	0.0	.	78	.	.	Atlas-SNP
DARC	2532	hgsc.bcm.edu	hg19	1	159175737	159175737	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DARC	NM_001122951	exon1	c.A514T	p.T172S	GGGCTCACTGTGG	.	104.0	23.0	92.0	0.0	.	76	.	.	Atlas-SNP
ANGPTL1	9068	hgsc.bcm.edu	hg19	1	178822882	178822882	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANGPTL1	NM_004673	exon4	c.T864C	p.H288H	GACCGAATGCCCA	.	112.0	19.0	113.0	0.0	.	41	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181767517	181767517	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	CACNA1E_ENST00000367573,caecum,carcinoma,+1,1	CACNA1E	NM_001205293	exon48	c.G6489A	p.P2163P	CGTCCCGCCAAAG	.	111.0	34.0	89.0	1.0	.	778	.	.	Atlas-SNP
TGFB2	7042	hgsc.bcm.edu	hg19	1	218609331	218609331	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TGFB2	NM_001135599	exon6	c.A858G	p.T286T	CTCCACATATACC	.	73.0	22.0	66.0	0.0	.	102	.	.	Atlas-SNP
SNTG2	54221	hgsc.bcm.edu	hg19	2	1093900	1093900	+	Missense_Mutation	SNP	C	C	T	rs192264442	bycluster;by1000genomes;alternate_allele	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNTG2	NM_018968	exon3	c.C229T	p.R77C	ACACTCCGCAGAC	.	88.0	4.0	116.0	0.0	.	125	.	C|0.998;A|0.002	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15378653	15378653	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NBAS	NM_015909	exon45	c.C5882G	p.S1961X	GCAAGTGATTTCT	.	82.0	35.0	120.0	0.0	.	246	.	.	Atlas-SNP
LHCGR	3973	hgsc.bcm.edu	hg19	2	48958372	48958372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	LHCGR,NS,carcinoma,0,1	LHCGR	NM_000233	exon2	c.T227G	p.I76R	ATTTTTATGACCT	.	29.0	11.0	31.0	0.0	.	154	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54876897	54876897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SPTBN1	NM_003128	exon26	c.T5348G	p.L1783R	ATGGCCTCAATGA	.	258.0	80.0	279.0	0.0	.	378	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179499955	179499955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TTN	NM_001267550	exon228	c.A41961C	p.E13987D	TGAGATTTCTGCA	.	119.0	39.0	130.0	0.0	.	18412	.	.	Atlas-SNP
CYP27A1	1593	hgsc.bcm.edu	hg19	2	219674376	219674376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CYP27A1	NM_000784	exon2	c.C332T	p.A111V	CCAGTGCCCCGCT	.	205.0	73.0	211.0	0.0	.	52	.	.	Atlas-SNP
GADL1	339896	hgsc.bcm.edu	hg19	3	30819694	30819694	+	Nonsense_Mutation	SNP	C	C	A	rs145224145	bycluster;by1000genomes;alternate_allele	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GADL1	NM_207359	exon14	c.G1369T	p.E457X	AGAACTCGGGTCC	.	230.0	78.0	298.0	1.0	.	91	.	C|1.000;T|0.000	Atlas-SNP
SNRK	54861	hgsc.bcm.edu	hg19	3	43381915	43381915	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNRK	NM_017719	exon5	c.C868G	p.L290V	AAAAATCTCTCGG	.	217.0	70.0	200.0	0.0	.	118	.	.	Atlas-SNP
OR5K3	403277	hgsc.bcm.edu	hg19	3	98109590	98109590	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OR5K3	NM_001005516	exon1	c.G81C	p.L27L	TGTTCTGTTTGTG	.	218.0	58.0	289.0	0.0	.	60	.	.	Atlas-SNP
ST3GAL6	10402	hgsc.bcm.edu	hg19	3	98487331	98487331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ST3GAL6	NM_001271145	exon2	c.A206C	p.Y69S	TCCTCTATTATGT	.	121.0	41.0	188.0	0.0	.	41	.	.	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113376101	113376101	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KIAA2018	NM_001009899	exon7	c.A4428G	p.Q1476Q	TTGTTGTTGTTGC	.	115.0	7.0	121.0	0.0	.	180	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121416717	121416717	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GOLGB1	NM_001256486	exon13	c.C2653T	p.Q885X	AGAGCTGATCCAT	.	96.0	29.0	137.0	0.0	.	319	.	.	Atlas-SNP
NLGN1	22871	hgsc.bcm.edu	hg19	3	173998531	173998531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NLGN1	NM_014932	exon7	c.G1910T	p.R637I	CTTTCAGACCTAC	.	157.0	53.0	186.0	0.0	.	209	.	.	Atlas-SNP
KCNMB3	27094	hgsc.bcm.edu	hg19	3	178984440	178984440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KCNMB3	NM_171828	exon1	c.G59A	p.G20E	TACCTCCCCTGGC	.	69.0	29.0	87.0	0.0	.	46	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184947229	184947229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	EHHADH	NM_001966	exon4	c.A454G	p.I152V	AGGTAATTAAGTC	.	106.0	40.0	120.0	0.0	.	73	.	.	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	hg19	4	4199475	4199475	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OTOP1	NM_177998	exon5	c.G1086T	p.G362G	CGCAGCCCCCATA	.	176.0	54.0	179.0	0.0	.	118	.	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104066455	104066455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CENPE	NM_001813	exon32	c.A4609G	p.I1537V	GTTTTATATTAAA	.	49.0	14.0	52.0	0.0	.	253	.	.	Atlas-SNP
CDYL	9425	hgsc.bcm.edu	hg19	6	4935914	4935914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CDYL	NM_004824	exon3	c.G857C	p.R286T	CCTACAGATACAG	.	251.0	167.0	170.0	1.0	.	74	.	.	Atlas-SNP
WASL	8976	hgsc.bcm.edu	hg19	7	123334793	123334793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	WASL	NM_003941	exon8	c.G802A	p.V268I	TTTTAACAGCTTC	.	100.0	24.0	87.0	0.0	.	70	.	.	Atlas-SNP
SNTB1	6641	hgsc.bcm.edu	hg19	8	121824005	121824005	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNTB1	NM_021021	exon1	c.G79T	p.E27X	AAACTTCCAGCAG	.	42.0	5.0	19.0	0.0	.	54	.	.	Atlas-SNP
PTPLAD2	401494	hgsc.bcm.edu	hg19	9	21008109	21008109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	PTPLAD2	NM_001010915	exon6	c.C527T	p.S176L	CCAAATGATTCAA	.	84.0	21.0	133.0	0.0	.	26	.	.	Atlas-SNP
DCLRE1C	64421	hgsc.bcm.edu	hg19	10	14951131	14951131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DCLRE1C	NM_001033855	exon14	c.G1355T	p.C452F	TCTTCACAATCTA	.	107.0	31.0	99.0	0.0	.	136	.	.	Atlas-SNP
GAD2	2572	hgsc.bcm.edu	hg19	10	26505807	26505807	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GAD2	NM_000818	exon1	c.C69T	p.P23P	GAATCCCGGCACA	.	59.0	4.0	52.0	0.0	.	116	.	.	Atlas-SNP
GPRIN2	9721	hgsc.bcm.edu	hg19	10	46999052	46999052	+	Missense_Mutation	SNP	A	A	G	rs147004572		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GPRIN2	NM_014696	exon3	c.A172G	p.R58G	AGCACCAGACCCC	.	18.0	5.0	4.0	0.0	.	94	.	A|1.000;G|0.000	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1267292	1267292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MUC5B	NM_002458	exon31	c.C9182A	p.S3061Y	CCAAATCCACAGC	.	409.0	123.0	397.0	1.0	.	473	.	.	Atlas-SNP
UBQLN3	50613	hgsc.bcm.edu	hg19	11	5529136	5529136	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UBQLN3	NM_017481	exon2	c.G1653T	p.G551G	ACCCGTCCCTGCT	.	95.0	27.0	89.0	0.0	.	107	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6567458	6567458	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DNHD1	NM_144666	exon21	c.T5289C	p.Y1763Y	CTTGTATGCCCCA	.	116.0	31.0	104.0	0.0	.	198	.	.	Atlas-SNP
DKK3	27122	hgsc.bcm.edu	hg19	11	11987381	11987381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DKK3	NM_001018057	exon6	c.A805T	p.S269C	GGCCACTGGCACA	.	62.0	19.0	58.0	0.0	.	35	.	.	Atlas-SNP
HIPK3	10114	hgsc.bcm.edu	hg19	11	33308240	33308240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	HIPK3	NM_001048200	exon2	c.G280A	p.V94I	ACAAAGGTCATAG	.	100.0	31.0	105.0	0.0	.	92	.	.	Atlas-SNP
TPCN2	219931	hgsc.bcm.edu	hg19	11	68854594	68854594	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TPCN2	NM_139075	exon24	c.G2100A	p.K700K	TCACAAGTGGGAC	.	69.0	22.0	67.0	0.0	.	63	.	.	Atlas-SNP
C11orf63	79864	hgsc.bcm.edu	hg19	11	122774639	122774639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C11orf63	NM_024806	exon3	c.A351G	p.Q117Q	GCAACAACCAATA	.	66.0	24.0	86.0	0.0	.	116	.	.	Atlas-SNP
C1RL	51279	hgsc.bcm.edu	hg19	12	7249174	7249174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	C1RL,colon,carcinoma,0,1	C1RL	NM_016546	exon6	c.C1277T	p.T426M	CTTTGCGTCTCAT	.	206.0	73.0	262.0	2.0	.	39	.	.	Atlas-SNP
RASSF8	11228	hgsc.bcm.edu	hg19	12	26217450	26217450	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RASSF8	NM_007211	exon4	c.C123A	p.T41T	GTACACCCTTATA	.	104.0	32.0	163.0	0.0	.	56	.	.	Atlas-SNP
MRPS35	60488	hgsc.bcm.edu	hg19	12	27908279	27908279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MRPS35	NM_021821	exon8	c.G868A	p.E290K	GAAATTGAAGAGT	.	70.0	27.0	120.0	0.0	.	26	.	.	Atlas-SNP
DDX11	1663	hgsc.bcm.edu	hg19	12	31249813	31249813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DDX11	NM_030653	exon17	c.G1651A	p.E551K	GCAGACGAGAGTC	.	183.0	67.0	164.0	0.0	.	188	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88479875	88479875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CEP290	NM_025114	exon34	c.A4378C	p.I1460L	CCTTAATTTTCCT	.	48.0	16.0	47.0	0.0	.	195	.	.	Atlas-SNP
UBE2N	7334	hgsc.bcm.edu	hg19	12	93835657	93835657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UBE2N	NM_003348	exon1	c.G4A	p.A2T	GCCCGGCCATCTT	.	139.0	57.0	115.0	0.0	.	20	.	.	Atlas-SNP
UNC119B	84747	hgsc.bcm.edu	hg19	12	121151187	121151187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UNC119B	NM_001080533	exon2	c.T355G	p.S119A	TGCGTTTCAGGTA	.	151.0	49.0	171.0	0.0	.	21	.	.	Atlas-SNP
FRY	10129	hgsc.bcm.edu	hg19	13	32850640	32850640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FRY	NM_023037	exon57	c.G8326A	p.V2776M	TTCAGTGTGTTAG	.	82.0	35.0	161.0	0.0	.	312	.	.	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39886581	39886581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	THBS1	NM_003246	exon21	c.G3445A	p.G1149R	AGACTAGGGTTGT	.	95.0	29.0	108.0	0.0	.	106	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88498779	88498779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ZNF469	NM_001127464	exon2	c.C4817T	p.T1606I	AATCCACTGCACA	.	11.0	9.0	0.0	0.0	.	121	.	.	Atlas-SNP
TMIGD1	388364	hgsc.bcm.edu	hg19	17	28656378	28656378	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TMIGD1	NM_206832	exon3	c.C252T	p.S84S	AGAGCTGGAATTG	.	176.0	47.0	186.0	0.0	.	38	.	.	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	hg19	17	39596873	39596873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KRT38	NM_006771	exon1	c.A301G	p.N101D	GGCCATTCAGGGT	.	153.0	70.0	170.0	0.0	.	63	.	.	Atlas-SNP
C3	718	hgsc.bcm.edu	hg19	19	6693481	6693481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C3	NM_000064	exon25	c.G3172T	p.A1058S	TGAAGGCCAGCTG	.	32.0	9.0	39.0	0.0	.	192	.	.	Atlas-SNP
ANO8	57719	hgsc.bcm.edu	hg19	19	17443815	17443815	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANO8	NM_020959	exon5	c.C510T	p.R170R	CCAGAAGCGGATG	.	85.0	29.0	98.0	0.0	.	67	.	.	Atlas-SNP
AKT2	208	hgsc.bcm.edu	hg19	19	40742001	40742001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	AKT2,NS,carcinoma,-1,1	AKT2	NM_001626	exon11	c.A971G	p.D324G	TCATTGTCCTCCA	.	86.0	24.0	64.0	0.0	.	53	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42837807	42837807	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MEGF8	NM_001271938	exon2	c.G238T	p.E80X	GACACAGAGTGCA	.	115.0	35.0	120.0	0.0	.	358	.	.	Atlas-SNP
EPS8L1	54869	hgsc.bcm.edu	hg19	19	55598913	55598913	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	EPS8L1	NM_133180	exon20	c.A2103T	p.S701S	AGTGTCAGAGCTG	.	214.0	67.0	226.0	0.0	.	122	.	.	Atlas-SNP
RBL1	5933	hgsc.bcm.edu	hg19	20	35683995	35683995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RBL1	NM_183404	exon11	c.G1428A	p.M476I	CTGAACCATTACA	.	79.0	39.0	71.0	0.0	.	114	.	.	Atlas-SNP
MYT1	4661	hgsc.bcm.edu	hg19	20	62839416	62839416	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MYT1	NM_004535	exon7	c.G867A	p.E289E	GGAGGAGGAGGAA	.	80.0	14.0	68.0	0.0	.	152	.	.	Atlas-SNP
MYT1	4661	hgsc.bcm.edu	hg19	20	62839434	62839434	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MYT1	NM_004535	exon7	c.G885A	p.E295E	AGAGGAGGAGGAA	.	96.0	8.0	89.0	0.0	.	152	.	.	Atlas-SNP
ADAM19	8728	hgsc.bcm.edu	hg19	5	156918883	156918885	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ADAM19	NM_033274	exon17	c.1945_1947del	p.649_649del	.	.	157.0	44.0	208.0	0.0	.	216	.	.	Atlas-Indel,Pindel
FAM120A	23196	hgsc.bcm.edu	hg19	9	96233651	96233652	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FAM120A	NM_014612	exon2	c.703_704insT	p.I235fs	.	.	162.0	32.0	184.0	0.0	.	105	.	.	Atlas-Indel,Pindel
LRRN3	54674	hgsc.bcm.edu	hg19	7	110764538	110764538	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	LRRN3	NM_001099658	exon3	c.1709delG	p.R570fs	.	.	70.0	20.0	59.0	0.0	.	132	.	.	Atlas-Indel,Pindel
KPNA5	3841	hgsc.bcm.edu	hg19	6	117019926	117019927	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KPNA5	NM_002269	exon5	c.399_400del	p.133_134del	.	.	48.0	23.0	108.0	0.0	.	57	.	.	Atlas-Indel,Pindel
WEE2	494551	hgsc.bcm.edu	hg19	7	141408580	141408580	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	WEE2	NM_001105558	exon1	c.21delC	p.D7fs	.	.	96.0	50.0	101.0	0.0	.	59	.	.	Atlas-Indel,Pindel
APOB	338	hgsc.bcm.edu	hg19	2	21229380	21229381	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	APOB	NM_000384	exon26	c.10360_10361insT	p.V3454fs	.	.	181.0	58.0	196.0	0.0	.	761	.	.	Atlas-Indel,Pindel
OR4Q3	441669	hgsc.bcm.edu	hg19	14	20215682	20215683	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OR4Q3	NM_172194	exon1	c.96_97insT	p.L32fs	.	.	74.0	12.0	85.0	0.0	.	117	.	.	Atlas-INDEL