Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
NASP	4678	hgsc.bcm.edu	hg19	1	46073649	46073649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NASP	NM_002482	exon6	c.G1066T	p.A356S	GCCTCAGCTGTAG	.	339.0	57.0	339.0	0.0	.	77	.	.	Atlas-SNP
FOXD2	2306	hgsc.bcm.edu	hg19	1	47904363	47904363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	FOXD2	NM_004474	exon1	c.G556C	p.V186L	TGCTTCGTCAAGA	.	268.0	45.0	191.0	0.0	.	16	.	.	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109794691	109794691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CELSR2	NM_001408	exon1	c.G1990A	p.G664S	AGTGGTGGTGGGC	.	322.0	63.0	374.0	0.0	.	228	.	.	Atlas-SNP
SEMA4A	64218	hgsc.bcm.edu	hg19	1	156146462	156146462	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SEMA4A	NM_001193300	exon15	c.G1960C	p.A654P	GAACTGGCAGGCA	.	143.0	34.0	151.0	0.0	.	75	.	.	Atlas-SNP
ARHGAP25	9938	hgsc.bcm.edu	hg19	2	69049534	69049534	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ARHGAP25	NM_001007231	exon10	c.C1263T	p.D421D	GGAGGACAGCAGC	.	108.0	9.0	104.0	0.0	.	175	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152506778	152506778	+	Missense_Mutation	SNP	C	C	T	rs373589529		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	NEB_ENST00000427231,rectum,carcinoma,0,3	NEB	NM_004543	exon54	c.G7343A	p.R2448H	GGCTGACGATATT	.	215.0	31.0	255.0	1.0	.	1697	.	.	Atlas-SNP
G6PC2	57818	hgsc.bcm.edu	hg19	2	169757874	169757874	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	G6PC2	NM_021176	exon1	c.A33C	p.I11I	GCTCATAATTCAG	.	94.0	21.0	80.0	0.0	.	44	.	.	Atlas-SNP
TRPC1	7220	hgsc.bcm.edu	hg19	3	142499740	142499740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	TRPC1,NS,carcinoma,-1,1	TRPC1	NM_001251845	exon6	c.C829T	p.R277W	CAAGCCCGGAATT	.	83.0	4.0	106.0	0.0	.	82	.	.	Atlas-SNP
GPR171	29909	hgsc.bcm.edu	hg19	3	150916346	150916346	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	GPR171,NS,carcinoma,0,1	GPR171	NM_013308	exon3	c.G828T	p.S276S	CAGGTTCGACACA	.	173.0	22.0	158.0	1.0	.	36	.	.	Atlas-SNP
RGS12	6002	hgsc.bcm.edu	hg19	4	3318591	3318591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RGS12	NM_002926	exon2	c.G694A	p.V232M	ATGATCGTGGGCT	.	199.0	39.0	167.0	0.0	.	128	.	.	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	hg19	4	134072907	134072907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PCDH10	NM_032961	exon1	c.G1612A	p.D538N	CTGAAGGACTTCA	.	194.0	44.0	193.0	0.0	.	290	.	.	Atlas-SNP
NPY5R	4889	hgsc.bcm.edu	hg19	4	164271585	164271585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NPY5R	NM_006174	exon4	c.C160A	p.L54I	AGTCTTCTTGGCT	.	196.0	33.0	165.0	0.0	.	101	.	.	Atlas-SNP
PAPD7	11044	hgsc.bcm.edu	hg19	5	6754921	6754921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PAPD7	NM_006999	exon13	c.G1492A	p.G498S	GGCGGCGGCTACA	.	268.0	51.0	210.0	0.0	.	69	.	.	Atlas-SNP
UTP15	84135	hgsc.bcm.edu	hg19	5	72874667	72874667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	UTP15	NM_032175	exon10	c.G1136T	p.R379I	TCGATAGAGTTCT	.	151.0	47.0	116.0	0.0	.	30	.	.	Atlas-SNP
PCDHGA6	56109	hgsc.bcm.edu	hg19	5	140755726	140755726	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	PCDHGA6_ENST00000517434,NS,carcinoma,0,1	PCDHGA6	NM_018919	exon1	c.C2076T	p.Y692Y	TCTGTACCTGGTG	.	85.0	21.0	73.0	0.0	.	219	.	.	Atlas-SNP
MYO6	4646	hgsc.bcm.edu	hg19	6	76589582	76589582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	MYO6,colon,carcinoma,0,1	MYO6	NM_004999	exon21	c.G2123A	p.R708Q	CATCACGAGCTTC	.	240.0	39.0	210.0	0.0	.	124	.	.	Atlas-SNP
GBAS	2631	hgsc.bcm.edu	hg19	7	56049254	56049254	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GBAS	NM_001483	exon4	c.C367T	p.Q123X	CAGGACCAAGCTG	.	184.0	64.0	144.0	0.0	.	16	.	.	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	hg19	7	77885584	77885584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MAGI2	NM_012301	exon10	c.G1723T	p.D575Y	GACCATCAGTTGG	.	479.0	161.0	391.0	0.0	.	246	.	.	Atlas-SNP
GLDC	2731	hgsc.bcm.edu	hg19	9	6558589	6558589	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GLDC	NM_000170	exon17	c.G2022T	p.G674G	GATATTCCCATAT	.	132.0	25.0	137.0	0.0	.	118	.	.	Atlas-SNP
CHCHD1	118487	hgsc.bcm.edu	hg19	10	75542873	75542873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CHCHD1	NM_203298	exon3	c.G285T	p.E95D	GGGAGAGTCTGGG	.	45.0	4.0	63.0	0.0	.	6	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6588587	6588587	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DNHD1	NM_144666	exon36	c.T11848A	p.S3950T	AAAGCATCAGAGC	.	142.0	25.0	132.0	0.0	.	198	.	.	Atlas-SNP
OR8H1	219469	hgsc.bcm.edu	hg19	11	56058048	56058048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR8H1	NM_001005199	exon1	c.G491A	p.R164K	TGCAGTCTGCTCA	.	254.0	51.0	158.0	0.0	.	89	.	.	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	hg19	11	56344846	56344846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.,1	OR5M10	NM_001004741	exon1	c.A352T	p.M118L	ATGCCATTGAAGC	.	396.0	18.0	149.0	0.0	.	56	.	.	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	hg19	11	56344847	56344847	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR5M10	NM_001004741	exon1	c.A351C	p.S117S	TGCCATTGAAGCA	.	395.0	16.0	148.0	0.0	.	56	.	.	Atlas-SNP
GSTP1	2950	hgsc.bcm.edu	hg19	11	67352223	67352223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	GSTP1	NM_000852	exon4	c.G212A	p.R71H	TCCTGCGTCACCT	.	533.0	26.0	115.0	0.0	.	21	.	.	Atlas-SNP
ACAT1	38	hgsc.bcm.edu	hg19	11	108010844	108010844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ACAT1	NM_000019	exon7	c.A632G	p.Q211R	ATGAACAGGACGC	.	104.0	22.0	127.0	0.0	.	35	.	.	Atlas-SNP
HMBS	3145	hgsc.bcm.edu	hg19	11	118955777	118955777	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	HMBS	NM_000190	exon1	c.33+1G>A	.	ACGGCGGTGAGTG	.	110.0	31.0	135.0	0.0	.	27	.	.	Atlas-SNP
PARP11	57097	hgsc.bcm.edu	hg19	12	3939151	3939151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	PARP11	NM_020367	exon2	c.A52G	p.K18E	TTGTTTTAGAAAA	.	107.0	19.0	123.0	0.0	.	39	.	.	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40707956	40707956	+	Silent	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LRRK2	NM_198578	exon32	c.T4719G	p.V1573V	CGCAGTTCACTTT	.	197.0	50.0	148.0	0.0	.	763	.	.	Atlas-SNP
CSAD	51380	hgsc.bcm.edu	hg19	12	53553482	53553482	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CSAD	NM_015989	exon16	c.T1314C	p.N438N	ACACACATTGACA	.	130.0	41.0	96.0	0.0	.	66	.	.	Atlas-SNP
AVPR1A	552	hgsc.bcm.edu	hg19	12	63544481	63544481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	AVPR1A,colon,carcinoma,0,1	AVPR1A	NM_000706	exon1	c.C136T	p.R46C	CGTTGCGCACGTC	.	26.0	3.0	13.0	0.0	.	85	.	.	Atlas-SNP
MYO1H	283446	hgsc.bcm.edu	hg19	12	109879426	109879426	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MYO1H	NM_001101421	exon25	c.C2497T	p.Q833X	ATGCAGCAAAAGG	.	270.0	41.0	207.0	0.0	.	98	.	.	Atlas-SNP
RAD9B	144715	hgsc.bcm.edu	hg19	12	110956742	110956742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RAD9B	NM_152442	exon8	c.A766G	p.K256E	CCTGGGAAGTAGG	.	80.0	4.0	38.0	0.0	.	50	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23912521	23912521	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SACS	NM_014363	exon10	c.T5494A	p.F1832I	GGGAAAACTTCAG	.	89.0	8.0	91.0	0.0	.	871	.	.	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	hg19	13	36428640	36428640	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DCLK1	NM_004734	exon6	c.A1031C	p.Q344P	ACCCTCTGCTTCC	.	144.0	30.0	124.0	0.0	.	350	.	.	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	hg19	13	76382095	76382095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LMO7	NM_015842	exon7	c.G977A	p.C326Y	TTCTCTGTGTACT	.	52.0	8.0	56.0	0.0	.	334	.	.	Atlas-SNP
KIAA0586	9786	hgsc.bcm.edu	hg19	14	58965663	58965663	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	KIAA0586	NM_001244189	exon29	c.T4312G	p.F1438V	CGGCAATTTGACA	.	148.0	49.0	107.0	0.0	.	180	.	.	Atlas-SNP
NUMB	8650	hgsc.bcm.edu	hg19	14	73746111	73746111	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NUMB	NM_001005743	exon12	c.T1118G	p.F373C	ACATGGAAGGCTG	.	218.0	33.0	160.0	0.0	.	56	.	.	Atlas-SNP
KIAA1024	23251	hgsc.bcm.edu	hg19	15	79748973	79748973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	KIAA1024	NM_015206	exon2	c.G484T	p.D162Y	AAGATGGACTGCA	.	66.0	14.0	85.0	0.0	.	146	.	.	Atlas-SNP
MAN2A2	4122	hgsc.bcm.edu	hg19	15	91461902	91461902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MAN2A2	NM_006122	exon21	c.G3217A	p.A1073T	GAGACCGCACTCA	.	54.0	10.0	48.0	0.0	.	99	.	.	Atlas-SNP
GSE1	23199	hgsc.bcm.edu	hg19	16	85697087	85697087	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	.	NM_014615	exon11	c.G2511A	p.Q837Q	GCGGCAGACGCCT	.	107.0	26.0	112.0	0.0	.	.	.	.	Atlas-SNP
USP6	9098	hgsc.bcm.edu	hg19	17	5042895	5042895	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	USP6_ENST00000250066,NS,carcinoma,0,2	USP6	NM_004505	exon14	c.G1424A	p.W475X	TTGAATGGAGCTG	.	46.0	8.0	29.0	0.0	.	213	.	.	Atlas-SNP
UNC45B	146862	hgsc.bcm.edu	hg19	17	33486549	33486549	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	UNC45B	NM_001267052	exon8	c.T964A	p.Y322N	ACCATCTATGTGG	.	76.0	16.0	71.0	0.0	.	133	.	.	Atlas-SNP
CDK12	51755	hgsc.bcm.edu	hg19	17	37619175	37619175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CDK12	NM_016507	exon1	c.C851T	p.A284V	CTTCGGCCTACCA	.	114.0	15.0	105.0	0.0	.	161	.	.	Atlas-SNP
KRT27	342574	hgsc.bcm.edu	hg19	17	38935981	38935981	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	KRT27	NM_181537	exon4	c.A817T	p.R273W	CGTCCCTGCGGTT	.	80.0	17.0	82.0	0.0	.	41	.	.	Atlas-SNP
LPIN2	9663	hgsc.bcm.edu	hg19	18	2939526	2939526	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LPIN2	NM_014646	exon6	c.A774G	p.S258S	AGACTCTGATCTG	.	59.0	15.0	58.0	0.0	.	75	.	.	Atlas-SNP
DSC2	1824	hgsc.bcm.edu	hg19	18	28650775	28650775	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DSC2	NM_024422	exon14	c.A2167T	p.K723X	GTTGTTTAGACGT	.	80.0	13.0	93.0	0.0	.	168	.	.	Atlas-SNP
OR7A5	26659	hgsc.bcm.edu	hg19	19	14938783	14938783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR7A5	NM_017506	exon1	c.G271T	p.V91F	TGATGACTTTGTT	.	171.0	8.0	125.0	0.0	.	43	.	.	Atlas-SNP
OR7A10	390892	hgsc.bcm.edu	hg19	19	14952139	14952139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	OR7A10	NM_001005190	exon1	c.T551C	p.V184A	TGGACCACCTGAT	.	189.0	20.0	169.0	0.0	.	33	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15291637	15291637	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	NOTCH3	NM_000435	exon19	c.G2997T	p.T999T	CACCAGCGTCTGG	.	96.0	4.0	64.0	0.0	.	340	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22940429	22940429	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	ZNF99,NS,carcinoma,+1,1	ZNF99	NM_001080409	exon4	c.G2282C	p.C761S	CATTTGCAGGGTT	.	15.0	4.0	12.0	0.0	.	273	.	.	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	hg19	20	52198139	52198139	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZNF217	NM_006526	exon1	c.C1227G	p.T409T	AGACATGGTGGGC	.	76.0	10.0	58.0	0.0	.	227	.	.	Atlas-SNP
RBM11	54033	hgsc.bcm.edu	hg19	21	15599354	15599354	+	Missense_Mutation	SNP	G	G	T	rs139439630	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RBM11	NM_144770	exon5	c.G586T	p.D196Y	CCAAGTGACTCTG	.	434.0	89.0	406.0	0.0	.	41	.	G|0.988;A|0.012	Atlas-SNP
LTN1	26046	hgsc.bcm.edu	hg19	21	30343736	30343736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	LTN1	NM_015565	exon7	c.G979T	p.A327S	ACAATGCAGAGAC	.	113.0	28.0	126.0	0.0	.	141	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37618218	37618218	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	DOPEY2	NM_005128	exon19	c.C3940T	p.L1314L	CTGGAGCTGCTCA	.	117.0	28.0	101.0	0.0	.	184	.	.	Atlas-SNP
TTC28	23331	hgsc.bcm.edu	hg19	22	28378887	28378887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TTC28	NM_001145418	exon23	c.G6768C	p.E2256D	GGACATCTCTGAG	.	185.0	66.0	141.0	0.0	.	84	.	.	Atlas-SNP
FOXRED2	80020	hgsc.bcm.edu	hg19	22	36902221	36902221	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	FOXRED2	NM_001102371	exon2	c.G249C	p.K83N	GTACCGCTTGTTG	.	119.0	33.0	95.0	0.0	.	48	.	.	Atlas-SNP
ZC3H7B	23264	hgsc.bcm.edu	hg19	22	41752683	41752683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	ZC3H7B	NM_017590	exon22	c.G2552C	p.S851T	AGAACAGCAACAG	.	117.0	10.0	93.0	0.0	.	82	.	.	Atlas-SNP
SYP	6855	hgsc.bcm.edu	hg19	X	49049852	49049852	+	Silent	SNP	C	C	A	rs140804164	alternate_allele	TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	SYP	NM_003179	exon5	c.G492T	p.L164L	ATCTGACAGCCCC	.	271.0	43.0	297.0	0.0	.	71	.	C|1.000;T|0.000	Atlas-SNP
P2RY4	5030	hgsc.bcm.edu	hg19	X	69478612	69478612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	P2RY4	NM_002565	exon1	c.A863G	p.Y288C	ACTTTATAGACCA	.	431.0	95.0	474.0	0.0	.	39	.	.	Atlas-SNP
RNF113A	7737	hgsc.bcm.edu	hg19	X	119005302	119005302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	RNF113A	NM_006978	exon1	c.A275T	p.E92V	TCGGGCTCATTTT	.	167.0	10.0	178.0	0.0	.	39	.	.	Atlas-SNP
MAP7D3	79649	hgsc.bcm.edu	hg19	X	135309506	135309506	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	MAP7D3	NM_024597	exon12	c.A1971G	p.Q657Q	ATTTTGTTGCTGC	.	283.0	46.0	251.0	0.0	.	102	.	.	Atlas-SNP
CHST13	166012	hgsc.bcm.edu	hg19	3	126255177	126255182	+	In_Frame_Del	DEL	AGCTCT	AGCTCT	-	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	AGCTCT	AGCTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	CHST13	NM_152889	exon2	c.160_165del	p.54_55del	.	.	159.0	17.0	158.0	0.0	.	21	.	.	Atlas-Indel,Pindel
TGS1	96764	hgsc.bcm.edu	hg19	8	56699053	56699053	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4ND-01A-11D-A25V-10	TCGA-DD-A4ND-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d9c5493e-f969-4c04-a646-9a3134011021	40381948-7dff-4254-8b81-bb6f34579ebf	.	TGS1	NM_024831	exon4	c.595delG	p.E199fs	.	.	93.0	39.0	83.0	0.0	.	66	.	.	Atlas-Indel,Pindel