Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ADAMTSL4 54507 hgsc.bcm.edu hg19 1 150532541 150532541 + Missense_Mutation SNP C C A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ADAMTSL4 NM_019032 exon19 c.C3094A p.Q1032K GATGATCAATGCA . 188.0 46.0 185.0 0.0 . 101 . . Atlas-SNP SLC35F3 148641 hgsc.bcm.edu hg19 1 234041461 234041461 + Silent SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . SLC35F3 NM_173508 exon2 c.C240T p.I80I GCGCATCACTGGC . 292.0 75.0 230.0 0.0 . 81 . . Atlas-SNP SCN3A 6328 hgsc.bcm.edu hg19 2 165946841 165946841 + Missense_Mutation SNP T T C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . SCN3A NM_006922 exon28 c.A5822G p.K1941R TCTTGTTTTATAG . 335.0 84.0 271.0 0.0 . 544 . . Atlas-SNP MYH15 22989 hgsc.bcm.edu hg19 3 108203986 108203986 + Missense_Mutation SNP A A G novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . MYH15 NM_014981 exon12 c.T1126C p.F376L GTTTAAATTTCAT . 150.0 38.0 173.0 0.0 . 223 . . Atlas-SNP PLEKHG4B 153478 hgsc.bcm.edu hg19 5 161903 161903 + Silent SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . PLEKHG4B NM_052909 exon10 c.C1425T p.S475S GCAATCCTGCCAG . 111.0 16.0 129.0 0.0 . 167 . . Atlas-SNP ITGA1 3672 hgsc.bcm.edu hg19 5 52193327 52193327 + Missense_Mutation SNP T T C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ITGA1 NM_181501 exon10 c.T1132C p.S378P GAAATGTCTCAGA . 90.0 15.0 94.0 0.0 . 112 . . Atlas-SNP ANKRD32 84250 hgsc.bcm.edu hg19 5 94001726 94001726 + Missense_Mutation SNP T T G novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ANKRD32 NM_032290 exon12 c.T1529G p.I510S TCCTTATCAGGTA . 60.0 5.0 43.0 0.0 . 117 . . Atlas-SNP MGAT4B 11282 hgsc.bcm.edu hg19 5 179226059 179226059 + Silent SNP G G A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . MGAT4B NM_054013 exon10 c.C1257T p.S419S GCTCGTGCTCACC . 367.0 42.0 348.0 0.0 . 41 . . Atlas-SNP BAG6 7917 hgsc.bcm.edu hg19 6 31610883 31610883 + Missense_Mutation SNP G G A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . BAG6 NM_004639 exon14 c.C1676T p.T559I CCTGGGGTCCCCT . 12.0 5.0 14.0 0.0 . 73 . . Atlas-SNP LFNG 3955 hgsc.bcm.edu hg19 7 2566469 2566469 + Splice_Site SNP G G T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . LFNG NM_001166355 exon8 c.775-1G>T . CCCACAGGTGACG . 65.0 4.0 86.0 0.0 . 57 . . Atlas-SNP FOCAD 54914 hgsc.bcm.edu hg19 9 20740268 20740268 + Silent SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . . NM_017794 exon7 c.C321T p.H107H TATGCACTTACTA . 226.0 53.0 232.0 0.0 . . . . Atlas-SNP PAX5 5079 hgsc.bcm.edu hg19 9 37002701 37002701 + Missense_Mutation SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . PAX5 NM_016734 exon5 c.G548A p.G183D AGGATGCCGCTGA . 132.0 6.0 182.0 0.0 . 250 . . Atlas-SNP KRAS 3845 hgsc.bcm.edu hg19 12 25380255 25380255 + Missense_Mutation SNP C C A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . KRAS NM_004985 exon3 c.G203T p.R68M TGGTCCCTCATTG . 151.0 34.0 144.0 0.0 . 30930 . . Atlas-SNP SYT16 83851 hgsc.bcm.edu hg19 14 62547559 62547559 + Missense_Mutation SNP A A G novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . SYT16 NM_031914 exon4 c.A1001G p.D334G AACAGGACAGGAC . 159.0 39.0 214.0 0.0 . 144 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94038399 94038399 + Missense_Mutation SNP A A T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . UNC79 NM_020818 exon15 c.A1384T p.N462Y CCAGATAATCAGT . 42.0 15.0 62.0 0.0 . 366 . . Atlas-SNP SNAI3 333929 hgsc.bcm.edu hg19 16 88747899 88747899 + Silent SNP G G T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . SNAI3 NM_178310 exon2 c.C300A p.A100A AATGGCGGCCCGG . 88.0 4.0 94.0 0.0 . 23 . . Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 7888162 7888162 + Silent SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . PTPRM NM_001105244 exon3 c.C255T p.L85L CCTGCTCTTACCC . 147.0 37.0 186.0 0.0 . 185 . . Atlas-SNP ZNF519 162655 hgsc.bcm.edu hg19 18 14105585 14105585 + Silent SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b ZNF519,NS,carcinoma,0,1 ZNF519 NM_145287 exon3 c.G954A p.K318K GAAAGGCTTCTCT . 78.0 4.0 64.0 0.0 . 53 . . Atlas-SNP ZNF426 79088 hgsc.bcm.edu hg19 19 9643591 9643591 + Missense_Mutation SNP G G C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b ZNF426,colon,carcinoma,0,1 ZNF426 NM_024106 exon6 c.C255G p.I85M TTTGATGATCTGA . 97.0 21.0 96.0 0.0 . 56 . . Atlas-SNP ZNF585A 199704 hgsc.bcm.edu hg19 19 37643714 37643714 + Missense_Mutation SNP A A C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ZNF585A NM_199126 exon6 c.T922G p.F308V AGGTAAAGGCCTT . 207.0 45.0 180.0 0.0 . 117 . . Atlas-SNP MAP3K10 4294 hgsc.bcm.edu hg19 19 40698304 40698304 + Silent SNP G G A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . MAP3K10 NM_002446 exon1 c.G366A p.V122V GGAGGTGGCAGTC . 31.0 14.0 38.0 0.0 . 70 . . Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657886 49657886 + Silent SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . HRC NM_002152 exon1 c.G609A p.E203E GGCCTCCTCTTCC . 353.0 19.0 294.0 0.0 . 85 . . Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657916 49657916 + Silent SNP T T C rs7409255 TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . HRC NM_002152 exon1 c.A579G p.E193E CTCCTCTTCTCCT . 287.0 43.0 284.0 0.0 . 85 . . Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657923 49657923 + Missense_Mutation SNP T T C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . HRC NM_002152 exon1 c.A572G p.E191G TCTCCTTCATCAT . 273.0 17.0 289.0 0.0 . 85 . . Atlas-SNP ZNF841 284371 hgsc.bcm.edu hg19 19 52569235 52569235 + Missense_Mutation SNP A A T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ZNF841 NM_001136499 exon7 c.T1900A p.F634I AACTGAAGACCTT . 220.0 20.0 199.0 0.0 . 183 . . Atlas-SNP ZNF83 55769 hgsc.bcm.edu hg19 19 53117500 53117500 + Silent SNP T T C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ZNF83 NM_018300 exon3 c.A318G p.L106L AAAATGTAAGCCT . 232.0 31.0 219.0 0.0 . 73 . . Atlas-SNP SYNJ1 8867 hgsc.bcm.edu hg19 21 34017978 34017978 + Silent SNP T T C rs368850131 TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . SYNJ1 NM_203446 exon25 c.A3486G p.P1162P TCTCTGTGGGGGA . 10.0 7.0 4.0 0.0 . 253 . . Atlas-SNP TMPRSS2 7113 hgsc.bcm.edu hg19 21 42851169 42851169 + Missense_Mutation SNP C C T novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . TMPRSS2 NM_001135099 exon7 c.G724A p.G242R TGGATCCGCTGTC . 90.0 4.0 82.0 0.0 . 148 . . Atlas-SNP ATP6 0 hgsc.bcm.edu hg19 MT 8533 8533 + Missense_Mutation SNP G G A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . . ENST00000361899 exon1 c.G7A p.E3K ATGAACGAAAATC . 58.0 4.0 23.0 0.0 . . . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13577 13577 + Missense_Mutation SNP T T C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . . ENST00000361567 exon1 c.T1241C p.I414T CTCTCATCGCTAC . 84.0 6.0 58.0 0.0 . . . . Atlas-SNP ND6 0 hgsc.bcm.edu hg19 MT 14226 14226 + Missense_Mutation SNP G G A novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . . ENST00000361681 exon1 c.C448T p.R150C ATCAACGCCCATA . 67.0 9.0 34.0 0.0 . . . . Atlas-SNP CYTB 0 hgsc.bcm.edu hg19 MT 15297 15297 + Missense_Mutation SNP T T C novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . . ENST00000361789 exon1 c.T551C p.I184T ACTTCATCTTGCC . 102.0 11.0 49.0 0.0 . . . . Atlas-SNP PIGQ 9091 hgsc.bcm.edu hg19 16 633549 633549 + Frame_Shift_Del DEL C C - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . PIGQ NM_148920 exon10 c.2197delA p.T733fs . . 112.0 19.0 93.0 0.0 . 43 . . Atlas-Indel,Pindel MUC5B 727897 hgsc.bcm.edu hg19 11 1263483 1263484 + Frame_Shift_Del DEL AG AG - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . MUC5B NM_002458 exon31 c.5372_5373del p.1791_1791del . . 234.0 42.0 290.0 0.0 . 473 . . Atlas-Indel,Pindel CPS1 1373 hgsc.bcm.edu hg19 2 211507320 211507322 + In_Frame_Del DEL TGA TGA - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 TGA TGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . CPS1 NM_001122633 exon26 c.3089_3091del p.1030_1031del . . 299.0 24.0 383.0 0.0 . 485 . . Atlas-Indel,Pindel CASP8 841 hgsc.bcm.edu hg19 2 202131436 202131437 + Frame_Shift_Ins INS - - AG novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . CASP8 NM_001080125 exon2 c.404_405insAG p.I135fs . . 154.0 31.0 150.0 0.0 . 272 . . Atlas-INDEL NEUROD1 4760 hgsc.bcm.edu hg19 2 182542873 182542885 + Frame_Shift_Del DEL CATGGGAGCTGTC CATGGGAGCTGTC - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 CATGGGAGCTGTC CATGGGAGCTGTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . NEUROD1 NM_002500 exon2 c.704_716del p.235_239del . . 99.0 10.0 142.0 0.0 . 67 . . Atlas-INDEL AFF1 4299 hgsc.bcm.edu hg19 4 88012960 88012963 + Frame_Shift_Del DEL AGTT AGTT - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 AGTT AGTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . AFF1 NM_001166693 exon7 c.1206_1209del p.402_403del . . 114.0 18.0 124.0 0.0 . 102 . . Atlas-Indel,Pindel ECE2 9718 hgsc.bcm.edu hg19 3 184002776 184002810 + Frame_Shift_Del DEL TTGAGTTCCTGTCTTTCTTGCTGTCACCATTGGAG TTGAGTTCCTGTCTTTCTTGCTGTCACCATTGGAG - novel TCGA-DD-A4NB-01A-12D-A25V-10 TCGA-DD-A4NB-11A-11D-A25V-10 TTGAGTTCCTGTCTTTCTTGCTGTCACCATTGGAG TTGAGTTCCTGTCTTTCTTGCTGTCACCATTGGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5d58b984-e0b8-4237-a576-0e9d4079599e 861ea9b6-f62f-4d03-9672-dc9f8ce2695b . ECE2 NM_014693 exon9 c.1384_1418del p.462_473del . . 326.0 22.0 475.0 0.0 . 303 . . Pindel