Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
IVL	3713	hgsc.bcm.edu	hg19	1	152883644	152883644	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IVL	NM_005547	exon2	c.G1371C	p.V457V	GCAGGTGGGGCAG	.	167.0	61.0	160.0	0.0	.	100	.	.	Atlas-SNP
THBS3	7059	hgsc.bcm.edu	hg19	1	155175006	155175006	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	THBS3	NM_007112	exon3	c.C388T	p.R130X	GACCTCGGAGTCG	.	146.0	59.0	176.0	0.0	.	70	.	.	Atlas-SNP
SUCO	51430	hgsc.bcm.edu	hg19	1	172571313	172571313	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_014283	exon21	c.A3128T	p.Y1043F	GAGATTATATTTC	.	81.0	28.0	70.0	0.0	.	.	.	.	Atlas-SNP
EML4	27436	hgsc.bcm.edu	hg19	2	42488346	42488346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	EML4	NM_019063	exon4	c.C424T	p.R142X	CAAATTCGAGCAT	.	54.0	9.0	37.0	0.0	.	92	.	.	Atlas-SNP
IL18R1	8809	hgsc.bcm.edu	hg19	2	103013028	103013028	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IL18R1	NM_003855	exon10	c.C1308T	p.S436S	GAAAAGCCGAAGA	.	97.0	5.0	64.0	0.0	.	72	.	.	Atlas-SNP
MYO7B	4648	hgsc.bcm.edu	hg19	2	128366325	128366325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MYO7B	NM_001080527	exon22	c.G2686A	p.A896T	CAAGGCGCTCTCC	.	146.0	48.0	149.0	0.0	.	359	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170029679	170029679	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LRP2	NM_004525	exon57	c.C11070T	p.Y3690Y	GCAGCGGTAATTT	.	185.0	70.0	167.0	0.0	.	751	.	.	Atlas-SNP
IDH1	3417	hgsc.bcm.edu	hg19	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	C	rs121913499	bycluster	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	IDH1,NS,haematopoietic_neoplasm,0,788	IDH1	NM_005896	exon4	c.C394G	p.R132G	CATGACGACCTAT	.	186.0	86.0	185.0	0.0	.	6310	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52440918	52440918	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	BAP1,colon,carcinoma,+1,1	BAP1	NM_004656	exon8	c.T586G	p.W196G	CCCCCCAGGGCCC	.	98.0	54.0	135.0	0.0	.	371	.	.	Atlas-SNP
TECRL	253017	hgsc.bcm.edu	hg19	4	65240925	65240925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TECRL	NM_001010874	exon2	c.C251A	p.T84N	TGAATAGTAGATG	.	92.0	4.0	71.0	0.0	.	106	.	.	Atlas-SNP
USP38	84640	hgsc.bcm.edu	hg19	4	144134995	144134995	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	USP38	NM_032557	exon9	c.T1866C	p.P622P	TTGTCCTTCCTCT	.	144.0	57.0	103.0	0.0	.	92	.	.	Atlas-SNP
DMGDH	29958	hgsc.bcm.edu	hg19	5	78322295	78322295	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	DMGDH	NM_013391	exon13	c.C2142T	p.A714A	ATTCATGGCATAG	.	278.0	100.0	241.0	0.0	.	88	.	.	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	hg19	5	135692416	135692416	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	TRPC7,NS,NS,0,2	TRPC7	NM_001167576	exon2	c.C660T	p.N220N	GTAGGCGTTCATG	.	238.0	103.0	235.0	1.0	.	126	.	.	Atlas-SNP
TLX3	30012	hgsc.bcm.edu	hg19	5	170736726	170736726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TLX3	NM_021025	exon1	c.C357A	p.S119R	CTCCAGCCTTGGC	.	32.0	10.0	61.0	0.0	.	23	.	.	Atlas-SNP
RPP40	10799	hgsc.bcm.edu	hg19	6	4996590	4996590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	RPP40	NM_006638	exon6	c.A624C	p.K208N	TGCTACTTTTGGC	.	125.0	49.0	94.0	0.0	.	36	.	.	Atlas-SNP
HLA-E	3133	hgsc.bcm.edu	hg19	6	30457628	30457628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HLA-E	NM_005516	exon2	c.C190A	p.P64T	GCGAGTCCGAGGA	.	47.0	14.0	96.0	0.0	.	35	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5353127	5353127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TNRC18	NM_001080495	exon27	c.C7395A	p.D2465E	CTCGTGGTCCAGT	.	69.0	4.0	92.0	0.0	.	311	.	.	Atlas-SNP
LRRD1	401387	hgsc.bcm.edu	hg19	7	91794266	91794266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LRRD1	NM_001161528	exon1	c.A251G	p.N84S	TGAAGATTTTTCT	.	136.0	15.0	82.0	0.0	.	35	.	.	Atlas-SNP
SKIDA1	387640	hgsc.bcm.edu	hg19	10	21806738	21806738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	NM_207371	exon4	c.A14T	p.K5M	CCTGACTTCAGGT	.	99.0	4.0	79.0	0.0	.	.	.	.	Atlas-SNP
RASSF4	83937	hgsc.bcm.edu	hg19	10	45486412	45486412	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	RASSF4	NM_032023	exon9	c.A702G	p.K234K	ATTAAAAGACTGC	.	41.0	15.0	35.0	0.0	.	33	.	.	Atlas-SNP
SAMD8	142891	hgsc.bcm.edu	hg19	10	76910777	76910777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	SAMD8_ENST00000372690,NS,carcinoma,0,2	SAMD8	NM_144660	exon2	c.G491T	p.G164V	TATTTGGATTTAC	.	111.0	43.0	147.0	1.0	.	57	.	.	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	hg19	11	117263284	117263284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	CEP164	NM_001271933	exon18	c.G2443T	p.G815W	TGCCTTGGGCAAG	.	143.0	45.0	100.0	0.0	.	121	.	.	Atlas-SNP
IRAK4	51135	hgsc.bcm.edu	hg19	12	44176211	44176211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	IRAK4	NM_016123	exon9	c.T1043C	p.I348T	GCAGAATTGTGGG	.	89.0	37.0	76.0	0.0	.	77	.	.	Atlas-SNP
CCDC154	645811	hgsc.bcm.edu	hg19	16	1486065	1486065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	CCDC154	NM_001143980	exon14	c.C1510T	p.R504W	CCTGCCGCAGGGC	.	77.0	5.0	78.0	0.0	.	27	.	.	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	hg19	16	2327903	2327903	+	Missense_Mutation	SNP	G	G	A	rs368905104		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	ABCA3	NM_001089	exon31	c.C4886T	p.A1629V	ACGAAGGCCTTGA	.	32.0	13.0	34.0	0.0	.	176	.	.	Atlas-SNP
C16orf96	342346	hgsc.bcm.edu	hg19	16	4606689	4606689	+	Missense_Mutation	SNP	G	G	A	rs367941862		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	C16orf96	NM_001145011	exon1	c.G199A	p.A67T	GGAGACGCCCAGC	.	132.0	15.0	156.0	0.0	.	28	.	.	Atlas-SNP
MAPK7	5598	hgsc.bcm.edu	hg19	17	19285247	19285247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	MAPK7	NM_002749	exon5	c.G1631A	p.G544E	AACGGGGGGCTGG	.	16.0	12.0	27.0	0.0	.	72	.	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	hg19	17	71437017	71437017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SDK2	NM_001144952	exon6	c.C659T	p.P220L	TTAGGTGGGATGA	.	217.0	63.0	175.0	0.0	.	219	.	.	Atlas-SNP
S1PR4	8698	hgsc.bcm.edu	hg19	19	3179635	3179635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	S1PR4	NM_003775	exon1	c.C845A	p.A282D	TCTGGGCCCAGGA	.	56.0	31.0	93.0	0.0	.	31	.	.	Atlas-SNP
LHB	3972	hgsc.bcm.edu	hg19	19	49519408	49519408	+	Missense_Mutation	SNP	G	G	C	rs201749590	by1000genomes;alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	LHB	NM_000894	exon3	c.C343G	p.R115G	TGCTGCGGCGGCA	.	54.0	21.0	70.0	0.0	.	20	.	G|1.000;A|0.000	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HRC	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	276.0	13.0	190.0	0.0	.	85	.	.	Atlas-SNP
SDCBP2	27111	hgsc.bcm.edu	hg19	20	1299029	1299029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	SDCBP2	NM_080489	exon4	c.A158T	p.Y53F	CCCATATAATTTT	.	58.0	20.0	66.0	0.0	.	78	.	.	Atlas-SNP
TRPM2	7226	hgsc.bcm.edu	hg19	21	45810827	45810827	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	TRPM2	NM_003307	exon10	c.C1359G	p.D453E	CTGGGACCACCAG	.	132.0	53.0	106.0	0.0	.	196	.	.	Atlas-SNP
MED15	51586	hgsc.bcm.edu	hg19	22	20939289	20939289	+	Missense_Mutation	SNP	G	G	T	rs147995933	alternate_allele	TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	PCQAP,bladder,carcinoma,0,2	MED15	NM_001003891	exon15	c.G1951T	p.G651C	ATTCACGGCCCAC	.	75.0	4.0	78.0	0.0	.	68	.	G|1.000;A|0.000	Atlas-SNP
HCCS	3052	hgsc.bcm.edu	hg19	X	11139831	11139831	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	HCCS	NM_001122608	exon7	c.G708A	p.K236K	CAACAAGGACTAC	.	205.0	70.0	226.0	0.0	.	17	.	.	Atlas-SNP
GEMIN8	54960	hgsc.bcm.edu	hg19	X	14027050	14027050	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	GEMIN8	NM_017856	exon5	c.C711T	p.V237V	GGGGATGACCGGC	.	233.0	83.0	257.0	0.0	.	19	.	.	Atlas-SNP
DCAF8L2	347442	hgsc.bcm.edu	hg19	X	27765399	27765399	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	DCAF8L2	NM_001136533	exon1	c.A387G	p.E129E	GGAGGAAGAGGAG	.	70.0	12.0	39.0	0.0	.	79	.	.	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	7722	7722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	.	ENST00000361739	exon1	c.T137C	p.L46P	TAACACTCACAAC	.	10.0	10.0	30.0	0.0	.	.	.	.	Atlas-SNP
THBS3	7059	hgsc.bcm.edu	hg19	1	155170766	155170766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	.	THBS3	NM_007112	exon13	c.1471delC	p.Q491fs	.	.	306.0	107.0	240.0	0.0	.	70	.	.	Atlas-Indel,Pindel
PDE7B	27115	hgsc.bcm.edu	hg19	6	136268612	136268612	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NA-01A-11D-A25V-10	TCGA-DD-A4NA-11A-11D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5ead73fe-1c34-48ed-b20d-89fc3c82dbd6	85fa6efb-2977-466f-b260-4e95585f2e37	PDE7B,NS,carcinoma,0,3	PDE7B	NM_018945	exon2	c.31delG	p.E11fs	.	.	80.0	56.0	127.0	0.0	.	55	.	.	Atlas-Indel,Pindel