Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PRAMEF2 65122 hgsc.bcm.edu hg19 1 12919960 12919960 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PRAMEF2 NM_023014 exon3 c.C700T p.L234F AAGACTCTTTGCA . 145.0 32.0 171.0 0.0 . 85 . . Atlas-SNP FHAD1 114827 hgsc.bcm.edu hg19 1 15684641 15684641 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FHAD1 NM_052929 exon20 c.A2532T p.L844F CGTTTTAAATAAT . 64.0 13.0 134.0 0.0 . 78 . . Atlas-SNP CDA 978 hgsc.bcm.edu hg19 1 20940334 20940334 + Splice_Site SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CDA NM_001785 exon3 c.267-1G>A . TCCCCAGTGACAT . 104.0 20.0 137.0 0.0 . 19 . . Atlas-SNP HTR1D 3352 hgsc.bcm.edu hg19 1 23519871 23519871 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . HTR1D NM_000864 exon1 c.T842A p.L281H TCAGCAAGCTTGA . 61.0 14.0 96.0 0.0 . 36 . . Atlas-SNP C1orf63 57035 hgsc.bcm.edu hg19 1 25570119 25570119 + Silent SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . C1orf63 NM_020317 exon4 c.G678T p.S226S CTTTTCCGACAGC . 108.0 5.0 175.0 0.0 . 17 . . Atlas-SNP HMGB4 127540 hgsc.bcm.edu hg19 1 34330001 34330001 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb HMGB4,NS,malignant_melanoma,0,1 HMGB4 NM_145205 exon2 c.G209A p.R70Q AAGCCCGATACCA . 89.0 18.0 119.0 0.0 . 27 . . Atlas-SNP C1orf94 84970 hgsc.bcm.edu hg19 1 34667800 34667800 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . C1orf94 NM_001134734 exon4 c.C1386T p.L462L CTGGCTCAACCTG . 215.0 47.0 293.0 0.0 . 156 . . Atlas-SNP GNL2 29889 hgsc.bcm.edu hg19 1 38033329 38033329 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GNL2 NM_013285 exon15 c.G1988A p.R663K TCTTCCCTTTGTG . 115.0 24.0 142.0 0.0 . 58 . . Atlas-SNP C1orf228 339541 hgsc.bcm.edu hg19 1 45163762 45163762 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . C1orf228 NM_001145636 exon4 c.G303A p.E101E TCTTGAGGTTGGA . 99.0 18.0 138.0 0.0 . 15 . . Atlas-SNP LEPR 3953 hgsc.bcm.edu hg19 1 66102182 66102182 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . LEPR NM_002303 exon20 c.A2982G p.K994K CTCTAAACCAAGT . 36.0 7.0 56.0 0.0 . 284 . . Atlas-SNP MIER1 57708 hgsc.bcm.edu hg19 1 67436586 67436586 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MIER1 NM_001077700 exon9 c.G868A p.D290N ACAGGTGATGAGA . 77.0 5.0 136.0 0.0 . 86 . . Atlas-SNP ZNHIT6 54680 hgsc.bcm.edu hg19 1 86123530 86123530 + Missense_Mutation SNP C C A rs139368369 TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZNHIT6 NM_017953 exon9 c.G1372T p.V458L ACTTACCTTGGTG . 54.0 13.0 55.0 0.0 . 42 . C|1.000;A|0.000 Atlas-SNP RPAP2 79871 hgsc.bcm.edu hg19 1 92789745 92789745 + Nonsense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RPAP2 NM_024813 exon8 c.G1268A p.W423X CTGCCTGGAGGGA . 80.0 21.0 110.0 0.0 . 48 . . Atlas-SNP SPAG17 200162 hgsc.bcm.edu hg19 1 118558673 118558673 + Missense_Mutation SNP T T G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SPAG17 NM_206996 exon29 c.A4202C p.N1401T ATCCGATTTCCTT . 218.0 49.0 320.0 0.0 . 263 . . Atlas-SNP PDE4DIP 9659 hgsc.bcm.edu hg19 1 144931551 144931551 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PDE4DIP NM_001002811 exon1 c.A158G p.K53R GCACACTTGCTGC . 267.0 13.0 240.0 0.0 . 817 . . Atlas-SNP PRKAB2 5565 hgsc.bcm.edu hg19 1 146634090 146634090 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb PRKAB2,mouth,carcinoma,0,1 PRKAB2 NM_005399 exon6 c.A601G p.R201G TGAATCTTTCCTC . 143.0 14.0 104.0 0.0 . 26 . . Atlas-SNP VPS45 11311 hgsc.bcm.edu hg19 1 150054035 150054035 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . VPS45 NM_007259 exon9 c.A892G p.K298E AAGAAGAAACCAA . 205.0 14.0 129.0 0.0 . 47 . . Atlas-SNP SETDB1 9869 hgsc.bcm.edu hg19 1 150915464 150915464 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SETDB1 NM_012432 exon7 c.T810C p.D270D CAAAGATGGGAAT . 384.0 37.0 210.0 0.0 . 204 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152286777 152286777 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FLG NM_002016 exon3 c.C585T p.D195D CCTATTGTCTCCT . 282.0 31.0 143.0 0.0 . 900 . . Atlas-SNP FLG2 388698 hgsc.bcm.edu hg19 1 152327323 152327323 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FLG2 NM_001014342 exon3 c.G2939C p.G980A CCTGAGCCTGACT . 520.0 40.0 300.0 0.0 . 431 . . Atlas-SNP LCE1B 353132 hgsc.bcm.edu hg19 1 152785131 152785131 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . LCE1B NM_178349 exon1 c.C209T p.S70F GCAGTTCTGGGGG . 98.0 4.0 72.0 0.0 . 45 . . Atlas-SNP NPR1 4881 hgsc.bcm.edu hg19 1 153653162 153653162 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb NPR1,caecum,carcinoma,0,1 NPR1 NM_000906 exon2 c.C907T p.R303C AGTGCCCGCCAGG . 91.0 19.0 44.0 0.0 . 104 . . Atlas-SNP CHRNB2 1141 hgsc.bcm.edu hg19 1 154543704 154543704 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CHRNB2 NM_000748 exon5 c.C405T p.A135A CAATGCCGTGGTC . 240.0 26.0 152.0 0.0 . 74 . . Atlas-SNP KRTCAP2 200185 hgsc.bcm.edu hg19 1 155145067 155145067 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KRTCAP2 NM_173852 exon3 c.G275T p.G92V TGGAATCCTTTGC . 282.0 16.0 157.0 0.0 . 15 . . Atlas-SNP NES 10763 hgsc.bcm.edu hg19 1 156639411 156639411 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NES NM_006617 exon4 c.G4569A p.M1523I ATCCTCCATCCCA . 297.0 60.0 133.0 0.0 . 196 . . Atlas-SNP NES 10763 hgsc.bcm.edu hg19 1 156641300 156641300 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NES NM_006617 exon4 c.T2680A p.S894T CCAGAGATCTCAA . 204.0 17.0 129.0 0.0 . 196 . . Atlas-SNP OR10T2 128360 hgsc.bcm.edu hg19 1 158368322 158368322 + Missense_Mutation SNP T T G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OR10T2 NM_001004475 exon1 c.A935C p.K312T CTCATCTTGGTTG . 94.0 12.0 57.0 0.0 . 76 . . Atlas-SNP IGSF9 57549 hgsc.bcm.edu hg19 1 159901621 159901621 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . IGSF9 NM_001135050 exon11 c.C1343T p.P448L ACAACAGGAGGAG . 113.0 9.0 50.0 0.0 . 123 . . Atlas-SNP ATP1A4 480 hgsc.bcm.edu hg19 1 160141549 160141549 + Splice_Site SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ATP1A4 NM_144699 exon12 c.1854+2T>C . TTAAGGTAAATAC . 96.0 12.0 42.0 0.0 . 167 . . Atlas-SNP DNM3 26052 hgsc.bcm.edu hg19 1 172357765 172357765 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . DNM3 NM_015569 exon20 c.C2338G p.L780V GCTCCCCTCGCAA . 126.0 11.0 67.0 0.0 . 85 . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179659883 179659883 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TDRD5 NM_001199085 exon18 c.T2913C p.A971A CCGTGCTATTACA . 148.0 12.0 70.0 0.0 . 149 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181706682 181706682 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CACNA1E NM_001205293 exon23 c.C3444T p.Y1148Y CCACTACATCGTG . 259.0 28.0 173.0 0.0 . 778 . . Atlas-SNP RGSL1 353299 hgsc.bcm.edu hg19 1 182442708 182442708 + Splice_Site SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RGSL1 NM_001137669 exon6 c.464-2A>G . ATTTCCAGAGTCC . 132.0 19.0 61.0 0.0 . 111 . . Atlas-SNP RGS8 85397 hgsc.bcm.edu hg19 1 182617399 182617399 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RGS8 NM_033345 exon5 c.T287C p.F96S TCACTGAACTCCG . 223.0 20.0 121.0 0.0 . 51 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186099815 186099815 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . HMCN1 NM_031935 exon85 c.A13216T p.I4406F CTGGCCATCTATG . 93.0 11.0 51.0 0.0 . 797 . . Atlas-SNP PDC 5132 hgsc.bcm.edu hg19 1 186413279 186413279 + Silent SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PDC NM_002597 exon4 c.C573A p.I191I TTTATAGATGAGC . 164.0 13.0 92.0 0.0 . 15 . . Atlas-SNP CRB1 23418 hgsc.bcm.edu hg19 1 197403858 197403858 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CRB1 NM_201253 exon9 c.T2865A p.N955K TTTTAATGGACAA . 181.0 15.0 122.0 0.0 . 284 . . Atlas-SNP NAV1 89796 hgsc.bcm.edu hg19 1 201757647 201757647 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NAV1 NM_020443 exon10 c.C3047T p.P1016L GCATCCCCACCCA . 250.0 14.0 146.0 0.0 . 143 . . Atlas-SNP C1orf116 79098 hgsc.bcm.edu hg19 1 207198319 207198319 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . C1orf116 NM_023938 exon3 c.G196A p.D66N CGCTGTCAGCCTC . 177.0 8.0 87.0 0.0 . 64 . . Atlas-SNP KCNH1 3756 hgsc.bcm.edu hg19 1 211093070 211093070 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KCNH1 NM_172362 exon7 c.G1374T p.M458I GCTGGTCATTGTG . 460.0 23.0 247.0 0.0 . 199 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216172333 216172333 + Missense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . USH2A NM_206933 exon34 c.C6553A p.H2185N AATCATGTGTATG . 227.0 22.0 115.0 0.0 . 1168 . . Atlas-SNP ESRRG 2104 hgsc.bcm.edu hg19 1 216850694 216850694 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ESRRG NM_001243518 exon3 c.G211A p.G71R AGCTCCCACTGGC . 658.0 57.0 387.0 0.0 . 111 . . Atlas-SNP RAB3GAP2 25782 hgsc.bcm.edu hg19 1 220387288 220387288 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RAB3GAP2 NM_012414 exon3 c.A214G p.T72A AGGAAGTTTTTTG . 282.0 32.0 147.0 0.0 . 120 . . Atlas-SNP MIA3 375056 hgsc.bcm.edu hg19 1 222822189 222822189 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MIA3 NM_198551 exon8 c.C3628T p.Q1210X GTATATCAAGGTA . 68.0 11.0 52.0 0.0 . 167 . . Atlas-SNP C1orf65 164127 hgsc.bcm.edu hg19 1 223567373 223567373 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . C1orf65 NM_152610 exon1 c.T556A p.S186T TCCCCTTCCTCAG . 475.0 50.0 244.0 0.0 . 71 . . Atlas-SNP GNPAT 8443 hgsc.bcm.edu hg19 1 231411879 231411879 + Splice_Site SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GNPAT NM_014236 exon15 c.1938-2A>G . TCTCCTAGAAATA . 345.0 33.0 201.0 0.0 . 73 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237713919 237713919 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RYR2 NM_001035 exon27 c.G3142A p.D1048N AACAAGGACAGCC . 358.0 50.0 180.0 0.0 . 1273 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237982484 237982484 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RYR2 NM_001035 exon101 c.T14582C p.I4861T TGGCCATAATACA . 206.0 12.0 122.0 0.0 . 1273 . . Atlas-SNP RGS7 6000 hgsc.bcm.edu hg19 1 240966242 240966242 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RGS7 NM_002924 exon16 c.T1321A p.S441T CACTGGATCTTAT . 136.0 10.0 76.0 0.0 . 308 . . Atlas-SNP OR2L2 26246 hgsc.bcm.edu hg19 1 248202311 248202311 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OR2L2 NM_001004686 exon1 c.T742C p.S248P GTAGTGTCCTTCT . 471.0 44.0 230.0 0.0 . 115 . . Atlas-SNP OR2T1 26696 hgsc.bcm.edu hg19 1 248569623 248569623 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OR2T1 NM_030904 exon1 c.T328A p.Y110N CCCATGTACTTCC . 337.0 34.0 180.0 0.0 . 89 . . Atlas-SNP OR2G6 391211 hgsc.bcm.edu hg19 1 248685435 248685435 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OR2G6 NM_001013355 exon1 c.C488A p.T163N CCCTCACTGTGCA . 448.0 36.0 234.0 0.0 . 124 . . Atlas-SNP OR2T34 127068 hgsc.bcm.edu hg19 1 248737675 248737675 + Nonsense_Mutation SNP A A C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OR2T34 NM_001001821 exon1 c.T384G p.Y128X AGCAGCATATCGG . 1219.0 94.0 651.0 0.0 . 72 . . Atlas-SNP NBAS 51594 hgsc.bcm.edu hg19 2 15307372 15307372 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NBAS NM_015909 exon52 c.A6916T p.T2306S AGGGAGTGGAGAC . 213.0 23.0 180.0 0.0 . 246 . . Atlas-SNP KCNS3 3790 hgsc.bcm.edu hg19 2 18112349 18112349 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KCNS3 NM_002252 exon3 c.A74G p.K25R GCTTTAAGCAGTC . 365.0 128.0 273.0 0.0 . 85 . . Atlas-SNP KLHL29 114818 hgsc.bcm.edu hg19 2 23918908 23918908 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KLHL29 NM_052920 exon10 c.C1829T p.P610L GGAACCCGCAGAA . 118.0 34.0 135.0 0.0 . 47 . . Atlas-SNP GALNT14 79623 hgsc.bcm.edu hg19 2 31178813 31178813 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GALNT14 NM_001253826 exon6 c.C512T p.P171L ACCTTGGGCAACT . 215.0 59.0 160.0 0.0 . 103 . . Atlas-SNP LHCGR 3973 hgsc.bcm.edu hg19 2 48915238 48915238 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb LHCGR,NS,carcinoma,0,1 LHCGR NM_000233 exon11 c.G1698A p.K566K AGCAATCTTTGTA . 169.0 19.0 151.0 0.0 . 154 . . Atlas-SNP EFEMP1 2202 hgsc.bcm.edu hg19 2 56108782 56108782 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb EFEMP1,caecum,carcinoma,0,1 EFEMP1 NM_001039349 exon5 c.C605T p.P202L CCAGGAGGGCACT . 220.0 47.0 181.0 0.0 . 81 . . Atlas-SNP CCDC142 84865 hgsc.bcm.edu hg19 2 74707914 74707914 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CCDC142 NM_032779 exon5 c.G1464A p.K488K AGTCAGCTTCTGG . 251.0 24.0 205.0 0.0 . 40 . . Atlas-SNP TACR1 6869 hgsc.bcm.edu hg19 2 75278382 75278382 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb TACR1,NS,carcinoma,0,1 TACR1 NM_001058 exon4 c.G928A p.D310N ACCTGTCATTGAG . 383.0 106.0 361.0 1.0 . 62 . . Atlas-SNP AFF3 3899 hgsc.bcm.edu hg19 2 100194857 100194857 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . AFF3 NM_001025108 exon17 c.G2925A p.T975T CGGCTTCGTCTGC . 204.0 66.0 135.0 0.0 . 164 . . Atlas-SNP IL1RL1 9173 hgsc.bcm.edu hg19 2 102968228 102968228 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . IL1RL1 NM_016232 exon11 c.A1518G p.V506V GAAAGTACAGGGG . 213.0 37.0 176.0 0.0 . 114 . . Atlas-SNP SLC9A4 389015 hgsc.bcm.edu hg19 2 103090418 103090418 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SLC9A4 NM_001011552 exon1 c.T200C p.V67A ACTATGTGCAAAT . 164.0 48.0 141.0 0.0 . 115 . . Atlas-SNP SLC9A4 389015 hgsc.bcm.edu hg19 2 103124608 103124608 + Silent SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SLC9A4 NM_001011552 exon5 c.C1269A p.I423I GTGCATCATTTTC . 414.0 60.0 358.0 0.0 . 115 . . Atlas-SNP SLC9A2 6549 hgsc.bcm.edu hg19 2 103300730 103300730 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SLC9A2 NM_003048 exon5 c.T1360C p.F454L GCTGTGTTTCCTC . 427.0 102.0 347.0 0.0 . 112 . . Atlas-SNP RGPD4 285190 hgsc.bcm.edu hg19 2 108489237 108489237 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb RGPD4,NS,carcinoma,0,1 RGPD4 NM_182588 exon20 c.T4777A p.S1593T AGTGGATCTGAAA . 173.0 26.0 152.0 0.0 . 112 . . Atlas-SNP KCNH7 90134 hgsc.bcm.edu hg19 2 163361023 163361023 + Missense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KCNH7 NM_033272 exon6 c.C1058A p.S353Y TCTGAAGAAGGAG . 228.0 47.0 178.0 0.0 . 378 . . Atlas-SNP COBLL1 22837 hgsc.bcm.edu hg19 2 165548775 165548775 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . COBLL1 NM_014900 exon13 c.C3370T p.L1124L CAGTCAGCAAACT . 169.0 56.0 150.0 0.0 . 122 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179569674 179569674 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TTN NM_001267550 exon104 c.G29624T p.R9875M TCTGACCTCTCTA . 258.0 34.0 183.0 0.0 . 18412 . . Atlas-SNP COL5A2 1290 hgsc.bcm.edu hg19 2 189901361 189901361 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . COL5A2 NM_000393 exon52 c.A4094T p.D1365V TTCATATCAAGAC . 100.0 20.0 73.0 0.0 . 230 . . Atlas-SNP STAT4 6775 hgsc.bcm.edu hg19 2 191898231 191898231 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . STAT4 NM_001243835 exon20 c.G1837A p.D613N AATGGTCCACCCA . 128.0 36.0 92.0 0.0 . 85 . . Atlas-SNP CCDC150 284992 hgsc.bcm.edu hg19 2 197521532 197521532 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CCDC150 NM_001080539 exon3 c.A352T p.I118F ATGAACATCTTTC . 98.0 26.0 62.0 0.0 . 96 . . Atlas-SNP BMPR2 659 hgsc.bcm.edu hg19 2 203332240 203332240 + Splice_Site SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . BMPR2 NM_001204 exon3 c.248-2A>G . ATTTATAGGATGT . 115.0 47.0 85.0 0.0 . 142 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210786230 210786230 + Missense_Mutation SNP T T G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . UNC80 NM_032504 exon33 c.T5152G p.F1718V AAATCCTTTTCAG . 146.0 17.0 110.0 0.0 . 280 . . Atlas-SNP IKZF2 22807 hgsc.bcm.edu hg19 2 213872617 213872617 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . IKZF2 NM_016260 exon8 c.G1048C p.V350L TTATAACTGGGGC . 193.0 41.0 155.0 0.0 . 71 . . Atlas-SNP RUFY4 285180 hgsc.bcm.edu hg19 2 218947924 218947924 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RUFY4 NM_198483 exon11 c.G1447A p.G483R GAGCTTGGAGGGC . 264.0 69.0 202.0 0.0 . 59 . . Atlas-SNP TUBA4A 7277 hgsc.bcm.edu hg19 2 220116022 220116022 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TUBA4A NM_006000 exon4 c.G399C p.Q133H GAAGCCCTGAAGT . 111.0 10.0 84.0 0.0 . 96 . . Atlas-SNP GIGYF2 26058 hgsc.bcm.edu hg19 2 233710580 233710580 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GIGYF2 NM_001103147 exon28 c.G3507A p.T1169T TAATACGGCAAAT . 171.0 26.0 94.0 0.0 . 288 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238274558 238274558 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . COL6A3 NM_004369 exon12 c.G5621C p.R1874T CTGACCCTGTGCA . 61.0 17.0 46.0 0.0 . 608 . . Atlas-SNP SCLY 51540 hgsc.bcm.edu hg19 2 238990418 238990418 + Missense_Mutation SNP C C A rs140009501 alternate_allele TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SCLY NM_016510 exon5 c.C577A p.R193S GCAGTCCGCCCGA . 139.0 30.0 101.0 0.0 . 51 . C|1.000;T|0.000 Atlas-SNP GRM7 2917 hgsc.bcm.edu hg19 3 7620822 7620822 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GRM7 NM_000844 exon8 c.C2229T p.A743A GCAAGCCAGAGGG . 192.0 44.0 225.0 0.0 . 223 . . Atlas-SNP BRPF1 7862 hgsc.bcm.edu hg19 3 9776289 9776289 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . BRPF1 NM_001003694 exon2 c.G465A p.E155E CAAGGAGAAGCGC . 215.0 37.0 245.0 0.0 . 104 . . Atlas-SNP LRRC3B 116135 hgsc.bcm.edu hg19 3 26751290 26751290 + Missense_Mutation SNP T T G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . LRRC3B NM_052953 exon2 c.T127G p.S43A TCTTCCTCTGGGG . 150.0 36.0 177.0 0.0 . 51 . . Atlas-SNP DUSP7 1849 hgsc.bcm.edu hg19 3 52084943 52084943 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb DUSP7,NS,carcinoma,0,1 DUSP7 NM_001947 exon3 c.G1148A p.R383Q AGCGTCCGCTCAA . 234.0 47.0 304.0 0.0 . 34 . . Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52441334 52441334 + Splice_Site SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb .,1 BAP1 NM_004656 exon8 c.438-2A>T . CGGGCCTGGGGAA . 98.0 60.0 106.0 0.0 . 371 . . Atlas-SNP CADPS 8618 hgsc.bcm.edu hg19 3 62522190 62522190 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CADPS NM_003716 exon12 c.A2033T p.H678L GAAGCGTGGTCAA . 135.0 62.0 211.0 0.0 . 387 . . Atlas-SNP CADPS 8618 hgsc.bcm.edu hg19 3 62522191 62522191 + Missense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CADPS NM_003716 exon12 c.C2032A p.H678N AAGCGTGGTCAAA . 135.0 62.0 210.0 0.0 . 387 . . Atlas-SNP ADAMTS9 56999 hgsc.bcm.edu hg19 3 64640083 64640083 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ADAMTS9 NM_182920 exon8 c.G1262A p.S421N TCTTCACTAATAG . 176.0 31.0 192.0 0.0 . 206 . . Atlas-SNP HTR1F 3355 hgsc.bcm.edu hg19 3 88040703 88040703 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . HTR1F NM_000866 exon2 c.C804T p.L268L AAGTCTCAGGTCT . 50.0 8.0 59.0 0.0 . 66 . . Atlas-SNP STX19 415117 hgsc.bcm.edu hg19 3 93733261 93733261 + Missense_Mutation SNP A A C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . STX19 NM_001001850 exon2 c.T853G p.C285G ACCAACAACACAG . 62.0 4.0 46.0 0.0 . 19 . . Atlas-SNP MYH15 22989 hgsc.bcm.edu hg19 3 108178291 108178291 + Missense_Mutation SNP G G T rs372985354 alternate_allele TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MYH15 NM_014981 exon19 c.C1998A p.N666K ATTCAGGTTTTCC . 71.0 6.0 61.0 0.0 . 223 . . Atlas-SNP MORC1 27136 hgsc.bcm.edu hg19 3 108833252 108833252 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MORC1 NM_014429 exon2 c.C98T p.A33V AATTCAGCCAGTG . 93.0 12.0 109.0 0.0 . 211 . . Atlas-SNP KIAA1407 57577 hgsc.bcm.edu hg19 3 113720448 113720448 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KIAA1407 NM_020817 exon13 c.G2157T p.K719N CATTTTCTTCAGT . 330.0 45.0 323.0 0.0 . 80 . . Atlas-SNP C3orf30 152405 hgsc.bcm.edu hg19 3 118867060 118867060 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . C3orf30 NM_152539 exon2 c.T1432C p.Y478H AAGGGTTATCATA . 134.0 18.0 98.0 0.0 . 64 . . Atlas-SNP DNAJB8 165721 hgsc.bcm.edu hg19 3 128181553 128181553 + Missense_Mutation SNP A A C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . DNAJB8 NM_153330 exon3 c.T536G p.F179C GACTTGAACCCCG . 171.0 22.0 136.0 0.0 . 34 . . Atlas-SNP CEP70 80321 hgsc.bcm.edu hg19 3 138256157 138256157 + Silent SNP C C A rs372060625 alternate_allele TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb CEP70,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 CEP70 NM_024491 exon7 c.G498T p.T166T TTGCTCCGTTCGT . 92.0 8.0 97.0 0.0 . 51 . . Atlas-SNP GRK7 131890 hgsc.bcm.edu hg19 3 141497352 141497352 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GRK7 NM_139209 exon1 c.A226T p.T76S CTAGCCACAGTGC . 82.0 11.0 97.0 0.0 . 65 . . Atlas-SNP IGSF10 285313 hgsc.bcm.edu hg19 3 151161336 151161336 + Missense_Mutation SNP G G T rs367812916 alternate_allele TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . IGSF10 NM_178822 exon5 c.C5399A p.T1800K TCAACCGTCACCA . 348.0 58.0 357.0 0.0 . 279 . . Atlas-SNP SLC33A1 9197 hgsc.bcm.edu hg19 3 155571758 155571758 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SLC33A1 NM_004733 exon1 c.G29A p.S10N CGGCTGCTGTCCT . 177.0 79.0 188.0 0.0 . 57 . . Atlas-SNP FNDC3B 64778 hgsc.bcm.edu hg19 3 172048416 172048416 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FNDC3B NM_001135095 exon13 c.A1465T p.T489S GGCATCACATGGG . 218.0 38.0 197.0 0.0 . 118 . . Atlas-SNP GNB4 59345 hgsc.bcm.edu hg19 3 179119095 179119095 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GNB4 NM_021629 exon10 c.G929C p.G310A TCATGACCAGCAA . 228.0 31.0 241.0 0.0 . 37 . . Atlas-SNP MCCC1 56922 hgsc.bcm.edu hg19 3 182788806 182788806 + Nonsense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MCCC1 NM_020166 exon7 c.A742T p.K248X CAAACTTCTCGAT . 181.0 26.0 150.0 0.0 . 87 . . Atlas-SNP ZNF518B 85460 hgsc.bcm.edu hg19 4 10445461 10445461 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZNF518B NM_053042 exon3 c.G2492A p.G831E ATTGGCCCCCTTT . 136.0 27.0 127.0 0.0 . 116 . . Atlas-SNP FAM114A1 92689 hgsc.bcm.edu hg19 4 38910313 38910313 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FAM114A1 NM_138389 exon7 c.A758G p.K253R GGACCAAGACGCT . 147.0 22.0 141.0 0.0 . 42 . . Atlas-SNP GABRA4 2557 hgsc.bcm.edu hg19 4 46967002 46967002 + Silent SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GABRA4 NM_000809 exon8 c.T1119A p.P373P GGCTTCAGGATGC . 115.0 12.0 128.0 0.0 . 129 . . Atlas-SNP FRYL 285527 hgsc.bcm.edu hg19 4 48607809 48607809 + Silent SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FRYL NM_015030 exon11 c.A783T p.I261I ATGTTTTATATCT . 142.0 32.0 149.0 0.0 . 242 . . Atlas-SNP LPHN3 23284 hgsc.bcm.edu hg19 4 62800605 62800605 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . LPHN3 NM_015236 exon11 c.T1956A p.N652K TTTGAATGCATGG . 238.0 65.0 210.0 0.0 . 800 . . Atlas-SNP ARHGAP24 83478 hgsc.bcm.edu hg19 4 86852134 86852134 + Silent SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ARHGAP24 NM_031305 exon1 c.A51T p.S17S AGCCTCAACTCCT . 96.0 21.0 159.0 0.0 . 116 . . Atlas-SNP SEC24B 10427 hgsc.bcm.edu hg19 4 110442311 110442311 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SEC24B NM_006323 exon13 c.C2284T p.L762L GTGAATCTATATG . 62.0 13.0 112.0 0.0 . 186 . . Atlas-SNP USP53 54532 hgsc.bcm.edu hg19 4 120192951 120192951 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . USP53 NM_019050 exon15 c.A1936T p.M646L GATGAAATGAAGC . 101.0 16.0 132.0 0.0 . 69 . . Atlas-SNP GRIA2 2891 hgsc.bcm.edu hg19 4 158257592 158257592 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GRIA2 NM_000826 exon11 c.T1537A p.S513T GACTTCTCAAAGC . 144.0 45.0 164.0 0.0 . 358 . . Atlas-SNP NAF1 92345 hgsc.bcm.edu hg19 4 164061471 164061471 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NAF1 NM_138386 exon5 c.A782G p.H261R TCAATGTGATCTG . 55.0 10.0 52.0 0.0 . 69 . . Atlas-SNP TLL1 7092 hgsc.bcm.edu hg19 4 166976353 166976353 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TLL1 NM_012464 exon13 c.T1650C p.N550N CTCCAATACTTTG . 69.0 14.0 112.0 0.0 . 194 . . Atlas-SNP ASB5 140458 hgsc.bcm.edu hg19 4 177190077 177190077 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ASB5 NM_080874 exon1 c.A183G p.V61V TTGGGTTACTCCA . 91.0 14.0 120.0 0.0 . 88 . . Atlas-SNP CCDC110 256309 hgsc.bcm.edu hg19 4 186366663 186366663 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CCDC110 NM_152775 exon7 c.A2495T p.H832L TAATGATGCTTGA . 31.0 7.0 33.0 0.0 . 78 . . Atlas-SNP MTNR1A 4543 hgsc.bcm.edu hg19 4 187455096 187455096 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MTNR1A NM_005958 exon2 c.G800A p.S267N ACCATGCTGGCGG . 129.0 32.0 113.0 0.0 . 46 . . Atlas-SNP ADCY2 108 hgsc.bcm.edu hg19 5 7743819 7743819 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ADCY2 NM_020546 exon15 c.T1910C p.L637P CGTTTCTCTTGCT . 250.0 47.0 260.0 0.0 . 337 . . Atlas-SNP ANKRA2 57763 hgsc.bcm.edu hg19 5 72857022 72857022 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ANKRA2 NM_023039 exon3 c.A381G p.K127K TGACTGTTTTATG . 241.0 25.0 216.0 0.0 . 23 . . Atlas-SNP AP3B1 8546 hgsc.bcm.edu hg19 5 77409598 77409598 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . AP3B1 NM_003664 exon19 c.A2227G p.N743D TTGAGTTCCTCTT . 66.0 16.0 84.0 0.0 . 94 . . Atlas-SNP MCTP1 79772 hgsc.bcm.edu hg19 5 94114816 94114816 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MCTP1 NM_024717 exon19 c.A2609T p.K870M ATTACCTTGTCAT . 234.0 36.0 186.0 0.0 . 110 . . Atlas-SNP FAM81B 153643 hgsc.bcm.edu hg19 5 94749823 94749823 + Missense_Mutation SNP G G T rs202064996 by1000genomes;alternate_allele TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb FAM81B,NS,carcinoma,0,1 FAM81B NM_152548 exon4 c.G466T p.A156S TCGCTCGCCAGGA . 189.0 36.0 158.0 0.0 . 51 . G|1.000;A|0.000 Atlas-SNP CHD1 1105 hgsc.bcm.edu hg19 5 98212136 98212136 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CHD1 NM_001270 exon23 c.A3364G p.N1122D TAATATTCTCCCG . 107.0 28.0 96.0 0.0 . 137 . . Atlas-SNP SEMA6A 57556 hgsc.bcm.edu hg19 5 115811300 115811300 + Splice_Site SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SEMA6A NM_020796 exon17 c.1650-1G>C . GTCAGTCTTTTAA . 80.0 8.0 70.0 0.0 . 93 . . Atlas-SNP ZNF608 57507 hgsc.bcm.edu hg19 5 123983011 123983011 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZNF608 NM_020747 exon4 c.T3066C p.S1022S GCTCCCACTATTT . 170.0 31.0 161.0 0.0 . 117 . . Atlas-SNP PHF15 23338 hgsc.bcm.edu hg19 5 133914456 133914456 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PHF15 NM_015288 exon11 c.C1822T p.P608S CCACCACCACCAC . 74.0 19.0 92.0 0.0 . 60 . . Atlas-SNP DDX46 9879 hgsc.bcm.edu hg19 5 134121190 134121190 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . DDX46 NM_014829 exon11 c.C1378G p.Q460E GCTTTACAGATTA . 134.0 11.0 88.0 0.0 . 77 . . Atlas-SNP WNT8A 7478 hgsc.bcm.edu hg19 5 137426301 137426301 + Missense_Mutation SNP G G C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . WNT8A NM_058244 exon6 c.G595C p.A199P CAGCTGGCTGAAT . 144.0 17.0 124.0 0.0 . 36 . . Atlas-SNP PSD2 84249 hgsc.bcm.edu hg19 5 139219614 139219614 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PSD2 NM_032289 exon14 c.G1971A p.E657E GCAGGAGGAGCAA . 159.0 18.0 173.0 0.0 . 88 . . Atlas-SNP NRG2 9542 hgsc.bcm.edu hg19 5 139239488 139239488 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NRG2 NM_013982 exon6 c.G1199A p.G400E TCAAATCCAAGGT . 244.0 32.0 213.0 0.0 . 69 . . Atlas-SNP PCDHGA1 56114 hgsc.bcm.edu hg19 5 140711003 140711003 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PCDHGA1 NM_018912 exon1 c.T752C p.V251A TAAATGTCCCCGA . 62.0 14.0 65.0 0.0 . 397 . . Atlas-SNP PCDH1 5097 hgsc.bcm.edu hg19 5 141248811 141248811 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PCDH1 NM_032420 exon2 c.A226T p.S76C CGAGGCTCCCAAT . 102.0 6.0 121.0 0.0 . 119 . . Atlas-SNP KCTD16 57528 hgsc.bcm.edu hg19 5 143853260 143853260 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KCTD16 NM_020768 exon4 c.C870G p.C290W CGATTGCTGCTGC . 356.0 54.0 323.0 0.0 . 70 . . Atlas-SNP SPINK6 404203 hgsc.bcm.edu hg19 5 147593570 147593570 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SPINK6 NM_205841 exon3 c.C179T p.A60V AATGTGCCTTCTG . 73.0 12.0 66.0 0.0 . 8 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150945319 150945319 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FAT2 NM_001447 exon1 c.C3174T p.D1058D GTCATCGTCCTGG . 136.0 20.0 155.0 0.0 . 465 . . Atlas-SNP NMUR2 56923 hgsc.bcm.edu hg19 5 151775082 151775082 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NMUR2 NM_020167 exon3 c.G875C p.S292T ACAAAGCTGAAGA . 322.0 57.0 296.0 0.0 . 111 . . Atlas-SNP EBF1 1879 hgsc.bcm.edu hg19 5 158250310 158250310 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . EBF1 NM_024007 exon8 c.A652G p.T218A TGACTGTCGTAGA . 135.0 20.0 93.0 0.0 . 110 . . Atlas-SNP GABRA6 2559 hgsc.bcm.edu hg19 5 161116665 161116665 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GABRA6 NM_000811 exon6 c.A553G p.I185V GAAATCATATATA . 78.0 12.0 72.0 0.0 . 139 . . Atlas-SNP ZFP2 80108 hgsc.bcm.edu hg19 5 178359572 178359572 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZFP2 NM_030613 exon5 c.A1258G p.I420V GCCTTCATTAAGA . 52.0 7.0 50.0 0.0 . 70 . . Atlas-SNP FOXC1 2296 hgsc.bcm.edu hg19 6 1612242 1612242 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FOXC1 NM_001453 exon1 c.C1562T p.S521F ACAACTCTCCAGT . 238.0 21.0 137.0 0.0 . 19 . . Atlas-SNP NRSN1 140767 hgsc.bcm.edu hg19 6 24146149 24146149 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NRSN1 NM_080723 exon4 c.A563G p.N188S TTCAAAATGTCCA . 119.0 14.0 78.0 0.0 . 31 . . Atlas-SNP POM121L2 94026 hgsc.bcm.edu hg19 6 27279209 27279209 + Silent SNP G G A rs375438522 alternate_allele TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . POM121L2 NM_033482 exon1 c.C741T p.G247G GAGGGTGCCACCT . 100.0 7.0 74.0 0.0 . 61 . . Atlas-SNP NEU1 4758 hgsc.bcm.edu hg19 6 31827993 31827993 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NEU1 NM_000434 exon5 c.A847G p.N283D AGTTGTTCTGGTT . 312.0 39.0 219.0 0.0 . 21 . . Atlas-SNP C2 717 hgsc.bcm.edu hg19 6 31911759 31911759 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . C2 NM_000063 exon14 c.G1799A p.C600Y GCACCTGTAGGGA . 135.0 19.0 110.0 0.0 . 50 . . Atlas-SNP NOTCH4 4855 hgsc.bcm.edu hg19 6 32188291 32188291 + Silent SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NOTCH4 NM_004557 exon6 c.A1050T p.T350T ACAGCTTGTGCCG . 125.0 15.0 60.0 0.0 . 201 . . Atlas-SNP KCTD20 222658 hgsc.bcm.edu hg19 6 36449534 36449534 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KCTD20 NM_173562 exon6 c.A854G p.Q285R ATTCCCAAAGTAG . 170.0 23.0 101.0 0.0 . 37 . . Atlas-SNP CPNE5 57699 hgsc.bcm.edu hg19 6 36730726 36730726 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CPNE5 NM_020939 exon12 c.G823A p.A275T CACGGGCCAGCTC . 166.0 46.0 123.0 0.0 . 56 . . Atlas-SNP MDGA1 266727 hgsc.bcm.edu hg19 6 37606362 37606362 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MDGA1 NM_153487 exon15 c.A2618G p.N873S CACACATTGCCCT . 109.0 9.0 73.0 0.0 . 104 . . Atlas-SNP TREML4 285852 hgsc.bcm.edu hg19 6 41196565 41196565 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TREML4 NM_198153 exon2 c.T177C p.S59S GACATCTCCAAGT . 125.0 17.0 80.0 0.0 . 25 . . Atlas-SNP RSPH9 221421 hgsc.bcm.edu hg19 6 43623341 43623341 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RSPH9 NM_152732 exon3 c.C436G p.Q146E ATTGACCAGATTG . 114.0 9.0 69.0 0.0 . 60 . . Atlas-SNP GPR116 221395 hgsc.bcm.edu hg19 6 46823751 46823751 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GPR116 NM_015234 exon20 c.T3921C p.S1307S TATTGGAGAACTC . 547.0 75.0 380.0 0.0 . 133 . . Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51609291 51609291 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PKHD1 NM_170724 exon60 c.A10048G p.R3350G ATTTTCTTGGACT . 176.0 25.0 132.0 0.0 . 927 . . Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51917941 51917941 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PKHD1 NM_170724 exon21 c.C2073T p.L691L CAGAGGGAGAAGG . 142.0 13.0 86.0 0.0 . 927 . . Atlas-SNP LGSN 51557 hgsc.bcm.edu hg19 6 63990576 63990576 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . LGSN NM_016571 exon4 c.A880T p.R294W ATTTCCTTGCCAC . 145.0 17.0 104.0 0.0 . 82 . . Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75884975 75884975 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . COL12A1 NM_004370 exon13 c.T2489C p.M830T AATTTCATAGTAG . 172.0 31.0 166.0 0.0 . 385 . . Atlas-SNP CASP8AP2 9994 hgsc.bcm.edu hg19 6 90581017 90581017 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CASP8AP2 NM_001137667 exon9 c.C5802T p.D1934D TGATGACCGGGAA . 121.0 23.0 161.0 0.0 . 108 . . Atlas-SNP POU3F2 5454 hgsc.bcm.edu hg19 6 99283906 99283906 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . POU3F2 NM_005604 exon1 c.C1157A p.S386Y TCACCTCCCTCGC . 129.0 48.0 78.0 0.0 . 33 . . Atlas-SNP POU3F2 5454 hgsc.bcm.edu hg19 6 99283907 99283907 + Silent SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . POU3F2 NM_005604 exon1 c.C1158A p.S386S CACCTCCCTCGCG . 126.0 46.0 78.0 0.0 . 33 . . Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 100960788 100960788 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ASCC3 NM_006828 exon40 c.A6082T p.N2028Y AGAAATTCCATGC . 118.0 17.0 74.0 0.0 . 205 . . Atlas-SNP AIM1 202 hgsc.bcm.edu hg19 6 106987360 106987360 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . AIM1 NM_001624 exon7 c.G3577A p.D1193N TTCTGGGATACAG . 176.0 22.0 133.0 0.0 . 161 . . Atlas-SNP OSTM1 28962 hgsc.bcm.edu hg19 6 108372335 108372335 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OSTM1 NM_014028 exon4 c.A683T p.Y228F GTTTTGTATGCTT . 228.0 31.0 172.0 0.0 . 22 . . Atlas-SNP RFX6 222546 hgsc.bcm.edu hg19 6 117248312 117248312 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RFX6 NM_173560 exon17 c.C2008T p.P670S GTGGGCCCAGTAC . 195.0 15.0 146.0 0.0 . 141 . . Atlas-SNP RNF146 81847 hgsc.bcm.edu hg19 6 127607830 127607830 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RNF146 NM_001242850 exon3 c.C72T p.S24S CGAGTCCTGTTCT . 326.0 34.0 207.0 0.0 . 31 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138655566 138655566 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KIAA1244 NM_020340 exon33 c.C5583T p.D1861D TGAAGACATCTTT . 106.0 11.0 79.0 0.0 . 236 . . Atlas-SNP GRM1 2911 hgsc.bcm.edu hg19 6 146755591 146755591 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GRM1 NM_000838 exon9 c.C3244T p.L1082L CTGCAGCTGAGCA . 44.0 5.0 41.0 0.0 . 419 . . Atlas-SNP SASH1 23328 hgsc.bcm.edu hg19 6 148841002 148841002 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SASH1 NM_015278 exon10 c.G1182A p.K394K GATGAAGAAGGGT . 22.0 7.0 19.0 0.0 . 123 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152740828 152740828 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SYNE1 NM_033071 exon40 c.A5318G p.E1773G TGGTGTTCAGCAA . 165.0 15.0 140.0 0.0 . 3227 . . Atlas-SNP PLG 5340 hgsc.bcm.edu hg19 6 161137785 161137785 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PLG NM_000301 exon7 c.C777T p.I259I TGACATCCCCCGC . 112.0 6.0 76.0 0.0 . 150 . . Atlas-SNP C6orf118 168090 hgsc.bcm.edu hg19 6 165715083 165715083 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb C6orf118,NS,carcinoma,0,1 C6orf118 NM_144980 exon2 c.C728T p.A243V TGGCCCGCGGCCG . 122.0 14.0 109.0 0.0 . 116 . . Atlas-SNP GPR31 2853 hgsc.bcm.edu hg19 6 167570796 167570796 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GPR31 NM_005299 exon1 c.T524A p.I175N CAGATGATGCTGA . 95.0 6.0 80.0 0.0 . 44 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47933628 47933628 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PKD1L1 NM_138295 exon15 c.G2300A p.S767N TAGTTGCTGTACA . 66.0 6.0 86.0 0.0 . 328 . . Atlas-SNP CCDC132 55610 hgsc.bcm.edu hg19 7 92905597 92905597 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb CCDC132_ENST00000305866,NS,carcinoma,-1,2 CCDC132 NM_024553 exon12 c.C922A p.Q308K AAGCTGCAATATA . 122.0 27.0 113.0 0.0 . 136 . . Atlas-SNP DYNC1I1 1780 hgsc.bcm.edu hg19 7 95614244 95614244 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . DYNC1I1 NM_004411 exon8 c.A749G p.D250G ATTCCGACATCTT . 70.0 12.0 73.0 0.0 . 111 . . Atlas-SNP IFRD1 3475 hgsc.bcm.edu hg19 7 112102235 112102235 + Splice_Site SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . IFRD1 NM_001197080 exon7 c.647+1G>A . TGAGATGTATGTA . 71.0 8.0 67.0 0.0 . 46 . . Atlas-SNP NOS3 4846 hgsc.bcm.edu hg19 7 150698351 150698351 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NOS3 NM_001160111 exon10 c.C1266T p.A422A CCACGCCGCCACG . 96.0 18.0 88.0 0.0 . 131 . . Atlas-SNP SLC4A2 6522 hgsc.bcm.edu hg19 7 150773389 150773389 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SLC4A2 NM_003040 exon23 c.G3661A p.A1221T AACGAGGCAGAGC . 116.0 21.0 97.0 0.0 . 98 . . Atlas-SNP CYP11B2 1585 hgsc.bcm.edu hg19 8 143994784 143994784 + Silent SNP G G A rs200388238 TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CYP11B2 NM_000498 exon6 c.C1038T p.A346A TGCGGCGGCCAGG . 92.0 15.0 147.0 0.0 . 107 . G|0.999;A|0.001 Atlas-SNP DMRT3 58524 hgsc.bcm.edu hg19 9 990928 990928 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . DMRT3 NM_021240 exon2 c.C1342T p.Q448X TCAAAGCAGTCCA . 139.0 19.0 165.0 0.0 . 83 . . Atlas-SNP FREM1 158326 hgsc.bcm.edu hg19 9 14824891 14824891 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FREM1 NM_144966 exon12 c.A1981T p.I661L TAGTTATATAGGC . 81.0 21.0 111.0 0.0 . 261 . . Atlas-SNP TEK 7010 hgsc.bcm.edu hg19 9 27173269 27173269 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TEK NM_000459 exon6 c.A810G p.G270G CAGTGGACAAGAG . 234.0 44.0 245.0 0.0 . 250 . . Atlas-SNP SMC5 23137 hgsc.bcm.edu hg19 9 72895730 72895730 + Missense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SMC5 NM_015110 exon6 c.G734T p.R245I ATGAAAGATATAA . 35.0 5.0 31.0 0.0 . 96 . . Atlas-SNP SPATA31C1 441452 hgsc.bcm.edu hg19 9 90535712 90535712 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . . NM_001145124 exon4 c.A890T p.E297V CGCAGGAGACTAC . 260.0 55.0 251.0 0.0 . . . . Atlas-SNP FAM22F 54754 hgsc.bcm.edu hg19 9 97082514 97082514 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FAM22F NM_017561 exon5 c.T1344C p.C448C CTGGGAACACAGC . 118.0 24.0 150.0 0.0 . 72 . . Atlas-SNP OR13C3 138803 hgsc.bcm.edu hg19 9 107298487 107298487 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OR13C3 NM_001001961 exon1 c.T608C p.I203T TTGATAATATTAT . 98.0 19.0 90.0 0.0 . 45 . . Atlas-SNP MUSK 4593 hgsc.bcm.edu hg19 9 113509954 113509954 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MUSK NM_001166280 exon8 c.G817A p.D273N GTGAAAGACCGAG . 126.0 32.0 116.0 0.0 . 112 . . Atlas-SNP PTGR1 22949 hgsc.bcm.edu hg19 9 114348379 114348379 + Silent SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PTGR1 NM_001146108 exon5 c.A276T p.T92T GTGCGTTGTCCAG . 219.0 41.0 264.0 0.0 . 23 . . Atlas-SNP COL27A1 85301 hgsc.bcm.edu hg19 9 116973290 116973290 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . COL27A1 NM_032888 exon12 c.G2351A p.G784D AGAGGGGCAAGAT . 96.0 14.0 141.0 0.0 . 200 . . Atlas-SNP FBXW2 26190 hgsc.bcm.edu hg19 9 123526906 123526906 + Silent SNP C C T rs377576429 TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FBXW2 NM_012164 exon8 c.G1296A p.T432T CAAGCCCGTGTCA . 201.0 39.0 202.0 0.0 . 34 . . Atlas-SNP NR6A1 2649 hgsc.bcm.edu hg19 9 127284984 127284984 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NR6A1 NM_033334 exon10 c.A1443G p.X481W AACAGGTCATTCC . 33.0 4.0 42.0 0.0 . 38 . . Atlas-SNP USP20 10868 hgsc.bcm.edu hg19 9 132632035 132632035 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . USP20 NM_001008563 exon14 c.T1477C p.Y493H GCCATCTACCAGA . 176.0 8.0 260.0 0.0 . 186 . . Atlas-SNP NUP214 8021 hgsc.bcm.edu hg19 9 134038560 134038560 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NUP214 NM_005085 exon19 c.G2723A p.S908N TTCACAGGTGTGG . 95.0 17.0 103.0 0.0 . 166 . . Atlas-SNP SEC16A 9919 hgsc.bcm.edu hg19 9 139361447 139361447 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SEC16A NM_014866 exon6 c.T3891C p.Y1297Y TGCGTCATACTCT . 62.0 14.0 48.0 0.0 . 249 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 16967302 16967302 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CUBN NM_001081 exon43 c.T6584A p.F2195Y GAAATAAACTGAA . 298.0 48.0 260.0 0.0 . 515 . . Atlas-SNP GPR158 57512 hgsc.bcm.edu hg19 10 25887663 25887663 + Missense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb GPR158,NS,carcinoma,0,1 GPR158 NM_020752 exon11 c.G3108T p.M1036I TGAAATGGAGAAA . 110.0 31.0 88.0 0.0 . 255 . . Atlas-SNP ANKRD30A 91074 hgsc.bcm.edu hg19 10 37507997 37507997 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ANKRD30A NM_052997 exon34 c.C3189T p.A1063A AATAGCCACACTG . 203.0 65.0 174.0 0.0 . 448 . . Atlas-SNP PCDH15 65217 hgsc.bcm.edu hg19 10 55600110 55600110 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PCDH15 NM_001142763 exon30 c.A3968G p.N1323S GCTCTGTTGGTTT . 186.0 30.0 142.0 0.0 . 1715 . . Atlas-SNP CCSER2 54462 hgsc.bcm.edu hg19 10 86131874 86131874 + Missense_Mutation SNP G G C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CCSER2 NM_018999 exon2 c.G1066C p.A356P GTTTTGGCTAAGG . 142.0 23.0 104.0 0.0 . 7 . . Atlas-SNP OPN4 94233 hgsc.bcm.edu hg19 10 88419162 88419162 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OPN4 NM_001030015 exon6 c.T770C p.L257P TCTTCCTCCCTCT . 148.0 26.0 101.0 0.0 . 61 . . Atlas-SNP BMPR1A 657 hgsc.bcm.edu hg19 10 88649933 88649933 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . BMPR1A NM_004329 exon4 c.G182A p.C61Y TAAAGTGCTATTG . 275.0 34.0 243.0 0.0 . 118 . . Atlas-SNP IFIT2 3433 hgsc.bcm.edu hg19 10 91066441 91066441 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . IFIT2 NM_001547 exon2 c.C728T p.A243V AGAAAGCCCCAGG . 137.0 12.0 129.0 0.0 . 39 . . Atlas-SNP PLCE1 51196 hgsc.bcm.edu hg19 10 95791760 95791760 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PLCE1 NM_016341 exon2 c.G957A p.K319K CAAAAAGGAGCGA . 134.0 13.0 110.0 0.0 . 543 . . Atlas-SNP SLK 9748 hgsc.bcm.edu hg19 10 105763103 105763103 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SLK NM_014720 exon9 c.A2167G p.K723E GAAAATAAAGAAG . 40.0 12.0 40.0 0.0 . 107 . . Atlas-SNP WDR96 80217 hgsc.bcm.edu hg19 10 105952057 105952057 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . WDR96 NM_025145 exon12 c.T1446C p.Y482Y CTGATCATAACTA . 75.0 19.0 69.0 0.0 . 183 . . Atlas-SNP C10orf137 26098 hgsc.bcm.edu hg19 10 127434413 127434413 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . C10orf137 NM_001202438 exon19 c.A2728G p.M910V AGGCTCATGCGGA . 166.0 50.0 128.0 0.0 . 153 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135038187 135038187 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KNDC1 NM_152643 exon30 c.G5043A p.Q1681Q GAGCCAGGTGCAC . 307.0 37.0 207.0 0.0 . 155 . . Atlas-SNP ECHS1 1892 hgsc.bcm.edu hg19 10 135179489 135179489 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ECHS1 NM_004092 exon6 c.G730C p.V244L CATTCACTGATTC . 100.0 18.0 101.0 0.0 . 31 . . Atlas-SNP ODF3 113746 hgsc.bcm.edu hg19 11 198506 198506 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ODF3 NM_053280 exon5 c.C455A p.T152N CCAATACCGTCGG . 159.0 23.0 171.0 0.0 . 27 . . Atlas-SNP PHRF1 57661 hgsc.bcm.edu hg19 11 611702 611702 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PHRF1 NM_020901 exon18 c.C4872A p.D1624E CGTGGACAAGTAC . 81.0 9.0 66.0 0.0 . 188 . . Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1081136 1081136 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MUC2 NM_002457 exon11 c.G1432A p.V478M CCCCACGTGACCG . 143.0 27.0 96.0 0.0 . 614 . . Atlas-SNP KRTAP5-3 387266 hgsc.bcm.edu hg19 11 1629511 1629511 + Silent SNP G G A rs371318576 TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KRTAP5-3 NM_001012708 exon1 c.C105T p.C35C TACACAGCAGCCG . 42.0 10.0 49.0 0.0 . 33 . . Atlas-SNP TNNT3 7140 hgsc.bcm.edu hg19 11 1955022 1955022 + Silent SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TNNT3 NM_006757 exon10 c.C243A p.A81A TGAAGCCCGGAAG . 218.0 26.0 178.0 0.0 . 68 . . Atlas-SNP TNNT3 7140 hgsc.bcm.edu hg19 11 1955023 1955023 + Silent SNP C C A rs193178655 bycluster;by1000genomes;alternate_allele TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TNNT3 NM_006757 exon10 c.C244A p.R82R GAAGCCCGGAAGA . 219.0 25.0 177.0 0.0 . 68 . C|1.000;T|0.000 Atlas-SNP INS-IGF2 723961 hgsc.bcm.edu hg19 11 2170519 2170519 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . INS-IGF2 NM_001042376 exon3 c.A244T p.T82S TGGCTGTGGCGTC . 62.0 11.0 60.0 0.0 . 8 . . Atlas-SNP TSSC4 10078 hgsc.bcm.edu hg19 11 2424378 2424378 + Missense_Mutation SNP A A C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TSSC4 NM_005706 exon2 c.A515C p.E172A TGACCGAGGTCAG . 90.0 9.0 99.0 0.0 . 19 . . Atlas-SNP DNHD1 144132 hgsc.bcm.edu hg19 11 6579426 6579426 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . DNHD1 NM_144666 exon25 c.T8901C p.P2967P TTTCCCTGGCCAG . 137.0 69.0 147.0 0.0 . 198 . . Atlas-SNP OR10A5 144124 hgsc.bcm.edu hg19 11 6867579 6867579 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OR10A5 NM_178168 exon1 c.T666C p.I222I TCGCATTGCTGCT . 452.0 54.0 445.0 0.0 . 48 . . Atlas-SNP SYT9 143425 hgsc.bcm.edu hg19 11 7334640 7334640 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SYT9 NM_175733 exon3 c.G512A p.R171Q CAATCCGAAGACA . 126.0 25.0 95.0 0.0 . 91 . . Atlas-SNP COMMD9 29099 hgsc.bcm.edu hg19 11 36296268 36296268 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . COMMD9 NM_014186 exon6 c.G511A p.V171M GCTCCACGGTGAC . 345.0 173.0 248.0 0.0 . 21 . . Atlas-SNP RAG1 5896 hgsc.bcm.edu hg19 11 36596385 36596385 + Nonsense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RAG1 NM_000448 exon2 c.A1531T p.K511X GCTGAGAAGGTAC . 205.0 41.0 152.0 0.0 . 151 . . Atlas-SNP RAG2 5897 hgsc.bcm.edu hg19 11 36614459 36614459 + Nonsense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RAG2 NM_001243785 exon3 c.C1260A p.C420X AGTAGGGCAGCAT . 104.0 14.0 113.0 0.0 . 92 . . Atlas-SNP TP53I11 9537 hgsc.bcm.edu hg19 11 44958391 44958391 + Missense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TP53I11 NM_001258324 exon5 c.C297A p.S99R GGTCTTGCTGGTC . 97.0 4.0 80.0 0.0 . 17 . . Atlas-SNP MADD 8567 hgsc.bcm.edu hg19 11 47315515 47315515 + Missense_Mutation SNP G G A rs375878509 TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MADD NM_130475 exon22 c.G3497A p.S1166N GTGTGAGCCTGAC . 132.0 32.0 128.0 0.0 . 172 . . Atlas-SNP SPI1 6688 hgsc.bcm.edu hg19 11 47376978 47376978 + Missense_Mutation SNP G G C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SPI1 NM_001080547 exon5 c.C616G p.H206D CCTTGTGCTTGGA . 109.0 19.0 117.0 0.0 . 21 . . Atlas-SNP OR4A5 81318 hgsc.bcm.edu hg19 11 51412084 51412084 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb OR4A5,NS,carcinoma,0,1 OR4A5 NM_001005272 exon1 c.C312T p.F104F ACCAAAGAAATGG . 250.0 36.0 276.0 0.0 . 116 . . Atlas-SNP OR5D18 219438 hgsc.bcm.edu hg19 11 55587463 55587463 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb OR5D18,right_upper_lobe,carcinoma,0,1 OR5D18 NM_001001952 exon1 c.G358A p.A120T GTGATGGCCTATG . 338.0 70.0 288.0 1.0 . 121 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62290481 62290481 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . AHNAK NM_001620 exon5 c.A11408G p.K3803R GGCATCTTCAGGT . 209.0 41.0 140.0 0.0 . 532 . . Atlas-SNP MAP3K11 4296 hgsc.bcm.edu hg19 11 65365896 65365896 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MAP3K11 NM_002419 exon10 c.A2410G p.T804A ACAAGGTCCAGGG . 42.0 5.0 36.0 0.0 . 67 . . Atlas-SNP RBM14 10432 hgsc.bcm.edu hg19 11 66392861 66392861 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb RBM14,colon,carcinoma,0,1 RBM14 NM_006328 exon2 c.G1514A p.G505E CCTACGGGGCCCA . 69.0 11.0 59.0 0.0 . 59 . . Atlas-SNP TMEM135 65084 hgsc.bcm.edu hg19 11 86782616 86782616 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TMEM135 NM_022918 exon3 c.G321A p.L107L CGCTCTGCCAGCA . 62.0 7.0 73.0 0.0 . 40 . . Atlas-SNP NAALAD2 10003 hgsc.bcm.edu hg19 11 89896533 89896533 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb NAALAD2,NS,carcinoma,0,1 NAALAD2 NM_005467 exon10 c.C1131G p.D377E TATTGACCCAACC . 74.0 10.0 67.0 1.0 . 113 . . Atlas-SNP MMP1 4312 hgsc.bcm.edu hg19 11 102662135 102662135 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MMP1 NM_002421 exon8 c.G1125A p.K375K GATATGCTTCACA . 149.0 23.0 135.0 0.0 . 74 . . Atlas-SNP ALG9 79796 hgsc.bcm.edu hg19 11 111740961 111740961 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ALG9 NM_001077690 exon3 c.G264A p.W88X TGGCTCCCAGTAG . 113.0 20.0 97.0 0.0 . 77 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118374789 118374789 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MLL NM_001197104 exon27 c.G8182A p.E2728K GGGACAGAGAGTG . 127.0 26.0 109.0 0.0 . 548 . . Atlas-SNP BLID 414899 hgsc.bcm.edu hg19 11 121986461 121986461 + Missense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . BLID NM_001001786 exon1 c.C170A p.P57H AACATAGGTTCTT . 183.0 29.0 162.0 0.0 . 20 . . Atlas-SNP OPCML 4978 hgsc.bcm.edu hg19 11 132306092 132306092 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OPCML NM_002545 exon6 c.A825G p.K275K GCGGCCTTTGTTT . 146.0 21.0 125.0 0.0 . 166 . . Atlas-SNP A2M 2 hgsc.bcm.edu hg19 12 9258835 9258835 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . A2M NM_000014 exon10 c.G1101A p.G367G CACCTGCCCAAAG . 107.0 12.0 82.0 0.0 . 180 . . Atlas-SNP TMEM52B 120939 hgsc.bcm.edu hg19 12 10339065 10339065 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . . NM_153022 exon3 c.T124C p.S42P CTGACGTCCCTGT . 152.0 24.0 125.0 0.0 . . . . Atlas-SNP PLBD1 79887 hgsc.bcm.edu hg19 12 14706133 14706133 + Missense_Mutation SNP G G C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PLBD1 NM_024829 exon2 c.C329G p.T110S GGGGCAGTGAGGT . 137.0 13.0 100.0 0.0 . 36 . . Atlas-SNP PIK3C2G 5288 hgsc.bcm.edu hg19 12 18552717 18552717 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PIK3C2G NM_004570 exon15 c.C2128T p.H710Y GAAATGCATACCA . 84.0 4.0 100.0 0.0 . 315 . . Atlas-SNP BICD1 636 hgsc.bcm.edu hg19 12 32260378 32260378 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . BICD1 NM_001714 exon1 c.G113A p.G38E AGTACGGGCTGGT . 125.0 11.0 139.0 0.0 . 89 . . Atlas-SNP TUBA1A 7846 hgsc.bcm.edu hg19 12 49578875 49578875 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TUBA1A NM_001270399 exon4 c.T1274C p.M425T GCAGCCATGTCCT . 336.0 90.0 348.0 0.0 . 32 . . Atlas-SNP HELB 92797 hgsc.bcm.edu hg19 12 66704296 66704296 + Nonsense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . HELB NM_033647 exon4 c.A1588T p.K530X GCGGACAAGGCTA . 144.0 18.0 101.0 0.0 . 90 . . Atlas-SNP TRHDE 29953 hgsc.bcm.edu hg19 12 72936136 72936136 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TRHDE NM_013381 exon7 c.A1653G p.Q551Q TTTGCAAGTAAGT . 35.0 9.0 26.0 0.0 . 194 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 81014030 81014030 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PTPRQ NM_001145026 exon29 c.A4971G p.T1657T ATGTACAGAAGGA . 189.0 53.0 175.0 0.0 . 119 . . Atlas-SNP NR2C1 7181 hgsc.bcm.edu hg19 12 95422248 95422248 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NR2C1 NM_003297 exon12 c.A1446G p.L482L CTCCTGTAGTTTG . 64.0 6.0 63.0 0.0 . 56 . . Atlas-SNP CMKLR1 1240 hgsc.bcm.edu hg19 12 108686719 108686719 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CMKLR1 NM_001142344 exon3 c.T21A p.D7E GTTGTAATCTTCA . 119.0 6.0 136.0 0.0 . 67 . . Atlas-SNP TRPV4 59341 hgsc.bcm.edu hg19 12 110230527 110230527 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TRPV4 NM_021625 exon11 c.G1754T p.G585V ATCCAGCCCAGGA . 155.0 17.0 123.0 0.0 . 88 . . Atlas-SNP RBM19 9904 hgsc.bcm.edu hg19 12 114296692 114296692 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RBM19 NM_001146699 exon22 c.G2568A p.G856G CAACTCCCCAAAG . 88.0 31.0 99.0 0.0 . 117 . . Atlas-SNP HIP1R 9026 hgsc.bcm.edu hg19 12 123338690 123338690 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . HIP1R NM_003959 exon8 c.C678T p.L226L CCACCTCTACCAC . 61.0 5.0 88.0 0.0 . 68 . . Atlas-SNP TMEM132D 121256 hgsc.bcm.edu hg19 12 129559407 129559407 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TMEM132D NM_133448 exon9 c.G2313C p.M771I AATAACCATTTCC . 269.0 14.0 251.0 0.0 . 299 . . Atlas-SNP AMER2 219287 hgsc.bcm.edu hg19 13 25743926 25743926 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . . NM_152704 exon1 c.G1832C p.S611T TTGATGCTAATAG . 257.0 59.0 366.0 0.0 . . . . Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 28942739 28942739 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FLT1 NM_001160030 exon15 c.A2178G p.S726S TGACGATGATGAT . 99.0 10.0 54.0 0.0 . 393 . . Atlas-SNP KLF12 11278 hgsc.bcm.edu hg19 13 74387348 74387348 + Silent SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KLF12 NM_007249 exon5 c.C747A p.T249T ATCTAAGGTCACA . 170.0 38.0 222.0 0.0 . 42 . . Atlas-SNP MYO16 23026 hgsc.bcm.edu hg19 13 109792700 109792700 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MYO16 NM_001198950 exon32 c.G4140A p.K1380K CACCAAGCTCAGC . 6.0 4.0 8.0 0.0 . 285 . . Atlas-SNP ACTR10 55860 hgsc.bcm.edu hg19 14 58690343 58690343 + Missense_Mutation SNP G G A rs372667907 TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ACTR10 NM_018477 exon9 c.G638A p.R213H AAGCGCGTACTTG . 65.0 20.0 65.0 0.0 . 33 . . Atlas-SNP RTN1 6252 hgsc.bcm.edu hg19 14 60074189 60074189 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RTN1 NM_021136 exon4 c.G1787A p.R596Q ATGTCCCGCCAAT . 134.0 23.0 190.0 0.0 . 139 . . Atlas-SNP PAPLN 89932 hgsc.bcm.edu hg19 14 73721644 73721644 + Silent SNP G G A rs369082075 TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb PAPLN_ENST00000427855,NS,carcinoma,0,2 PAPLN NM_173462 exon13 c.G1464A p.P488P TGGGCCGCCCAGC . 37.0 14.0 35.0 1.0 . 180 . . Atlas-SNP SEL1L 6400 hgsc.bcm.edu hg19 14 81955626 81955626 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SEL1L NM_005065 exon14 c.G1365T p.M455I GTAGGCCATTCCA . 182.0 25.0 160.0 0.0 . 67 . . Atlas-SNP EML5 161436 hgsc.bcm.edu hg19 14 89202777 89202777 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . EML5 NM_183387 exon7 c.A980T p.E327V CAAAGTTCACCTT . 185.0 38.0 185.0 0.0 . 141 . . Atlas-SNP KCNK13 56659 hgsc.bcm.edu hg19 14 90651207 90651207 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KCNK13 NM_022054 exon2 c.C1087T p.L363L GCCATCCTGCAGA . 163.0 26.0 169.0 0.0 . 76 . . Atlas-SNP RTL1 388015 hgsc.bcm.edu hg19 14 101350875 101350875 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RTL1 NM_001134888 exon1 c.C251T p.P84L TTACGTGGGCCAC . 103.0 16.0 119.0 0.0 . 120 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105414859 105414859 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . AHNAK2 NM_138420 exon7 c.A6929G p.D2310G GTCACGTCCTTGT . 122.0 28.0 159.0 0.0 . 719 . . Atlas-SNP NPAP1 23742 hgsc.bcm.edu hg19 15 24921553 24921553 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb C15orf2,NS,carcinoma,0,1 . NM_018958 exon1 c.T539C p.L180P CCCCCCTTAGCAG . 97.0 15.0 85.0 0.0 . . . . Atlas-SNP GABRB3 2562 hgsc.bcm.edu hg19 15 26793135 26793135 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GABRB3 NM_021912 exon9 c.A1227G p.R409R CCCTTCTCGAGGC . 174.0 37.0 167.0 0.0 . 338 . . Atlas-SNP CHRM5 1133 hgsc.bcm.edu hg19 15 34356472 34356472 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CHRM5 NM_012125 exon3 c.A1554G p.K518K GAAAAAAGTGGAA . 103.0 11.0 99.0 0.0 . 59 . . Atlas-SNP CASC5 57082 hgsc.bcm.edu hg19 15 40920293 40920293 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CASC5 NM_170589 exon12 c.A5480G p.D1827G AAGAGGATATAGA . 89.0 17.0 113.0 0.0 . 269 . . Atlas-SNP SPINT1 6692 hgsc.bcm.edu hg19 15 41137074 41137074 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SPINT1 NM_181642 exon2 c.C322T p.R108C CCCGACCGCGGGG . 70.0 9.0 80.0 0.0 . 28 . . Atlas-SNP INO80 54617 hgsc.bcm.edu hg19 15 41337196 41337196 + Missense_Mutation SNP T T A rs115089447 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . INO80 NM_017553 exon24 c.A2813T p.E938V TGGCTCTCCCCTT . 66.0 14.0 63.0 0.0 . 122 . T|0.989;C|0.011 Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48719788 48719788 + Nonsense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FBN1 NM_000138 exon58 c.C7180T p.R2394X ATCCTCGGCCATG . 137.0 12.0 124.0 0.0 . 310 . . Atlas-SNP RFX7 64864 hgsc.bcm.edu hg19 15 56394441 56394441 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RFX7 NM_022841 exon6 c.A529G p.S177G GTCCACTGTAGCA . 47.0 10.0 54.0 0.0 . 170 . . Atlas-SNP VPS13C 54832 hgsc.bcm.edu hg19 15 62219327 62219327 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . VPS13C NM_020821 exon52 c.C6479T p.P2160L AGAAAAGGGCAAG . 117.0 17.0 142.0 0.0 . 506 . . Atlas-SNP HEXA 3073 hgsc.bcm.edu hg19 15 72643535 72643535 + Missense_Mutation SNP T T A rs121907976 alternate_allele TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . HEXA NM_000520 exon6 c.A611T p.H204L ACCAGATGCCAGT . 174.0 24.0 116.0 0.0 . 48 . . Atlas-SNP IQGAP1 8826 hgsc.bcm.edu hg19 15 91043276 91043276 + Missense_Mutation SNP A A C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . IQGAP1 NM_003870 exon38 c.A4910C p.D1637A TATTTGATAGAGC . 69.0 5.0 76.0 0.0 . 140 . . Atlas-SNP IGF1R 3480 hgsc.bcm.edu hg19 15 99451929 99451929 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb IGF1R,colon,carcinoma,0,1 IGF1R NM_000875 exon6 c.C1263T p.Y421Y CTTCTACGTCCTC . 190.0 15.0 195.0 0.0 . 147 . . Atlas-SNP LRRK1 79705 hgsc.bcm.edu hg19 15 101592136 101592136 + Silent SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . LRRK1 NM_024652 exon24 c.T3660A p.P1220P GGTCCCTGAACTG . 108.0 10.0 134.0 0.0 . 310 . . Atlas-SNP NUP93 9688 hgsc.bcm.edu hg19 16 56872968 56872968 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NUP93 NM_014669 exon19 c.A2123T p.D708V ATATTGATAGAGC . 223.0 54.0 201.0 0.0 . 75 . . Atlas-SNP CNTNAP4 85445 hgsc.bcm.edu hg19 16 76513378 76513378 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CNTNAP4 NM_138994 exon11 c.A1606G p.I536V TACTATATAGATT . 171.0 26.0 195.0 0.0 . 600 . . Atlas-SNP ADAMTS18 170692 hgsc.bcm.edu hg19 16 77398168 77398168 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ADAMTS18 NM_199355 exon5 c.A889G p.T297A CGAGGGTTTCCAC . 218.0 51.0 222.0 0.0 . 270 . . Atlas-SNP VAT1L 57687 hgsc.bcm.edu hg19 16 77859180 77859180 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . VAT1L NM_020927 exon3 c.C401T p.A134V ACAATGCCTGGGC . 250.0 43.0 292.0 0.0 . 68 . . Atlas-SNP ZC3H18 124245 hgsc.bcm.edu hg19 16 88643755 88643755 + Missense_Mutation SNP A A C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZC3H18 NM_144604 exon2 c.A224C p.E75A CAAGTGAGCCTAA . 52.0 9.0 83.0 0.0 . 90 . . Atlas-SNP PELP1 27043 hgsc.bcm.edu hg19 17 4576104 4576104 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PELP1 NM_014389 exon16 c.G2182A p.E728K GGTTCTCAGGGCC . 64.0 26.0 78.0 0.0 . 102 . . Atlas-SNP PELP1 27043 hgsc.bcm.edu hg19 17 4576404 4576404 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PELP1 NM_014389 exon16 c.G1882A p.A628T GAGCAGCACAGGT . 74.0 25.0 83.0 0.0 . 102 . . Atlas-SNP GP1BA 2811 hgsc.bcm.edu hg19 17 4837033 4837033 + Silent SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GP1BA NM_000173 exon2 c.C1134A p.S378S AAAATCCACTACT . 130.0 59.0 105.0 0.0 . 53 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7720031 7720031 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb DNAH2,NS,carcinoma,0,1 DNAH2 NM_020877 exon63 c.C9872T p.A3291V AGAAGGCCAGATG . 88.0 27.0 134.0 1.0 . 498 . . Atlas-SNP MYOCD 93649 hgsc.bcm.edu hg19 17 12666558 12666558 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MYOCD NM_001146312 exon14 c.A2558G p.E853G GTGATGAGCATCT . 194.0 124.0 155.0 0.0 . 291 . . Atlas-SNP ADORA2B 136 hgsc.bcm.edu hg19 17 15878262 15878262 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ADORA2B NM_000676 exon2 c.A605G p.Y202C TGATCTACATTAA . 165.0 102.0 189.0 1.0 . 23 . . Atlas-SNP SMCR7 125170 hgsc.bcm.edu hg19 17 18167688 18167688 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SMCR7 NM_148886 exon4 c.G1008A p.L336L GGGGCTGGCGGGG . 14.0 12.0 8.0 0.0 . 20 . . Atlas-SNP ARL5C 390790 hgsc.bcm.edu hg19 17 37321340 37321340 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ARL5C NM_001143968 exon2 c.C99T p.L33L CCGGTAGAGAATG . 153.0 16.0 156.0 0.0 . 3 . . Atlas-SNP CCR7 1236 hgsc.bcm.edu hg19 17 38711491 38711491 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CCR7 NM_001838 exon3 c.A640G p.T214A GCTCTGTGATGAG . 205.0 28.0 135.0 0.0 . 31 . . Atlas-SNP KRT27 342574 hgsc.bcm.edu hg19 17 38938637 38938637 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KRT27 NM_181537 exon1 c.G109A p.G37S GCACACCGCATGT . 145.0 13.0 117.0 0.0 . 41 . . Atlas-SNP ACE 1636 hgsc.bcm.edu hg19 17 61573828 61573828 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ACE NM_000789 exon23 c.C3454T p.L1152L GGCCCCCTGCACA . 335.0 202.0 339.0 1.0 . 187 . . Atlas-SNP KCNJ2 3759 hgsc.bcm.edu hg19 17 68171825 68171825 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KCNJ2 NM_000891 exon2 c.C645T p.G215G AGTGGGCAATCTT . 144.0 22.0 102.0 0.0 . 74 . . Atlas-SNP DNAI2 64446 hgsc.bcm.edu hg19 17 72285791 72285791 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . DNAI2 NM_001172810 exon5 c.A526G p.R176G GGCAACAGGAAGT . 125.0 83.0 98.0 0.0 . 102 . . Atlas-SNP ST6GALNAC2 10610 hgsc.bcm.edu hg19 17 74569415 74569415 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ST6GALNAC2 NM_006456 exon4 c.G392A p.G131D TCTGAGCCGTTCA . 46.0 9.0 52.0 0.0 . 29 . . Atlas-SNP MFSD11 79157 hgsc.bcm.edu hg19 17 74774280 74774280 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MFSD11 NM_001242532 exon13 c.C1196A p.A399E TTTGCGCAGCCGT . 285.0 31.0 203.0 0.0 . 47 . . Atlas-SNP ANKRD12 23253 hgsc.bcm.edu hg19 18 9254383 9254383 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ANKRD12 NM_015208 exon9 c.A1118G p.K373R TTAATAAGATGAT . 95.0 10.0 105.0 0.0 . 167 . . Atlas-SNP TRAPPC8 22878 hgsc.bcm.edu hg19 18 29511372 29511372 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb TRAPPC8,NS,carcinoma,0,1 TRAPPC8 NM_014939 exon2 c.A272T p.D91V ACAACATCATTCA . 129.0 18.0 165.0 0.0 . 126 . . Atlas-SNP TCEB3B 51224 hgsc.bcm.edu hg19 18 44560523 44560523 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TCEB3B NM_016427 exon1 c.T1113A p.D371E AGCCATATCTACC . 58.0 10.0 98.0 0.0 . 141 . . Atlas-SNP FEM1A 55527 hgsc.bcm.edu hg19 19 4793795 4793795 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb FEM1A,colon,carcinoma,0,1 FEM1A NM_018708 exon1 c.G1929A p.A643A CCTTGCGGCCCGG . 67.0 11.0 42.0 0.0 . 41 . . Atlas-SNP CATSPERD 257062 hgsc.bcm.edu hg19 19 5766134 5766134 + Silent SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . . NM_152784 exon17 c.C1527G p.G509G AGTTGGCTGCGAC . 157.0 22.0 124.0 0.0 . . . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9056445 9056445 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MUC16 NM_024690 exon3 c.C31001T p.S10334F GTTGAAGAGGAGA . 262.0 31.0 200.0 0.0 . 4315 . . Atlas-SNP ZNF426 79088 hgsc.bcm.edu hg19 19 9641667 9641667 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb ZNF426,NS,carcinoma,0,1 ZNF426 NM_024106 exon7 c.A402G p.I134M CAATTGTATCCCA . 91.0 9.0 87.0 0.0 . 56 . . Atlas-SNP ZNF441 126068 hgsc.bcm.edu hg19 19 11888524 11888524 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZNF441 NM_152355 exon2 c.G102A p.Q34Q GATGCAGGAAACC . 191.0 19.0 180.0 0.0 . 123 . . Atlas-SNP ZNF439 90594 hgsc.bcm.edu hg19 19 11978948 11978948 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZNF439 NM_152262 exon3 c.A1064G p.E355G CTTATGAATGTAA . 94.0 11.0 76.0 0.0 . 67 . . Atlas-SNP OR7C2 26658 hgsc.bcm.edu hg19 19 15052324 15052324 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . OR7C2 NM_012377 exon1 c.A24T p.E8D AACAGAAGTTGGA . 131.0 14.0 89.0 0.0 . 50 . . Atlas-SNP ELL 8178 hgsc.bcm.edu hg19 19 18576653 18576653 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ELL NM_006532 exon3 c.G259A p.D87N GGTTGTCGCGGCC . 57.0 7.0 75.0 0.0 . 52 . . Atlas-SNP ZNF714 148206 hgsc.bcm.edu hg19 19 21299624 21299624 + Missense_Mutation SNP T T C rs371085101 TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZNF714 NM_182515 exon5 c.T154C p.S52P TGTTCTTCTTTTA . 76.0 42.0 79.0 0.0 . 121 . . Atlas-SNP CEP89 84902 hgsc.bcm.edu hg19 19 33439208 33439208 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CEP89 NM_032816 exon5 c.G559A p.G187S GGGAGCCTGGAAA . 59.0 9.0 38.0 0.0 . 82 . . Atlas-SNP ZFP30 22835 hgsc.bcm.edu hg19 19 38127120 38127120 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb ZFP30,colon,carcinoma,+1,1 ZFP30 NM_014898 exon6 c.A322G p.R108G TAATTCTTTCCAT . 142.0 38.0 121.0 1.0 . 68 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38382236 38382236 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . WDR87 NM_031951 exon5 c.C3233T p.P1078L TTGCTGGGCTTGA . 201.0 30.0 158.0 0.0 . 191 . . Atlas-SNP TIMM50 92609 hgsc.bcm.edu hg19 19 39980382 39980382 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TIMM50 NM_001001563 exon11 c.G1293A p.E431E GGCCGAGCTCTCC . 162.0 20.0 93.0 0.0 . 37 . . Atlas-SNP MEGF8 1954 hgsc.bcm.edu hg19 19 42859978 42859978 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb MEGF8_ENST00000334370,caecum,carcinoma,0,3 MEGF8 NM_001271938 exon24 c.G4213A p.A1405T GGCTCTGCCCGCT . 57.0 9.0 76.0 0.0 . 358 . . Atlas-SNP ZNF222 7673 hgsc.bcm.edu hg19 19 44536345 44536345 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZNF222 NM_001129996 exon4 c.A638G p.Y213C AATGCTATAAGTG . 267.0 30.0 200.0 0.0 . 90 . . Atlas-SNP CLASRP 11129 hgsc.bcm.edu hg19 19 45543521 45543521 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CLASRP NM_007056 exon2 c.C51T p.V17V GATGGTCGACTAC . 243.0 24.0 183.0 0.0 . 44 . . Atlas-SNP SYNGR4 23546 hgsc.bcm.edu hg19 19 48879425 48879425 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SYNGR4 NM_012451 exon5 c.G555A p.M185I TGGCATGGTGCTG . 188.0 28.0 148.0 0.0 . 31 . . Atlas-SNP SIGLEC11 114132 hgsc.bcm.edu hg19 19 50464033 50464033 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SIGLEC11 NM_052884 exon2 c.G236A p.S79N TTTGGGCTGGTCC . 221.0 27.0 176.0 0.0 . 70 . . Atlas-SNP KLK9 284366 hgsc.bcm.edu hg19 19 51506441 51506441 + Silent SNP T T G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . KLK9 NM_012315 exon5 c.A679C p.R227R GGGGTCTGGAGCA . 79.0 9.0 65.0 0.0 . 27 . . Atlas-SNP ZNF578 147660 hgsc.bcm.edu hg19 19 53014631 53014631 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . . NM_001099694 exon6 c.C997T p.H333Y ACATGCCATCATA . 218.0 37.0 163.0 0.0 . . . . Atlas-SNP NLRP7 199713 hgsc.bcm.edu hg19 19 55453072 55453072 + Missense_Mutation SNP G G A rs142163492 TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NLRP7 NM_001127255 exon2 c.C8T p.S3L TGGGGCGATGTCA . 93.0 9.0 75.0 0.0 . 411 . G|1.000;A|0.000 Atlas-SNP FAM71E2 284418 hgsc.bcm.edu hg19 19 55871144 55871144 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FAM71E2 NM_001145402 exon9 c.C1092T p.P364P GGGATAGGGAGCC . 159.0 16.0 141.0 0.0 . 41 . . Atlas-SNP NLRP4 147945 hgsc.bcm.edu hg19 19 56369470 56369470 + Missense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NLRP4 NM_134444 exon3 c.G711T p.Q237H GCTGCAGGGCGGC . 189.0 33.0 127.0 0.0 . 331 . . Atlas-SNP ZNF135 7694 hgsc.bcm.edu hg19 19 58578913 58578913 + Missense_Mutation SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZNF135 NM_007134 exon4 c.A1133T p.Y378F AACCCTATCAGTG . 188.0 26.0 138.0 0.0 . 159 . . Atlas-SNP RRBP1 6238 hgsc.bcm.edu hg19 20 17616198 17616198 + Nonsense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RRBP1 NM_004587 exon7 c.G1150T p.E384X TGCTCTCCACCTG . 69.0 21.0 65.0 0.0 . 157 . . Atlas-SNP THBD 7056 hgsc.bcm.edu hg19 20 23028767 23028767 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . THBD NM_000361 exon1 c.C1375T p.P459S TACCGGGGAGGTT . 129.0 20.0 129.0 0.0 . 26 . . Atlas-SNP C20orf24 55969 hgsc.bcm.edu hg19 20 35238002 35238002 + Splice_Site SNP A A T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . C20orf24 NM_001199534 exon3 c.219-2A>T . TGCTCCAGATTCT . 229.0 26.0 180.0 0.0 . 17 . . Atlas-SNP ZHX3 23051 hgsc.bcm.edu hg19 20 39833219 39833219 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZHX3 NM_015035 exon3 c.G338A p.G113E CTGCACCCACTGC . 96.0 20.0 84.0 0.0 . 78 . . Atlas-SNP PABPC1L 80336 hgsc.bcm.edu hg19 20 43566743 43566743 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PABPC1L NM_001124756 exon13 c.C1687G p.L563V ACCCAGCTGGCTG . 195.0 38.0 140.0 0.0 . 59 . . Atlas-SNP FAM65C 140876 hgsc.bcm.edu hg19 20 49212742 49212742 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FAM65C NM_080829 exon15 c.G1837A p.A613T CACCGGCTGTGAG . 147.0 19.0 115.0 0.0 . 87 . . Atlas-SNP SYCP2 10388 hgsc.bcm.edu hg19 20 58489028 58489028 + Splice_Site SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SYCP2 NM_014258 exon12 c.830+2T>C . AAGTTTACCTTCT . 133.0 22.0 83.0 0.0 . 204 . . Atlas-SNP TCFL5 10732 hgsc.bcm.edu hg19 20 61488865 61488865 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TCFL5 NM_006602 exon4 c.G1120A p.G374S AAGCGCCTTGTGT . 172.0 19.0 116.0 0.0 . 43 . . Atlas-SNP LIPI 149998 hgsc.bcm.edu hg19 21 15579225 15579225 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . LIPI NM_198996 exon1 c.A20G p.H7R TTATTATGTAAAC . 58.0 14.0 48.0 0.0 . 95 . . Atlas-SNP TIAM1 7074 hgsc.bcm.edu hg19 21 32638540 32638540 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TIAM1 NM_003253 exon5 c.G749T p.G250V TTGCTCCCCGGCC . 73.0 9.0 112.0 0.0 . 522 . . Atlas-SNP AIRE 326 hgsc.bcm.edu hg19 21 45709596 45709596 + Missense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb AIRE,NS,carcinoma,0,1 AIRE NM_000383 exon6 c.G709A p.E237K AAGTTCGAAGACT . 132.0 27.0 159.0 1.0 . 61 . . Atlas-SNP PCNT 5116 hgsc.bcm.edu hg19 21 47754602 47754602 + Missense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PCNT NM_006031 exon3 c.G559T p.V187F TTCACAGTCAGTG . 319.0 38.0 309.0 0.0 . 283 . . Atlas-SNP MICAL3 57553 hgsc.bcm.edu hg19 22 18347690 18347690 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MICAL3 NM_001136004 exon23 c.G2952A p.V984V GCTGGCCACGGCG . 148.0 29.0 129.0 0.0 . 53 . . Atlas-SNP SEC14L4 284904 hgsc.bcm.edu hg19 22 30899672 30899672 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SEC14L4 NM_001161368 exon2 c.G122A p.W41X CGCAGCCAGCGCA . 72.0 13.0 62.0 0.0 . 43 . . Atlas-SNP EIF3D 8664 hgsc.bcm.edu hg19 22 36920731 36920731 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . EIF3D NM_003753 exon4 c.A218G p.H73R TCCTCATGGAAAT . 210.0 42.0 147.0 0.0 . 37 . . Atlas-SNP TCF20 6942 hgsc.bcm.edu hg19 22 42606358 42606358 + Missense_Mutation SNP C C G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . TCF20 NM_181492 exon1 c.G4954C p.A1652P CCTCAGCATTGAT . 326.0 34.0 317.0 0.0 . 164 . . Atlas-SNP GPM6B 2824 hgsc.bcm.edu hg19 X 13801604 13801604 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . GPM6B NM_001001995 exon4 c.G405A p.A135A AAAGGACGCAATT . 210.0 29.0 209.0 0.0 . 46 . . Atlas-SNP MOSPD2 158747 hgsc.bcm.edu hg19 X 14910893 14910893 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MOSPD2 NM_152581 exon3 c.A128G p.D43G AACAAGATGATAA . 177.0 25.0 179.0 0.0 . 46 . . Atlas-SNP RAI2 10742 hgsc.bcm.edu hg19 X 17818831 17818831 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RAI2 NM_001172739 exon3 c.T1300C p.S434P CCTGGGACTCGCC . 58.0 12.0 58.0 0.0 . 66 . . Atlas-SNP MAGEB6 158809 hgsc.bcm.edu hg19 X 26212302 26212302 + Silent SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MAGEB6 NM_173523 exon2 c.C339A p.G113G CACTGGCTCTCCT . 215.0 59.0 192.0 0.0 . 91 . . Atlas-SNP UBA1 7317 hgsc.bcm.edu hg19 X 47062208 47062208 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . UBA1 NM_153280 exon11 c.A1228G p.M410V GAAGTCATGAAGG . 102.0 17.0 84.0 0.0 . 89 . . Atlas-SNP CCDC22 28952 hgsc.bcm.edu hg19 X 49103272 49103272 + Silent SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CCDC22 NM_014008 exon7 c.C795T p.A265A TGGGGCCCCCATA . 33.0 8.0 45.0 0.0 . 69 . . Atlas-SNP CCNB3 85417 hgsc.bcm.edu hg19 X 50037910 50037910 + Missense_Mutation SNP G G C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CCNB3 NM_033031 exon4 c.G252C p.E84D TAAAGAGTTTGTA . 191.0 38.0 213.0 0.0 . 367 . . Atlas-SNP SHROOM4 57477 hgsc.bcm.edu hg19 X 50345797 50345797 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SHROOM4 NM_020717 exon7 c.T3778C p.F1260L GCGAAAAGTGCTG . 92.0 19.0 152.0 0.0 . 171 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53563161 53563161 + Missense_Mutation SNP G G C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . HUWE1 NM_031407 exon80 c.C12478G p.L4160V CCAGCAGATAAAC . 253.0 56.0 294.0 0.0 . 724 . . Atlas-SNP ITIH6 347365 hgsc.bcm.edu hg19 X 54823434 54823434 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . . NM_198510 exon2 c.C198T p.A66A TTCATGGGCTTCA . 342.0 14.0 333.0 0.0 . . . . Atlas-SNP SPIN4 139886 hgsc.bcm.edu hg19 X 62570078 62570078 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SPIN4 NM_001012968 exon1 c.T621C p.H207H TTTGGCATGCTCC . 192.0 44.0 239.0 0.0 . 29 . . Atlas-SNP FOXO4 4303 hgsc.bcm.edu hg19 X 70320820 70320820 + Missense_Mutation SNP G G A rs367715683 bycluster TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FOXO4 NM_005938 exon2 c.G740A p.R247H GAAACCGTGAAGA . 116.0 30.0 140.0 0.0 . 60 . . Atlas-SNP CYSLTR1 10800 hgsc.bcm.edu hg19 X 77528233 77528233 + Silent SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CYSLTR1 NM_006639 exon3 c.A1011G p.V337V AAACTATACTTTA . 122.0 22.0 166.0 0.0 . 59 . . Atlas-SNP CYLC1 1538 hgsc.bcm.edu hg19 X 83129239 83129239 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CYLC1 NM_021118 exon4 c.A1523G p.D508G AGAAAGATATCAA . 92.0 27.0 142.0 0.0 . 272 . . Atlas-SNP PCDH11X 27328 hgsc.bcm.edu hg19 X 91133861 91133861 + Missense_Mutation SNP G G C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PCDH11X NM_001168363 exon2 c.G2622C p.K874N GAAGAAGAAGCAT . 455.0 94.0 502.0 1.0 . 714 . . Atlas-SNP ARL13A 392509 hgsc.bcm.edu hg19 X 100240896 100240896 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ARL13A NM_001162490 exon4 c.C371A p.P124H GGAAACCCATCTT . 53.0 12.0 65.0 0.0 . 7 . . Atlas-SNP NRK 203447 hgsc.bcm.edu hg19 X 105179196 105179196 + Silent SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . NRK NM_198465 exon21 c.A3534G p.S1178S GGAATCACCTAAG . 94.0 12.0 104.0 0.0 . 321 . . Atlas-SNP MORC4 79710 hgsc.bcm.edu hg19 X 106185319 106185319 + Missense_Mutation SNP C C A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MORC4 NM_001085354 exon16 c.G2509T p.A837S ATTCAGCTTGGCG . 119.0 26.0 181.0 0.0 . 155 . . Atlas-SNP DOCK11 139818 hgsc.bcm.edu hg19 X 117752606 117752606 + Missense_Mutation SNP A A G rs112023398 TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . DOCK11 NM_144658 exon31 c.A3386G p.D1129G TTCAGGACAATTA . 256.0 57.0 325.0 0.0 . 185 . A|0.500;G|0.500 Atlas-SNP ZNF280C 55609 hgsc.bcm.edu hg19 X 129349772 129349772 + Missense_Mutation SNP T T A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . ZNF280C NM_017666 exon14 c.A1831T p.N611Y TTATGTTCTTCAA . 78.0 14.0 82.0 0.0 . 63 . . Atlas-SNP FRMD7 90167 hgsc.bcm.edu hg19 X 131212020 131212020 + Silent SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FRMD7 NM_194277 exon12 c.C2025T p.A675A GATTCTGGCCATG . 346.0 49.0 433.0 0.0 . 69 . . Atlas-SNP RBMX 27316 hgsc.bcm.edu hg19 X 135957309 135957309 + Missense_Mutation SNP A A G novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RBMX NM_001164803 exon6 c.T476C p.V159A ATCACGACCATAT . 141.0 23.0 183.0 0.0 . 149 . . Atlas-SNP MAMLD1 10046 hgsc.bcm.edu hg19 X 149638231 149638231 + Missense_Mutation SNP T T C novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . MAMLD1 NM_005491 exon3 c.T386C p.L129S AGTCATTACTGCT . 141.0 19.0 130.0 0.0 . 263 . . Atlas-SNP IRAK1 3654 hgsc.bcm.edu hg19 X 153284220 153284220 + Missense_Mutation SNP C C T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . IRAK1 NM_001569 exon5 c.G559A p.V187M GGGACACTGAGCT . 192.0 28.0 190.0 0.0 . 107 . . Atlas-SNP FLNA 2316 hgsc.bcm.edu hg19 X 153580981 153580981 + Missense_Mutation SNP G G T novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . FLNA NM_001110556 exon40 c.C6442A p.R2148S CCCGACGCCTGCG . 162.0 28.0 228.0 0.0 . 373 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13267 13267 + Nonsense_Mutation SNP G G A novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . . ENST00000361567 exon1 c.G931A p.G311X CAACTAGGACTCA . 14.0 11.0 48.0 0.0 . . . . Atlas-SNP CDHR1 92211 hgsc.bcm.edu hg19 10 85972935 85972935 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CDHR1 NM_001171971 exon16 c.1870delT p.S624fs . . 163.0 54.0 155.0 0.0 . 122 . . Atlas-Indel,Pindel PRKCB 5579 hgsc.bcm.edu hg19 16 24202416 24202416 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PRKCB NM_212535 exon16 c.1727delT p.M576fs . . 97.0 29.0 118.0 0.0 . 383 . . Atlas-Indel,Pindel CDH15 1013 hgsc.bcm.edu hg19 16 89256907 89256907 + Splice_Site DEL G G - novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CDH15 NM_004933 exon8 c.1232+2G>- . . . 35.0 14.0 38.0 0.0 . 54 . . Atlas-Indel,Pindel CACNA1B 774 hgsc.bcm.edu hg19 9 140880973 140880973 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . CACNA1B NM_001243812 exon14 c.1877delT p.L626fs . . 183.0 62.0 165.0 0.0 . 266 . . Atlas-Indel,Pindel PKHD1L1 93035 hgsc.bcm.edu hg19 8 110401347 110401347 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . PKHD1L1 NM_177531 exon8 c.662delG p.G221fs . . 142.0 26.0 130.0 0.0 . 522 . . Atlas-Indel,Pindel RPS9 6203 hgsc.bcm.edu hg19 19 54705416 54705416 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . RPS9 NM_001013 exon3 c.158delT p.I53fs . . 122.0 36.0 71.0 0.0 . 27 . . Atlas-Indel,Pindel SEMA6A 57556 hgsc.bcm.edu hg19 5 115838016 115838016 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A9-01A-11D-A25V-10 TCGA-DD-A3A9-11A-11D-A25V-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 96517058-18d2-4847-8085-768ca8aa1565 790941e2-4315-4425-9eeb-9b3ae2377bcb . SEMA6A NM_020796 exon3 c.109delC p.Q37fs . . 323.0 53.0 296.0 0.0 . 93 . . Pindel