Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
RSC1A1	6248	hgsc.bcm.edu	hg19	1	15986764	15986764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	RSC1A1	NM_006511	exon1	c.C401A	p.S134Y	GTTTATCTGTCAC	.	134.0	65.0	128.0	0.0	.	29	.	.	Atlas-SNP
FGGY	55277	hgsc.bcm.edu	hg19	1	60223627	60223627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	FGGY	NM_001113411	exon16	c.G1609T	p.V537F	AGCAAAGTTGGGA	.	71.0	27.0	61.0	0.0	.	99	.	.	Atlas-SNP
GNG12	55970	hgsc.bcm.edu	hg19	1	68171260	68171260	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	GNG12	NM_018841	exon5	c.94-1G>C	.	CGAAACCTGACAT	.	142.0	33.0	79.0	0.0	.	11	.	.	Atlas-SNP
KCNA2	3737	hgsc.bcm.edu	hg19	1	111147255	111147255	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	KCNA2	NM_001204269	exon3	c.C150A	p.T50T	GGCTAAGGTCTTT	.	102.0	46.0	105.0	0.0	.	61	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144912287	144912287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PDE4DIP	NM_001002811	exon11	c.C2477T	p.A826V	TTCTCTGCAGCAG	.	189.0	42.0	133.0	0.0	.	817	.	.	Atlas-SNP
C1orf43	25912	hgsc.bcm.edu	hg19	1	154184948	154184948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	C1orf43	NM_001098616	exon5	c.C493T	p.R165C	CATAGCGGGCTGT	.	95.0	4.0	88.0	0.0	.	36	.	.	Atlas-SNP
MNDA	4332	hgsc.bcm.edu	hg19	1	158812126	158812126	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	MNDA	NM_002432	exon2	c.T183C	p.C61C	TGCCTGTCTAGAC	.	153.0	66.0	137.0	0.0	.	147	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237758830	237758830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	RYR2,NS,carcinoma,0,3	RYR2	NM_001035	exon34	c.C4469T	p.A1490V	TATGTGCGGGTGA	.	130.0	61.0	126.0	1.0	.	1273	.	.	Atlas-SNP
KCNS3	3790	hgsc.bcm.edu	hg19	2	18113077	18113077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	KCNS3	NM_002252	exon3	c.G802T	p.A268S	TTCTATGCCACGT	.	153.0	60.0	140.0	0.0	.	85	.	.	Atlas-SNP
C2orf43	60526	hgsc.bcm.edu	hg19	2	20939926	20939926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	C2orf43	NM_021925	exon5	c.A508G	p.M170V	CAGACATTCGTTC	.	169.0	106.0	110.0	0.0	.	28	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21251347	21251347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	APOB	NM_000384	exon13	c.G1681T	p.A561S	GATAGGCAGCCAG	.	82.0	35.0	86.0	0.0	.	761	.	.	Atlas-SNP
DHX57	90957	hgsc.bcm.edu	hg19	2	39088480	39088480	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DHX57	NM_198963	exon5	c.C1072T	p.R358X	AAAATCGAATTTC	.	114.0	41.0	85.0	0.0	.	127	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54859819	54859819	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	SPTBN1	NM_003128	exon17	c.T3681C	p.A1227A	CAATGCTGTGGTG	.	141.0	54.0	96.0	0.0	.	378	.	.	Atlas-SNP
MRPL53	116540	hgsc.bcm.edu	hg19	2	74699318	74699318	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	MRPL53	NM_053050	exon3	c.C267G	p.A89A	GGCGAAGGCGGTG	.	90.0	37.0	87.0	0.0	.	13	.	.	Atlas-SNP
M1AP	130951	hgsc.bcm.edu	hg19	2	74785860	74785860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	.	NM_138804	exon11	c.G1576A	p.D526N	AGGGATCCTTCTC	.	123.0	64.0	114.0	0.0	.	.	.	.	Atlas-SNP
RGPD8	727851	hgsc.bcm.edu	hg19	2	113147588	113147588	+	Silent	SNP	A	A	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	RGPD8	NM_001164463	exon20	c.T2934G	p.T978T	TCCTGAAGTTGAT	.	668.0	43.0	594.0	0.0	.	81	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179517644	179517644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	TTN	NM_001267550	exon200	c.A38890T	p.I12964L	CCTCTATGGGAGC	.	114.0	42.0	99.0	0.0	.	18412	.	.	Atlas-SNP
RUFY4	285180	hgsc.bcm.edu	hg19	2	218940360	218940360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	RUFY4	NM_198483	exon9	c.C1145T	p.T382I	ACGCAACAAAGGA	.	149.0	76.0	77.0	0.0	.	59	.	.	Atlas-SNP
NGLY1	55768	hgsc.bcm.edu	hg19	3	25805746	25805746	+	Silent	SNP	A	A	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	NGLY1	NM_018297	exon3	c.T303A	p.I101I	GTCACGAATTTTT	.	216.0	91.0	191.0	0.0	.	57	.	.	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	hg19	3	57994556	57994556	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	FLNB	NM_001457	exon1	c.C265G	p.R89G	CTGGACCGTGAGA	.	88.0	44.0	63.0	0.0	.	430	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195518119	195518119	+	Missense_Mutation	SNP	A	A	T	rs201789760	bycluster	TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	MUC4	NM_018406	exon2	c.T332A	p.M111K	GTCTCCATCACAT	.	458.0	38.0	167.0	0.0	.	1505	.	.	Atlas-SNP
E2F3	1871	hgsc.bcm.edu	hg19	6	20481646	20481646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	E2F3	NM_001949	exon3	c.G715A	p.V239I	AACAACGTCCAAT	.	93.0	33.0	84.0	0.0	.	30	.	.	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	hg19	6	30918729	30918729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DPCR1	NM_080870	exon2	c.G2488A	p.A830T	AGGACAGCCAATG	.	105.0	33.0	91.0	0.0	.	99	.	.	Atlas-SNP
SOGA3	387104	hgsc.bcm.edu	hg19	6	127796693	127796693	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	.	NM_001012279	exon6	c.C2478T	p.G826G	GGTCTTGCCCAGG	.	26.0	10.0	24.0	0.0	.	.	.	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	hg19	7	11676308	11676308	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	THSD7A	NM_015204	exon2	c.G471C	p.E157D	CGCTATCTCCCTC	.	101.0	34.0	82.0	0.0	.	219	.	.	Atlas-SNP
DNAJC1	64215	hgsc.bcm.edu	hg19	10	22207780	22207780	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DNAJC1	NM_022365	exon6	c.G657A	p.W219X	ATCATGCCACTGT	.	66.0	30.0	49.0	0.0	.	42	.	.	Atlas-SNP
DMBT1	1755	hgsc.bcm.edu	hg19	10	124390621	124390621	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DMBT1	NM_007329	exon46	c.G5783C	p.G1928A	AGCTAGGGTGTGG	.	124.0	35.0	136.0	0.0	.	677	.	.	Atlas-SNP
OR56B4	196335	hgsc.bcm.edu	hg19	11	6129479	6129479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	OR56B4	NM_001005181	exon1	c.G471T	p.R157S	GCTCAGGAATGGC	.	110.0	47.0	81.0	0.0	.	50	.	.	Atlas-SNP
DEPDC7	91614	hgsc.bcm.edu	hg19	11	33037511	33037511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DEPDC7	NM_001077242	exon1	c.G10A	p.V4M	GCCACCGTGCAGG	.	58.0	20.0	97.0	0.0	.	94	.	.	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133815979	133815979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	IGSF9B	NM_014987	exon2	c.C239T	p.P80L	ACGTGCGGCGGGT	.	72.0	31.0	54.0	0.0	.	290	.	.	Atlas-SNP
C3AR1	719	hgsc.bcm.edu	hg19	12	8212610	8212610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	C3AR1	NM_004054	exon2	c.A172G	p.T58A	AAATTGTGTTCAC	.	94.0	37.0	85.0	0.0	.	61	.	.	Atlas-SNP
KLRC4-KLRK1	0	hgsc.bcm.edu	hg19	12	10525808	10525808	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	.	NM_001199805	exon13	c.A556T	p.K186X	CTCCCTTCTGCAT	.	146.0	58.0	149.0	0.0	.	.	.	.	Atlas-SNP
BICD1	636	hgsc.bcm.edu	hg19	12	32369238	32369238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	BICD1	NM_001714	exon2	c.G271T	p.E91X	ACTCGGGAGGAAA	.	79.0	27.0	98.0	0.0	.	89	.	.	Atlas-SNP
IFNG	3458	hgsc.bcm.edu	hg19	12	68553297	68553297	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	IFNG	NM_000619	exon1	c.C99G	p.N33K	CTTAAGGTTTTCT	.	111.0	39.0	124.0	0.0	.	38	.	.	Atlas-SNP
TPCN1	53373	hgsc.bcm.edu	hg19	12	113704076	113704076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	TPCN1	NM_001143819	exon5	c.T545C	p.L182P	TCTACCTGATGGA	.	60.0	26.0	45.0	0.0	.	109	.	.	Atlas-SNP
TAOK3	51347	hgsc.bcm.edu	hg19	12	118639247	118639247	+	Silent	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	TAOK3	NM_016281	exon12	c.C841A	p.R281R	GTGGCCGGTCTCG	.	115.0	40.0	115.0	0.0	.	151	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120578768	120578768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	GCN1L1	NM_006836	exon45	c.G5889T	p.E1963D	GATGATCTCGGGG	.	71.0	30.0	58.0	0.0	.	207	.	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132471242	132471242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	EP400	NM_015409	exon6	c.C2113T	p.R705W	ACTTCCCGGACCC	.	40.0	14.0	41.0	0.0	.	370	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103385109	103385109	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	.	NM_001146197	exon4	c.G17938T	p.E5980X	TCTCTTCTTGCAG	.	170.0	67.0	154.0	0.0	.	.	.	.	Atlas-SNP
MIS18BP1	55320	hgsc.bcm.edu	hg19	14	45700393	45700393	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	MIS18BP1	NM_018353	exon8	c.T1545C	p.D515D	AGCAGTATCTGTT	.	251.0	101.0	263.0	0.0	.	92	.	.	Atlas-SNP
NEK9	91754	hgsc.bcm.edu	hg19	14	75580093	75580093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	NEK9	NM_033116	exon8	c.G887A	p.R296K	GTAGGTCTCTGCT	.	159.0	28.0	97.0	0.0	.	64	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	hg19	14	80328058	80328058	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	NRXN3	NM_004796	exon17	c.C2937A	p.I979I	GGTGATCCGGGAG	.	60.0	30.0	56.0	0.0	.	342	.	.	Atlas-SNP
PPP4R4	57718	hgsc.bcm.edu	hg19	14	94697004	94697004	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PPP4R4	NM_058237	exon4	c.G375A	p.V125V	ATCAGTGTCAATT	.	82.0	5.0	64.0	0.0	.	107	.	.	Atlas-SNP
PLA2G4F	255189	hgsc.bcm.edu	hg19	15	42437866	42437866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PLA2G4F	NM_213600	exon16	c.G1687A	p.A563T	CAAAGGCGCTGCC	.	57.0	29.0	50.0	0.0	.	75	.	.	Atlas-SNP
JMJD8	339123	hgsc.bcm.edu	hg19	16	733364	733364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	JMJD8	NM_001005920	exon6	c.G532A	p.G178S	GCAGGCCAAATGG	.	87.0	54.0	80.0	0.0	.	14	.	.	Atlas-SNP
IL21R	50615	hgsc.bcm.edu	hg19	16	27460191	27460191	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	IL21R	NM_181079	exon10	c.C1270T	p.L424L	CCAGCCCTGGACC	.	91.0	39.0	48.0	0.0	.	95	.	.	Atlas-SNP
IL21R	50615	hgsc.bcm.edu	hg19	16	27460214	27460214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	IL21R	NM_181079	exon10	c.G1293T	p.E431D	CCTGGAGCCCAGC	.	84.0	30.0	45.0	0.0	.	95	.	.	Atlas-SNP
DUSP14	11072	hgsc.bcm.edu	hg19	17	35872856	35872856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DUSP14	NM_007026	exon3	c.A482G	p.Y161C	TAGACTACGAGCG	.	31.0	12.0	36.0	0.0	.	16	.	.	Atlas-SNP
GAST	2520	hgsc.bcm.edu	hg19	17	39872101	39872101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	GAST,NS,carcinoma,0,1	GAST	NM_000805	exon3	c.C283T	p.R95C	GGCCGCCGCAGTG	.	59.0	22.0	63.0	0.0	.	13	.	.	Atlas-SNP
ZNF385C	201181	hgsc.bcm.edu	hg19	17	40179065	40179065	+	Silent	SNP	G	G	T	rs71373480	alternate_allele	TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	ZNF385C	NM_001242704	exon8	c.C1125A	p.I375I	AGCACAGATGGCA	.	90.0	39.0	82.0	0.0	.	7	.	G|0.500;A|0.500	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76462860	76462860	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	DNAH17	NM_173628	exon56	c.G8817T	p.R2939R	TCGTACCCGCAGC	.	41.0	21.0	37.0	0.0	.	347	.	.	Atlas-SNP
TSHZ1	10194	hgsc.bcm.edu	hg19	18	72998476	72998476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	TSHZ1	NM_005786	exon2	c.G979A	p.A327T	ATGGCCGCAGAGG	.	79.0	34.0	78.0	0.0	.	104	.	.	Atlas-SNP
C19orf21	126353	hgsc.bcm.edu	hg19	19	758170	758170	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	C19orf21	NM_173481	exon2	c.C1224T	p.A408A	TGCGGCCGACCCA	.	49.0	17.0	36.0	0.0	.	56	.	.	Atlas-SNP
CEACAM6	4680	hgsc.bcm.edu	hg19	19	42266039	42266039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	CEACAM6	NM_002483	exon4	c.T866C	p.I289T	CCAACATCACTGT	.	150.0	56.0	138.0	0.0	.	52	.	.	Atlas-SNP
CARD8	22900	hgsc.bcm.edu	hg19	19	48718639	48718639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	CARD8	NM_001184900	exon10	c.G1306T	p.D436Y	GGAGATCCACTAC	.	72.0	26.0	72.0	0.0	.	53	.	.	Atlas-SNP
ZNF534	147658	hgsc.bcm.edu	hg19	19	52938382	52938382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	ZNF534	NM_001143939	exon3	c.G230A	p.R77K	AAAAGAGAGATCC	.	104.0	44.0	143.0	0.0	.	105	.	.	Atlas-SNP
SGSM1	129049	hgsc.bcm.edu	hg19	22	25275471	25275471	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	SGSM1	NM_133454	exon15	c.C1638A	p.I546I	CCAGATCCTCTCC	.	90.0	44.0	84.0	0.0	.	150	.	.	Atlas-SNP
MTMR3	8897	hgsc.bcm.edu	hg19	22	30418642	30418642	+	Silent	SNP	G	G	C	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	MTMR3_ENST00000401950,NS,carcinoma,0,1	MTMR3	NM_021090	exon19	c.G3381C	p.A1127A	CTATGCGTGCGAC	.	21.0	10.0	6.0	1.0	.	106	.	.	Atlas-SNP
RFPL2	10739	hgsc.bcm.edu	hg19	22	32588963	32588963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	RFPL2_ENST00000400237,NS,neuroblastoma,0,3	RFPL2	NM_001098527	exon4	c.C482T	p.A161V	TGGGAAGCCAGCC	.	156.0	7.0	125.0	0.0	.	81	.	.	Atlas-SNP
SMARCA1	6594	hgsc.bcm.edu	hg19	X	128641995	128641995	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	SMARCA1	NM_139035	exon7	c.A889T	p.K297X	CAGATTTTTCTTT	.	349.0	139.0	362.0	1.0	.	126	.	.	Atlas-SNP
POTEE	445582	hgsc.bcm.edu	hg19	2	132021205	132021207	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	.	NM_001083538	exon15	c.2176_2178del	p.726_726del	.	.	261.0	73.0	279.0	0.0	.	.	.	.	Atlas-INDEL
LCA5L	150082	hgsc.bcm.edu	hg19	21	40794906	40794907	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	LCA5L	NM_152505	exon5	c.833_834insA	p.I278fs	.	.	240.0	75.0	174.0	0.0	.	57	.	.	Atlas-INDEL
ZNF132	7691	hgsc.bcm.edu	hg19	19	58944869	58944870	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	ZNF132	NM_003433	exon3	c.1942_1943del	p.648_648del	.	.	75.0	30.0	68.0	0.0	.	56	.	.	Atlas-Indel,Pindel
PIK3C2B	5287	hgsc.bcm.edu	hg19	1	204394045	204394058	+	Frame_Shift_Del	DEL	GCTCTCGCAGGCGG	GCTCTCGCAGGCGG	-	novel		TCGA-DD-A3A5-01A-11D-A22F-10	TCGA-DD-A3A5-11A-11D-A22F-10	GCTCTCGCAGGCGG	GCTCTCGCAGGCGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9d536aaa-3e77-409a-a97c-a0e525c3a267	634467ec-6024-4df4-9b0a-399177ac8ba2	.	PIK3C2B	NM_002646	exon34	c.4828_4841del	p.1610_1614del	.	.	79.0	22.0	79.0	0.0	.	142	.	.	Pindel