Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CAMTA1 23261 hgsc.bcm.edu hg19 1 7797597 7797597 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CAMTA1 NM_015215 exon15 c.A3625G p.K1209E ATACCCAAGGGAG . 86.0 4.0 113.0 0.0 . 226 . . Atlas-SNP UBE4B 10277 hgsc.bcm.edu hg19 1 10179596 10179596 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . UBE4B NM_001105562 exon9 c.A1364G p.Q455R TCAGCCAGCTTCT . 74.0 4.0 91.0 0.0 . 233 . . Atlas-SNP MTOR 2475 hgsc.bcm.edu hg19 1 11301615 11301615 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MTOR NM_004958 exon10 c.A1536G p.G512G CCTTAGTCCCACT . 133.0 7.0 170.0 0.0 . 327 . . Atlas-SNP PADI1 29943 hgsc.bcm.edu hg19 1 17550123 17550123 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PADI1 NM_013358 exon3 c.T281C p.V94A TGAGGGTCTCCTA . 67.0 4.0 82.0 0.0 . 77 . . Atlas-SNP HSPG2 3339 hgsc.bcm.edu hg19 1 22180832 22180832 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . HSPG2 NM_005529 exon50 c.A6293G p.H2098R GAGCCGTGCACCT . 62.0 4.0 67.0 0.0 . 311 . . Atlas-SNP LUZP1 7798 hgsc.bcm.edu hg19 1 23420185 23420185 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LUZP1 NM_033631 exon4 c.T570C p.T190T GCTCAGAGTTAAT . 74.0 4.0 99.0 0.0 . 83 . . Atlas-SNP PAQR7 164091 hgsc.bcm.edu hg19 1 26189417 26189417 + Missense_Mutation SNP T T G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PAQR7 NM_178422 exon2 c.A914C p.E305A AGAGGCTCATAGA . 246.0 150.0 304.0 0.0 . 23 . . Atlas-SNP SLC9A1 6548 hgsc.bcm.edu hg19 1 27480593 27480593 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC9A1 NM_003047 exon1 c.T233C p.V78A TCAGTGACGGAAT . 71.0 4.0 104.0 0.0 . 68 . . Atlas-SNP KIAA1522 57648 hgsc.bcm.edu hg19 1 33235850 33235850 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIAA1522 NM_020888 exon6 c.A1070G p.H357R TTCCACATGCTGT . 97.0 4.0 109.0 0.0 . 68 . . Atlas-SNP ZMYM6 9204 hgsc.bcm.edu hg19 1 35477608 35477608 + Splice_Site SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZMYM6 NM_007167 exon9 c.947-2A>G . GACACCTTGGTGA . 74.0 4.0 71.0 0.0 . 110 . . Atlas-SNP AGO4 192670 hgsc.bcm.edu hg19 1 36298069 36298069 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_017629 exon11 c.T1277C p.V426A AGGGTGTCTGGGA . 86.0 4.0 48.0 0.0 . . . . Atlas-SNP MTF1 4520 hgsc.bcm.edu hg19 1 38281195 38281195 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MTF1 NM_005955 exon11 c.C1875T p.I625I TTTGATGATGATC . 235.0 113.0 173.0 0.0 . 67 . . Atlas-SNP TIE1 7075 hgsc.bcm.edu hg19 1 43782874 43782874 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TIE1 NM_005424 exon15 c.A2414G p.E805G AGGGCGAGGAGAC . 140.0 7.0 95.0 0.0 . 132 . . Atlas-SNP GPBP1L1 60313 hgsc.bcm.edu hg19 1 46120863 46120863 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPBP1L1 NM_021639 exon5 c.A189G p.G63G CTCACCTCCTGCA . 122.0 5.0 103.0 0.0 . 43 . . Atlas-SNP MAST2 23139 hgsc.bcm.edu hg19 1 46501154 46501154 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MAST2 NM_015112 exon29 c.T4813C p.S1605P GGTCAGTCTGGAG . 174.0 7.0 89.0 0.0 . 136 . . Atlas-SNP LRP8 7804 hgsc.bcm.edu hg19 1 53716471 53716471 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LRP8 NM_004631 exon17 c.C2567A p.T856N CTTTTGGTGTTCT . 206.0 111.0 199.0 0.0 . 58 . . Atlas-SNP INADL 10207 hgsc.bcm.edu hg19 1 62456035 62456035 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . INADL NM_176877 exon28 c.A3866G p.E1289G TCTTAGAGGTGAG . 120.0 5.0 89.0 0.0 . 179 . . Atlas-SNP SLC35D1 23169 hgsc.bcm.edu hg19 1 67518481 67518481 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC35D1 NM_015139 exon3 c.T297C p.P99P AAGGTCAGGAAAC . 124.0 5.0 68.0 0.0 . 22 . . Atlas-SNP DNTTIP2 30836 hgsc.bcm.edu hg19 1 94341250 94341250 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNTTIP2 NM_014597 exon3 c.A1757G p.Q586R TTAGACTGTAGTT . 108.0 5.0 90.0 0.0 . 59 . . Atlas-SNP SASS6 163786 hgsc.bcm.edu hg19 1 100571335 100571335 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SASS6 NM_194292 exon13 c.T1533C p.P511P CAGGTTAGGAGAA . 141.0 6.0 128.0 0.0 . 61 . . Atlas-SNP ITGA10 8515 hgsc.bcm.edu hg19 1 145534216 145534216 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ITGA10 NM_003637 exon14 c.A1721G p.E574G CTCTGGAAGATGG . 191.0 50.0 154.0 0.0 . 131 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152277969 152277969 + Missense_Mutation SNP A A C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FLG NM_002016 exon3 c.T9393G p.D3131E AGAGCTATCTACC . 441.0 111.0 341.0 0.0 . 900 . . Atlas-SNP IQGAP3 128239 hgsc.bcm.edu hg19 1 156496391 156496391 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 IQGAP3,NS,carcinoma,0,2 IQGAP3 NM_178229 exon38 c.G4783T p.D1595Y GGAGATCCTAGGA . 78.0 21.0 69.0 0.0 . 146 . . Atlas-SNP ETV3 2117 hgsc.bcm.edu hg19 1 157095521 157095521 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ETV3 NM_001145312 exon5 c.A651G p.G217G CCCTCCTCCACCA . 144.0 6.0 84.0 0.0 . 50 . . Atlas-SNP PYHIN1 149628 hgsc.bcm.edu hg19 1 158908887 158908887 + Silent SNP T T A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PYHIN1 NM_152501 exon4 c.T429A p.S143S ACCATCTGAAGAA . 149.0 50.0 130.0 0.0 . 208 . . Atlas-SNP KLHL20 27252 hgsc.bcm.edu hg19 1 173754356 173754356 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KLHL20 NM_014458 exon12 c.A1801G p.M601V ATTAAAATGACAC . 81.0 4.0 81.0 0.0 . 54 . . Atlas-SNP TOR1AIP1 26092 hgsc.bcm.edu hg19 1 179887172 179887172 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TOR1AIP1 NM_001267578 exon10 c.A1553G p.E518G AGGAAGAGACACT . 196.0 8.0 141.0 0.0 . 58 . . Atlas-SNP LAMC1 3915 hgsc.bcm.edu hg19 1 183095398 183095398 + Splice_Site SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LAMC1 NM_002293 exon16 c.2944+1G>T . GCAAACGTAAGGG . 284.0 140.0 140.0 0.0 . 176 . . Atlas-SNP NFASC 23114 hgsc.bcm.edu hg19 1 204955096 204955096 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NFASC NM_001160331 exon21 c.A2678G p.Q893R AGAGACAGCAAGC . 183.0 8.0 106.0 0.0 . 396 . . Atlas-SNP CNTN2 6900 hgsc.bcm.edu hg19 1 205031113 205031113 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CNTN2 NM_005076 exon9 c.A1094G p.E365G ACGGGGAGCCTCT . 145.0 6.0 85.0 0.0 . 116 . . Atlas-SNP PLXNA2 5362 hgsc.bcm.edu hg19 1 208270080 208270080 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PLXNA2 NM_025179 exon7 c.A1880G p.D627G CCTTGATCCAGCG . 123.0 5.0 70.0 0.0 . 178 . . Atlas-SNP INTS7 25896 hgsc.bcm.edu hg19 1 212141249 212141249 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . INTS7 NM_015434 exon15 c.T2085C p.A695A TGAGTCAGCATCA . 69.0 4.0 45.0 0.0 . 68 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237823324 237823324 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RYR2 NM_001035 exon55 c.T8248C p.S2750P TCAGACTCTTCTA . 114.0 6.0 90.0 0.0 . 1273 . . Atlas-SNP RGS7 6000 hgsc.bcm.edu hg19 1 240978079 240978079 + Splice_Site SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RGS7 NM_002924 exon13 c.784-2A>G . TTTATCTGAAAAG . 85.0 24.0 47.0 0.0 . 308 . . Atlas-SNP TAF1B 9014 hgsc.bcm.edu hg19 2 10045015 10045015 + Nonsense_Mutation SNP A A T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 TAF1B,NS,carcinoma,0,1 TAF1B NM_005680 exon9 c.A835T p.K279X ATCTACAAAAAAA . 45.0 0.0 58.0 0.0 . 62 . . Atlas-SNP SMC6 79677 hgsc.bcm.edu hg19 2 17898050 17898050 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SMC6 NM_001142286 exon14 c.A1304G p.Q435R GCTTGCTGAAACT . 142.0 6.0 190.0 0.0 . 102 . . Atlas-SNP PLB1 151056 hgsc.bcm.edu hg19 2 28855824 28855824 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PLB1 NM_153021 exon56 c.A4016G p.D1339G ACACTGACCTCAC . 141.0 7.0 125.0 0.0 . 255 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32640568 32640568 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . BIRC6 NM_016252 exon10 c.A2209G p.T737A TCAATAACTCCTT . 99.0 4.0 96.0 0.0 . 838 . . Atlas-SNP MSH6 2956 hgsc.bcm.edu hg19 2 48010412 48010412 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MSH6 NM_000179 exon1 c.T40C p.S14P CCCAAGTCTCCGG . 93.0 4.0 83.0 0.0 . 341 . . Atlas-SNP SPTBN1 6711 hgsc.bcm.edu hg19 2 54850714 54850714 + Missense_Mutation SNP T T G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SPTBN1 NM_003128 exon10 c.T1163G p.L388R GGAAGCTCATCTC . 126.0 56.0 137.0 0.0 . 378 . . Atlas-SNP EML6 400954 hgsc.bcm.edu hg19 2 55054765 55054765 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EML6 NM_001039753 exon5 c.T588C p.D196D AGGGGATCTTCAG . 113.0 7.0 101.0 0.0 . 85 . . Atlas-SNP EFEMP1 2202 hgsc.bcm.edu hg19 2 56149567 56149567 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EFEMP1 NM_001039349 exon2 c.A9G p.K3K AAGGGCTTTCAAC . 124.0 5.0 91.0 0.0 . 81 . . Atlas-SNP EHBP1 23301 hgsc.bcm.edu hg19 2 63086343 63086343 + Missense_Mutation SNP A A G rs145562120 bycluster;alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EHBP1 NM_015252 exon9 c.A779G p.K260R CAGAAAAGGACTT . 89.0 4.0 99.0 0.0 . 127 . A|1.000;C|0.000 Atlas-SNP ETAA1 54465 hgsc.bcm.edu hg19 2 67632364 67632364 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ETAA1 NM_019002 exon5 c.A2550G p.T850T AATTACACAGGGT . 132.0 7.0 125.0 0.0 . 88 . . Atlas-SNP NAGK 55577 hgsc.bcm.edu hg19 2 71297898 71297898 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NAGK NM_017567 exon3 c.A280G p.R94G GTGGAGAGGATCA . 107.0 5.0 100.0 0.0 . 34 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71908171 71908171 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 DYSF_ENST00000410020,colon,carcinoma,0,2 DYSF NM_001130987 exon54 c.A6104G p.E2035G AGAGTGAGCATGA . 92.0 4.0 70.0 0.0 . 536 . . Atlas-SNP DCTN1 1639 hgsc.bcm.edu hg19 2 74600056 74600056 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DCTN1 NM_004082 exon7 c.A452G p.K151R CTCACCTTGGGTC . 90.0 4.0 97.0 0.0 . 110 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84822906 84822906 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNAH6 NM_001370 exon18 c.A2861G p.K954R AAATGAAAGAAAA . 27.0 4.0 33.0 0.0 . 194 . . Atlas-SNP PCDP1 0 hgsc.bcm.edu hg19 2 120366133 120366133 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001271049 exon12 c.G1189A p.E397K CTTACTGAAGAGT . 100.0 4.0 84.0 0.0 . . . . Atlas-SNP MAP3K2 10746 hgsc.bcm.edu hg19 2 128075251 128075251 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MAP3K2 NM_006609 exon13 c.A1280G p.D427G TGGGGATCCCTCA . 60.0 4.0 73.0 0.0 . 78 . . Atlas-SNP GPR17 2840 hgsc.bcm.edu hg19 2 128408877 128408877 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPR17 NM_005291 exon3 c.T652C p.S218P AAGGCCTCCCACC . 112.0 5.0 77.0 0.0 . 56 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141457981 141457981 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LRP1B NM_018557 exon41 c.A6637G p.R2213G ATGGCCTTATTGG . 93.0 5.0 119.0 0.0 . 1315 . . Atlas-SNP SLC4A10 57282 hgsc.bcm.edu hg19 2 162821621 162821621 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC4A10 NM_001178015 exon23 c.A3097G p.S1033G GAACTCAGCTGGT . 88.0 4.0 86.0 0.0 . 309 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 168104144 168104144 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . XIRP2 NM_152381 exon9 c.G6242A p.R2081K TGAGCAGACAATT . 158.0 71.0 155.0 0.0 . 914 . . Atlas-SNP OSBPL6 114880 hgsc.bcm.edu hg19 2 179197376 179197376 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . OSBPL6 NM_001201482 exon7 c.A381G p.K127K TCAGAAAGGAAAG . 113.0 5.0 108.0 0.0 . 178 . . Atlas-SNP ZNF804A 91752 hgsc.bcm.edu hg19 2 185800820 185800820 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF804A NM_194250 exon4 c.T697C p.F233L GCAGCCTTCTCTG . 120.0 5.0 115.0 0.0 . 322 . . Atlas-SNP TFPI 7035 hgsc.bcm.edu hg19 2 188348910 188348910 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TFPI NM_001032281 exon6 c.A569G p.Q190R TTGAGCTGGGTTC . 91.0 4.0 81.0 0.0 . 66 . . Atlas-SNP GTF3C3 9330 hgsc.bcm.edu hg19 2 197664287 197664287 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GTF3C3 NM_001206774 exon1 c.T49C p.S17P CAAAGGAGATTTT . 100.0 4.0 94.0 0.0 . 96 . . Atlas-SNP MPP4 58538 hgsc.bcm.edu hg19 2 202514868 202514868 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MPP4 NM_033066 exon19 c.A1402G p.S468G CGTAACTCTTTTT . 93.0 4.0 77.0 0.0 . 93 . . Atlas-SNP CPS1 1373 hgsc.bcm.edu hg19 2 211523326 211523326 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CPS1 NM_001122633 exon32 c.A3688G p.K1230E CAGGTGAAGGATG . 91.0 4.0 61.0 0.0 . 485 . . Atlas-SNP SLC23A3 151295 hgsc.bcm.edu hg19 2 220028989 220028989 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC23A3 NM_001144890 exon9 c.T1263C p.A421A GAGCTGAGCCAAC . 118.0 5.0 117.0 0.0 . 60 . . Atlas-SNP TUBA4A 7277 hgsc.bcm.edu hg19 2 220115976 220115976 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TUBA4A NM_006000 exon4 c.T445C p.F149L AGGTGAAGCCAGA . 82.0 4.0 82.0 0.0 . 96 . . Atlas-SNP GRM7 2917 hgsc.bcm.edu hg19 3 7494418 7494418 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 GRM7,NS,carcinoma,0,1 GRM7 NM_000844 exon6 c.C1299T p.Y433Y TGACTACCGGGGT . 109.0 0.0 114.0 0.0 . 223 . . Atlas-SNP IL17RC 84818 hgsc.bcm.edu hg19 3 9972089 9972089 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IL17RC NM_153461 exon15 c.A1497G p.A499A GAGGGCAGCTCGC . 159.0 7.0 153.0 0.0 . 55 . . Atlas-SNP CAND2 23066 hgsc.bcm.edu hg19 3 12875342 12875342 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CAND2 NM_001162499 exon15 c.T3572C p.I1191T TGACCATCCCCGA . 140.0 7.0 124.0 0.0 . 138 . . Atlas-SNP HACL1 26061 hgsc.bcm.edu hg19 3 15613278 15613278 + Splice_Site SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 .,1 HACL1 NM_012260 exon13 c.994-2A>G . AAAAGCTTAAAAA . 39.0 3.0 31.0 0.0 . 33 . . Atlas-SNP OSBPL10 114884 hgsc.bcm.edu hg19 3 31712394 31712394 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 OSBPL10_ENST00000396556,extremity,malignant_melanoma,0,6 OSBPL10 NM_017784 exon9 c.C1808A p.P603Q ACCCACGGGATGG . 176.0 0.0 175.0 0.0 . 160 . . Atlas-SNP MAP4 4134 hgsc.bcm.edu hg19 3 47960309 47960309 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MAP4 NM_001134364 exon6 c.T552C p.A184A TACAACAGCTGTG . 107.0 5.0 90.0 0.0 . 176 . . Atlas-SNP COL7A1 1294 hgsc.bcm.edu hg19 3 48628195 48628195 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . COL7A1 NM_000094 exon13 c.A1691G p.D564G TGAACGTCATCCA . 124.0 5.0 108.0 0.0 . 320 . . Atlas-SNP DCP1A 55802 hgsc.bcm.edu hg19 3 53326495 53326495 + Silent SNP T T A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DCP1A NM_018403 exon7 c.A987T p.A329A AACCTGTGCAGTA . 431.0 164.0 464.0 0.0 . 30 . . Atlas-SNP IL17RB 55540 hgsc.bcm.edu hg19 3 53899048 53899048 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IL17RB NM_018725 exon11 c.T1222C p.C408R GGTACCTGTGGCA . 114.0 5.0 121.0 0.0 . 27 . . Atlas-SNP FILIP1L 11259 hgsc.bcm.edu hg19 3 99567249 99567249 + Nonsense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 FILIP1L_ENST00000354552,NS,lymphoid_neoplasm,0,2 FILIP1L NM_182909 exon5 c.C3271T p.R1091X GAGTTCGGTTATC . 502.0 27.0 553.0 0.0 . 154 . . Atlas-SNP ABI3BP 25890 hgsc.bcm.edu hg19 3 100569517 100569517 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ABI3BP NM_015429 exon14 c.A1287G p.P429P TGCCCTTGGCTGT . 77.0 5.0 88.0 0.0 . 305 . . Atlas-SNP TAGLN3 29114 hgsc.bcm.edu hg19 3 111718279 111718279 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TAGLN3 NM_001008272 exon2 c.A10G p.R4G GCTAACAGGGGCC . 117.0 5.0 95.0 0.0 . 44 . . Atlas-SNP KIAA1407 57577 hgsc.bcm.edu hg19 3 113723571 113723571 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIAA1407 NM_020817 exon11 c.A1891G p.T631A CTTCAGTCCCAGG . 95.0 4.0 73.0 0.0 . 80 . . Atlas-SNP ZNF80 7634 hgsc.bcm.edu hg19 3 113955213 113955213 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF80 NM_007136 exon1 c.A709G p.R237G GACTCCTTGTATG . 97.0 4.0 106.0 0.0 . 75 . . Atlas-SNP STXBP5L 9515 hgsc.bcm.edu hg19 3 120976155 120976155 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . STXBP5L NM_014980 exon17 c.A1807G p.T603A GGAGTAACAAAGG . 91.0 4.0 94.0 0.0 . 159 . . Atlas-SNP GOLGB1 2804 hgsc.bcm.edu hg19 3 121413392 121413392 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 GOLGB1,NS,carcinoma,0,1 GOLGB1 NM_001256486 exon13 c.A5978G p.K1993R TATTCCTTTCGTA . 68.0 3.0 88.0 0.0 . 319 . . Atlas-SNP SEMA5B 54437 hgsc.bcm.edu hg19 3 122642473 122642473 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SEMA5B NM_001256347 exon10 c.C1425T p.P475P GAAATTGGGGATG . 93.0 5.0 82.0 0.0 . 303 . . Atlas-SNP ZNF148 7707 hgsc.bcm.edu hg19 3 124996586 124996586 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF148 NM_021964 exon7 c.T651C p.H217H CTTCTCATGTCTC . 96.0 4.0 106.0 0.0 . 84 . . Atlas-SNP DNAJB8 165721 hgsc.bcm.edu hg19 3 128181700 128181700 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNAJB8 NM_153330 exon3 c.T389C p.L130P CCCCTCAGGCCAT . 86.0 4.0 70.0 0.0 . 34 . . Atlas-SNP RPN1 6184 hgsc.bcm.edu hg19 3 128356928 128356928 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RPN1 NM_002950 exon3 c.A347G p.K116R GGGAGCTTGACTG . 97.0 4.0 102.0 0.0 . 39 . . Atlas-SNP U2SURP 23350 hgsc.bcm.edu hg19 3 142733211 142733211 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 U2SURP,rectum,carcinoma,0,1 U2SURP NM_001080415 exon4 c.G281A p.R94Q CTAAGCGAACTTT . 173.0 7.0 190.0 1.0 . 66 . . Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178952085 178952085 + Missense_Mutation SNP A A G rs121913279 bycluster TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044 PIK3CA NM_006218 exon21 c.A3140G p.H1047R ATGCACATCATGG . 126.0 47.0 122.0 0.0 . 8460 . . Atlas-SNP IGF2BP2 10644 hgsc.bcm.edu hg19 3 185410534 185410534 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IGF2BP2 NM_001007225 exon5 c.A357G p.E119E GGCGGTTTCTGTG . 113.0 5.0 115.0 0.0 . 69 . . Atlas-SNP TNIP2 79155 hgsc.bcm.edu hg19 4 2746449 2746449 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TNIP2 NM_024309 exon4 c.A881G p.E294G ACCCGCTCCAACG . 60.0 4.0 39.0 0.0 . 28 . . Atlas-SNP SORCS2 57537 hgsc.bcm.edu hg19 4 7730078 7730078 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SORCS2 NM_020777 exon22 c.T2871C p.D957D TCCAGATCAATTT . 107.0 5.0 92.0 0.0 . 98 . . Atlas-SNP NCAPG 64151 hgsc.bcm.edu hg19 4 17839331 17839331 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NCAPG NM_022346 exon16 c.T2373C p.A791A TTTAGCTGAAATT . 80.0 4.0 68.0 0.0 . 76 . . Atlas-SNP SLIT2 9353 hgsc.bcm.edu hg19 4 20547710 20547710 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLIT2 NM_004787 exon22 c.A2333G p.H778R ACAAACATTTAAC . 95.0 4.0 85.0 0.0 . 290 . . Atlas-SNP GPR125 166647 hgsc.bcm.edu hg19 4 22425934 22425934 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPR125 NM_145290 exon11 c.G1485A p.L495L ATCAGCCAACATG . 213.0 88.0 239.0 0.0 . 118 . . Atlas-SNP GPR125 166647 hgsc.bcm.edu hg19 4 22439915 22439915 + Missense_Mutation SNP G G C rs147843055 alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 GPR125,colon,carcinoma,0,2 GPR125 NM_145290 exon8 c.C1049G p.P350R TCTGGAGGACAGT . 221.0 0.0 252.0 0.0 . 118 . . Atlas-SNP PI4K2B 55300 hgsc.bcm.edu hg19 4 25256736 25256736 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 PI4K2B,NS,carcinoma,0,1 PI4K2B NM_018323 exon3 c.T473C p.L158P GTCAACTCAATCC . 94.0 4.0 71.0 1.0 . 42 . . Atlas-SNP FIP1L1 81608 hgsc.bcm.edu hg19 4 54256722 54256722 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FIP1L1 NM_030917 exon7 c.T432C p.P144P TGCACCTGGAAGC . 88.0 4.0 101.0 0.0 . 60 . . Atlas-SNP KIT 3815 hgsc.bcm.edu hg19 4 55565812 55565812 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIT NM_000222 exon4 c.T636C p.P212P TGTGCCTGTTGTG . 104.0 5.0 83.0 0.0 . 7396 . . Atlas-SNP ALB 213 hgsc.bcm.edu hg19 4 74277806 74277806 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ALB NM_000477 exon7 c.C807T p.C269C GGAATGCTGCCAT . 123.0 5.0 109.0 0.0 . 132 . . Atlas-SNP MTHFD2L 441024 hgsc.bcm.edu hg19 4 75147266 75147266 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MTHFD2L NM_001144978 exon7 c.A930G p.E310E CTTCGAAGGTAAT . 84.0 4.0 72.0 0.0 . 41 . . Atlas-SNP CNOT6L 246175 hgsc.bcm.edu hg19 4 78697513 78697513 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CNOT6L NM_144571 exon2 c.T39C p.P13P ATCTGGAGGATCA . 125.0 5.0 97.0 0.0 . 57 . . Atlas-SNP HNRNPD 3184 hgsc.bcm.edu hg19 4 83280683 83280683 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . HNRNPD NM_031370 exon3 c.A400G p.T134A GCCCTGTGATAGG . 100.0 4.0 110.0 0.0 . 23 . . Atlas-SNP FAM13A 10144 hgsc.bcm.edu hg19 4 89652508 89652508 + Missense_Mutation SNP A A C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FAM13A NM_014883 exon23 c.T2915G p.F972C TCTTCAAAATCCC . 25.0 8.0 39.0 0.0 . 181 . . Atlas-SNP GPRIN3 285513 hgsc.bcm.edu hg19 4 90170622 90170622 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPRIN3 NM_198281 exon2 c.T640C p.S214P CAGGAGAGGATGA . 78.0 5.0 73.0 0.0 . 90 . . Atlas-SNP RAP1GDS1 5910 hgsc.bcm.edu hg19 4 99342470 99342470 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RAP1GDS1 NM_001100426 exon12 c.A1368G p.E456E GTGTGAAGCCAAA . 96.0 4.0 104.0 0.0 . 61 . . Atlas-SNP PPP3CA 5530 hgsc.bcm.edu hg19 4 101953446 101953446 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PPP3CA NM_000944 exon12 c.A1317G p.G439G CTTCCCTCCAGAA . 172.0 7.0 113.0 0.0 . 51 . . Atlas-SNP BANK1 55024 hgsc.bcm.edu hg19 4 102751252 102751252 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . BANK1 NM_017935 exon2 c.A358G p.S120G GTGAAGAGTTCAG . 81.0 4.0 92.0 0.0 . 95 . . Atlas-SNP COL25A1 84570 hgsc.bcm.edu hg19 4 109895542 109895542 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 COL25A1_ENST00000399126,NS,carcinoma,0,2 COL25A1 NM_198721 exon7 c.A473G p.Q158R TCACCTTGTTCTC . 68.0 3.0 109.0 0.0 . 178 . . Atlas-SNP CASP6 839 hgsc.bcm.edu hg19 4 110617568 110617568 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CASP6 NM_001226 exon4 c.A305G p.E102G CTACCCTCATGAA . 54.0 4.0 65.0 0.0 . 25 . . Atlas-SNP NDST4 64579 hgsc.bcm.edu hg19 4 115858629 115858629 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NDST4 NM_022569 exon5 c.G1252T p.A418S CCACAGCATAGCC . 267.0 96.0 254.0 0.0 . 193 . . Atlas-SNP LARP1B 55132 hgsc.bcm.edu hg19 4 129028308 129028308 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LARP1B NM_032239 exon9 c.C828A p.S276R GGATAGCACAGAA . 111.0 47.0 123.0 0.0 . 120 . . Atlas-SNP TLL1 7092 hgsc.bcm.edu hg19 4 167020635 167020635 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TLL1 NM_012464 exon20 c.C2863G p.L955V GATGGTCTTGATT . 290.0 104.0 266.0 0.0 . 194 . . Atlas-SNP MED10 84246 hgsc.bcm.edu hg19 5 6374436 6374436 + Splice_Site SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MED10 NM_032286 exon4 c.309+1G>A . GTCTTACCTTCAT . 264.0 58.0 186.0 0.0 . 7 . . Atlas-SNP IL7R 3575 hgsc.bcm.edu hg19 5 35867499 35867499 + Missense_Mutation SNP A A G rs199742437 alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IL7R NM_002185 exon3 c.A313G p.S105G GGAAAGAGCAATA . 100.0 26.0 70.0 0.0 . 200 . . Atlas-SNP PLCXD3 345557 hgsc.bcm.edu hg19 5 41382499 41382499 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PLCXD3 NM_001005473 exon2 c.A241G p.T81A TCATTGTCTGAGT . 121.0 5.0 70.0 0.0 . 86 . . Atlas-SNP GHR 2690 hgsc.bcm.edu hg19 5 42713594 42713594 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GHR NM_001242399 exon8 c.T869C p.F290S TGCTATTTGTATT . 88.0 4.0 56.0 0.0 . 94 . . Atlas-SNP CCDC125 202243 hgsc.bcm.edu hg19 5 68578778 68578778 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CCDC125 NM_176816 exon11 c.T1314C p.A438A GTTTGAAGCAGTG . 117.0 6.0 91.0 0.0 . 41 . . Atlas-SNP DDX46 9879 hgsc.bcm.edu hg19 5 134121198 134121198 + Silent SNP T T A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DDX46 NM_014829 exon11 c.T1386A p.T462T GATTACTAAAGAG . 167.0 34.0 156.0 0.0 . 77 . . Atlas-SNP PKD2L2 27039 hgsc.bcm.edu hg19 5 137257346 137257346 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PKD2L2 NM_014386 exon9 c.T1350C p.V450V AATTGTTCTTGGA . 121.0 5.0 114.0 0.0 . 68 . . Atlas-SNP KDM3B 51780 hgsc.bcm.edu hg19 5 137727543 137727543 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KDM3B NM_016604 exon8 c.T2222C p.L741P CAACTCTCTCCTC . 89.0 4.0 52.0 0.0 . 177 . . Atlas-SNP PCDHB15 56121 hgsc.bcm.edu hg19 5 140627100 140627100 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PCDHB15 NM_018935 exon1 c.C1954T p.R652C CCTCCGCGCTCGG . 95.0 4.0 65.0 0.0 . 138 . . Atlas-SNP G3BP1 10146 hgsc.bcm.edu hg19 5 151179526 151179526 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 G3BP1,rectum,carcinoma,0,1 G3BP1 NM_005754 exon9 c.G920A p.R307Q AACAACGAATAAA . 158.0 9.0 105.0 1.0 . 53 . . Atlas-SNP GABRB2 2561 hgsc.bcm.edu hg19 5 160763717 160763717 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GABRB2 NM_021911 exon7 c.G601A p.G201R TTACTCCTGTTAC . 78.0 4.0 70.0 0.0 . 161 . . Atlas-SNP STC2 8614 hgsc.bcm.edu hg19 5 172752906 172752906 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . STC2 NM_003714 exon2 c.A259G p.T87A GAAAAGTCATGCA . 131.0 6.0 73.0 0.0 . 59 . . Atlas-SNP CANX 821 hgsc.bcm.edu hg19 5 179133285 179133285 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CANX NM_001746 exon3 c.A198G p.T66T TCCAACAGGGGAA . 64.0 4.0 60.0 0.0 . 47 . . Atlas-SNP MAML1 9794 hgsc.bcm.edu hg19 5 179193646 179193646 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MAML1 NM_014757 exon2 c.G1635T p.Q545H TCCCCAGCAGCTG . 83.0 4.0 76.0 0.0 . 118 . . Atlas-SNP FAM8A1 51439 hgsc.bcm.edu hg19 6 17601073 17601073 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FAM8A1 NM_016255 exon1 c.C433T p.Q145X AGCCCCCAGCCCT . 70.0 28.0 44.0 0.0 . 26 . . Atlas-SNP KDM1B 221656 hgsc.bcm.edu hg19 6 18166515 18166515 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KDM1B NM_153042 exon6 c.A323G p.D108G GATATGACAAATA . 87.0 5.0 87.0 0.0 . 58 . . Atlas-SNP ZNF322 79692 hgsc.bcm.edu hg19 6 26638586 26638586 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001242797 exon5 c.A196G p.T66A CCCCAGTATGGGT . 397.0 92.0 390.0 0.0 . . . . Atlas-SNP NOTCH4 4855 hgsc.bcm.edu hg19 6 32188846 32188846 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NOTCH4 NM_004557 exon4 c.A708G p.G236G GCAGGGTCCTGCC . 92.0 4.0 76.0 0.0 . 201 . . Atlas-SNP COL11A2 1302 hgsc.bcm.edu hg19 6 33141808 33141808 + Silent SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . COL11A2 NM_080680 exon33 c.C2509A p.R837R CTCCCCGAGGCCC . 187.0 67.0 158.0 0.0 . 124 . . Atlas-SNP C6orf89 221477 hgsc.bcm.edu hg19 6 36882066 36882066 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . C6orf89 NM_152734 exon4 c.A431G p.D144G ACTTTGACCCCTG . 88.0 4.0 80.0 0.0 . 39 . . Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38874140 38874140 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNAH8 NM_001206927 exon63 c.A9305G p.E3102G AAGATGAGGCATT . 147.0 6.0 169.0 0.0 . 1239 . . Atlas-SNP TDRD6 221400 hgsc.bcm.edu hg19 6 46661339 46661339 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 TDRD6,NS,carcinoma,+1,1 TDRD6 NM_001168359 exon1 c.A5474G p.E1825G CTAATGAAACAAA . 41.0 2.0 34.0 0.0 . 205 . . Atlas-SNP BAI3 577 hgsc.bcm.edu hg19 6 70065719 70065719 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . BAI3 NM_001704 exon28 c.T3562C p.F1188L ACAGACTTTGAAA . 60.0 4.0 74.0 0.0 . 451 . . Atlas-SNP GABRR1 2569 hgsc.bcm.edu hg19 6 89890138 89890138 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GABRR1 NM_002042 exon9 c.A1019G p.Y340C TTGATGTAGGAGA . 93.0 4.0 106.0 0.0 . 63 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90513153 90513153 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MDN1 NM_014611 exon2 c.A223G p.R75G CATTCCTTTCCAG . 58.0 4.0 100.0 0.0 . 478 . . Atlas-SNP OSTM1 28962 hgsc.bcm.edu hg19 6 108375753 108375753 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 OSTM1,NS,carcinoma,0,1 OSTM1 NM_014028 exon3 c.A556G p.T186A ATACTGTGCTGTT . 30.0 2.0 49.0 0.0 . 22 . . Atlas-SNP TSPYL4 23270 hgsc.bcm.edu hg19 6 116574326 116574326 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TSPYL4 NM_021648 exon1 c.G846A p.L282L CACCTCCAAATTG . 69.0 4.0 112.0 0.0 . 18 . . Atlas-SNP BET3L 100128327 hgsc.bcm.edu hg19 6 116818183 116818183 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . BET3L NM_001139444 exon5 c.T480C p.S160S TGTCACACTGTCA . 68.0 4.0 127.0 0.0 . 18 . . Atlas-SNP RFX6 222546 hgsc.bcm.edu hg19 6 117198525 117198525 + Silent SNP T T C rs368582780 TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RFX6 NM_173560 exon1 c.T87C p.C29C CTGCTGTGTGCAG . 91.0 5.0 91.0 0.0 . 141 . . Atlas-SNP NCOA7 135112 hgsc.bcm.edu hg19 6 126203615 126203615 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NCOA7 NM_001199619 exon8 c.T617C p.V206A AAAGAGTCTTATC . 50.0 5.0 57.0 0.0 . 92 . . Atlas-SNP MAP3K5 4217 hgsc.bcm.edu hg19 6 136878915 136878915 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MAP3K5 NM_005923 exon30 c.T4106C p.F1369S TTTCGAAAGTCAA . 71.0 4.0 93.0 0.0 . 136 . . Atlas-SNP RAB32 10981 hgsc.bcm.edu hg19 6 146875606 146875606 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RAB32 NM_006834 exon3 c.A543G p.I181M AAACATAGAGGAA . 62.0 37.0 86.0 0.0 . 16 . . Atlas-SNP NUP43 348995 hgsc.bcm.edu hg19 6 150059861 150059861 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NUP43 NM_198887 exon5 c.A556G p.I186V TAAGAATCTCAGG . 58.0 4.0 72.0 0.0 . 32 . . Atlas-SNP PLEKHG1 57480 hgsc.bcm.edu hg19 6 151144808 151144808 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PLEKHG1 NM_001029884 exon15 c.A1466G p.Q489R ACATCCAAAAGGT . 31.0 16.0 54.0 0.0 . 97 . . Atlas-SNP PLEKHG1 57480 hgsc.bcm.edu hg19 6 151152053 151152053 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PLEKHG1 NM_001029884 exon16 c.T1806C p.G602G CTCTGGTCACAGG . 55.0 4.0 76.0 0.0 . 97 . . Atlas-SNP LPA 4018 hgsc.bcm.edu hg19 6 161016501 161016501 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LPA NM_005577 exon22 c.T3354C p.D1118D ACTGGGATCCATG . 86.0 4.0 151.0 0.0 . 237 . . Atlas-SNP SMOC2 64094 hgsc.bcm.edu hg19 6 168944304 168944304 + Splice_Site SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 SMOC2,NS,carcinoma,0,1 SMOC2 NM_022138 exon5 c.464-1G>T . CTTTTAGGTTCCG . 28.0 2.0 61.0 0.0 . 57 . . Atlas-SNP THSD7A 221981 hgsc.bcm.edu hg19 7 11446083 11446083 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . THSD7A NM_015204 exon21 c.G4081C p.G1361R TGGTCCCTTCTCC . 242.0 84.0 193.0 0.0 . 219 . . Atlas-SNP HIBADH 11112 hgsc.bcm.edu hg19 7 27672029 27672029 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . HIBADH NM_152740 exon3 c.T288C p.A96A TCTGTCAGCTTTT . 82.0 4.0 69.0 0.0 . 28 . . Atlas-SNP AMPH 273 hgsc.bcm.edu hg19 7 38431545 38431545 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . AMPH NM_001635 exon19 c.T1682C p.I561T GCACCTATAGTTA . 106.0 5.0 107.0 0.0 . 157 . . Atlas-SNP POLM 27434 hgsc.bcm.edu hg19 7 44119318 44119318 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 POLM,NS,carcinoma,0,1 POLM NM_013284 exon4 c.A494G p.E165G GCTGCCTCGGCCA . 68.0 3.0 47.0 0.0 . 50 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48318670 48318670 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ABCA13 NM_152701 exon18 c.C7879A p.Q2627K ATGAACCAATCTA . 54.0 20.0 63.0 0.0 . 1192 . . Atlas-SNP ZNF679 168417 hgsc.bcm.edu hg19 7 63727165 63727165 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF679 NM_153363 exon5 c.G1154A p.C385Y AAGAATGTGACAA . 40.0 4.0 38.0 0.0 . 80 . . Atlas-SNP HIP1 3092 hgsc.bcm.edu hg19 7 75174427 75174427 + Missense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . HIP1 NM_005338 exon26 c.C2619G p.I873M GGCTGAGATAAGT . 60.0 24.0 78.0 0.0 . 91 . . Atlas-SNP CCDC146 57639 hgsc.bcm.edu hg19 7 76866342 76866342 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CCDC146 NM_020879 exon3 c.A235G p.M79V GCCGTGATGAGGT . 98.0 4.0 102.0 0.0 . 87 . . Atlas-SNP PHTF2 57157 hgsc.bcm.edu hg19 7 77551975 77551975 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PHTF2 NM_001127359 exon9 c.A897G p.E299E TGATGAAGTCTCC . 90.0 4.0 92.0 0.0 . 104 . . Atlas-SNP PEX1 5189 hgsc.bcm.edu hg19 7 92123943 92123943 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PEX1 NM_000466 exon18 c.A2784G p.R928R CTGTGCTCTGGGA . 83.0 4.0 84.0 0.0 . 102 . . Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94056343 94056343 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . COL1A2 NM_000089 exon47 c.T3129C p.A1043A AGGTGCTCCTGGC . 91.0 5.0 88.0 0.0 . 240 . . Atlas-SNP CASD1 64921 hgsc.bcm.edu hg19 7 94164818 94164818 + Missense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CASD1 NM_022900 exon8 c.G826C p.E276Q CTTCCTGAATCGA . 192.0 77.0 190.0 0.0 . 70 . . Atlas-SNP ZNF394 84124 hgsc.bcm.edu hg19 7 99091412 99091412 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF394 NM_032164 exon3 c.A1426G p.K476E AGCTCTTCTCGCA . 219.0 68.0 187.0 0.0 . 48 . . Atlas-SNP TRIM4 89122 hgsc.bcm.edu hg19 7 99500933 99500933 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TRIM4 NM_033017 exon6 c.A827G p.E276G TGGATCTCACTCC . 85.0 4.0 89.0 0.0 . 33 . . Atlas-SNP TAF6 6878 hgsc.bcm.edu hg19 7 99711537 99711537 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TAF6 NM_001190415 exon3 c.T308C p.L103P GTGGTGAGCTTCT . 147.0 6.0 152.0 0.0 . 55 . . Atlas-SNP STAG3 10734 hgsc.bcm.edu hg19 7 99808723 99808723 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . STAG3 NM_012447 exon30 c.T3328C p.S1110P CTCACCTCCACAG . 113.0 7.0 86.0 0.0 . 121 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100680430 100680430 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MUC17 NM_001040105 exon3 c.T5733C p.A1911A AACTGCTGACGGT . 97.0 4.0 130.0 0.0 . 804 . . Atlas-SNP CUX1 1523 hgsc.bcm.edu hg19 7 101840321 101840321 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CUX1 NM_001202543 exon15 c.A1663G p.S555G GCTGGGAGCGTCT . 80.0 4.0 50.0 0.0 . 253 . . Atlas-SNP DNAJC2 27000 hgsc.bcm.edu hg19 7 102957429 102957429 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNAJC2 NM_014377 exon13 c.G1275A p.E425E CTCTTTCTCTTTT . 232.0 89.0 280.0 1.0 . 46 . . Atlas-SNP PRRT4 401399 hgsc.bcm.edu hg19 7 127991409 127991409 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PRRT4 NM_001174164 exon6 c.A2201G p.E734G AGGGCCTCCTCGA . 86.0 4.0 56.0 0.0 . 31 . . Atlas-SNP CCDC136 64753 hgsc.bcm.edu hg19 7 128445476 128445476 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CCDC136 NM_001201372 exon7 c.T960C p.S320S AGAGTCTCAGACT . 86.0 4.0 70.0 0.0 . 170 . . Atlas-SNP CPA5 93979 hgsc.bcm.edu hg19 7 130007288 130007288 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CPA5 NM_080385 exon11 c.C914T p.A305V TGGCTGCCATAGT . 299.0 91.0 269.0 0.0 . 61 . . Atlas-SNP WDR91 29062 hgsc.bcm.edu hg19 7 134870994 134870994 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . WDR91 NM_014149 exon15 c.A2153G p.D718G CTCCAGTCCACGG . 117.0 5.0 98.0 0.0 . 82 . . Atlas-SNP CREB3L2 64764 hgsc.bcm.edu hg19 7 137586166 137586166 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CREB3L2 NM_194071 exon8 c.T977C p.V326A GACTCCACTCTAC . 89.0 5.0 77.0 0.0 . 62 . . Atlas-SNP UBN2 254048 hgsc.bcm.edu hg19 7 138944069 138944069 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . UBN2 NM_173569 exon5 c.A858G p.E286E AGAGGAAGGGGAA . 86.0 5.0 100.0 0.0 . 90 . . Atlas-SNP GIMAP4 55303 hgsc.bcm.edu hg19 7 150269812 150269812 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GIMAP4 NM_018326 exon3 c.A654G p.E218E CAAGGAAGGCTGC . 134.0 7.0 90.0 0.0 . 61 . . Atlas-SNP NOS3 4846 hgsc.bcm.edu hg19 7 150704003 150704003 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NOS3 NM_000603 exon16 c.T1847C p.I616T ACAGCATCTCCTG . 207.0 9.0 189.0 0.0 . 131 . . Atlas-SNP CHPF2 54480 hgsc.bcm.edu hg19 7 150935431 150935431 + Silent SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CHPF2 NM_019015 exon4 c.G1983C p.G661G TATAGGGGGGAGA . 88.0 4.0 71.0 0.0 . 52 . . Atlas-SNP SMARCD3 6604 hgsc.bcm.edu hg19 7 150939255 150939255 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SMARCD3 NM_001003801 exon6 c.G643A p.D215N AAAGATCTTTGTC . 124.0 5.0 99.0 0.0 . 92 . . Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151919143 151919143 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MLL3 NM_170606 exon22 c.T3442C p.S1148P AGTCTGAGGAAGG . 63.0 4.0 76.0 0.0 . 1564 . . Atlas-SNP DEFA4 1669 hgsc.bcm.edu hg19 8 6794324 6794324 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DEFA4 NM_001925 exon2 c.A98G p.E33G CGCTGCTCCTGGC . 118.0 5.0 74.0 0.0 . 19 . . Atlas-SNP XPO7 23039 hgsc.bcm.edu hg19 8 21848320 21848320 + Splice_Site SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . XPO7 NM_015024 exon18 c.1933-2A>G . TTCAATAGAGCGA . 112.0 5.0 56.0 0.0 . 79 . . Atlas-SNP NEFM 4741 hgsc.bcm.edu hg19 8 24775101 24775101 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NEFM NM_005382 exon3 c.A1733G p.E578G AAGGAGAGGAAGC . 105.0 5.0 107.0 0.0 . 115 . . Atlas-SNP NUGGC 389643 hgsc.bcm.edu hg19 8 27887829 27887829 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001010906 exon16 c.A2015G p.E672G CCACCTTCGTAAC . 95.0 4.0 49.0 0.0 . . . . Atlas-SNP ZNF395 55893 hgsc.bcm.edu hg19 8 28210089 28210089 + Splice_Site SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF395 NM_018660 exon7 c.920+1G>A . CACATACCCCAGA . 106.0 31.0 51.0 0.0 . 54 . . Atlas-SNP FUT10 84750 hgsc.bcm.edu hg19 8 33230111 33230111 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FUT10 NM_032664 exon5 c.T1424C p.L475P AATACTAGGCCCC . 140.0 6.0 121.0 0.0 . 62 . . Atlas-SNP TTI2 80185 hgsc.bcm.edu hg19 8 33358008 33358008 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001265581 exon7 c.A1260G p.R420R GGAAACTCTGGAA . 92.0 6.0 70.0 0.0 . . . . Atlas-SNP ADAM32 203102 hgsc.bcm.edu hg19 8 39091581 39091581 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ADAM32 NM_145004 exon16 c.T1798C p.S600P AATGGCTCTCAGT . 81.0 4.0 69.0 0.0 . 70 . . Atlas-SNP IDO2 169355 hgsc.bcm.edu hg19 8 39836687 39836687 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IDO2 NM_194294 exon4 c.A336G p.G112G GGAAGGAGAGGCG . 128.0 6.0 62.0 0.0 . 78 . . Atlas-SNP CHRNA6 8973 hgsc.bcm.edu hg19 8 42611844 42611844 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CHRNA6 NM_004198 exon5 c.T498C p.P166P ATCAAAAGGGAAA . 94.0 4.0 74.0 0.0 . 60 . . Atlas-SNP THAP1 55145 hgsc.bcm.edu hg19 8 42693397 42693397 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . THAP1 NM_018105 exon3 c.G350T p.G117V AGTAATCCAATAG . 124.0 66.0 135.0 0.0 . 18 . . Atlas-SNP GDAP1 54332 hgsc.bcm.edu hg19 8 75262703 75262703 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 GDAP1,ear,malignant_melanoma,0,1 GDAP1 NM_018972 exon1 c.G7A p.E3K ATGGCTGAGAGGC . 50.0 2.0 47.0 0.0 . 36 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77617351 77617351 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZFHX4 NM_024721 exon2 c.C1028T p.S343F CCACTTCTGTTTA . 64.0 5.0 57.0 0.0 . 878 . . Atlas-SNP RAD54B 25788 hgsc.bcm.edu hg19 8 95384468 95384468 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RAD54B NM_012415 exon15 c.T2663C p.F888S TCAAGAAAAGGAT . 92.0 4.0 76.0 0.0 . 88 . . Atlas-SNP FSBP 100861412 hgsc.bcm.edu hg19 8 95449096 95449096 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FSBP NM_001256141 exon1 c.A1G p.M1V CTACCATTGTTCT . 189.0 50.0 143.0 0.0 . 1 . . Atlas-SNP SPAG1 6674 hgsc.bcm.edu hg19 8 101252681 101252681 + Missense_Mutation SNP G G C rs150966245 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 SPAG1,pharynx,carcinoma,0,1 SPAG1 NM_003114 exon18 c.G2331C p.M777I CTCCATGGGATGC . 91.0 0.0 65.0 0.0 . 80 . G|0.997;A|0.003 Atlas-SNP LRP12 29967 hgsc.bcm.edu hg19 8 105503084 105503084 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LRP12 NM_013437 exon7 c.C2397T p.A799A ATCTGAGGCAAGA . 159.0 37.0 131.0 0.0 . 124 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113585826 113585826 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 CSMD3_ENST00000343508,NS,carcinoma,0,2 CSMD3 NM_198123 exon24 c.C3946A p.R1316S GTCCGCGCATAGA . 131.0 34.0 116.0 0.0 . 2325 . . Atlas-SNP RNF139 11236 hgsc.bcm.edu hg19 8 125498418 125498418 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RNF139 NM_007218 exon2 c.G528T p.E176D CAGAGAGACTTTA . 192.0 104.0 120.0 0.0 . 57 . . Atlas-SNP CYP11B2 1585 hgsc.bcm.edu hg19 8 143996601 143996601 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CYP11B2 NM_000498 exon3 c.G456C p.K152N CACGGCCTTGGGC . 294.0 23.0 194.0 0.0 . 107 . . Atlas-SNP COMMD5 28991 hgsc.bcm.edu hg19 8 146076709 146076709 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 COMMD5,colon,carcinoma,0,2 COMMD5 NM_001081004 exon2 c.G15A p.G5G TGCAGCCCCCACA . 386.0 0.0 249.0 0.0 . 18 . . Atlas-SNP DOCK8 81704 hgsc.bcm.edu hg19 9 334272 334272 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DOCK8 NM_203447 exon11 c.C1173G p.C391W CTTCTGCCAGCGT . 118.0 5.0 86.0 0.0 . 401 . . Atlas-SNP KANK1 23189 hgsc.bcm.edu hg19 9 713074 713074 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KANK1 NM_001256876 exon7 c.T2308C p.Y770H GACAACTATCTGG . 106.0 40.0 109.0 0.0 . 231 . . Atlas-SNP MLLT3 4300 hgsc.bcm.edu hg19 9 20620823 20620823 + Missense_Mutation SNP T T G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MLLT3 NM_004529 exon2 c.A23C p.Q8P TTCACCTGCACGG . 84.0 5.0 71.0 0.0 . 125 . . Atlas-SNP DDX58 23586 hgsc.bcm.edu hg19 9 32466317 32466317 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DDX58 NM_014314 exon16 c.A2308G p.T770A CCCATGTCTGAAG . 110.0 5.0 115.0 0.0 . 82 . . Atlas-SNP FXN 2395 hgsc.bcm.edu hg19 9 71661353 71661353 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FXN NM_000144 exon2 c.T218C p.V73A AGAGTGTCTATTT . 115.0 5.0 105.0 0.0 . 9 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79321218 79321218 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PRUNE2 NM_015225 exon8 c.A5972G p.E1991G TGACCTTCATTAG . 87.0 4.0 99.0 0.0 . 331 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79322807 79322807 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PRUNE2 NM_015225 exon8 c.G4383A p.K1461K AAGATCCTTTTCA . 160.0 45.0 141.0 0.0 . 331 . . Atlas-SNP SPATA31E1 286234 hgsc.bcm.edu hg19 9 90501957 90501957 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_178828 exon4 c.T2555C p.L852P CAGACCTCCAGTC . 111.0 7.0 67.0 0.0 . . . . Atlas-SNP NFIL3 4783 hgsc.bcm.edu hg19 9 94171681 94171681 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NFIL3 NM_005384 exon2 c.T1336C p.S446P TGAGTGAGACAAC . 206.0 9.0 203.0 0.0 . 43 . . Atlas-SNP SMC2 10592 hgsc.bcm.edu hg19 9 106896730 106896730 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SMC2 NM_006444 exon23 c.T3143C p.L1048P CTACTCTTTTGCC . 117.0 5.0 98.0 0.0 . 127 . . Atlas-SNP KIAA0368 23392 hgsc.bcm.edu hg19 9 114213757 114213757 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIAA0368 NM_001080398 exon4 c.T635C p.L212P GGAGGAAGGAATT . 60.0 4.0 101.0 0.0 . 144 . . Atlas-SNP DFNB31 25861 hgsc.bcm.edu hg19 9 117186678 117186678 + Missense_Mutation SNP C C G rs117352600 bycluster;by1000genomes;alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 DFNB31,NS,carcinoma,0,1 DFNB31 NM_001173425 exon6 c.G1352C p.G451A CTGCCACCACGGT . 235.0 0.0 198.0 0.0 . 100 . C|0.997;T|0.003 Atlas-SNP ASTN2 23245 hgsc.bcm.edu hg19 9 119976991 119976991 + Missense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 ASTN2,right_upper_lobe,carcinoma,+2,1 ASTN2 NM_014010 exon3 c.C661G p.L221V ACACCAGCAGCAG . 83.0 4.0 61.0 0.0 . 307 . . Atlas-SNP GOLGA2 2801 hgsc.bcm.edu hg19 9 131022366 131022366 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GOLGA2 NM_004486 exon18 c.C1780T p.L594L CCTTCAGCTCGCT . 40.0 8.0 33.0 0.0 . 69 . . Atlas-SNP PPAPDC3 84814 hgsc.bcm.edu hg19 9 134183331 134183331 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PPAPDC3 NM_032728 exon2 c.C473T p.T158M TCATGACGGTGGC . 31.0 9.0 11.0 0.0 . 24 . . Atlas-SNP RAPGEF1 2889 hgsc.bcm.edu hg19 9 134497361 134497361 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RAPGEF1 NM_198679 exon11 c.A1730G p.E577G TAGTCCTCCAGCA . 215.0 9.0 167.0 0.0 . 126 . . Atlas-SNP SOHLH1 402381 hgsc.bcm.edu hg19 9 138590847 138590847 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SOHLH1 NM_001012415 exon2 c.A191G p.E64G CTGCGCTCCCTCT . 171.0 7.0 109.0 0.0 . 70 . . Atlas-SNP GPSM1 26086 hgsc.bcm.edu hg19 9 139232412 139232412 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPSM1 NM_015597 exon6 c.A812G p.Y271C CCGAGTACTACAA . 99.0 4.0 61.0 0.0 . 50 . . Atlas-SNP NET1 10276 hgsc.bcm.edu hg19 10 5496244 5496244 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NET1 NM_001047160 exon9 c.C785T p.A262V TGAATGCCTACAG . 82.0 4.0 108.0 0.0 . 82 . . Atlas-SNP NSUN6 221078 hgsc.bcm.edu hg19 10 18937549 18937549 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NSUN6 NM_182543 exon2 c.A101G p.E34G TCTGCTTCTTGTT . 97.0 4.0 111.0 0.0 . 46 . . Atlas-SNP TMEM72 643236 hgsc.bcm.edu hg19 10 45429185 45429185 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TMEM72 NM_001123376 exon4 c.T310C p.F104L GCCTGCTTCCTCC . 142.0 6.0 108.0 0.0 . 25 . . Atlas-SNP ZNF488 118738 hgsc.bcm.edu hg19 10 48371474 48371474 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF488 NM_153034 exon2 c.A942G p.E314E GAGAGAAGAGGCC . 95.0 4.0 55.0 0.0 . 38 . . Atlas-SNP SGMS1 259230 hgsc.bcm.edu hg19 10 52087035 52087035 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SGMS1 NM_147156 exon8 c.T671C p.L224P CGATACAGGTACA . 112.0 5.0 91.0 0.0 . 40 . . Atlas-SNP BICC1 80114 hgsc.bcm.edu hg19 10 60549107 60549107 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . BICC1 NM_001080512 exon7 c.A686G p.Q229R CTATTCAGCATAT . 175.0 8.0 202.0 0.0 . 121 . . Atlas-SNP CHST3 9469 hgsc.bcm.edu hg19 10 73767842 73767842 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CHST3 NM_004273 exon3 c.C1053T p.S351S CCTGTCCGCGGAG . 39.0 19.0 28.0 0.0 . 36 . . Atlas-SNP IFIT1B 439996 hgsc.bcm.edu hg19 10 91144454 91144454 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IFIT1B NM_001010987 exon2 c.A1384G p.R462G TATGAGAGGGCTC . 134.0 6.0 105.0 0.0 . 39 . . Atlas-SNP KIF20B 9585 hgsc.bcm.edu hg19 10 91522426 91522426 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIF20B NM_016195 exon29 c.T4703C p.V1568A GTGAAGTGTCAAC . 86.0 4.0 91.0 0.0 . 191 . . Atlas-SNP KIF20B 9585 hgsc.bcm.edu hg19 10 91522431 91522431 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIF20B NM_016195 exon29 c.A4708G p.T1570A GTGTCAACAGAAA . 91.0 4.0 95.0 0.0 . 191 . . Atlas-SNP TNKS2 80351 hgsc.bcm.edu hg19 10 93609348 93609348 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TNKS2 NM_025235 exon20 c.A2691G p.E897E GAGAGAACAGGTG . 71.0 4.0 104.0 0.0 . 103 . . Atlas-SNP TLX1NB 100038246 hgsc.bcm.edu hg19 10 102849600 102849600 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001085398 exon3 c.T63C p.S21S AAGGAGAGAGTGC . 78.0 4.0 75.0 0.0 . . . . Atlas-SNP USMG5 84833 hgsc.bcm.edu hg19 10 105152185 105152185 + Nonsense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . USMG5 NM_001206427 exon3 c.C30A p.Y10X GAACTGGTATTGC . 117.0 6.0 98.0 0.0 . 5 . . Atlas-SNP CUZD1 50624 hgsc.bcm.edu hg19 10 124593456 124593456 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CUZD1 NM_022034 exon8 c.A1383G p.G461G ACTACATCTGGAA . 144.0 7.0 121.0 0.0 . 82 . . Atlas-SNP PSTK 118672 hgsc.bcm.edu hg19 10 124742793 124742793 + Missense_Mutation SNP T T A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 PSTK,NS,lymphoid_neoplasm,0,1 PSTK NM_153336 exon3 c.T514A p.L172M GATTCGTTGGGCT . 96.0 0.0 109.0 0.0 . 34 . . Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129899525 129899525 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MKI67 NM_002417 exon14 c.G9702A p.K3234K TACCTTCTTTGGA . 103.0 5.0 77.0 0.0 . 363 . . Atlas-SNP LRRC27 80313 hgsc.bcm.edu hg19 10 134151182 134151182 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LRRC27 NM_001143757 exon3 c.T324C p.S108S TCCTTCTGGGATT . 104.0 5.0 85.0 0.0 . 64 . . Atlas-SNP BET1L 51272 hgsc.bcm.edu hg19 11 205324 205324 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . BET1L NM_001098787 exon4 c.T314C p.F105S GACAAGAAGTAGG . 123.0 5.0 97.0 0.0 . 7 . . Atlas-SNP MRGPRE 116534 hgsc.bcm.edu hg19 11 3249741 3249741 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MRGPRE NM_001039165 exon2 c.A289G p.T97A GGCTGGTCTGCAC . 134.0 6.0 73.0 0.0 . 35 . . Atlas-SNP SMPD1 6609 hgsc.bcm.edu hg19 11 6412065 6412065 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SMPD1 NM_000543 exon1 c.G237A p.R79R GCCCCGGCTCCGA . 89.0 23.0 88.0 0.0 . 108 . . Atlas-SNP RBMXL2 27288 hgsc.bcm.edu hg19 11 7111267 7111267 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RBMXL2 NM_014469 exon1 c.G916T p.G306C GGAGGAGGCCGCT . 109.0 48.0 86.0 0.0 . 47 . . Atlas-SNP SCUBE2 57758 hgsc.bcm.edu hg19 11 9052315 9052315 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SCUBE2 NM_020974 exon17 c.T2160C p.C720C GGTTTCACAGTCC . 58.0 4.0 64.0 0.0 . 102 . . Atlas-SNP SCUBE2 57758 hgsc.bcm.edu hg19 11 9082018 9082018 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SCUBE2 NM_001170690 exon8 c.A904G p.T302A CACCTGTCGAAGT . 87.0 6.0 72.0 0.0 . 102 . . Atlas-SNP WEE1 7465 hgsc.bcm.edu hg19 11 9598196 9598196 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . WEE1 NM_003390 exon4 c.T1009C p.S337P GCGGGCTCTGTTG . 149.0 6.0 157.0 0.0 . 54 . . Atlas-SNP SWAP70 23075 hgsc.bcm.edu hg19 11 9761767 9761767 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SWAP70 NM_015055 exon9 c.T1228C p.S410P AAGTCCTCTGAAC . 106.0 5.0 60.0 0.0 . 40 . . Atlas-SNP KCNJ11 3767 hgsc.bcm.edu hg19 11 17409184 17409184 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KCNJ11 NM_000525 exon1 c.A455G p.Q152R ATGTTCTGCACGA . 84.0 4.0 63.0 0.0 . 39 . . Atlas-SNP PRMT3 10196 hgsc.bcm.edu hg19 11 20409581 20409581 + Silent SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PRMT3 NM_005788 exon2 c.G45T p.V15V CGCTGTGGAGAAT . 212.0 76.0 185.0 0.0 . 50 . . Atlas-SNP FANCF 2188 hgsc.bcm.edu hg19 11 22646565 22646565 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FANCF NM_022725 exon1 c.T792C p.T264T GCGGCTAGTCACT . 108.0 33.0 67.0 0.0 . 24 . . Atlas-SNP BDNF 627 hgsc.bcm.edu hg19 11 27695819 27695819 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . BDNF NM_001143810 exon2 c.A13G p.T5A AACTGGTGGCTCC . 94.0 4.0 91.0 0.0 . 63 . . Atlas-SNP TTC17 55761 hgsc.bcm.edu hg19 11 43411338 43411338 + Missense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TTC17 NM_018259 exon3 c.G386C p.G129A ATGATGGCACATA . 198.0 57.0 215.0 0.0 . 112 . . Atlas-SNP ACCS 84680 hgsc.bcm.edu hg19 11 44102738 44102738 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ACCS NM_032592 exon12 c.A979G p.M327V TTCGGGATGTCTG . 140.0 6.0 101.0 0.0 . 64 . . Atlas-SNP CKAP5 9793 hgsc.bcm.edu hg19 11 46818446 46818446 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CKAP5 NM_001008938 exon12 c.A1383G p.E461E CAATGCTTCAAAT . 145.0 6.0 142.0 0.0 . 134 . . Atlas-SNP FNBP4 23360 hgsc.bcm.edu hg19 11 47758184 47758184 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FNBP4 NM_015308 exon9 c.A1565G p.E522G TGTTCTTCTTCTA . 81.0 4.0 87.0 0.0 . 99 . . Atlas-SNP OR4C15 81309 hgsc.bcm.edu hg19 11 55322070 55322070 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . OR4C15 NM_001001920 exon1 c.A288G p.L96L CATGCTAATTGTA . 77.0 4.0 59.0 0.0 . 145 . . Atlas-SNP OR5F1 338674 hgsc.bcm.edu hg19 11 55761365 55761365 + Missense_Mutation SNP G G A rs377087548 alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . OR5F1 NM_003697 exon1 c.C737T p.T246I ATGGCTGTCAGGT . 84.0 34.0 92.0 0.0 . 116 . . Atlas-SNP OR5T2 219464 hgsc.bcm.edu hg19 11 56000212 56000212 + Missense_Mutation SNP T T A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . OR5T2 NM_001004746 exon1 c.A450T p.E150D AAAGCATTCTGTG . 208.0 77.0 177.0 0.0 . 107 . . Atlas-SNP FAM111B 374393 hgsc.bcm.edu hg19 11 58892143 58892143 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FAM111B NM_198947 exon4 c.A573G p.I191M TGCTATAGGAAGG . 125.0 5.0 119.0 0.0 . 84 . . Atlas-SNP DAGLA 747 hgsc.bcm.edu hg19 11 61502340 61502340 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DAGLA NM_006133 exon10 c.A994G p.R332G CCTGCGAGGCCGC . 113.0 5.0 86.0 0.0 . 109 . . Atlas-SNP SLC22A20 440044 hgsc.bcm.edu hg19 11 64981537 64981537 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC22A20 NM_001004326 exon1 c.C194T p.S65L ACGACTCGGGGGC . 63.0 20.0 65.0 0.0 . 36 . . Atlas-SNP LTBP3 4054 hgsc.bcm.edu hg19 11 65306671 65306671 + Silent SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LTBP3 NM_001130144 exon28 c.C3792A p.R1264R CAGCCCGCGCTGG . 70.0 4.0 55.0 0.0 . 55 . . Atlas-SNP EHBP1L1 254102 hgsc.bcm.edu hg19 11 65347712 65347712 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EHBP1L1 NM_001099409 exon5 c.T473C p.L158P TGCTGCTGCGGGA . 146.0 6.0 101.0 0.0 . 64 . . Atlas-SNP TPCN2 219931 hgsc.bcm.edu hg19 11 68835002 68835002 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TPCN2 NM_139075 exon8 c.C758G p.T253S GGCTGACCTACTT . 56.0 11.0 46.0 0.0 . 63 . . Atlas-SNP TENM4 26011 hgsc.bcm.edu hg19 11 78498080 78498080 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 ODZ4_ENST00000278550,NS,carcinoma,0,2 . NM_001098816 exon16 c.C2228T p.T743I CGGCAGGTGCCCC . 74.0 3.0 58.0 0.0 . . . . Atlas-SNP SLC36A4 120103 hgsc.bcm.edu hg19 11 92917643 92917643 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC36A4 NM_152313 exon3 c.A223G p.T75A GGCCAGTTCCAAT . 68.0 4.0 64.0 0.0 . 61 . . Atlas-SNP KIAA1377 57562 hgsc.bcm.edu hg19 11 101833708 101833708 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIAA1377 NM_020802 exon6 c.T1942C p.S648P AGTCATTCACTGA . 96.0 4.0 95.0 0.0 . 111 . . Atlas-SNP IL18 3606 hgsc.bcm.edu hg19 11 112020884 112020884 + Nonsense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IL18 NM_001562 exon4 c.C137G p.S46X ATGACTGATAATT . 99.0 36.0 94.0 0.0 . 10 . . Atlas-SNP NCAM1 4684 hgsc.bcm.edu hg19 11 113105812 113105812 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NCAM1 NM_001242607 exon16 c.T1829C p.V610A ACGCCGTAAGGCT . 95.0 4.0 83.0 0.0 . 372 . . Atlas-SNP USP28 57646 hgsc.bcm.edu hg19 11 113683141 113683141 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . USP28 NM_020886 exon16 c.G1829A p.R610Q CTCTGTCGGGGTT . 94.0 4.0 92.0 0.0 . 135 . . Atlas-SNP SLC37A4 2542 hgsc.bcm.edu hg19 11 118896697 118896697 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC37A4 NM_001467 exon8 c.G964A p.V322M TGGTCACTGTTAC . 139.0 6.0 121.0 0.0 . 19 . . Atlas-SNP SRPR 6734 hgsc.bcm.edu hg19 11 126135040 126135040 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SRPR NM_003139 exon11 c.T1339C p.F447L CACTGAAGCCATT . 85.0 4.0 72.0 0.0 . 60 . . Atlas-SNP ST3GAL4 6484 hgsc.bcm.edu hg19 11 126279255 126279255 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ST3GAL4 NM_001254757 exon9 c.A720G p.A240A GATTGCAGCTGAC . 119.0 7.0 114.0 0.0 . 25 . . Atlas-SNP TP53AIP1 63970 hgsc.bcm.edu hg19 11 128807456 128807456 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TP53AIP1 NM_001251964 exon2 c.A258G p.T86T AGATGCTGTCACT . 108.0 5.0 51.0 0.0 . 12 . . Atlas-SNP APLP2 334 hgsc.bcm.edu hg19 11 130011950 130011950 + Missense_Mutation SNP T T G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . APLP2 NM_001642 exon17 c.T2171G p.I724S GCACCATCAGCCA . 111.0 33.0 91.0 0.0 . 71 . . Atlas-SNP NTM 50863 hgsc.bcm.edu hg19 11 132184537 132184537 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NTM NM_001144059 exon6 c.A874G p.N292D TATGGGAACTACA . 97.0 4.0 86.0 0.0 . 253 . . Atlas-SNP FBXL14 144699 hgsc.bcm.edu hg19 12 1702306 1702306 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FBXL14 NM_152441 exon1 c.T927C p.S309S GGAGAGAGACTTG . 42.0 4.0 60.0 0.0 . 19 . . Atlas-SNP CLEC9A 283420 hgsc.bcm.edu hg19 12 10213810 10213810 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CLEC9A NM_207345 exon6 c.A257G p.K86R AATGGAAGAGAAG . 82.0 4.0 101.0 0.0 . 41 . . Atlas-SNP TMEM52B 120939 hgsc.bcm.edu hg19 12 10342627 10342627 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_153022 exon4 c.T380C p.F127S GTCGCTTCACAGT . 99.0 4.0 110.0 0.0 . . . . Atlas-SNP SLCO1B3 28234 hgsc.bcm.edu hg19 12 21015742 21015742 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLCO1B3 NM_019844 exon8 c.A681G p.G227G ACTGGGATCTCTG . 91.0 6.0 208.0 0.0 . 151 . . Atlas-SNP BHLHE41 79365 hgsc.bcm.edu hg19 12 26276611 26276611 + Missense_Mutation SNP T T C rs75677280 bycluster;alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . BHLHE41 NM_030762 exon4 c.A298G p.T100A AGGCGGTTAAAGC . 81.0 4.0 102.0 0.0 . 20 . . Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26811016 26811016 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ITPR2 NM_002223 exon17 c.T1934C p.I645T ACAGGGATAGCAG . 73.0 4.0 110.0 0.0 . 270 . . Atlas-SNP SCAF11 9169 hgsc.bcm.edu hg19 12 46320825 46320825 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SCAF11 NM_004719 exon11 c.A2659G p.T887A TAGAAGTTTCTCT . 93.0 4.0 88.0 0.0 . 145 . . Atlas-SNP SCAF11 9169 hgsc.bcm.edu hg19 12 46357973 46357973 + Splice_Site SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SCAF11 . . . . GTTTCCTATAAGA . 23.0 13.0 19.0 0.0 . 145 . . Atlas-SNP CERS5 91012 hgsc.bcm.edu hg19 12 50536965 50536965 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_147190 exon3 c.A326G p.E109G AGGCCCTCCAGCC . 130.0 6.0 94.0 0.0 . . . . Atlas-SNP SLC4A8 9498 hgsc.bcm.edu hg19 12 51856125 51856125 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC4A8 NM_001039960 exon10 c.A1133G p.E378G CAAAAGAGCGAGA . 102.0 5.0 92.0 0.0 . 292 . . Atlas-SNP SP1 6667 hgsc.bcm.edu hg19 12 53800445 53800445 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SP1 NM_138473 exon4 c.A1752G p.E584E AGAGGAAGGAGAA . 86.0 4.0 75.0 0.0 . 57 . . Atlas-SNP AMHR2 269 hgsc.bcm.edu hg19 12 53823319 53823319 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . AMHR2 NM_020547 exon8 c.A1050G p.G350G CATTGGAGACCTG . 138.0 7.0 132.0 0.0 . 61 . . Atlas-SNP OR6C1 390321 hgsc.bcm.edu hg19 12 55714409 55714409 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . OR6C1 NM_001005182 exon1 c.A26G p.E9G TAACAGAGTTTAT . 74.0 4.0 86.0 0.0 . 58 . . Atlas-SNP DNAJC14 85406 hgsc.bcm.edu hg19 12 56222422 56222422 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNAJC14 NM_032364 exon2 c.A21G p.G7G TCTTTCTCCGGGG . 91.0 4.0 104.0 0.0 . 52 . . Atlas-SNP PRIM1 5557 hgsc.bcm.edu hg19 12 57135246 57135246 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PRIM1 NM_000946 exon9 c.A955G p.S319G AAGGGCTCTTCAG . 103.0 6.0 89.0 0.0 . 22 . . Atlas-SNP MYO1A 4640 hgsc.bcm.edu hg19 12 57437910 57437910 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MYO1A NM_005379 exon9 c.T724C p.S242P AGCTGGAGGCGTC . 202.0 9.0 157.0 0.0 . 122 . . Atlas-SNP AGAP2 116986 hgsc.bcm.edu hg19 12 58123479 58123479 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . AGAP2 NM_001122772 exon13 c.A2500G p.R834G TCCTCCTCTGCTT . 108.0 7.0 100.0 0.0 . 167 . . Atlas-SNP C12orf56 115749 hgsc.bcm.edu hg19 12 64664453 64664453 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . C12orf56 NM_001170633 exon12 c.T1626C p.G542G TGAAAGACCCCTC . 99.0 4.0 72.0 0.0 . 42 . . Atlas-SNP ATP2B1 490 hgsc.bcm.edu hg19 12 90015351 90015351 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ATP2B1 NM_001001323 exon9 c.A1562G p.N521S GCACAATTCACAG . 72.0 4.0 76.0 0.0 . 191 . . Atlas-SNP ALDH1L2 160428 hgsc.bcm.edu hg19 12 105424187 105424187 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 ALDH1L2,rectum,carcinoma,0,1 ALDH1L2 NM_001034173 exon21 c.G2431A p.V811M TGAACACGGTCGG . 84.0 4.0 53.0 0.0 . 71 . . Atlas-SNP MYO1H 283446 hgsc.bcm.edu hg19 12 109834370 109834370 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MYO1H NM_001101421 exon3 c.T424C p.S142P CTGTTCTCCAACC . 93.0 4.0 58.0 0.0 . 98 . . Atlas-SNP CLIP1 6249 hgsc.bcm.edu hg19 12 122826186 122826186 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CLIP1 NM_001247997 exon11 c.G1565A p.R522K TGTACTCTCAATG . 66.0 4.0 69.0 0.0 . 126 . . Atlas-SNP ZCCHC8 55596 hgsc.bcm.edu hg19 12 122958449 122958449 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZCCHC8 NM_017612 exon14 c.T1719C p.S573S CTTTTCAGATGTT . 90.0 4.0 60.0 0.0 . 56 . . Atlas-SNP RILPL1 353116 hgsc.bcm.edu hg19 12 123983122 123983122 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RILPL1 NM_178314 exon4 c.A770G p.E257G CTGTGCTCCCCCT . 179.0 8.0 106.0 0.0 . 23 . . Atlas-SNP POLE 5426 hgsc.bcm.edu hg19 12 133219191 133219191 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . POLE NM_006231 exon37 c.A4853G p.N1618S CCATAGTTGATCT . 140.0 40.0 77.0 0.0 . 416 . . Atlas-SNP PARP4 143 hgsc.bcm.edu hg19 13 25017789 25017789 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PARP4 NM_006437 exon28 c.A3446G p.E1149G CAAACCTCATGAC . 86.0 5.0 64.0 0.0 . 142 . . Atlas-SNP ATP12A 479 hgsc.bcm.edu hg19 13 25274939 25274939 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 ATP12A,colon,carcinoma,0,3 ATP12A NM_001185085 exon13 c.A1778G p.D593G CATTTGACATAGA . 140.0 60.0 134.0 0.0 . 172 . . Atlas-SNP CENPJ 55835 hgsc.bcm.edu hg19 13 25478135 25478135 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CENPJ NM_018451 exon8 c.A2754G p.E918E AAACTTTTCTATT . 110.0 5.0 110.0 0.0 . 116 . . Atlas-SNP AMER2 219287 hgsc.bcm.edu hg19 13 25745556 25745556 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_152704 exon1 c.T202C p.F68L ATTTGAAGGCAGC . 93.0 4.0 77.0 0.0 . . . . Atlas-SNP FLT3 2322 hgsc.bcm.edu hg19 13 28588598 28588598 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FLT3 NM_004119 exon23 c.A2850G p.A950A TTCTTCTGCATCT . 95.0 4.0 102.0 0.0 . 15525 . . Atlas-SNP POSTN 10631 hgsc.bcm.edu hg19 13 38153044 38153044 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . POSTN NM_006475 exon15 c.A1899G p.T633T AACAGGTGTGTCT . 77.0 4.0 97.0 0.0 . 161 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39343836 39343836 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FREM2 NM_207361 exon4 c.T5532C p.D1844D GAGTGATGGGGAG . 302.0 115.0 257.0 0.0 . 385 . . Atlas-SNP LACC1 144811 hgsc.bcm.edu hg19 13 44455553 44455553 + Missense_Mutation SNP A A C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001128303 exon2 c.A432C p.K144N TTTTAAACAGTCC . 84.0 4.0 79.0 0.0 . . . . Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77740659 77740659 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MYCBP2 NM_015057 exon41 c.A6145G p.T2049A CGATTGTCATCCA . 150.0 6.0 119.0 0.0 . 1029 . . Atlas-SNP RNF219 79596 hgsc.bcm.edu hg19 13 79213208 79213208 + Splice_Site SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RNF219 NM_024546 exon5 c.301-2A>G . TCGTCCTGAAAAA . 89.0 4.0 111.0 0.0 . 94 . . Atlas-SNP FARP1 10160 hgsc.bcm.edu hg19 13 99043122 99043122 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FARP1 NM_005766 exon11 c.T1076C p.V359A AGAAGGTGCAGTT . 91.0 4.0 99.0 0.0 . 207 . . Atlas-SNP DOCK9 23348 hgsc.bcm.edu hg19 13 99515318 99515318 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DOCK9 NM_001130049 exon32 c.G3537A p.R1179R ATTGATCCGCTGG . 117.0 45.0 132.0 0.0 . 311 . . Atlas-SNP PCID2 55795 hgsc.bcm.edu hg19 13 113834473 113834473 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PCID2 NM_001258212 exon11 c.A1021G p.S341G TCTACCTCACAGC . 103.0 6.0 121.0 0.0 . 30 . . Atlas-SNP OR4K2 390431 hgsc.bcm.edu hg19 14 20345276 20345276 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . OR4K2 NM_001005501 exon1 c.C850G p.P284A CTGAACCCAATAA . 27.0 5.0 50.0 0.0 . 97 . . Atlas-SNP LRRC16B 90668 hgsc.bcm.edu hg19 14 24530141 24530141 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 LRRC16B,colon,carcinoma,0,1 LRRC16B NM_138360 exon26 c.T2196C p.F732F GCTGTTTCCCAGC . 112.0 5.0 124.0 1.0 . 120 . . Atlas-SNP SCFD1 23256 hgsc.bcm.edu hg19 14 31139491 31139491 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SCFD1 NM_016106 exon11 c.A885G p.E295E TTTGGAAGAATCT . 93.0 4.0 174.0 0.0 . 43 . . Atlas-SNP FKBP3 2287 hgsc.bcm.edu hg19 14 45590787 45590787 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 FKBP3,colon,carcinoma,0,1 FKBP3 NM_002013 exon4 c.G355A p.G119R TATCTCCCTTTTT . 48.0 2.0 95.0 0.0 . 21 . . Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45653040 45653040 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FANCM NM_020937 exon17 c.T4450C p.F1484L GAAGACTTCAAGG . 78.0 4.0 149.0 0.0 . 225 . . Atlas-SNP POLE2 5427 hgsc.bcm.edu hg19 14 50120709 50120709 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . POLE2 NM_001197331 exon15 c.A1210G p.R404G CTTACCTGCAAGG . 88.0 4.0 119.0 0.0 . 36 . . Atlas-SNP ARID4A 5926 hgsc.bcm.edu hg19 14 58831470 58831470 + Missense_Mutation SNP A A G rs78751371 bycluster;by1000genomes;alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ARID4A NM_002892 exon20 c.A2663G p.D888G CCAGTGATTGTAT . 53.0 4.0 84.0 0.0 . 222 . A|0.999;T|0.001 Atlas-SNP ATP6V1D 51382 hgsc.bcm.edu hg19 14 67807190 67807190 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ATP6V1D NM_015994 exon8 c.A569G p.E190G TCCAGCTCTGTGA . 58.0 4.0 78.0 0.0 . 21 . . Atlas-SNP TMEM229B 161145 hgsc.bcm.edu hg19 14 67940454 67940454 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TMEM229B NM_182526 exon3 c.A187G p.M63V GGTACATGCGCTC . 78.0 4.0 123.0 0.0 . 20 . . Atlas-SNP SLC8A3 6547 hgsc.bcm.edu hg19 14 70512763 70512763 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC8A3 NM_183002 exon8 c.T2685C p.R895R GCAGCCACGGGGG . 85.0 4.0 124.0 0.0 . 234 . . Atlas-SNP MAP3K9 4293 hgsc.bcm.edu hg19 14 71201208 71201208 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MAP3K9 NM_033141 exon10 c.T1921C p.S641P CCAGGGACTTGAG . 78.0 4.0 84.0 0.0 . 109 . . Atlas-SNP SIPA1L1 26037 hgsc.bcm.edu hg19 14 72176082 72176082 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SIPA1L1 NM_015556 exon15 c.T3972C p.A1324A CTCTGCTGACAGT . 98.0 4.0 135.0 0.0 . 219 . . Atlas-SNP RBM25 58517 hgsc.bcm.edu hg19 14 73566448 73566448 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RBM25 NM_021239 exon9 c.A857G p.D286G TCAGAGACACACA . 76.0 4.0 103.0 0.0 . 81 . . Atlas-SNP NUMB 8650 hgsc.bcm.edu hg19 14 73743385 73743385 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NUMB NM_001005743 exon13 c.G1857A p.Q619Q AGCCCACTGGGCT . 90.0 4.0 143.0 0.0 . 56 . . Atlas-SNP GTF2A1 2957 hgsc.bcm.edu hg19 14 81662585 81662585 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GTF2A1 NM_015859 exon6 c.G479A p.G160D AGCTGGCCTAAAG . 68.0 4.0 94.0 0.0 . 34 . . Atlas-SNP RPS6KA5 9252 hgsc.bcm.edu hg19 14 91386646 91386646 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RPS6KA5 NM_182398 exon7 c.A710G p.D237G CACCAGTCAACTG . 103.0 5.0 189.0 0.0 . 135 . . Atlas-SNP CCDC88C 440193 hgsc.bcm.edu hg19 14 91792363 91792363 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CCDC88C NM_001080414 exon11 c.A1088G p.K363R ATGGCCTTGGTTT . 75.0 4.0 81.0 0.0 . 192 . . Atlas-SNP TRIP11 9321 hgsc.bcm.edu hg19 14 92466343 92466343 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TRIP11 NM_004239 exon12 c.A4667G p.K1556R ATTTGTTTTTGTT . 92.0 4.0 172.0 0.0 . 184 . . Atlas-SNP CPSF2 53981 hgsc.bcm.edu hg19 14 92609578 92609578 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CPSF2 NM_017437 exon9 c.T1080C p.T360T AACTACTCCTGGG . 62.0 4.0 131.0 0.0 . 63 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94120353 94120353 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . UNC79 NM_020818 exon38 c.T5850C p.A1950A CGCAGCTCTCAGT . 81.0 6.0 127.0 0.0 . 366 . . Atlas-SNP ASB2 51676 hgsc.bcm.edu hg19 14 94404109 94404109 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ASB2 NM_001202429 exon9 c.T1706C p.L569P GAGCAGAGCTGCA . 93.0 4.0 125.0 0.0 . 71 . . Atlas-SNP EML1 2009 hgsc.bcm.edu hg19 14 100380523 100380523 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EML1 NM_001008707 exon15 c.A1559G p.E520G TTCCAGAACAGTT . 83.0 4.0 144.0 0.0 . 97 . . Atlas-SNP MTA1 9112 hgsc.bcm.edu hg19 14 105916421 105916421 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 MTA1,NS,carcinoma,0,1 MTA1 NM_004689 exon5 c.C268T p.P90S GAGAACCCGGAAA . 100.0 0.0 147.0 0.0 . 61 . . Atlas-SNP CHRM5 1133 hgsc.bcm.edu hg19 15 34355738 34355738 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CHRM5 NM_012125 exon3 c.T820C p.S274P TCATCCTCCCGCA . 54.0 24.0 33.0 0.0 . 59 . . Atlas-SNP CASC5 57082 hgsc.bcm.edu hg19 15 40897317 40897317 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 CASC5_ENST00000346991,NS,carcinoma,0,2 CASC5 NM_144508 exon3 c.A45G p.I15M CAATATAGAGAGA . 56.0 3.0 144.0 1.0 . 269 . . Atlas-SNP UBR1 197131 hgsc.bcm.edu hg19 15 43360145 43360145 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . UBR1 NM_174916 exon6 c.A749G p.D250G TCACAGTCAAGAG . 78.0 4.0 102.0 0.0 . 124 . . Atlas-SNP ZSCAN29 146050 hgsc.bcm.edu hg19 15 43661910 43661910 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZSCAN29 NM_152455 exon1 c.A202G p.T68A AGACGGTCAGGAA . 93.0 4.0 113.0 0.0 . 57 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48738934 48738934 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FBN1 NM_000138 exon47 c.T5757C p.G1919G GATGAAACCATGA . 61.0 4.0 64.0 0.0 . 310 . . Atlas-SNP USP50 373509 hgsc.bcm.edu hg19 15 50833322 50833322 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . USP50 NM_203494 exon4 c.A584G p.E195G CATTTCTCACACT . 85.0 4.0 94.0 0.0 . 24 . . Atlas-SNP TRPM7 54822 hgsc.bcm.edu hg19 15 50881855 50881855 + Splice_Site SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TRPM7 NM_017672 exon28 c.4325-2A>G . GTGTCCTTTAATA . 56.0 4.0 81.0 0.0 . 145 . . Atlas-SNP MYO5A 4644 hgsc.bcm.edu hg19 15 52697484 52697484 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MYO5A NM_000259 exon9 c.T1053C p.P351P ACTTACAGGTATT . 88.0 5.0 67.0 0.0 . 145 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54590036 54590036 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . UNC13C NM_001080534 exon10 c.C4016A p.S1339Y CTGTATCTGGGGC . 304.0 104.0 340.0 0.0 . 674 . . Atlas-SNP AQP9 366 hgsc.bcm.edu hg19 15 58467128 58467128 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 AQP9,NS,carcinoma,0,1 AQP9 NM_020980 exon4 c.T388C p.S130P CTTATGTCCTTTG . 144.0 6.0 108.0 1.0 . 39 . . Atlas-SNP NARG2 79664 hgsc.bcm.edu hg19 15 60768331 60768331 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NARG2 NM_024611 exon3 c.T77C p.F26S CGAGAGAAAAATG . 85.0 4.0 123.0 0.0 . 82 . . Atlas-SNP PIF1 80119 hgsc.bcm.edu hg19 15 65108548 65108548 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PIF1 NM_025049 exon13 c.A1875G p.P625P ATCATCTGGGGAC . 96.0 4.0 90.0 0.0 . 43 . . Atlas-SNP DENND4A 10260 hgsc.bcm.edu hg19 15 65956954 65956954 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DENND4A NM_001144823 exon31 c.A5463G p.G1821G CATTGGTCCATAG . 149.0 7.0 169.0 0.0 . 217 . . Atlas-SNP CELF6 60677 hgsc.bcm.edu hg19 15 72581260 72581260 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CELF6 NM_001172684 exon9 c.G1042T p.G348C CCACGCCGGGGCT . 204.0 93.0 189.0 0.0 . 30 . . Atlas-SNP HEXA 3073 hgsc.bcm.edu hg19 15 72638893 72638893 + Nonsense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 HEXA,rectum,carcinoma,0,2 HEXA NM_000520 exon11 c.C1305G p.Y435X CACTATGTAGAAA . 133.0 0.0 92.0 0.0 . 48 . . Atlas-SNP CSPG4 1464 hgsc.bcm.edu hg19 15 75969161 75969161 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CSPG4 NM_001897 exon10 c.A5699G p.D1900G CCTGAATCCACAT . 85.0 4.0 70.0 0.0 . 175 . . Atlas-SNP TSPAN3 10099 hgsc.bcm.edu hg19 15 77348564 77348564 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TSPAN3 NM_198902 exon2 c.T97C p.Y33H AGACATAGGCTCC . 97.0 4.0 94.0 0.0 . 21 . . Atlas-SNP AGPHD1 123688 hgsc.bcm.edu hg19 15 78825563 78825563 + Nonsense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 AGPHD1,brain,glioma,0,2 AGPHD1 NM_001013619 exon5 c.G673T p.G225X AATCACGGAGATC . 139.0 0.0 125.0 0.0 . 22 . . Atlas-SNP WDR93 56964 hgsc.bcm.edu hg19 15 90281279 90281279 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . WDR93 NM_020212 exon16 c.T1773C p.Y591Y AGACTATTCACAT . 93.0 4.0 79.0 0.0 . 63 . . Atlas-SNP IGF1R 3480 hgsc.bcm.edu hg19 15 99467825 99467825 + Silent SNP G G A rs146023463 TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . IGF1R NM_000875 exon13 c.G2694A p.P898P AAACCCGGGGAAC . 195.0 72.0 198.0 0.0 . 147 . G|1.000;A|0.000 Atlas-SNP RHBDF1 64285 hgsc.bcm.edu hg19 16 113173 113173 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RHBDF1 NM_022450 exon5 c.A470G p.D157G AGGGGGTCTATGA . 83.0 4.0 50.0 0.0 . 54 . . Atlas-SNP SOLH 6650 hgsc.bcm.edu hg19 16 599102 599102 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SOLH NM_005632 exon5 c.A1559G p.E520G CCCAGGAGATCAA . 109.0 5.0 86.0 0.0 . 47 . . Atlas-SNP TPSAB1 7177 hgsc.bcm.edu hg19 16 1291189 1291189 + Missense_Mutation SNP G G T rs143010092 alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 TPSAB1,NS,carcinoma,0,1 TPSAB1 NM_003294 exon3 c.G97T p.G33W ATCGTCGGGGGTC . 231.0 0.0 153.0 0.0 . 24 . G|1.000;A|0.000 Atlas-SNP TSC2 7249 hgsc.bcm.edu hg19 16 2103446 2103446 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TSC2 NM_001114382 exon4 c.A329G p.Q110R TCGTGCAGGGGCA . 93.0 4.0 63.0 0.0 . 364 . . Atlas-SNP SRRM2 23524 hgsc.bcm.edu hg19 16 2813553 2813553 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SRRM2 NM_016333 exon11 c.T3024C p.S1008S GCCAAGTCTTTCT . 98.0 4.0 107.0 0.0 . 263 . . Atlas-SNP ZG16B 124220 hgsc.bcm.edu hg19 16 2881993 2881993 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZG16B NM_145252 exon4 c.T460C p.S154P ATCTCCTCTGCCT . 120.0 5.0 83.0 0.0 . 16 . . Atlas-SNP TIGD7 91151 hgsc.bcm.edu hg19 16 3349414 3349414 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TIGD7 NM_033208 exon2 c.A1201G p.N401D GAAGATTTTCCCA . 215.0 81.0 240.0 0.0 . 41 . . Atlas-SNP SCNN1G 6340 hgsc.bcm.edu hg19 16 23208690 23208690 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SCNN1G NM_001039 exon6 c.T1019C p.V340A CCTTCGTCGAAGA . 120.0 5.0 88.0 0.0 . 82 . . Atlas-SNP CD2BP2 10421 hgsc.bcm.edu hg19 16 30365247 30365247 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CD2BP2 NM_006110 exon4 c.A350G p.D117G CAGCTGTCTCGGA . 119.0 6.0 86.0 0.0 . 30 . . Atlas-SNP ITGAL 3683 hgsc.bcm.edu hg19 16 30490673 30490673 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ITGAL NM_002209 exon6 c.A467G p.D156G ACGTAGACCTGGT . 73.0 4.0 62.0 0.0 . 149 . . Atlas-SNP ZNF267 10308 hgsc.bcm.edu hg19 16 31927599 31927599 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF267 NM_003414 exon4 c.A2029G p.T677A CTCACTACACATC . 52.0 4.0 56.0 0.0 . 94 . . Atlas-SNP SNX20 124460 hgsc.bcm.edu hg19 16 50707345 50707345 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SNX20 NM_182854 exon4 c.A923G p.E308G GTGAGCTCCTTCA . 184.0 8.0 148.0 0.0 . 50 . . Atlas-SNP SALL1 6299 hgsc.bcm.edu hg19 16 51175352 51175352 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SALL1 NM_002968 exon2 c.A781G p.N261D CTGCATTCTGAGA . 98.0 4.0 109.0 0.0 . 301 . . Atlas-SNP BBS2 583 hgsc.bcm.edu hg19 16 56533696 56533696 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . BBS2 NM_031885 exon12 c.A1521G p.A507A CCTCTGTGCCCGT . 100.0 4.0 101.0 0.0 . 67 . . Atlas-SNP NLRC5 84166 hgsc.bcm.edu hg19 16 57060298 57060298 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . NLRC5 NM_032206 exon5 c.T1443C p.A481A TATTGCTCCACCC . 146.0 6.0 124.0 0.0 . 186 . . Atlas-SNP CNOT1 23019 hgsc.bcm.edu hg19 16 58633211 58633211 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CNOT1 NM_206999 exon2 c.T31C p.S11P TTTGAGACAAGGC . 100.0 4.0 115.0 0.0 . 359 . . Atlas-SNP DYNC1LI2 1783 hgsc.bcm.edu hg19 16 66783141 66783141 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DYNC1LI2 NM_006141 exon3 c.T257C p.L86P TATTCTAGGCCTC . 150.0 6.0 153.0 0.0 . 37 . . Atlas-SNP CCDC79 283847 hgsc.bcm.edu hg19 16 66820006 66820006 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CCDC79 NM_001136505 exon8 c.A488G p.D163G GACAAATCCAACT . 96.0 4.0 87.0 0.0 . 32 . . Atlas-SNP RLTPR 146206 hgsc.bcm.edu hg19 16 67683061 67683061 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RLTPR NM_001013838 exon18 c.C1674T p.F558F GAACTTCAACGTC . 143.0 50.0 132.0 0.0 . 124 . . Atlas-SNP SLC7A6OS 84138 hgsc.bcm.edu hg19 16 68344764 68344764 + Silent SNP A A G rs147089863 TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC7A6OS NM_032178 exon1 c.T66C p.A22A CACAAGAGCCTCC . 112.0 5.0 123.0 0.0 . 22 . A|1.000;G|0.000 Atlas-SNP CFDP1 10428 hgsc.bcm.edu hg19 16 75338933 75338933 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CFDP1 NM_006324 exon6 c.A798G p.R266R TTTCCCTCGATTA . 79.0 4.0 77.0 0.0 . 17 . . Atlas-SNP SYCE1L 100130958 hgsc.bcm.edu hg19 16 77245136 77245136 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SYCE1L NM_001129979 exon7 c.A386G p.D129G TGGAGGATCTGAT . 211.0 84.0 189.0 0.0 . 10 . . Atlas-SNP CENPN 55839 hgsc.bcm.edu hg19 16 81066277 81066277 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CENPN NM_001100625 exon11 c.T1040C p.V347A TGTTTGTCCCATT . 100.0 6.0 89.0 0.0 . 84 . . Atlas-SNP CMIP 80790 hgsc.bcm.edu hg19 16 81703808 81703808 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CMIP NM_198390 exon8 c.A887G p.E296G TGAACGAGCTCAA . 106.0 5.0 91.0 0.0 . 37 . . Atlas-SNP OSGIN1 29948 hgsc.bcm.edu hg19 16 83994667 83994667 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 OSGIN1,NS,carcinoma,0,1 OSGIN1 NM_182981 exon5 c.A478G p.K160E ATGCAGAAGAAGC . 60.0 3.0 56.0 0.0 . 33 . . Atlas-SNP KLHDC4 54758 hgsc.bcm.edu hg19 16 87742992 87742992 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KLHDC4 NM_017566 exon10 c.G1326A p.G442G GAGCACCCCATGC . 104.0 5.0 78.0 0.0 . 45 . . Atlas-SNP CA5A 763 hgsc.bcm.edu hg19 16 87960395 87960395 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CA5A NM_001739 exon2 c.A299G p.Y100C AAGAGGTAGCCAG . 86.0 4.0 68.0 0.0 . 32 . . Atlas-SNP FANCA 2175 hgsc.bcm.edu hg19 16 89849430 89849430 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FANCA NM_000135 exon16 c.G1551A p.R517R GGCCAGCCGTGTC . 393.0 157.0 326.0 0.0 . 99 . . Atlas-SNP GAS8 2622 hgsc.bcm.edu hg19 16 90106894 90106894 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GAS8 NM_001481 exon9 c.A1198G p.T400A GCCCTGACGCTGG . 64.0 4.0 42.0 0.0 . 29 . . Atlas-SNP TUSC5 286753 hgsc.bcm.edu hg19 17 1198888 1198888 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TUSC5 NM_172367 exon2 c.T491C p.I164T TCATTATCATGGT . 116.0 5.0 69.0 0.0 . 25 . . Atlas-SNP ACADVL 37 hgsc.bcm.edu hg19 17 7123814 7123814 + Missense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ACADVL NM_001270447 exon4 c.C239A p.S80Y ACCCCTCTGACGC . 101.0 36.0 79.0 0.0 . 43 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7699846 7699846 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNAH2 NM_020877 exon49 c.A7739G p.E2580G AGGAAGAGGTGAA . 96.0 4.0 67.0 0.0 . 498 . . Atlas-SNP CHD3 1107 hgsc.bcm.edu hg19 17 7803881 7803881 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CHD3 NM_001005271 exon18 c.T2987C p.L996S GCAACTTGGAGGG . 81.0 4.0 74.0 0.0 . 169 . . Atlas-SNP CNTROB 116840 hgsc.bcm.edu hg19 17 7851016 7851016 + Missense_Mutation SNP G G C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CNTROB NM_001037144 exon14 c.G2121C p.E707D GCTGGAGGGCCTC . 121.0 71.0 105.0 0.0 . 61 . . Atlas-SNP PER1 5187 hgsc.bcm.edu hg19 17 8051338 8051338 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PER1 NM_002616 exon10 c.T1211C p.L404P AGCATGAGGGGTC . 80.0 4.0 101.0 0.0 . 104 . . Atlas-SNP VAMP2 6844 hgsc.bcm.edu hg19 17 8064968 8064968 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 VAMP2,colon,carcinoma,0,1 VAMP2 NM_014232 exon3 c.C240T p.S80S GGCTGCGCTTGTT . 130.0 13.0 138.0 0.0 . 5 . . Atlas-SNP MYH10 4628 hgsc.bcm.edu hg19 17 8393813 8393813 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MYH10 NM_001256012 exon35 c.A4729G p.T1577A GCTGGGTCCTCAT . 182.0 8.0 179.0 0.0 . 148 . . Atlas-SNP NT5M 56953 hgsc.bcm.edu hg19 17 17250185 17250185 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 NT5M,NS,carcinoma,0,1 NT5M NM_020201 exon5 c.T611C p.L204P TGCAGCTGCAGCC . 107.0 5.0 90.0 0.0 . 17 . . Atlas-SNP KIAA0100 9703 hgsc.bcm.edu hg19 17 26961916 26961916 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIAA0100 NM_014680 exon16 c.A2689G p.M897V CCTTCATCAGCTC . 80.0 36.0 116.0 0.0 . 175 . . Atlas-SNP KIAA0100 9703 hgsc.bcm.edu hg19 17 26961957 26961957 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIAA0100 NM_014680 exon16 c.A2648G p.D883G ACATCATCCAAGA . 69.0 5.0 87.0 0.0 . 175 . . Atlas-SNP KRT40 125115 hgsc.bcm.edu hg19 17 39140493 39140493 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KRT40 NM_182497 exon3 c.T33C p.S11S CTCAGGAGAGCAG . 102.0 5.0 60.0 0.0 . 27 . . Atlas-SNP EFTUD2 9343 hgsc.bcm.edu hg19 17 42964105 42964105 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EFTUD2 NM_004247 exon3 c.A119G p.D40G TCGTCGTCATCAT . 121.0 6.0 105.0 0.0 . 85 . . Atlas-SNP HEXIM1 10614 hgsc.bcm.edu hg19 17 43227633 43227633 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . HEXIM1 NM_006460 exon1 c.A1076G p.D359G TTGGAGACTAGAC . 85.0 4.0 70.0 0.0 . 25 . . Atlas-SNP PHOSPHO1 162466 hgsc.bcm.edu hg19 17 47304050 47304050 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PHOSPHO1 NM_178500 exon2 c.A4G p.S2G AGCCACTCATTGT . 115.0 5.0 54.0 0.0 . 7 . . Atlas-SNP TEX14 56155 hgsc.bcm.edu hg19 17 56692692 56692692 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TEX14 NM_001201457 exon8 c.G800A p.G267E CTGCTCCCATTCC . 120.0 5.0 92.0 0.0 . 343 . . Atlas-SNP CACNG4 27092 hgsc.bcm.edu hg19 17 65026831 65026831 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CACNG4 NM_014405 exon4 c.G695A p.R232K ATGCCAGGATGCC . 173.0 68.0 149.0 0.0 . 44 . . Atlas-SNP AMZ2 51321 hgsc.bcm.edu hg19 17 66246396 66246396 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . AMZ2 NM_001033574 exon2 c.T68C p.V23A TGCTTGTATCACA . 90.0 4.0 80.0 0.0 . 15 . . Atlas-SNP DNAH17 8632 hgsc.bcm.edu hg19 17 76472713 76472713 + Nonsense_Mutation SNP C C A rs116230343 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNAH17 NM_173628 exon52 c.G8095T p.E2699X CTTTTTCGTCAAC . 513.0 297.0 279.0 0.0 . 347 . C|0.986;T|0.014 Atlas-SNP CARD14 79092 hgsc.bcm.edu hg19 17 78180851 78180851 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CARD14 NM_024110 exon20 c.T2774C p.V925A TCCACGTCTCTGT . 136.0 8.0 78.0 0.0 . 98 . . Atlas-SNP SMCHD1 23347 hgsc.bcm.edu hg19 18 2728514 2728514 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SMCHD1 NM_015295 exon23 c.A2833G p.T945A AATGGAACAGCTT . 65.0 4.0 74.0 0.0 . 88 . . Atlas-SNP RBBP8 5932 hgsc.bcm.edu hg19 18 20573440 20573440 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RBBP8 NM_203292 exon11 c.A1650G p.P550P TTCCCCAGGGGAG . 91.0 4.0 90.0 0.0 . 138 . . Atlas-SNP GAREM 64762 hgsc.bcm.edu hg19 18 29867200 29867200 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_022751 exon4 c.G1360A p.E454K GCTCTTCGTAGGG . 103.0 12.0 86.0 0.0 . . . . Atlas-SNP DTNA 1837 hgsc.bcm.edu hg19 18 32428290 32428290 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DTNA NM_001390 exon13 c.A1296G p.E432E TGATGAAGAACAC . 105.0 5.0 96.0 0.0 . 321 . . Atlas-SNP ZNF24 7572 hgsc.bcm.edu hg19 18 32920511 32920511 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF24 NM_006965 exon2 c.A104G p.E35G CCCTCTTCGCCAT . 60.0 22.0 45.0 0.0 . 40 . . Atlas-SNP ZNF24 7572 hgsc.bcm.edu hg19 18 32920512 32920512 + Nonsense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF24 NM_006965 exon2 c.G103T p.E35X CCTCTTCGCCATC . 59.0 21.0 45.0 0.0 . 40 . . Atlas-SNP FHOD3 80206 hgsc.bcm.edu hg19 18 34182680 34182680 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FHOD3 NM_025135 exon8 c.A762G p.K254K GGAAAAAGATGGA . 244.0 22.0 236.0 0.0 . 210 . . Atlas-SNP EPG5 57724 hgsc.bcm.edu hg19 18 43481064 43481064 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EPG5 NM_020964 exon26 c.A4543G p.T1515A GCTTCGTCGGGTG . 69.0 4.0 54.0 0.0 . 199 . . Atlas-SNP C18orf25 147339 hgsc.bcm.edu hg19 18 43820148 43820148 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . C18orf25 NM_145055 exon3 c.A893G p.E298G ATGCAGAGGCAGG . 100.0 5.0 72.0 0.0 . 27 . . Atlas-SNP LOXHD1 125336 hgsc.bcm.edu hg19 18 44190737 44190737 + Splice_Site SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . LOXHD1 NM_144612 exon7 c.759+2T>C . GAACTCACCTGGG . 73.0 4.0 69.0 0.0 . 367 . . Atlas-SNP DYM 54808 hgsc.bcm.edu hg19 18 46798653 46798653 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DYM NM_017653 exon11 c.T1146C p.I382I ATACAGAATCTCA . 99.0 4.0 128.0 0.0 . 52 . . Atlas-SNP CDH7 1005 hgsc.bcm.edu hg19 18 63525083 63525083 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CDH7 NM_004361 exon8 c.A1267G p.R423G TTGGAGAGATACT . 93.0 4.0 78.0 0.0 . 362 . . Atlas-SNP APC2 10297 hgsc.bcm.edu hg19 19 1469059 1469059 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . APC2 NM_005883 exon15 c.A5759G p.Q1920R CGAAGCAGCACAA . 52.0 4.0 25.0 0.0 . 50 . . Atlas-SNP ATP8B3 148229 hgsc.bcm.edu hg19 19 1791983 1791983 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ATP8B3 NM_001178002 exon19 c.A2066G p.E689G TCCTGCTCCATCT . 102.0 5.0 108.0 0.0 . 108 . . Atlas-SNP ZFR2 23217 hgsc.bcm.edu hg19 19 3821457 3821457 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZFR2 NM_015174 exon10 c.T1512C p.L504L AATGGGAAGGTCC . 95.0 4.0 74.0 0.0 . 63 . . Atlas-SNP HOOK2 29911 hgsc.bcm.edu hg19 19 12883615 12883615 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . HOOK2 NM_001100176 exon5 c.A367G p.I123V AACTGATGGCACA . 66.0 4.0 58.0 0.0 . 73 . . Atlas-SNP STX10 8677 hgsc.bcm.edu hg19 19 13255480 13255480 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . STX10 NM_003765 exon7 c.T584C p.L195P GCATCCAGCATGC . 98.0 4.0 74.0 0.0 . 12 . . Atlas-SNP USHBP1 83878 hgsc.bcm.edu hg19 19 17370230 17370230 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . USHBP1 NM_031941 exon7 c.A914G p.E305G AGCTTCTCAATGC . 119.0 5.0 100.0 0.0 . 85 . . Atlas-SNP FCHO1 23149 hgsc.bcm.edu hg19 19 17881358 17881358 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FCHO1 NM_001161358 exon7 c.A461G p.E154G GGAGGGAGAGTAC . 68.0 6.0 55.0 0.0 . 69 . . Atlas-SNP COMP 1311 hgsc.bcm.edu hg19 19 18899995 18899995 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . COMP NM_000095 exon5 c.C502T p.L168L AAGCCAGCCCCAC . 81.0 31.0 86.0 0.0 . 62 . . Atlas-SNP ATP13A1 57130 hgsc.bcm.edu hg19 19 19764869 19764869 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ATP13A1 NM_020410 exon14 c.T1898C p.M633T ACGGACATTCGCT . 96.0 4.0 81.0 0.0 . 82 . . Atlas-SNP ZNF682 91120 hgsc.bcm.edu hg19 19 20116962 20116962 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF682 NM_033196 exon4 c.T1349C p.V450A CGTTTGACGGCAG . 63.0 5.0 53.0 0.0 . 51 . . Atlas-SNP DPY19L3 147991 hgsc.bcm.edu hg19 19 32944160 32944160 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DPY19L3 NM_001172774 exon9 c.T965C p.V322A TTTCAGTATTCAT . 83.0 4.0 157.0 0.0 . 70 . . Atlas-SNP KIRREL2 84063 hgsc.bcm.edu hg19 19 36352785 36352785 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIRREL2 NM_199180 exon11 c.A1369G p.S457G CCAGAGAGCCGCG . 132.0 6.0 112.0 0.0 . 170 . . Atlas-SNP ZNF829 374899 hgsc.bcm.edu hg19 19 37383232 37383232 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF829 NM_001171979 exon6 c.A704G p.K235R CATGGTTTCTCTT . 60.0 4.0 83.0 0.0 . 70 . . Atlas-SNP WDR87 83889 hgsc.bcm.edu hg19 19 38378513 38378513 + Missense_Mutation SNP T T G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . WDR87 NM_031951 exon6 c.A5681C p.K1894T GTCAGCTTCTCCT . 208.0 84.0 206.0 0.0 . 191 . . Atlas-SNP CATSPERG 57828 hgsc.bcm.edu hg19 19 38834967 38834967 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CATSPERG NM_021185 exon6 c.A628G p.R210G CTGAAGAGAGACC . 149.0 6.0 108.0 0.0 . 121 . . Atlas-SNP ZNF780B 163131 hgsc.bcm.edu hg19 19 40541735 40541735 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF780B NM_001005851 exon5 c.T1031C p.L344P GTCAGAAGAGTAA . 86.0 4.0 92.0 0.0 . 143 . . Atlas-SNP SPTBN4 57731 hgsc.bcm.edu hg19 19 41060447 41060447 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SPTBN4 NM_020971 exon24 c.T4979C p.L1660P AGCTGCTCAAGAA . 168.0 7.0 117.0 0.0 . 213 . . Atlas-SNP ZNF226 7769 hgsc.bcm.edu hg19 19 44680289 44680289 + Missense_Mutation SNP A A G rs200035894 alternate_allele TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001032372 exon6 c.A874G p.S292G TGTTACAGCCCAG . 148.0 6.0 140.0 0.0 . . . A|0.999;T|0.001 Atlas-SNP ZFP112 7771 hgsc.bcm.edu hg19 19 44832241 44832241 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZFP112 NM_001083335 exon5 c.A2087G p.D696G CACTCATCACATT . 88.0 4.0 75.0 0.0 . 219 . . Atlas-SNP ZNF180 7733 hgsc.bcm.edu hg19 19 44988603 44988603 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF180 NM_013256 exon3 c.A176G p.E59G GTGTCTTCTCCCT . 80.0 4.0 72.0 0.0 . 103 . . Atlas-SNP CBLC 23624 hgsc.bcm.edu hg19 19 45285709 45285709 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CBLC NM_001130852 exon4 c.T740C p.V247A ATGAGGTCCAAGA . 207.0 9.0 118.0 0.0 . 41 . . Atlas-SNP RSPH6A 81492 hgsc.bcm.edu hg19 19 46305378 46305378 + Nonsense_Mutation SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RSPH6A NM_030785 exon4 c.G1798T p.E600X CCTTACCTGCATC . 126.0 45.0 107.0 0.0 . 70 . . Atlas-SNP MYPOP 339344 hgsc.bcm.edu hg19 19 46393962 46393962 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MYPOP NM_001012643 exon3 c.C1119T p.L373L CGGAGGGAGCGGG . 75.0 25.0 64.0 0.0 . 23 . . Atlas-SNP DHX34 9704 hgsc.bcm.edu hg19 19 47876048 47876048 + Silent SNP C C A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DHX34 NM_014681 exon8 c.C1830A p.A610A CGCAGCCGCACTT . 156.0 105.0 185.0 0.0 . 98 . . Atlas-SNP SLC17A7 57030 hgsc.bcm.edu hg19 19 49937914 49937914 + Nonsense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLC17A7 NM_020309 exon5 c.G582A p.W194X TTTGCTCCAGATC . 85.0 4.0 102.0 0.0 . 57 . . Atlas-SNP MED25 81857 hgsc.bcm.edu hg19 19 50338357 50338357 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MED25 NM_030973 exon14 c.T1597C p.F533L AGCGGCTTCGTCA . 122.0 5.0 150.0 0.0 . 98 . . Atlas-SNP PPP2R1A 5518 hgsc.bcm.edu hg19 19 52709237 52709237 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 PPP2R1A,colon,carcinoma,0,3 PPP2R1A NM_014225 exon3 c.A191G p.E64G AAGATGAGGTCCT . 90.0 4.0 114.0 2.0 . 187 . . Atlas-SNP ZNF808 388558 hgsc.bcm.edu hg19 19 53057563 53057563 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF808 NM_001039886 exon5 c.C1394T p.T465M CTTTCACGTGTAA . 52.0 4.0 102.0 0.0 . 81 . . Atlas-SNP ZNF808 388558 hgsc.bcm.edu hg19 19 53058144 53058144 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF808 NM_001039886 exon5 c.A1975G p.T659A GGGAAGACCTTCA . 35.0 4.0 73.0 0.0 . 81 . . Atlas-SNP ZNF765 91661 hgsc.bcm.edu hg19 19 53911420 53911420 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF765 NM_001040185 exon4 c.A612G p.Q204Q CACACAAAAACAG . 80.0 4.0 155.0 0.0 . 61 . . Atlas-SNP ZNF331 55422 hgsc.bcm.edu hg19 19 54081146 54081146 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 ZNF331_ENST00000253144,NS,carcinoma,0,1 ZNF331 NM_001253801 exon5 c.C1332T p.C444C GGAGTGCGGGAAG . 40.0 2.0 49.0 0.0 . 66 . . Atlas-SNP ZFP28 140612 hgsc.bcm.edu hg19 19 57066068 57066068 + Missense_Mutation SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZFP28 NM_020828 exon8 c.C1914G p.I638M GAGAATCCATACT . 109.0 31.0 77.0 0.0 . 99 . . Atlas-SNP ZNF551 90233 hgsc.bcm.edu hg19 19 58198344 58198344 + Missense_Mutation SNP A A C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZNF551 NM_138347 exon3 c.A701C p.H234P CAAGCCACAAACA . 99.0 5.0 66.0 0.0 . 65 . . Atlas-SNP SNAP25 6616 hgsc.bcm.edu hg19 20 10277688 10277688 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SNAP25 NM_003081 exon6 c.T397C p.F133L GGCGGCTTCATCC . 104.0 5.0 106.0 0.0 . 79 . . Atlas-SNP TTLL9 164395 hgsc.bcm.edu hg19 20 30510809 30510809 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TTLL9 NM_001008409 exon8 c.A617G p.E206G CCGTGGAGAACTA . 124.0 6.0 84.0 0.0 . 95 . . Atlas-SNP KIAA1755 85449 hgsc.bcm.edu hg19 20 36874425 36874425 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIAA1755 NM_001029864 exon2 c.T107C p.L36P GAGTCCAGGAGAC . 88.0 4.0 86.0 0.0 . 145 . . Atlas-SNP CHD6 84181 hgsc.bcm.edu hg19 20 40052330 40052330 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CHD6 NM_032221 exon30 c.A4357G p.R1453G GTTCTCTCCTAGT . 119.0 5.0 142.0 0.0 . 312 . . Atlas-SNP TOX2 84969 hgsc.bcm.edu hg19 20 42694558 42694558 + Silent SNP C C G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 TOX2_ENST00000348077,colon,carcinoma,+2,14 TOX2 NM_001098797 exon7 c.C1167G p.S389S TGCGTCCCCGCCG . 58.0 3.0 51.0 1.0 . 158 . . Atlas-SNP KCNB1 3745 hgsc.bcm.edu hg19 20 47990149 47990149 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KCNB1 NM_004975 exon2 c.T1948C p.S650P AACTAGAGTGCTG . 64.0 5.0 49.0 0.0 . 142 . . Atlas-SNP TMEM189 387521 hgsc.bcm.edu hg19 20 48741638 48741638 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TMEM189 NM_199129 exon6 c.A770G p.K257R CGAGGCTTCTCGC . 100.0 4.0 82.0 0.0 . 15 . . Atlas-SNP EDN3 1908 hgsc.bcm.edu hg19 20 57896179 57896179 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EDN3 NM_207034 exon3 c.G473T p.R158L ACTTGCGCTGCGC . 187.0 66.0 127.0 0.0 . 83 . . Atlas-SNP ZGPAT 84619 hgsc.bcm.edu hg19 20 62340023 62340023 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZGPAT NM_032527 exon2 c.T91C p.S31P GATTCGTCTGAGC . 122.0 5.0 89.0 0.0 . 57 . . Atlas-SNP CCT8 10694 hgsc.bcm.edu hg19 21 30439969 30439969 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CCT8 NM_006585 exon4 c.G289A p.V97I CTCCAACTTCTTG . 119.0 5.0 163.0 0.0 . 38 . . Atlas-SNP KRTAP26-1 388818 hgsc.bcm.edu hg19 21 31691918 31691918 + Missense_Mutation SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KRTAP26-1 NM_203405 exon1 c.C436A p.Q146K AGAATTGGGGGCG . 140.0 74.0 164.0 0.0 . 58 . . Atlas-SNP SON 6651 hgsc.bcm.edu hg19 21 34923955 34923955 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SON NM_032195 exon3 c.A2418G p.L806L GATGTTAGCAACC . 63.0 4.0 98.0 0.0 . 343 . . Atlas-SNP SIK1 150094 hgsc.bcm.edu hg19 21 44838373 44838373 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SIK1 NM_173354 exon12 c.G1511A p.S504N TCAGAGCTGGTTC . 81.0 7.0 86.0 0.0 . 65 . . Atlas-SNP TRAPPC10 7109 hgsc.bcm.edu hg19 21 45499543 45499543 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TRAPPC10 NM_003274 exon12 c.A1568G p.K523R CAAGGAAGCAGCT . 97.0 5.0 120.0 0.0 . 109 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26164940 26164940 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MYO18B NM_032608 exon4 c.A1057G p.T353A CCTCAGACCCAGA . 80.0 4.0 92.0 0.0 . 322 . . Atlas-SNP EWSR1 2130 hgsc.bcm.edu hg19 22 29693819 29693819 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EWSR1 NM_013986 exon14 c.A1312G p.K438E CCAGGGAAAGATT . 85.0 4.0 84.0 0.0 . 104 . . Atlas-SNP C22orf28 51493 hgsc.bcm.edu hg19 22 32792236 32792236 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . C22orf28 NM_014306 exon8 c.A815G p.D272G AGCGCATCTGGAA . 138.0 6.0 105.0 0.0 . 43 . . Atlas-SNP KCTD17 79734 hgsc.bcm.edu hg19 22 37449146 37449146 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KCTD17 NM_024681 exon2 c.A217G p.T73A GATGAGACCGGGG . 125.0 5.0 85.0 0.0 . 17 . . Atlas-SNP RAC2 5880 hgsc.bcm.edu hg19 22 37622734 37622734 + Silent SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RAC2 NM_002872 exon6 c.G558A p.K186K GGCGCGCTTCTGC . 70.0 24.0 55.0 0.0 . 22 . . Atlas-SNP GCAT 23464 hgsc.bcm.edu hg19 22 38208955 38208955 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GCAT NM_001171690 exon3 c.T467C p.L156P CCATCCTCTATCC . 95.0 5.0 77.0 0.0 . 27 . . Atlas-SNP TNRC6B 23112 hgsc.bcm.edu hg19 22 40708594 40708594 + Silent SNP G G T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TNRC6B NM_001162501 exon18 c.G4521T p.G1507G GCTGGGGGGTACA . 116.0 46.0 123.0 0.0 . 195 . . Atlas-SNP DESI1 27351 hgsc.bcm.edu hg19 22 42003333 42003333 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_015704 exon3 c.A113G p.H38R GATGTGTGCCTGT . 86.0 5.0 56.0 0.0 . . . . Atlas-SNP PACSIN2 11252 hgsc.bcm.edu hg19 22 43284655 43284655 + Silent SNP A A C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PACSIN2 NM_007229 exon5 c.T603G p.V201V CTTAAGAACATCT . 235.0 103.0 201.0 0.0 . 48 . . Atlas-SNP MCAT 27349 hgsc.bcm.edu hg19 22 43538972 43538972 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 MCAT,bladder,carcinoma,0,1 MCAT NM_014507 exon1 c.C383T p.S128L GCCAGCGATGCCA . 197.0 70.0 136.0 0.0 . 26 . . Atlas-SNP SCUBE1 80274 hgsc.bcm.edu hg19 22 43614330 43614330 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SCUBE1 NM_173050 exon15 c.A1822G p.R608G CTGGCCTCTGGGC . 146.0 6.0 89.0 0.0 . 105 . . Atlas-SNP DENND6B 414918 hgsc.bcm.edu hg19 22 50752089 50752089 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001001794 exon15 c.T1268C p.L423P TGGGTGAGCTCCA . 65.0 5.0 55.0 0.0 . . . . Atlas-SNP STS 412 hgsc.bcm.edu hg19 X 7268085 7268085 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . STS NM_000351 exon10 c.G1535A p.R512K GAGAGAGAAACCC . 67.0 6.0 43.0 0.0 . 64 . . Atlas-SNP ARHGAP6 395 hgsc.bcm.edu hg19 X 11682867 11682867 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ARHGAP6 NM_006125 exon1 c.T82C p.S28P TCTTGGAGAAGCC . 70.0 4.0 50.0 0.0 . 130 . . Atlas-SNP EGFL6 25975 hgsc.bcm.edu hg19 X 13624532 13624532 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EGFL6 NM_001167890 exon6 c.T555C p.C185C CATCTGTCCCTAC . 88.0 5.0 95.0 0.0 . 111 . . Atlas-SNP RBBP7 5931 hgsc.bcm.edu hg19 X 16876872 16876872 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RBBP7 NM_001198719 exon4 c.T540C p.P180P GATGTGAGGATTC . 86.0 4.0 81.0 0.0 . 58 . . Atlas-SNP PTCHD1 139411 hgsc.bcm.edu hg19 X 23411617 23411617 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PTCHD1 NM_173495 exon3 c.T1982C p.L661P AAGAACTCTATGA . 94.0 6.0 86.0 0.0 . 213 . . Atlas-SNP FAM47C 442444 hgsc.bcm.edu hg19 X 37026590 37026590 + Missense_Mutation SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FAM47C NM_001013736 exon1 c.G107A p.R36K AGCACAGGCGCCT . 313.0 218.0 281.0 0.0 . 267 . . Atlas-SNP TSPYL2 64061 hgsc.bcm.edu hg19 X 53115071 53115071 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TSPYL2 NM_022117 exon6 c.T1497C p.A499A GAGTGCTGATGAC . 76.0 4.0 78.0 0.0 . 53 . . Atlas-SNP KDM5C 8242 hgsc.bcm.edu hg19 X 53228324 53228324 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KDM5C NM_004187 exon15 c.A2078G p.E693G TCTCGCTCAGCCT . 123.0 6.0 101.0 0.0 . 385 . . Atlas-SNP TEX11 56159 hgsc.bcm.edu hg19 X 69964030 69964030 + Silent SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TEX11 NM_001003811 exon11 c.T777C p.T259T TGGCCCAGTAGAT . 99.0 6.0 108.0 0.0 . 132 . . Atlas-SNP ATP7A 538 hgsc.bcm.edu hg19 X 77284804 77284804 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ATP7A NM_000052 exon15 c.T2974C p.S992P CAAGCCTCTATCA . 106.0 5.0 84.0 0.0 . 248 . . Atlas-SNP TBX22 50945 hgsc.bcm.edu hg19 X 79282219 79282219 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TBX22 NM_016954 exon5 c.T650C p.M217T AATCCATGCATAA . 63.0 44.0 71.0 0.0 . 118 . . Atlas-SNP FAM46D 169966 hgsc.bcm.edu hg19 X 79699173 79699173 + Missense_Mutation SNP C C T novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FAM46D NM_001170574 exon5 c.C1135T p.P379S TACCACCCACTGC . 33.0 5.0 44.0 0.0 . 69 . . Atlas-SNP BRWD3 254065 hgsc.bcm.edu hg19 X 79947359 79947359 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . BRWD3 NM_153252 exon30 c.A3444G p.E1148E AACCCGTTCACAT . 87.0 5.0 76.0 0.0 . 251 . . Atlas-SNP DIAPH2 1730 hgsc.bcm.edu hg19 X 96167500 96167500 + Silent SNP G G A novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DIAPH2 NM_007309 exon7 c.G681A p.K227K TGACAAGAAGAAT . 75.0 4.0 66.0 0.0 . 148 . . Atlas-SNP GPRASP1 9737 hgsc.bcm.edu hg19 X 101910325 101910325 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPRASP1 NM_001099411 exon3 c.A1484G p.Q495R ATGAACAGGTCAT . 113.0 5.0 94.0 0.0 . 140 . . Atlas-SNP GUCY2F 2986 hgsc.bcm.edu hg19 X 108708492 108708492 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GUCY2F NM_001522 exon3 c.T911C p.L304P TCCCGGAGCTTTG . 114.0 6.0 98.0 0.0 . 178 . . Atlas-SNP TRPC5 7224 hgsc.bcm.edu hg19 X 111090642 111090642 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TRPC5 NM_012471 exon6 c.A1400G p.E467G CATTCCTCCCTTG . 27.0 4.0 24.0 0.0 . 142 . . Atlas-SNP XIAP 331 hgsc.bcm.edu hg19 X 123019618 123019618 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . XIAP NM_001204401 exon2 c.T106C p.F36L GCTAATTTTCCAA . 62.0 4.0 54.0 0.0 . 56 . . Atlas-SNP UTP14A 10813 hgsc.bcm.edu hg19 X 129055252 129055252 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . UTP14A NM_006649 exon11 c.A1037G p.E346G AGGAAGAGGAGGG . 124.0 6.0 118.0 0.0 . 74 . . Atlas-SNP RBMX2 51634 hgsc.bcm.edu hg19 X 129546386 129546386 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . RBMX2 NM_016024 exon6 c.A533G p.E178G ACCGGGAGGTACA . 130.0 6.0 101.0 0.0 . 46 . . Atlas-SNP GPR112 139378 hgsc.bcm.edu hg19 X 135438310 135438310 + Missense_Mutation SNP A A G novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPR112 NM_153834 exon9 c.A6913G p.M2305V ATGGTCATGGATC . 73.0 4.0 73.0 0.0 . 459 . . Atlas-SNP SOX3 6658 hgsc.bcm.edu hg19 X 139586972 139586972 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SOX3 NM_005634 exon1 c.A254G p.K85R GGGTTCTTGAGTT . 26.0 4.0 28.0 0.0 . 44 . . Atlas-SNP SLITRK4 139065 hgsc.bcm.edu hg19 X 142717685 142717685 + Missense_Mutation SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SLITRK4 NM_001184750 exon2 c.A1240G p.T414A TCACTGTAATTTG . 109.0 81.0 117.0 0.0 . 162 . . Atlas-SNP PNMA3 29944 hgsc.bcm.edu hg19 X 152226282 152226282 + Silent SNP T T C novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PNMA3 NM_013364 exon2 c.T870C p.N290N CGTGAATCAGACT . 83.0 4.0 90.0 0.0 . 81 . . Atlas-SNP GPAM 57678 hgsc.bcm.edu hg19 10 113920573 113920585 + Frame_Shift_Del DEL GACTTCCTCTTTC GACTTCCTCTTTC - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 GACTTCCTCTTTC GACTTCCTCTTTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPAM NM_001244949 exon16 c.1537_1549del p.513_517del . . 96.0 12.0 115.0 0.0 . 68 . . Atlas-INDEL GMEB2 26205 hgsc.bcm.edu hg19 20 62221981 62221981 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GMEB2 NM_012384 exon10 c.1055delT p.L352fs . . 147.0 10.0 71.0 0.0 . 44 . . Atlas-INDEL KIAA0196 9897 hgsc.bcm.edu hg19 8 126059515 126059515 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KIAA0196 NM_014846 exon20 c.2439delT p.P813fs . . 141.0 10.0 123.0 0.0 . 90 . . Atlas-INDEL MED1 5469 hgsc.bcm.edu hg19 17 37565247 37565247 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MED1 NM_004774 exon17 c.3228delG p.K1076fs . . 117.0 10.0 110.0 0.0 . 123 . . Atlas-INDEL ZFP36 7538 hgsc.bcm.edu hg19 19 39899237 39899239 + In_Frame_Del DEL CTC CTC - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 CTC CTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ZFP36 NM_003407 exon2 c.896_898del p.299_300del . . 93.0 21.0 84.0 0.0 . 19 . . Atlas-INDEL FGD6 55785 hgsc.bcm.edu hg19 12 95603722 95603722 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FGD6 NM_018351 exon2 c.1339delA p.I447X . . 163.0 11.0 103.0 0.0 . 127 . . Atlas-INDEL REXO4 57109 hgsc.bcm.edu hg19 9 136277557 136277557 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . REXO4 NM_020385 exon4 c.773delA p.E258fs . . 152.0 10.0 113.0 0.0 . 27 . . Atlas-INDEL DCAF4L2 138009 hgsc.bcm.edu hg19 8 88885079 88885079 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DCAF4L2 NM_152418 exon1 c.1122delC p.G374fs . . 172.0 13.0 75.0 0.0 . 187 . . Atlas-INDEL MINK1 50488 hgsc.bcm.edu hg19 17 4791017 4791017 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . MINK1 NM_170663 exon12 c.1161delC p.I387fs . . 145.0 11.0 95.0 0.0 . 110 . . Atlas-INDEL USP54 159195 hgsc.bcm.edu hg19 10 75264616 75264616 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . USP54 NM_152586 exon20 c.4304delA p.H1435fs . . 166.0 10.0 130.0 0.0 . 178 . . Atlas-INDEL EYA1 2138 hgsc.bcm.edu hg19 8 72267072 72267072 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EYA1 NM_172059 exon2 c.70delA p.K24fs . . 177.0 11.0 127.0 0.0 . 108 . . Atlas-INDEL EFNB2 1948 hgsc.bcm.edu hg19 13 107148141 107148141 + Frame_Shift_Del DEL C C - rs35501472 TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . EFNB2 NM_004093 exon3 c.455delT p.V152fs . . 120.0 10.0 105.0 0.0 . 39 . . Atlas-INDEL PPP1R15B 84919 hgsc.bcm.edu hg19 1 204378837 204378837 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PPP1R15B NM_032833 exon1 c.1704delT p.P568fs . . 163.0 10.0 115.0 0.0 . 67 . . Atlas-INDEL PDZD2 23037 hgsc.bcm.edu hg19 5 32090198 32090198 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PDZD2 NM_178140 exon19 c.6643delA p.T2215fs . . 166.0 10.0 91.0 0.0 . 306 . . Atlas-INDEL VSTM4 196740 hgsc.bcm.edu hg19 10 50315774 50315774 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . VSTM4 NM_144984 exon2 c.323delC p.A108fs . . 145.0 10.0 111.0 0.0 . 83 . . Atlas-INDEL PITPNA 5306 hgsc.bcm.edu hg19 17 1444911 1444911 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PITPNA NM_006224 exon6 c.322delC p.L108X . . 177.0 11.0 146.0 0.0 . 14 . . Atlas-INDEL PSMB10 5699 hgsc.bcm.edu hg19 16 67970637 67970637 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PSMB10 NM_002801 exon1 c.17delT p.L6fs . . 156.0 10.0 121.0 0.0 . 19 . . Atlas-INDEL DOCK9 23348 hgsc.bcm.edu hg19 13 99567709 99567709 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DOCK9 NM_001130049 exon8 c.770delG p.S257fs . . 148.0 10.0 118.0 0.0 . 311 . . Atlas-INDEL SIL1 64374 hgsc.bcm.edu hg19 5 138362514 138362514 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . SIL1 NM_001037633 exon7 c.622delG p.D208fs . . 194.0 13.0 108.0 0.0 . 31 . . Atlas-INDEL FOXK2 3607 hgsc.bcm.edu hg19 17 80544026 80544026 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FOXK2 NM_004514 exon7 c.1525delG p.A509fs . . 166.0 10.0 81.0 0.0 . 46 . . Atlas-INDEL TNKS1BP1 85456 hgsc.bcm.edu hg19 11 57081166 57081166 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 TNKS1BP1,NS,carcinoma,0,1 TNKS1BP1 NM_033396 exon5 c.997delG p.A333fs . . 208.0 13.0 194.0 0.0 . 148 . . Atlas-INDEL TENM2 57451 hgsc.bcm.edu hg19 5 167675302 167675302 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001122679 exon27 c.7330delG p.A2444fs . . 121.0 10.0 82.0 0.0 . . . . Atlas-INDEL POGLUT1 56983 hgsc.bcm.edu hg19 3 119187934 119187934 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . POGLUT1 NM_152305 exon1 c.65delA p.Q22fs . . 178.0 11.0 108.0 0.0 . 32 . . Atlas-INDEL ANXA8L2 244 hgsc.bcm.edu hg19 10 47756662 47756662 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ANXA8L2 NM_001630 exon8 c.575delA p.N192fs . . 161.0 10.0 136.0 0.0 . 8 . . Atlas-INDEL PRKRA 8575 hgsc.bcm.edu hg19 2 179300978 179300978 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . PRKRA NM_003690 exon7 c.679delA p.N227fs . . 130.0 17.0 149.0 0.0 . 56 . . Atlas-INDEL HCFC1 3054 hgsc.bcm.edu hg19 X 153217070 153217070 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . HCFC1 NM_005334 exon21 c.5350delG p.V1784fs . . 166.0 10.0 110.0 0.0 . 284 . . Atlas-INDEL STAG2 10735 hgsc.bcm.edu hg19 X 123224569 123224569 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . STAG2 NM_001042749 exon31 c.3421delG p.V1141fs . . 129.0 10.0 120.0 0.0 . 309 . . Atlas-INDEL KCNA3 3738 hgsc.bcm.edu hg19 1 111216834 111216834 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . KCNA3 NM_002232 exon1 c.599delA p.D200fs . . 109.0 55.0 69.0 0.0 . 91 . . Atlas-Indel,Pindel TRIM33 51592 hgsc.bcm.edu hg19 1 114973529 114973530 + Frame_Shift_Ins INS - - CAAC novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TRIM33 NM_033020 exon6 c.1046_1047insGTTG p.K349_E350delinsSX . . 148.0 11.0 172.0 0.0 . 115 . . Atlas-INDEL GPAM 57678 hgsc.bcm.edu hg19 10 113920588 113920593 + In_Frame_Del DEL CACAAA CACAAA - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 CACAAA CACAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPAM NM_001244949 exon16 c.1529_1534del p.510_512del . . 84.0 12.0 91.0 0.0 . 68 . . Atlas-INDEL HRNR 388697 hgsc.bcm.edu hg19 1 152189562 152189562 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . HRNR NM_001009931 exon3 c.4544delG p.S1515fs . . 15.0 13.0 6.0 1.0 . 403 . . Atlas-INDEL OR8G5 219865 hgsc.bcm.edu hg19 11 124134838 124134838 + Frame_Shift_Del DEL A A - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . . NM_001005198 exon1 c.115delG p.E39fs . . 179.0 11.0 164.0 0.0 . . . . Atlas-INDEL FCGBP 8857 hgsc.bcm.edu hg19 19 40433636 40433636 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . FCGBP NM_003890 exon2 c.634delT p.S212fs . . 154.0 10.0 159.0 0.0 . 416 . . Atlas-INDEL CLDN16 10686 hgsc.bcm.edu hg19 3 190106065 190106065 + Frame_Shift_Del DEL G G - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . CLDN16 NM_006580 exon1 c.156delT p.S52fs . . 211.0 10.0 204.0 0.0 . 59 . . Pindel GPAM 57678 hgsc.bcm.edu hg19 10 113920573 113920593 + In_Frame_Del DEL GACTTCCTCTTTCATCACAAA GACTTCCTCTTTCATCACAAA - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 GACTTCCTCTTTCATCACAAA GACTTCCTCTTTCATCACAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . GPAM NM_001244949 exon16 c.1529_1549del p.510_517del . . 97.0 11.0 99.0 0.0 . 68 . . Pindel ANKHD1-EIF4EBP3 404734 hgsc.bcm.edu hg19 5 139928556 139928556 + Frame_Shift_Del DEL C C - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . ANKHD1-EIF4EBP3 NM_020690 exon35 c.7744delA p.T2582fs . . 238.0 10.0 146.0 0.0 . 179 . . Pindel DNAJC19 131118 hgsc.bcm.edu hg19 3 180702431 180702431 + Frame_Shift_Del DEL T T - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . DNAJC19 NM_145261 exon6 c.349delT p.X117E . . 241.0 10.0 291.0 0.0 . 4 . . Pindel TRIM33 51592 hgsc.bcm.edu hg19 1 114973529 114973563 + Frame_Shift_Del DEL TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA - novel TCGA-DD-A3A1-01A-11D-A20W-10 TCGA-DD-A3A1-11A-11D-A20W-10 TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA TTTATCCTGAATAAGAGAAATGCATCATTAGGTTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f2249a54-91a5-4996-aa54-8ba33cba817c c6b1efb7-67ef-47f9-afdd-cad7f1d19a46 . TRIM33 NM_033020 exon6 c.1041_1047del p.347_349del . . 132.0 12.0 145.0 0.0 . 115 . . Pindel