Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KIAA1751 85452 hgsc.bcm.edu hg19 1 1887022 1887022 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIAA1751 NM_001080484 exon18 c.T2284C p.S762P CCTAGGAAAATTC . 179.0 8.0 95.0 0.0 . 92 . . Atlas-SNP DDI2 84301 hgsc.bcm.edu hg19 1 15959967 15959967 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DDI2 NM_032341 exon4 c.A539G p.Q180R AGCAGCAGGACCG . 118.0 5.0 67.0 0.0 . 38 . . Atlas-SNP CELA3B 23436 hgsc.bcm.edu hg19 1 22310726 22310726 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 CELA3B,NS,carcinoma,0,1 CELA3B NM_007352 exon6 c.G544C p.V182L CTGCCGGTGGTGG . 282.0 0.0 184.0 1.0 . 24 . . Atlas-SNP RPL11 6135 hgsc.bcm.edu hg19 1 24022333 24022333 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RPL11 NM_000975 exon5 c.A442G p.T148A CGCAGGACAGGCT . 165.0 7.0 88.0 0.0 . 21 . . Atlas-SNP YTHDF2 51441 hgsc.bcm.edu hg19 1 29069727 29069727 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . YTHDF2 NM_016258 exon4 c.A945G p.P315P TAGCCCACCAGTG . 373.0 48.0 196.0 0.0 . 47 . . Atlas-SNP PUM1 9698 hgsc.bcm.edu hg19 1 31441332 31441332 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PUM1 NM_014676 exon11 c.G1514A p.R505H CCTCCACGGAGAA . 180.0 22.0 87.0 0.0 . 107 . . Atlas-SNP C1orf94 84970 hgsc.bcm.edu hg19 1 34643426 34643426 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C1orf94 NM_001134734 exon1 c.T36C p.G12G CCTGGGTGGACAG . 119.0 5.0 80.0 0.0 . 156 . . Atlas-SNP MTF1 4520 hgsc.bcm.edu hg19 1 38288327 38288327 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MTF1 NM_005955 exon9 c.A1233G p.T411T ATTTCCTGTGGAT . 63.0 4.0 32.0 0.0 . 67 . . Atlas-SNP MACF1 23499 hgsc.bcm.edu hg19 1 39908507 39908507 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 MACF1_ENST00000361689,NS,carcinoid-endocrine_tumour,0,2 MACF1 NM_012090 exon75 c.C13049A p.A4350D TGGAAGCCATGAA . 186.0 0.0 108.0 1.0 . 909 . . Atlas-SNP MPL 4352 hgsc.bcm.edu hg19 1 43812586 43812586 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MPL NM_005373 exon8 c.A1289G p.E430G CAGGAGAAGGCCA . 85.0 4.0 39.0 0.0 . 651 . . Atlas-SNP CDCP2 200008 hgsc.bcm.edu hg19 1 54605317 54605317 + Missense_Mutation SNP A A T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDCP2 NM_201546 exon4 c.T1226A p.M409K CCATTCATGGGGG . 137.0 6.0 104.0 0.0 . 52 . . Atlas-SNP SRSF11 9295 hgsc.bcm.edu hg19 1 70687464 70687464 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SRSF11 NM_001190987 exon2 c.A145G p.M49V GAGCAGATGCGGA . 80.0 4.0 52.0 0.0 . 68 . . Atlas-SNP ODF2L 57489 hgsc.bcm.edu hg19 1 86850466 86850466 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ODF2L,colon,carcinoma,0,1 ODF2L NM_001184766 exon4 c.A265G p.N89D TCAAATTCAATGC . 63.0 3.0 47.0 0.0 . 53 . . Atlas-SNP CLCA2 9635 hgsc.bcm.edu hg19 1 86900229 86900229 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CLCA2 NM_006536 exon6 c.A773G p.H258R GTACCCACAACCA . 122.0 5.0 75.0 0.0 . 102 . . Atlas-SNP CLCA2 9635 hgsc.bcm.edu hg19 1 86920818 86920818 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CLCA2 NM_006536 exon14 c.G2440A p.D814N CAAGATGACTTTA . 100.0 4.0 72.0 0.0 . 102 . . Atlas-SNP LRRC8D 55144 hgsc.bcm.edu hg19 1 90399470 90399470 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRRC8D NM_018103 exon3 c.A843G p.G281G GGATGGAGAGCAG . 111.0 5.0 68.0 0.0 . 78 . . Atlas-SNP FNDC7 163479 hgsc.bcm.edu hg19 1 109260509 109260509 + Missense_Mutation SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 FNDC7_ENST00000370017,colon,carcinoma,0,1 FNDC7 NM_001144937 exon3 c.G193T p.G65W GAAGACGGGGACA . 221.0 0.0 147.0 0.0 . 113 . . Atlas-SNP RPRD2 23248 hgsc.bcm.edu hg19 1 150429791 150429791 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RPRD2 NM_015203 exon8 c.A898G p.N300D CGAGTAAACAATT . 83.0 4.0 68.0 0.0 . 189 . . Atlas-SNP BNIPL 149428 hgsc.bcm.edu hg19 1 151019162 151019162 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BNIPL NM_138278 exon10 c.A1073G p.X358W GGACATAGCACAG . 122.0 5.0 90.0 0.0 . 45 . . Atlas-SNP SPRR2G 6706 hgsc.bcm.edu hg19 1 153122487 153122487 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SPRR2G NM_001014291 exon2 c.G100A p.E34K AAGGCTCAGGGCA . 141.0 75.0 66.0 0.0 . 20 . . Atlas-SNP SCAMP3 10067 hgsc.bcm.edu hg19 1 155227359 155227359 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SCAMP3 NM_005698 exon6 c.A607G p.I203V AGAGGATAGAAAG . 283.0 176.0 125.0 0.0 . 33 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158641962 158641962 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SPTA1 NM_003126 exon11 c.A1375G p.T459A GGGCAGTCCAGTT . 97.0 4.0 69.0 0.0 . 720 . . Atlas-SNP USP21 27005 hgsc.bcm.edu hg19 1 161130443 161130443 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . USP21 NM_012475 exon2 c.T13C p.S5P CAGGCCTCTGAGC . 91.0 4.0 54.0 0.0 . 63 . . Atlas-SNP FMO4 2329 hgsc.bcm.edu hg19 1 171310877 171310877 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FMO4 NM_002022 exon10 c.T1576C p.S526P CTTGCCTCTCTTC . 150.0 6.0 79.0 0.0 . 64 . . Atlas-SNP LAMC1 3915 hgsc.bcm.edu hg19 1 183109548 183109548 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LAMC1 NM_002293 exon27 c.G4483A p.A1495T TCACAGGCTGCTC . 81.0 4.0 58.0 0.0 . 176 . . Atlas-SNP TPR 7175 hgsc.bcm.edu hg19 1 186319458 186319458 + Missense_Mutation SNP T T G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TPR NM_003292 exon21 c.A2673C p.K891N TAGTTCTTTTGTG . 234.0 108.0 138.0 0.0 . 441 . . Atlas-SNP C4BPA 722 hgsc.bcm.edu hg19 1 207317164 207317164 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C4BPA NM_000715 exon11 c.T1446C p.A482A TACAGCTCTGTGT . 126.0 6.0 94.0 0.0 . 70 . . Atlas-SNP MARK1 4139 hgsc.bcm.edu hg19 1 220792019 220792019 + Silent SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MARK1 NM_018650 exon9 c.C831T p.P277P TATTCCCTTCTAT . 87.0 4.0 62.0 0.0 . 161 . . Atlas-SNP DISP1 84976 hgsc.bcm.edu hg19 1 223177971 223177971 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DISP1 NM_032890 exon10 c.C3232A p.R1078S CTGAGTCGCGTGG . 237.0 23.0 131.0 0.0 . 145 . . Atlas-SNP ZNF678 339500 hgsc.bcm.edu hg19 1 227843072 227843072 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF678 NM_178549 exon4 c.A1286G p.E429G CTGGAGAGAAACC . 81.0 4.0 45.0 0.0 . 137 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228434396 228434396 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 OBSCN_ENST00000570156,NS,carcinoma,-2,2 OBSCN NM_001271223 exon14 c.G4201C p.A1401P GAGGCTGCGGGCT . 366.0 0.0 189.0 0.0 . 2142 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228434468 228434468 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,2 OBSCN NM_001271223 exon14 c.G4273C p.G1425R GAGGCTGGGGGCC . 293.0 0.0 158.0 0.0 . 2142 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237711798 237711798 + Missense_Mutation SNP C C G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 RYR2,NS,carcinoma,0,1 RYR2 NM_001035 exon26 c.C2974G p.Q992E CCATCACAAGAAG . 248.0 0.0 142.0 0.0 . 1273 . . Atlas-SNP ZNF670 93474 hgsc.bcm.edu hg19 1 247200789 247200789 + Missense_Mutation SNP T T G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF670 NM_033213 exon4 c.A1132C p.S378R GGGAACTGGAACA . 100.0 5.0 58.0 0.0 . 52 . . Atlas-SNP KIDINS220 57498 hgsc.bcm.edu hg19 2 8872078 8872078 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIDINS220 NM_020738 exon30 c.T4088C p.L1363P GAATTGAGACTCG . 109.0 5.0 80.0 0.0 . 136 . . Atlas-SNP ASAP2 8853 hgsc.bcm.edu hg19 2 9515031 9515031 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ASAP2 NM_001135191 exon17 c.T1704C p.D568D TGCTGATGGTGTG . 69.0 4.0 61.0 0.0 . 91 . . Atlas-SNP ATP6V1C2 245973 hgsc.bcm.edu hg19 2 10894153 10894153 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATP6V1C2 NM_001039362 exon4 c.T244C p.S82P GAGGACTCAAAGG . 106.0 6.0 99.0 0.0 . 73 . . Atlas-SNP ATAD2B 54454 hgsc.bcm.edu hg19 2 24033288 24033288 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATAD2B NM_001242338 exon18 c.T2352C p.A784A TGCTGGAGCAAGG . 118.0 5.0 120.0 0.0 . 110 . . Atlas-SNP EFR3B 22979 hgsc.bcm.edu hg19 2 25354341 25354341 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EFR3B NM_014971 exon9 c.A954G p.E318E GTCGGAAGCCGCG . 76.0 4.0 46.0 0.0 . 29 . . Atlas-SNP ASXL2 55252 hgsc.bcm.edu hg19 2 25966582 25966582 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ASXL2 NM_018263 exon12 c.A2624G p.D875G CTAGCATCTGTCT . 72.0 4.0 66.0 0.0 . 217 . . Atlas-SNP CENPA 1058 hgsc.bcm.edu hg19 2 27016084 27016084 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CENPA NM_001809 exon4 c.T360C p.T120T AGTTACTCTCTTC . 97.0 5.0 82.0 0.0 . 13 . . Atlas-SNP BRE 9577 hgsc.bcm.edu hg19 2 28210936 28210936 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BRE NM_199191 exon4 c.A282G p.P94P CCTGCCAGACCCC . 60.0 4.0 45.0 0.0 . 164 . . Atlas-SNP XDH 7498 hgsc.bcm.edu hg19 2 31587070 31587070 + Missense_Mutation SNP A A G rs371816841 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . XDH NM_000379 exon24 c.T2585C p.V862A TGGTCCACCTCAA . 90.0 4.0 93.0 0.0 . 191 . . Atlas-SNP HEATR5B 54497 hgsc.bcm.edu hg19 2 37217794 37217794 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HEATR5B NM_019024 exon34 c.A5694G p.P1898P TACCCATGGGTCG . 96.0 4.0 98.0 0.0 . 185 . . Atlas-SNP CLHC1 130162 hgsc.bcm.edu hg19 2 55445059 55445059 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_152385 exon4 c.A253G p.I85V TCTTTATTGTCTC . 78.0 4.0 95.0 0.0 . . . . Atlas-SNP TMEM17 200728 hgsc.bcm.edu hg19 2 62729911 62729911 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TMEM17 NM_198276 exon2 c.G119A p.S40N GCCAAACTGGAGA . 199.0 9.0 207.0 0.0 . 19 . . Atlas-SNP NAGK 55577 hgsc.bcm.edu hg19 2 71302707 71302707 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NAGK NM_017567 exon7 c.T740C p.L247P GGATACTCACTCA . 96.0 4.0 118.0 0.0 . 34 . . Atlas-SNP DYSF 8291 hgsc.bcm.edu hg19 2 71801370 71801370 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DYSF NM_001130982 exon31 c.T3313C p.S1105P TACGCCTCTCTTT . 97.0 4.0 66.0 0.0 . 536 . . Atlas-SNP WDR54 84058 hgsc.bcm.edu hg19 2 74652051 74652051 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDR54 NM_032118 exon7 c.T584C p.V195A TGTGTGTCTGGCG . 204.0 11.0 186.0 0.0 . 17 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84954804 84954804 + Silent SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DNAH6 NM_001370 exon61 c.C9984T p.T3328T CAATACCACCATT . 192.0 65.0 222.0 0.0 . 194 . . Atlas-SNP RETSAT 54884 hgsc.bcm.edu hg19 2 85578072 85578072 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RETSAT NM_017750 exon3 c.A428G p.Q143R TCCAGCTGCCCTT . 158.0 7.0 191.0 0.0 . 56 . . Atlas-SNP MRPS5 64969 hgsc.bcm.edu hg19 2 95767468 95767468 + Missense_Mutation SNP C C A rs199914429 by1000genomes;alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MRPS5 NM_031902 exon8 c.G764T p.G255V GAAAAACCTTTAA . 110.0 23.0 91.0 0.0 . 52 . C|1.000;G|0.000 Atlas-SNP IL18RAP 8807 hgsc.bcm.edu hg19 2 103067460 103067460 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IL18RAP NM_003853 exon11 c.A1363G p.R455G CTTGAAAGAGATG . 77.0 4.0 59.0 0.0 . 102 . . Atlas-SNP GCC2 9648 hgsc.bcm.edu hg19 2 109086500 109086500 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GCC2 NM_181453 exon6 c.G715A p.E239K TTGCAGGAAGAGC . 93.0 4.0 86.0 0.0 . 129 . . Atlas-SNP SAP130 79595 hgsc.bcm.edu hg19 2 128712861 128712861 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 SAP130_ENST00000357702,NS,carcinoma,0,2 SAP130 NM_001145928 exon16 c.G2199T p.M733I AGTCTCCATGGAC . 190.0 60.0 188.0 0.0 . 169 . . Atlas-SNP ACMSD 130013 hgsc.bcm.edu hg19 2 135621155 135621155 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACMSD NM_138326 exon5 c.T440C p.V147A CCCACGTCAACGA . 91.0 5.0 94.0 0.0 . 43 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141806696 141806696 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRP1B NM_018557 exon11 c.A1648G p.I550V TGGGGATCATGTA . 186.0 8.0 270.0 0.0 . 1315 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141812812 141812812 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 LRP1B,NS,carcinoma,0,1 LRP1B NM_018557 exon10 c.T1425C p.C475C GACTTCACATGCA . 89.0 4.0 110.0 1.0 . 1315 . . Atlas-SNP GALNT13 114805 hgsc.bcm.edu hg19 2 155252538 155252538 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GALNT13 NM_052917 exon10 c.A1192G p.R398G TCAGTCAGAAAAA . 104.0 5.0 80.0 0.0 . 170 . . Atlas-SNP GALNT13 114805 hgsc.bcm.edu hg19 2 155295237 155295237 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GALNT13 NM_052917 exon12 c.A1529G p.E510G ATGCTGAGGTATA . 72.0 4.0 63.0 0.0 . 170 . . Atlas-SNP BAZ2B 29994 hgsc.bcm.edu hg19 2 160229687 160229687 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BAZ2B NM_013450 exon27 c.A4082G p.Y1361C CTTCTGTACTGAC . 99.0 4.0 83.0 0.0 . 196 . . Atlas-SNP LY75 4065 hgsc.bcm.edu hg19 2 160732083 160732083 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LY75 NM_002349 exon12 c.A1846G p.S616G TGAAGCTTCTGCA . 105.0 5.0 83.0 0.0 . 151 . . Atlas-SNP DPP4 1803 hgsc.bcm.edu hg19 2 162875361 162875361 + Splice_Site SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 DPP4,NS,carcinoma,0,1 DPP4 NM_001935 exon17 c.1299-1G>A . TGGATTCTGTAAA . 107.0 5.0 94.0 0.0 . 90 . . Atlas-SNP OSBPL6 114880 hgsc.bcm.edu hg19 2 179226415 179226415 + Missense_Mutation SNP C C G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OSBPL6 NM_001201480 exon14 c.C1235G p.S412C TGCATTCTCTTTT . 234.0 92.0 258.0 0.0 . 178 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179427959 179427959 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TTN NM_001267550 exon326 c.A82900G p.T27634A GCTTGGTCACTGT . 321.0 111.0 304.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179500233 179500233 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TTN NM_001267550 exon227 c.G41818A p.E13940K TATCTTCTGGCAT . 165.0 50.0 153.0 0.0 . 18412 . . Atlas-SNP PDE1A 5136 hgsc.bcm.edu hg19 2 183387041 183387041 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PDE1A NM_001258312 exon2 c.A75G p.G25G CTGTTCTCCTGTA . 82.0 4.0 78.0 0.0 . 184 . . Atlas-SNP COL5A2 1290 hgsc.bcm.edu hg19 2 189904144 189904144 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COL5A2 NM_000393 exon51 c.A3779G p.D1260G TTTTTGTCATCAG . 137.0 8.0 119.0 0.0 . 230 . . Atlas-SNP ANKAR 150709 hgsc.bcm.edu hg19 2 190569759 190569759 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKAR NM_144708 exon8 c.T1719C p.P573P AACACCTCTACAC . 85.0 4.0 83.0 0.0 . 184 . . Atlas-SNP GLS 2744 hgsc.bcm.edu hg19 2 191765310 191765310 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GLS NM_014905 exon4 c.T626C p.V209A ACATTGTTTTGTT . 55.0 4.0 63.0 0.0 . 47 . . Atlas-SNP STAT1 6772 hgsc.bcm.edu hg19 2 191835434 191835434 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . STAT1 NM_007315 exon25 c.G2248A p.V750I TCTATACTGTGTT . 65.0 5.0 63.0 0.0 . 93 . . Atlas-SNP SF3B1 23451 hgsc.bcm.edu hg19 2 198281517 198281517 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SF3B1 NM_012433 exon6 c.A614G p.D205G GTCTGATCAGCTG . 157.0 7.0 147.0 0.0 . 1038 . . Atlas-SNP ORC2 4999 hgsc.bcm.edu hg19 2 201778021 201778021 + Silent SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ORC2 NM_006190 exon17 c.G1644A p.K548K TACCTTCTTTGTT . 77.0 4.0 70.0 0.0 . 48 . . Atlas-SNP NBEAL1 65065 hgsc.bcm.edu hg19 2 204045127 204045127 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NBEAL1 NM_001114132 exon42 c.T6400C p.F2134L CGACAGTTCCATT . 89.0 4.0 83.0 0.0 . 266 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210809878 210809878 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UNC80 NM_032504 exon45 c.A6956G p.E2319G TCTTAGAGCTGGT . 97.0 6.0 97.0 0.0 . 280 . . Atlas-SNP ABCB6 10058 hgsc.bcm.edu hg19 2 220075719 220075719 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABCB6 NM_005689 exon15 c.G2080T p.D694Y CCTCATCATTCCC . 149.0 42.0 115.0 0.0 . 76 . . Atlas-SNP ECEL1 9427 hgsc.bcm.edu hg19 2 233350834 233350834 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ECEL1 NM_004826 exon2 c.A530G p.Q177R TTGCGCTGGGCCG . 9.0 5.0 9.0 0.0 . 73 . . Atlas-SNP CHRNG 1146 hgsc.bcm.edu hg19 2 233408309 233408309 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CHRNG NM_005199 exon9 c.T935C p.L312P CCTTCCTCCTGGT . 169.0 7.0 129.0 0.0 . 54 . . Atlas-SNP EIF4E2 9470 hgsc.bcm.edu hg19 2 233421124 233421124 + Splice_Site SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EIF4E2 NM_004846 exon2 c.21-2A>G . CCATTCAGTTTGA . 99.0 4.0 107.0 0.0 . 23 . . Atlas-SNP HDAC4 9759 hgsc.bcm.edu hg19 2 240111545 240111545 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HDAC4 NM_006037 exon4 c.T323C p.L108P TCGTGGAGCTGCG . 87.0 4.0 74.0 0.0 . 127 . . Atlas-SNP SNED1 25992 hgsc.bcm.edu hg19 2 241988110 241988110 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SNED1 NM_001080437 exon10 c.A1431G p.G477G CAACGGAGGCAGA . 121.0 5.0 111.0 0.0 . 76 . . Atlas-SNP MTERFD2 130916 hgsc.bcm.edu hg19 2 242039228 242039228 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MTERFD2 NM_182501 exon2 c.A103G p.T35A CTGTCGTCCTTCT . 103.0 5.0 103.0 0.0 . 33 . . Atlas-SNP CNTN6 27255 hgsc.bcm.edu hg19 3 1367497 1367497 + Splice_Site SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CNTN6 NM_014461 exon9 c.947-2A>G . TGAAACAGCTCCT . 66.0 5.0 42.0 0.0 . 245 . . Atlas-SNP FANCD2 2177 hgsc.bcm.edu hg19 3 10108949 10108949 + Silent SNP T T C rs201487858 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FANCD2 NM_001018115 exon26 c.T2442C p.T814T GCTCACTCGGTTA . 115.0 7.0 61.0 0.0 . 253 . T|0.998;C|0.002 Atlas-SNP GALNT15 117248 hgsc.bcm.edu hg19 3 16268877 16268877 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_054110 exon10 c.A1790G p.H597R TTGTCCACATTCT . 87.0 4.0 57.0 0.0 . . . . Atlas-SNP SATB1 6304 hgsc.bcm.edu hg19 3 18427925 18427925 + Missense_Mutation SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SATB1 NM_002971 exon8 c.C1385A p.P462H ATGAGGGGGGCAG . 191.0 9.0 131.0 0.0 . 96 . . Atlas-SNP KCNH8 131096 hgsc.bcm.edu hg19 3 19559532 19559532 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KCNH8 NM_144633 exon15 c.A2585G p.E862G CAGAGGAGACCAA . 131.0 7.0 96.0 0.0 . 189 . . Atlas-SNP NEK10 152110 hgsc.bcm.edu hg19 3 27335088 27335088 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NEK10 NM_199347 exon17 c.T1364C p.L455P TTAAAGAGTGGTC . 101.0 5.0 59.0 0.0 . 271 . . Atlas-SNP OSBPL10 114884 hgsc.bcm.edu hg19 3 31712394 31712394 + Missense_Mutation SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 OSBPL10_ENST00000396556,extremity,malignant_melanoma,0,6 OSBPL10 NM_017784 exon9 c.C1808A p.P603Q ACCCACGGGATGG . 197.0 0.0 140.0 0.0 . 160 . . Atlas-SNP OXSR1 9943 hgsc.bcm.edu hg19 3 38207429 38207429 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OXSR1 NM_005109 exon1 c.A62G p.E21G TGCAGGAGGTGAT . 189.0 8.0 130.0 0.0 . 74 . . Atlas-SNP KIF15 56992 hgsc.bcm.edu hg19 3 44835775 44835775 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIF15 NM_020242 exon8 c.T706C p.S236P TCTAGGTCTCATG . 165.0 7.0 114.0 0.0 . 103 . . Atlas-SNP PFKFB4 5210 hgsc.bcm.edu hg19 3 48561220 48561220 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PFKFB4 NM_004567 exon11 c.A1136G p.E379G TCCAGCTCCATGA . 198.0 8.0 143.0 0.0 . 39 . . Atlas-SNP MST1 4485 hgsc.bcm.edu hg19 3 49722913 49722913 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MST1 NM_020998 exon12 c.G1414A p.D472N GGGGGTCCAGGAT . 552.0 46.0 262.0 0.0 . 84 . . Atlas-SNP CDHR4 389118 hgsc.bcm.edu hg19 3 49836290 49836290 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDHR4 NM_001007540 exon4 c.T464C p.L155P GGGAGGAGCAGAG . 142.0 7.0 115.0 0.0 . 37 . . Atlas-SNP RBM6 10180 hgsc.bcm.edu hg19 3 50095987 50095987 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RBM6 NM_005777 exon10 c.T2122C p.S708P CTCGACTCCCATG . 86.0 4.0 51.0 0.0 . 85 . . Atlas-SNP DOCK3 1795 hgsc.bcm.edu hg19 3 51198017 51198017 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DOCK3 NM_004947 exon12 c.T921C p.G307G GAAAGGTCCTCCT . 127.0 6.0 72.0 0.0 . 397 . . Atlas-SNP DENND6A 201627 hgsc.bcm.edu hg19 3 57644895 57644895 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_152678 exon8 c.A712G p.T238A GACATGTGGGAAT . 94.0 4.0 67.0 0.0 . . . . Atlas-SNP ROBO1 6091 hgsc.bcm.edu hg19 3 78719381 78719381 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ROBO1 NM_002941 exon11 c.T1413C p.T471T GACGAAAGTGCCA . 95.0 4.0 48.0 0.0 . 833 . . Atlas-SNP EPHA3 2042 hgsc.bcm.edu hg19 3 89480505 89480505 + Missense_Mutation SNP C C G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EPHA3 NM_005233 exon13 c.C2342G p.T781R ATACAACAAGAGT . 141.0 83.0 121.0 0.0 . 501 . . Atlas-SNP SLC9C1 285335 hgsc.bcm.edu hg19 3 111888153 111888153 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_183061 exon24 c.A2942G p.H981R TACAAGTGAGTTT . 84.0 4.0 74.0 0.0 . . . . Atlas-SNP SLC15A2 6565 hgsc.bcm.edu hg19 3 121613348 121613348 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC15A2 NM_001145998 exon1 c.T25C p.S9P AATGAGTCCAAGG . 93.0 4.0 68.0 0.0 . 92 . . Atlas-SNP MYLK 4638 hgsc.bcm.edu hg19 3 123419119 123419119 + Missense_Mutation SNP C C G rs72491150 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 MYLK,bladder,carcinoma,0,1 MYLK NM_053025 exon18 c.G3196C p.E1066Q TGAGTTCTTCTTT . 163.0 9.0 133.0 2.0 . 224 . . Atlas-SNP PLXND1 23129 hgsc.bcm.edu hg19 3 129277345 129277345 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLXND1 NM_015103 exon33 c.A5371G p.I1791V CGTCGATGTGGTC . 130.0 6.0 70.0 0.0 . 149 . . Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130300684 130300684 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COL6A6 NM_001102608 exon8 c.T3827C p.L1276P CTCTTCTCAATGC . 149.0 6.0 88.0 0.0 . 497 . . Atlas-SNP MRPS22 56945 hgsc.bcm.edu hg19 3 139074572 139074572 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MRPS22 NM_020191 exon7 c.A927G p.P309P CCATCCAGATGGC . 243.0 10.0 154.0 0.0 . 40 . . Atlas-SNP CHST2 9435 hgsc.bcm.edu hg19 3 142840446 142840446 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CHST2 NM_004267 exon2 c.T788C p.L263P CACCACTCTGCCC . 120.0 5.0 90.0 0.0 . 67 . . Atlas-SNP AADAC 13 hgsc.bcm.edu hg19 3 151542580 151542580 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AADAC NM_001086 exon4 c.A561G p.G187G TTCTGGAGATAGT . 164.0 7.0 105.0 0.0 . 49 . . Atlas-SNP ARHGEF26 26084 hgsc.bcm.edu hg19 3 153839867 153839867 + Missense_Mutation SNP T T C rs200926651 alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARHGEF26 NM_001251962 exon2 c.T86C p.V29A ACCAGGTTCTGGG . 231.0 11.0 146.0 0.0 . 158 . . Atlas-SNP SI 6476 hgsc.bcm.edu hg19 3 164758754 164758754 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SI NM_001041 exon18 c.A2133G p.E711E TACTGTTTCTCCA . 83.0 4.0 89.0 0.0 . 500 . . Atlas-SNP MECOM 2122 hgsc.bcm.edu hg19 3 169099249 169099249 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MECOM NM_004991 exon2 c.G101A p.G34E GCTACTCCATCTG . 151.0 51.0 92.0 0.0 . 216 . . Atlas-SNP LRRIQ4 344657 hgsc.bcm.edu hg19 3 169540116 169540116 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRRIQ4 NM_001080460 exon1 c.T407C p.V136A CCGTCGTCATCTT . 94.0 4.0 65.0 0.0 . 68 . . Atlas-SNP DCUN1D1 54165 hgsc.bcm.edu hg19 3 182665124 182665124 + Splice_Site SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DCUN1D1 NM_020640 exon7 c.604-2A>G . TGTTCCTATTTAA . 63.0 4.0 36.0 0.0 . 27 . . Atlas-SNP MCCC1 56922 hgsc.bcm.edu hg19 3 182751818 182751818 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MCCC1 NM_020166 exon14 c.T1642C p.S548P TATACGAGATATT . 110.0 5.0 67.0 0.0 . 87 . . Atlas-SNP POLR2H 5437 hgsc.bcm.edu hg19 3 184084588 184084588 + Missense_Mutation SNP T T C rs138482713 alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 POLR2H,NS,carcinoma,0,1 POLR2H NM_006232 exon4 c.T335C p.L112P CACGCCTGTAAGT . 94.0 4.0 88.0 0.0 . 17 . T|1.000;G|0.000 Atlas-SNP MUC4 4585 hgsc.bcm.edu hg19 3 195508423 195508423 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MUC4 NM_018406 exon2 c.C10028T p.T3343I ACAGGGGTGGTGT . 304.0 115.0 159.0 0.0 . 1505 . . Atlas-SNP PIGZ 80235 hgsc.bcm.edu hg19 3 196674974 196674974 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PIGZ NM_025163 exon3 c.C794G p.A265G AGGGCTGCCCCAG . 88.0 5.0 51.0 0.0 . 34 . . Atlas-SNP PIGZ 80235 hgsc.bcm.edu hg19 3 196674975 196674975 + Missense_Mutation SNP C C G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PIGZ NM_025163 exon3 c.G793C p.A265P GGGCTGCCCCAGG . 88.0 4.0 52.0 0.0 . 34 . . Atlas-SNP PDE6B 5158 hgsc.bcm.edu hg19 4 660330 660330 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PDE6B NM_001145291 exon20 c.A2279G p.D760G TGATGGACCGGAA . 106.0 5.0 71.0 0.0 . 80 . . Atlas-SNP HTRA3 94031 hgsc.bcm.edu hg19 4 8307696 8307696 + Splice_Site SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HTRA3 NM_053044 exon9 c.1197-2A>G . GTTGGCAGAGGCG . 96.0 5.0 99.0 0.0 . 39 . . Atlas-SNP FGFBP1 9982 hgsc.bcm.edu hg19 4 15938186 15938186 + Missense_Mutation SNP T T C rs201240184 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FGFBP1 NM_005130 exon3 c.A70G p.K24E TTTTTTTCCCCTC . 152.0 7.0 145.0 0.0 . 26 . . Atlas-SNP CORIN 10699 hgsc.bcm.edu hg19 4 47695047 47695047 + Missense_Mutation SNP C C T rs143738568 alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CORIN NM_006587 exon6 c.G853A p.G285R GTTTCCCGGGGAT . 127.0 48.0 100.0 0.0 . 154 . C|1.000;G|0.000 Atlas-SNP SLAIN2 57606 hgsc.bcm.edu hg19 4 48384604 48384604 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLAIN2 NM_020846 exon5 c.A882G p.A294A ATATGCAGCCACC . 45.0 4.0 29.0 0.0 . 31 . . Atlas-SNP SRP72 6731 hgsc.bcm.edu hg19 4 57340538 57340538 + Missense_Mutation SNP A A C rs200923265 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 SRP72,NS,carcinoma,0,1 SRP72 NM_006947 exon5 c.A591C p.K197N CATGAAAATCCTA . 106.0 7.0 97.0 0.0 . 59 . A|0.998;C|0.002 Atlas-SNP AFF1 4299 hgsc.bcm.edu hg19 4 88026981 88026981 + Missense_Mutation SNP T T C rs141434206 bycluster;alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AFF1 NM_001166693 exon10 c.T1360C p.S454P CCCTCCTCATCTG . 112.0 5.0 176.0 0.0 . 102 . T|1.000;A|0.000 Atlas-SNP FAM13A 10144 hgsc.bcm.edu hg19 4 89702436 89702436 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM13A NM_014883 exon11 c.T1338C p.T446T TTCCTGAGTATTC . 97.0 4.0 134.0 0.0 . 181 . . Atlas-SNP RAP1GDS1 5910 hgsc.bcm.edu hg19 4 99313179 99313179 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RAP1GDS1 NM_001100426 exon6 c.T588C p.N196N CCAAAATGCAGCT . 77.0 33.0 126.0 0.0 . 61 . . Atlas-SNP ADH4 127 hgsc.bcm.edu hg19 4 100060247 100060247 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ADH4 NM_000670 exon4 c.T315C p.C105C ACTCAGACAAAAC . 100.0 4.0 119.0 0.0 . 35 . . Atlas-SNP CENPE 1062 hgsc.bcm.edu hg19 4 104066439 104066439 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CENPE NM_001813 exon32 c.A4625G p.E1542G TGAACCTCACTAA . 86.0 5.0 119.0 0.0 . 253 . . Atlas-SNP TBCK 93627 hgsc.bcm.edu hg19 4 107156504 107156504 + Missense_Mutation SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 TBCK NM_001163436 exon15 c.C1371A p.N457K GATTTGGTTTTTT . 34.0 2.0 53.0 0.0 . 89 . . Atlas-SNP CYP2U1 113612 hgsc.bcm.edu hg19 4 108866756 108866756 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CYP2U1 NM_183075 exon2 c.T1121C p.V374A CCGATGTACAAGG . 68.0 4.0 84.0 0.0 . 20 . . Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114276005 114276005 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANK2 NM_001148 exon38 c.A6231G p.K2077K TAAGAAAGAAGAT . 92.0 5.0 108.0 0.0 . 576 . . Atlas-SNP CCNA2 890 hgsc.bcm.edu hg19 4 122742218 122742218 + Missense_Mutation SNP A A C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 CCNA2,colon,carcinoma,0,1 CCNA2 NM_001237 exon3 c.T486G p.I162M TAATATAATTGAC . 135.0 0.0 166.0 0.0 . 30 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123145811 123145811 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIAA1109 NM_015312 exon21 c.A2772G p.T924T TCTTACAGCTAAG . 168.0 7.0 209.0 0.0 . 424 . . Atlas-SNP SPRY1 10252 hgsc.bcm.edu hg19 4 124322782 124322782 + Silent SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SPRY1 NM_001258039 exon2 c.G36A p.S12S CAGTTCGTTAGTT . 188.0 60.0 143.0 0.0 . 28 . . Atlas-SNP ANKRD50 57182 hgsc.bcm.edu hg19 4 125593315 125593315 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ANKRD50,NS,carcinoma,0,1 ANKRD50 NM_020337 exon4 c.G1117A p.V373I TCCATACTGCGTG . 95.0 4.0 119.0 1.0 . 136 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126329790 126329790 + Missense_Mutation SNP G G C rs370906656 alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 FAT4_ENST00000394329,NS,carcinoma,0,2 FAT4 NM_024582 exon4 c.G5761C p.G1921R GAAGATGGTGGGG . 97.0 0.0 82.0 0.0 . 1752 . . Atlas-SNP RNF150 57484 hgsc.bcm.edu hg19 4 141868832 141868832 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RNF150 NM_020724 exon4 c.A866G p.D289G ACAACGTCATTGG . 264.0 11.0 251.0 0.0 . 94 . . Atlas-SNP USP38 84640 hgsc.bcm.edu hg19 4 144135539 144135539 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . USP38 NM_032557 exon9 c.T2410C p.S804P TCATTGTCAGAAA . 130.0 6.0 112.0 0.0 . 92 . . Atlas-SNP USP38 84640 hgsc.bcm.edu hg19 4 144135649 144135649 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . USP38 NM_032557 exon9 c.T2520C p.Y840Y GCCCTATCTATTA . 82.0 4.0 66.0 0.0 . 92 . . Atlas-SNP ARFIP1 27236 hgsc.bcm.edu hg19 4 153803996 153803996 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARFIP1 NM_001025595 exon7 c.A755G p.D252G TTGAAGATACATT . 65.0 4.0 60.0 0.0 . 69 . . Atlas-SNP DDX60 55601 hgsc.bcm.edu hg19 4 169195111 169195111 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DDX60 NM_017631 exon17 c.G2428T p.V810L CGACCACCCCGTC . 88.0 6.0 82.0 0.0 . 304 . . Atlas-SNP SORBS2 8470 hgsc.bcm.edu hg19 4 186598318 186598318 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SORBS2 NM_001145673 exon5 c.A325G p.T109A TGTGTGTCTCAGG . 139.0 6.0 133.0 0.0 . 300 . . Atlas-SNP FAT1 2195 hgsc.bcm.edu hg19 4 187517698 187517698 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAT1 NM_005245 exon25 c.T12996C p.Y4332Y ACTGTCATAGTCA . 99.0 4.0 83.0 0.0 . 500 . . Atlas-SNP ADCY2 108 hgsc.bcm.edu hg19 5 7396594 7396594 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ADCY2 NM_020546 exon1 c.T185C p.L62P CCCTGCTCGCCGT . 150.0 6.0 63.0 0.0 . 337 . . Atlas-SNP FAM173B 134145 hgsc.bcm.edu hg19 5 10239279 10239279 + Missense_Mutation SNP G G T rs367602123 alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 FAM173B,NS,carcinoma,0,1 FAM173B NM_199133 exon2 c.C206A p.P69Q ACAAACGGCAAAC . 236.0 0.0 110.0 1.0 . 24 . . Atlas-SNP CTNND2 1501 hgsc.bcm.edu hg19 5 11159822 11159822 + Silent SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CTNND2 NM_001332 exon12 c.C2025T p.I675I ATCCTGGATGATT . 323.0 66.0 185.0 0.0 . 289 . . Atlas-SNP NUP155 9631 hgsc.bcm.edu hg19 5 37352917 37352917 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NUP155 NM_153485 exon5 c.C478T p.H160Y GCACATGAGGTTG . 102.0 6.0 67.0 0.0 . 116 . . Atlas-SNP SNX18 112574 hgsc.bcm.edu hg19 5 53813856 53813856 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SNX18 NM_052870 exon1 c.A74G p.E25G AGCACGAGGTGCT . 48.0 5.0 33.0 0.0 . 102 . . Atlas-SNP ERCC8 1161 hgsc.bcm.edu hg19 5 60214181 60214181 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ERCC8 NM_000082 exon4 c.A310G p.T104A GTACAGTCTCCAC . 115.0 5.0 77.0 0.0 . 31 . . Atlas-SNP ZSWIM6 57688 hgsc.bcm.edu hg19 5 60839780 60839780 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZSWIM6 NM_020928 exon14 c.T3284C p.V1095A TGGTGGTCAAGAG . 143.0 7.0 83.0 0.0 . 51 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89968413 89968413 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GPR98 NM_032119 exon22 c.A4803G p.G1601G CAGAGGAGCTCTG . 372.0 87.0 177.0 0.0 . 605 . . Atlas-SNP CHD1 1105 hgsc.bcm.edu hg19 5 98194094 98194094 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CHD1 NM_001270 exon34 c.A4577G p.D1526G TCCACATCTGTTA . 170.0 7.0 111.0 0.0 . 137 . . Atlas-SNP MAN2A1 4124 hgsc.bcm.edu hg19 5 109190938 109190938 + Missense_Mutation SNP C C T rs200723635 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 MAN2A1,colon,carcinoma,0,1 MAN2A1 NM_002372 exon20 c.C3074T p.S1025F AGTTCTCCTCACC . 81.0 8.0 48.0 2.0 . 136 . . Atlas-SNP KCNN2 3781 hgsc.bcm.edu hg19 5 113698631 113698631 + Silent SNP T T C rs76852708 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,4 KCNN2 NM_021614 exon1 c.T159C p.A53A AGCCGCTGCCGCC . 17.0 4.0 2.0 0.0 . 144 . . Atlas-SNP PHAX 51808 hgsc.bcm.edu hg19 5 125960441 125960441 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PHAX NM_032177 exon5 c.T1090C p.S364P TTGGCCTCTCTTG . 160.0 7.0 103.0 0.0 . 20 . . Atlas-SNP PCDHB15 56121 hgsc.bcm.edu hg19 5 140627002 140627002 + Missense_Mutation SNP C C G rs17844634 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 PCDHB15,NS,carcinoma,0,2 PCDHB15 NM_018935 exon1 c.C1856G p.A619G TGTGGGCGCACAA . 35.0 11.0 7.0 1.0 . 138 . . Atlas-SNP ARHGEF37 389337 hgsc.bcm.edu hg19 5 149006643 149006643 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARHGEF37 NM_001001669 exon11 c.T1469C p.L490P AGCCGCTCCTTCC . 208.0 9.0 94.0 0.0 . 45 . . Atlas-SNP THG1L 54974 hgsc.bcm.edu hg19 5 157161681 157161681 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . THG1L NM_017872 exon3 c.T466C p.F156L CCAGGCTTTGACG . 191.0 8.0 99.0 0.0 . 31 . . Atlas-SNP SLIT3 6586 hgsc.bcm.edu hg19 5 168212944 168212944 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLIT3 NM_001271946 exon12 c.A1119G p.G373G AAACAGTCCCTTG . 132.0 6.0 66.0 0.0 . 224 . . Atlas-SNP EXOC2 55770 hgsc.bcm.edu hg19 6 532529 532529 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 EXOC2,NS,carcinoma,0,1 EXOC2 NM_018303 exon23 c.T2320C p.S774P CTAAGGAGCCAAC . 217.0 9.0 144.0 0.0 . 81 . . Atlas-SNP SOX4 6659 hgsc.bcm.edu hg19 6 21595211 21595211 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 SOX4,mouth,carcinoma,0,1 SOX4 NM_003107 exon1 c.C446T p.S149F CCTCCTCCAAGCC . 62.0 3.0 29.0 0.0 . 11 . . Atlas-SNP NOTCH4 4855 hgsc.bcm.edu hg19 6 32191665 32191665 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NOTCH4 NM_004557 exon1 c.T41C p.L14P AGCAGCAGCAGCA . 93.0 4.0 59.0 0.0 . 201 . . Atlas-SNP HLA-DRA 3122 hgsc.bcm.edu hg19 6 32411036 32411036 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 HLA-DRA,NS,carcinoma,0,1 HLA-DRA NM_019111 exon3 c.G403C p.D135H TTCATAGACAAGT . 264.0 0.0 157.0 0.0 . 34 . . Atlas-SNP BRD2 6046 hgsc.bcm.edu hg19 6 32945598 32945598 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BRD2 NM_005104 exon9 c.T1394C p.V465A TACCAGTCTCTAC . 288.0 22.0 205.0 0.0 . 70 . . Atlas-SNP SCUBE3 222663 hgsc.bcm.edu hg19 6 35216340 35216340 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SCUBE3 NM_152753 exon22 c.A2840G p.K947R ACAAGAAGCTCAT . 86.0 4.0 56.0 0.0 . 99 . . Atlas-SNP TREML4 285852 hgsc.bcm.edu hg19 6 41196606 41196606 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 TREML4,NS,carcinoma,0,1 TREML4 NM_198153 exon2 c.G218C p.W73S AGCCCTGGACAGC . 138.0 0.0 95.0 0.0 . 25 . . Atlas-SNP CUL7 9820 hgsc.bcm.edu hg19 6 43017756 43017756 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CUL7 NM_001168370 exon6 c.A1766G p.D589G GGTCCATCCAGCT . 97.0 5.0 70.0 0.0 . 133 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 66094287 66094287 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EYS NM_001142801 exon8 c.A1291G p.R431G TGAATCTTCCAAT . 77.0 4.0 42.0 0.0 . 527 . . Atlas-SNP LMBRD1 55788 hgsc.bcm.edu hg19 6 70490443 70490443 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LMBRD1 NM_018368 exon3 c.T250C p.W84R TAGCCCAGTCCTA . 52.0 4.0 40.0 0.0 . 61 . . Atlas-SNP DPPA5 340168 hgsc.bcm.edu hg19 6 74063604 74063604 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DPPA5 NM_001025290 exon2 c.T264C p.A88A CCACTCAGCCATG . 134.0 6.0 97.0 0.0 . 23 . . Atlas-SNP FAM46A 55603 hgsc.bcm.edu hg19 6 82459741 82459741 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM46A NM_017633 exon3 c.A1000G p.R334G GTTTTCTCTGCTG . 139.0 6.0 116.0 0.0 . 37 . . Atlas-SNP RARS2 57038 hgsc.bcm.edu hg19 6 88229963 88229963 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RARS2 NM_020320 exon13 c.A1047G p.G349G TTTTTGTCCTTTA . 67.0 4.0 30.0 0.0 . 61 . . Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 101312035 101312035 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ASCC3 NM_006828 exon3 c.A146G p.K49R ATTATCTTCTTCC . 112.0 5.0 75.0 0.0 . 205 . . Atlas-SNP FIG4 9896 hgsc.bcm.edu hg19 6 110112750 110112750 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FIG4 NM_014845 exon20 c.A2352G p.A784A TGATGCAGGAGAC . 55.0 4.0 54.0 0.0 . 77 . . Atlas-SNP HS3ST5 222537 hgsc.bcm.edu hg19 6 114383906 114383906 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HS3ST5 NM_153612 exon1 c.A104G p.D35G CACCTATCCAAGC . 117.0 6.0 77.0 0.0 . 80 . . Atlas-SNP RWDD1 51389 hgsc.bcm.edu hg19 6 116901503 116901503 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RWDD1 NM_015952 exon2 c.A119G p.E40G CGTCTGAGGCTGG . 68.0 4.0 41.0 0.0 . 21 . . Atlas-SNP TRDN 10345 hgsc.bcm.edu hg19 6 123594509 123594509 + Splice_Site SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRDN NM_006073 exon29 c.1598-1G>A . ATATAGCTAAAAT . 76.0 6.0 33.0 0.0 . 88 . . Atlas-SNP TRDN 10345 hgsc.bcm.edu hg19 6 123594510 123594510 + Splice_Site SNP T T A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRDN NM_006073 exon29 c.1598-2A>T . TATAGCTAAAATA . 74.0 5.0 32.0 0.0 . 88 . . Atlas-SNP TPD52L1 7164 hgsc.bcm.edu hg19 6 125541327 125541327 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TPD52L1 NM_001003396 exon2 c.A123G p.A41A AAAAGCAGAGTTA . 121.0 5.0 95.0 0.0 . 14 . . Atlas-SNP HINT3 135114 hgsc.bcm.edu hg19 6 126278232 126278232 + Missense_Mutation SNP A A C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HINT3 NM_138571 exon1 c.A109C p.K37Q GCTGGCAAGTCAC . 187.0 8.0 117.0 0.0 . 14 . . Atlas-SNP TRMT11 60487 hgsc.bcm.edu hg19 6 126319442 126319442 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRMT11 NM_001031712 exon5 c.A368G p.E123G AAGAAGAGAAAAT . 64.0 4.0 54.0 0.0 . 43 . . Atlas-SNP C6orf58 352999 hgsc.bcm.edu hg19 6 127902409 127902409 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C6orf58 NM_001010905 exon4 c.T656C p.I219T ATAATATCAAAAG . 59.0 4.0 43.0 0.0 . 35 . . Atlas-SNP PTPRK 5796 hgsc.bcm.edu hg19 6 128388715 128388715 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PTPRK NM_001135648 exon12 c.T2106C p.A702A GCGCGGAGCCAAA . 82.0 4.0 45.0 0.0 . 330 . . Atlas-SNP PBOV1 59351 hgsc.bcm.edu hg19 6 138539188 138539188 + Silent SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PBOV1 NM_021635 exon1 c.G345A p.Q115Q TAGGGTCTGAGTT . 274.0 15.0 205.0 0.0 . 12 . . Atlas-SNP PHACTR2 9749 hgsc.bcm.edu hg19 6 144086851 144086851 + Missense_Mutation SNP A A G rs372509172 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PHACTR2 NM_001100164 exon6 c.A1148G p.Q383R CAAGTCAGCTTCT . 73.0 4.0 60.0 0.0 . 99 . . Atlas-SNP RAET1L 154064 hgsc.bcm.edu hg19 6 150343212 150343212 + Missense_Mutation SNP T T G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 RAET1L,NS,carcinoma,0,2 RAET1L NM_130900 exon2 c.A253C p.M85L AGGCCATTGTGAC . 354.0 0.0 208.0 1.0 . 21 . . Atlas-SNP AKAP12 9590 hgsc.bcm.edu hg19 6 151672185 151672185 + Missense_Mutation SNP A A G rs61748676 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AKAP12 NM_005100 exon4 c.A2659G p.S887G AGCGAGAGTCAGG . 123.0 6.0 84.0 0.0 . 170 . A|0.978;T|0.022 Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152589207 152589207 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SYNE1 NM_182961 exon100 c.A18799G p.T6267A CAGAGGTCTCTGC . 112.0 5.0 92.0 0.0 . 3227 . . Atlas-SNP CLDN20 49861 hgsc.bcm.edu hg19 6 155596902 155596902 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 CLDN20,NS,carcinoma,0,1 CLDN20 NM_001001346 exon2 c.G49C p.G17R TTATCTGGGGTCT . 231.0 0.0 177.0 0.0 . 10 . . Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157099949 157099949 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARID1B NM_017519 exon1 c.A886G p.N296D CAGTGCAACCATT . 37.0 4.0 23.0 0.0 . 320 . . Atlas-SNP TAGAP 117289 hgsc.bcm.edu hg19 6 159464683 159464683 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TAGAP NM_138810 exon4 c.A86G p.D29G TTGATATCACCCT . 159.0 7.0 103.0 0.0 . 75 . . Atlas-SNP SLC22A2 6582 hgsc.bcm.edu hg19 6 160671613 160671613 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC22A2 NM_003058 exon3 c.A640G p.S214G CTTTGCTGACCAG . 87.0 4.0 125.0 0.0 . 78 . . Atlas-SNP LPA 4018 hgsc.bcm.edu hg19 6 161022116 161022116 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LPA NM_005577 exon20 c.A2960G p.N987S CAGTAGTTCTTGA . 73.0 4.0 136.0 0.0 . 237 . . Atlas-SNP DLL1 28514 hgsc.bcm.edu hg19 6 170592565 170592565 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 DLL1,caecum,carcinoma,0,1 DLL1 NM_005618 exon9 c.A1802G p.D601G GAGATGTCCTTCT . 108.0 5.0 44.0 0.0 . 72 . . Atlas-SNP PDCD2 5134 hgsc.bcm.edu hg19 6 170886715 170886715 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PDCD2 NM_002598 exon6 c.A967G p.S323G TGCAGCTCTCAGC . 167.0 7.0 103.0 0.0 . 13 . . Atlas-SNP FOXK1 221937 hgsc.bcm.edu hg19 7 4722303 4722303 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FOXK1 NM_001037165 exon1 c.A364G p.S122G CAGCCCAGCGTCA . 78.0 5.0 66.0 0.0 . 64 . . Atlas-SNP ABCB5 340273 hgsc.bcm.edu hg19 7 20698161 20698161 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABCB5 NM_001163941 exon14 c.T1569C p.A523A AGGAGCTCAAATG . 83.0 6.0 89.0 0.0 . 357 . . Atlas-SNP RFC2 5982 hgsc.bcm.edu hg19 7 73651756 73651756 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RFC2 NM_181471 exon9 c.A776G p.H259R AGTGGGTGGGGCT . 123.0 5.0 63.0 0.0 . 27 . . Atlas-SNP HIP1 3092 hgsc.bcm.edu hg19 7 75221727 75221727 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HIP1 NM_005338 exon3 c.A290G p.H97R AACACATGGCAGA . 92.0 4.0 77.0 0.0 . 91 . . Atlas-SNP GNAT3 346562 hgsc.bcm.edu hg19 7 80103636 80103636 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GNAT3 NM_001102386 exon5 c.T521C p.V174A TGGAGAACATCTT . 95.0 4.0 90.0 0.0 . 65 . . Atlas-SNP SEMA3D 223117 hgsc.bcm.edu hg19 7 84644405 84644405 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SEMA3D NM_152754 exon14 c.C1673T p.A558V GAGCATGCATTTC . 157.0 34.0 148.0 0.0 . 177 . . Atlas-SNP AKAP9 10142 hgsc.bcm.edu hg19 7 91726654 91726654 + Missense_Mutation SNP T T A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AKAP9 NM_005751 exon41 c.T10381A p.Y3461N ATTCTGTATCAGA . 56.0 4.0 40.0 0.0 . 788 . . Atlas-SNP CYP3A4 1576 hgsc.bcm.edu hg19 7 99364063 99364063 + Nonsense_Mutation SNP G G A rs138105638 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CYP3A4 NM_017460 exon9 c.C802T p.R268X CCACTCGGTGCTA . 187.0 26.0 159.0 0.0 . 56 . G|1.000;A|0.000 Atlas-SNP ATXN7L1 222255 hgsc.bcm.edu hg19 7 105283324 105283324 + Missense_Mutation SNP C C G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATXN7L1 NM_020725 exon5 c.G823C p.G275R TGGTGCCATTTTG . 475.0 126.0 309.0 0.0 . 56 . . Atlas-SNP CCDC136 64753 hgsc.bcm.edu hg19 7 128455707 128455707 + Missense_Mutation SNP A A C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCDC136 NM_022742 exon16 c.A3085C p.K1029Q CAGAGGAAATTAG . 146.0 73.0 102.0 0.0 . 170 . . Atlas-SNP EXOC4 60412 hgsc.bcm.edu hg19 7 133580480 133580480 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EXOC4 NM_021807 exon12 c.A1863G p.A621A CACTGCAGCTTAC . 131.0 6.0 87.0 0.0 . 118 . . Atlas-SNP CNTNAP2 26047 hgsc.bcm.edu hg19 7 147844667 147844667 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CNTNAP2 NM_014141 exon17 c.A2639G p.D880G ACGATGACCAGTG . 117.0 5.0 87.0 0.0 . 392 . . Atlas-SNP ZNF777 27153 hgsc.bcm.edu hg19 7 149152609 149152609 + Missense_Mutation SNP A A G rs3823695 alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF777 NM_015694 exon2 c.T505C p.S169P CAGAAGAGATCTG . 103.0 5.0 66.0 0.0 . 63 . . Atlas-SNP ABCB8 11194 hgsc.bcm.edu hg19 7 150739104 150739104 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABCB8 NM_007188 exon14 c.A1674G p.E558E GCTGGAAGCTTCC . 95.0 4.0 51.0 0.0 . 65 . . Atlas-SNP WDR60 55112 hgsc.bcm.edu hg19 7 158719144 158719144 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDR60 NM_018051 exon19 c.T2423C p.L808P GGGTTCTCAATGT . 195.0 8.0 134.0 0.0 . 94 . . Atlas-SNP ZDHHC2 51201 hgsc.bcm.edu hg19 8 17067945 17067945 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZDHHC2 NM_016353 exon10 c.T906C p.P302P GGATCCTGAACAA . 63.0 4.0 74.0 0.0 . 25 . . Atlas-SNP INTS10 55174 hgsc.bcm.edu hg19 8 19675087 19675087 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . INTS10 NM_018142 exon1 c.A39G p.R13R GCAGCGAGCCCGG . 61.0 4.0 89.0 0.0 . 46 . . Atlas-SNP PDLIM2 64236 hgsc.bcm.edu hg19 8 22452076 22452076 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PDLIM2 NM_176871 exon10 c.T1015C p.S339P AGATTGTCACTGG . 57.0 4.0 85.0 0.0 . 42 . . Atlas-SNP DOCK5 80005 hgsc.bcm.edu hg19 8 25182970 25182970 + Nonsense_Mutation SNP A A T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DOCK5 NM_024940 exon18 c.A1810T p.K604X GCATCCAAAAACC . 137.0 7.0 167.0 0.0 . 167 . . Atlas-SNP PBK 55872 hgsc.bcm.edu hg19 8 27668599 27668599 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PBK NM_018492 exon7 c.A648G p.E216E CACAGCTTCTTTG . 94.0 4.0 139.0 0.0 . 29 . . Atlas-SNP KIF13B 23303 hgsc.bcm.edu hg19 8 28928094 28928094 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIF13B NM_015254 exon40 c.C5408T p.S1803L GTCAGCGAGGCCA . 47.0 4.0 78.0 0.0 . 192 . . Atlas-SNP KIF13B 23303 hgsc.bcm.edu hg19 8 28999714 28999714 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIF13B NM_015254 exon19 c.A2294G p.D765G TAAAGGTCTCTCA . 78.0 5.0 97.0 0.0 . 192 . . Atlas-SNP TEX15 56154 hgsc.bcm.edu hg19 8 30703400 30703400 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TEX15 NM_031271 exon1 c.A3134G p.D1045G TGAAGGTCACAAC . 69.0 4.0 99.0 0.0 . 350 . . Atlas-SNP WHSC1L1 54904 hgsc.bcm.edu hg19 8 38178646 38178646 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WHSC1L1 NM_017778 exon8 c.T1753C p.S585P ATTCAGAACGAGT . 82.0 4.0 83.0 0.0 . 137 . . Atlas-SNP ARFGEF1 10565 hgsc.bcm.edu hg19 8 68113709 68113709 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARFGEF1 NM_006421 exon37 c.C5260G p.L1754V TCAAAAGCCTCTG . 349.0 17.0 106.0 0.0 . 196 . . Atlas-SNP OC90 729330 hgsc.bcm.edu hg19 8 133036828 133036828 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 OC90_ENST00000262283,caecum,carcinoma,0,2 OC90 NM_001080399 exon14 c.A1334G p.D445G TCGCTGTCCTCCT . 187.0 10.0 52.0 0.0 . 163 . . Atlas-SNP PTK2 5747 hgsc.bcm.edu hg19 8 141749131 141749131 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PTK2 NM_005607 exon21 c.A1877G p.D626G CATACGTCACTAG . 116.0 5.0 26.0 0.0 . 311 . . Atlas-SNP EPPK1 83481 hgsc.bcm.edu hg19 8 144940597 144940597 + Silent SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EPPK1 NM_031308 exon1 c.C6825T p.P2275P GCGCACGGGGTCG . 39.0 4.0 1.0 0.0 . 199 . . Atlas-SNP KIFC2 90990 hgsc.bcm.edu hg19 8 145693366 145693366 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIFC2 NM_145754 exon7 c.C806T p.P269L GGGCTCCGCAGGT . 218.0 25.0 42.0 0.0 . 53 . . Atlas-SNP RFX3 5991 hgsc.bcm.edu hg19 9 3275558 3275558 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RFX3 NM_134428 exon10 c.A1028G p.D343G GTACCATCTGGCA . 68.0 4.0 88.0 0.0 . 156 . . Atlas-SNP KIAA2026 158358 hgsc.bcm.edu hg19 9 5921058 5921058 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIAA2026 NM_001017969 exon8 c.A4938G p.S1646S TCTTGCTGAAGAA . 72.0 5.0 51.0 0.0 . 231 . . Atlas-SNP MPDZ 8777 hgsc.bcm.edu hg19 9 13125334 13125334 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MPDZ NM_003829 exon35 c.A4688G p.E1563G GGATTCTCAGCAT . 114.0 6.0 135.0 0.0 . 324 . . Atlas-SNP FREM1 158326 hgsc.bcm.edu hg19 9 14863881 14863881 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FREM1 NM_144966 exon4 c.T255C p.L85L GTTGGGAAGGAAA . 100.0 4.0 112.0 0.0 . 261 . . Atlas-SNP DENND4C 55667 hgsc.bcm.edu hg19 9 19346888 19346888 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 DENND4C,colon,carcinoma,0,1 DENND4C NM_017925 exon22 c.C3974T p.S1325F CAACTTCTTTGTC . 72.0 4.0 36.0 0.0 . 120 . . Atlas-SNP ACO1 48 hgsc.bcm.edu hg19 9 32425907 32425907 + Silent SNP T T G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ACO1_ENST00000379923,NS,carcinoma,0,2 ACO1 NM_002197 exon11 c.T1260G p.T420T TAACACTGAATTC . 97.0 4.0 121.0 0.0 . 149 . . Atlas-SNP CHMP5 51510 hgsc.bcm.edu hg19 9 33271180 33271180 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CHMP5 NM_016410 exon5 c.A346G p.M116V AAGGAAATGAAGA . 82.0 6.0 64.0 0.0 . 15 . . Atlas-SNP NFX1 4799 hgsc.bcm.edu hg19 9 33295418 33295418 + Silent SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NFX1 NM_147134 exon2 c.G1026A p.T342T GGAAACGCACACA . 33.0 14.0 27.0 0.0 . 85 . . Atlas-SNP C9orf24 84688 hgsc.bcm.edu hg19 9 34385753 34385753 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C9orf24 NM_032596 exon2 c.T162C p.H54H ATCCACATGTCGC . 95.0 4.0 95.0 0.0 . 15 . . Atlas-SNP SIGMAR1 10280 hgsc.bcm.edu hg19 9 34635688 34635688 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SIGMAR1 NM_005866 exon4 c.T613C p.S205P CATAGGAGCGAAG . 161.0 7.0 134.0 0.0 . 6 . . Atlas-SNP TLN1 7094 hgsc.bcm.edu hg19 9 35717439 35717439 + Splice_Site SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TLN1 NM_006289 exon20 c.2164-2A>G . ACCACCTGTAGGT . 73.0 4.0 66.0 0.0 . 185 . . Atlas-SNP HRCT1 646962 hgsc.bcm.edu hg19 9 35906303 35906303 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HRCT1 NM_001039792 exon1 c.A19G p.S7G CTGGGGAGCACAG . 100.0 7.0 68.0 0.0 . 14 . . Atlas-SNP FRMPD1 22844 hgsc.bcm.edu hg19 9 37707505 37707505 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FRMPD1 NM_014907 exon3 c.T194C p.L65P ACACCCTCCTCCA . 86.0 4.0 72.0 0.0 . 237 . . Atlas-SNP PSAT1 29968 hgsc.bcm.edu hg19 9 80923403 80923403 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PSAT1 NM_021154 exon6 c.A644G p.D215G GTGATGACCTGCT . 145.0 6.0 192.0 0.0 . 33 . . Atlas-SNP UBQLN1 29979 hgsc.bcm.edu hg19 9 86284243 86284243 + Splice_Site SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UBQLN1 NM_013438 exon8 c.1106-1G>A . TACTAGCTGAAAG . 80.0 5.0 78.0 0.0 . 49 . . Atlas-SNP SLC28A3 64078 hgsc.bcm.edu hg19 9 86920237 86920237 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 SLC28A3,NS,carcinoma,0,1 SLC28A3 NM_001199633 exon4 c.C266G p.T89R CATACTGTGTCAT . 145.0 0.0 114.0 0.0 . 72 . . Atlas-SNP COL15A1 1306 hgsc.bcm.edu hg19 9 101765842 101765842 + Silent SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 COL15A1,NS,carcinoma,0,1 COL15A1 NM_001855 exon8 c.G1173T p.T391T GTCCACGGAGAAC . 196.0 0.0 180.0 1.0 . 211 . . Atlas-SNP MSANTD3-TMEFF1 100526694 hgsc.bcm.edu hg19 9 103279042 103279042 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_001198812 exon5 c.A771G p.A257A AGATGCAGAAAAT . 113.0 5.0 86.0 0.0 . . . . Atlas-SNP RNF20 56254 hgsc.bcm.edu hg19 9 104323165 104323165 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RNF20 NM_019592 exon17 c.A2465G p.E822G AGAAAGAGCTGGG . 134.0 6.0 101.0 0.0 . 110 . . Atlas-SNP RAD23B 5887 hgsc.bcm.edu hg19 9 110091920 110091920 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RAD23B NM_002874 exon10 c.A1213G p.N405D CAGCAGAACTTTG . 71.0 4.0 85.0 0.0 . 31 . . Atlas-SNP RABGAP1 23637 hgsc.bcm.edu hg19 9 125835865 125835865 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RABGAP1 NM_012197 exon16 c.A2018G p.K673R TGGTCAAGATCAT . 96.0 4.0 126.0 0.0 . 164 . . Atlas-SNP WDR38 401551 hgsc.bcm.edu hg19 9 127619900 127619900 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDR38 NM_001276374 exon9 c.T939C p.P313P GGACCCTCAAACC . 95.0 4.0 50.0 0.0 . 21 . . Atlas-SNP NUP214 8021 hgsc.bcm.edu hg19 9 134015961 134015961 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NUP214 NM_005085 exon11 c.T1158C p.A386A TCCTGCTCCAGTT . 112.0 5.0 88.0 0.0 . 166 . . Atlas-SNP C9orf171 389799 hgsc.bcm.edu hg19 9 135374145 135374145 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C9orf171 NM_207417 exon3 c.C367T p.L123F TATGGACTCTACA . 52.0 5.0 51.0 0.0 . 53 . . Atlas-SNP SDCCAG3 10807 hgsc.bcm.edu hg19 9 139301956 139301956 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SDCCAG3 NM_001039707 exon5 c.G460A p.G154R CATACCCGCCGGT . 72.0 4.0 50.0 0.0 . 41 . . Atlas-SNP ABCA2 20 hgsc.bcm.edu hg19 9 139906582 139906582 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABCA2 NM_212533 exon34 c.A5422G p.T1808A CGCTGGTCTTATT . 83.0 6.0 56.0 0.0 . 113 . . Atlas-SNP CACNA1B 774 hgsc.bcm.edu hg19 9 140772543 140772543 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CACNA1B NM_001243812 exon1 c.C158T p.A53V AGCGCGCGCGGAC . 170.0 75.0 99.0 0.0 . 266 . . Atlas-SNP FAM208B 54906 hgsc.bcm.edu hg19 10 5803302 5803302 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_017782 exon19 c.A7042G p.S2348G TTTCAGAGTGCAA . 113.0 5.0 127.0 0.0 . . . . Atlas-SNP TAF3 83860 hgsc.bcm.edu hg19 10 8007022 8007022 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TAF3 NM_031923 exon3 c.T1549C p.S517P CTGCCTTCCTCCG . 85.0 4.0 82.0 0.0 . 93 . . Atlas-SNP TAF3 83860 hgsc.bcm.edu hg19 10 8007368 8007368 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 TAF3,NS,carcinoma,0,1 TAF3 NM_031923 exon3 c.A1895G p.K632R AAGATAAGAGAGA . 37.0 2.0 28.0 0.0 . 93 . . Atlas-SNP OPTN 10133 hgsc.bcm.edu hg19 10 13152401 13152401 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 OPTN,NS,carcinoma,0,1 OPTN NM_001008212 exon4 c.G294A p.M98I TCTAATGGCCTTG . 155.0 0.0 149.0 0.0 . 57 . . Atlas-SNP FRMD4A 55691 hgsc.bcm.edu hg19 10 13838525 13838525 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FRMD4A NM_018027 exon5 c.A270G p.S90S GGGTCCTGACTTT . 84.0 4.0 64.0 0.0 . 108 . . Atlas-SNP NSUN6 221078 hgsc.bcm.edu hg19 10 18837156 18837156 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NSUN6 NM_182543 exon10 c.T1082C p.L361P TTCAGCAGCTGAA . 92.0 4.0 105.0 0.0 . 46 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26462846 26462846 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYO3A NM_017433 exon30 c.T3653C p.V1218A AGTCTGTCAAAGA . 106.0 5.0 90.0 0.0 . 371 . . Atlas-SNP SVIL 6840 hgsc.bcm.edu hg19 10 29839664 29839664 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SVIL NM_003174 exon8 c.T689C p.F230S AAAGAGAAGGTCG . 81.0 5.0 70.0 0.0 . 226 . . Atlas-SNP EGR2 1959 hgsc.bcm.edu hg19 10 64573486 64573486 + Silent SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 EGR2,colon,carcinoma,0,4 EGR2 NM_000399 exon2 c.C912A p.A304A GGCGGCGGCTGCT . 60.0 3.0 33.0 0.0 . 77 . . Atlas-SNP JMJD1C 221037 hgsc.bcm.edu hg19 10 64967219 64967219 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . JMJD1C NM_032776 exon10 c.G4210A p.D1404N TAGTATCGGCAGC . 100.0 4.0 113.0 0.0 . 347 . . Atlas-SNP PPA1 5464 hgsc.bcm.edu hg19 10 71969413 71969413 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PPA1 NM_021129 exon7 c.T540C p.P180P GTAGCCAGGTTTC . 238.0 18.0 211.0 0.0 . 24 . . Atlas-SNP PLA2G12B 84647 hgsc.bcm.edu hg19 10 74702445 74702445 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLA2G12B NM_032562 exon2 c.G265T p.G89C AGGAGCCGCAGCC . 61.0 27.0 58.0 0.0 . 19 . . Atlas-SNP ZMIZ1 57178 hgsc.bcm.edu hg19 10 81058316 81058316 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ZMIZ1,right_upper_lobe,carcinoma,0,1 ZMIZ1 NM_020338 exon15 c.A1645G p.S549G AATATGAGCGCTC . 77.0 4.0 73.0 0.0 . 101 . . Atlas-SNP PCGF5 84333 hgsc.bcm.edu hg19 10 93000241 93000241 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PCGF5 NM_001256549 exon3 c.T113C p.F38S TCTTAGTCTGTAA . 58.0 4.0 76.0 0.0 . 29 . . Atlas-SNP ARHGAP19 84986 hgsc.bcm.edu hg19 10 99025639 99025639 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARHGAP19 NM_001204300 exon2 c.T300C p.S100S CATGAGAGACCGG . 84.0 4.0 62.0 0.0 . 72 . . Atlas-SNP SEC31B 25956 hgsc.bcm.edu hg19 10 102275905 102275905 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SEC31B NM_015490 exon3 c.A151G p.R51G GGTCCCTGAAATC . 91.0 4.0 116.0 0.0 . 84 . . Atlas-SNP PDZD7 79955 hgsc.bcm.edu hg19 10 102777929 102777929 + Silent SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PDZD7 NM_001195263 exon9 c.C1449T p.D483D GCGCCCGTCCCGC . 138.0 39.0 104.0 0.0 . 101 . . Atlas-SNP FBXW4 6468 hgsc.bcm.edu hg19 10 103433426 103433426 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FBXW4 NM_022039 exon3 c.A361G p.M121V AGGGCATCTGACT . 90.0 4.0 85.0 0.0 . 39 . . Atlas-SNP TMEM180 79847 hgsc.bcm.edu hg19 10 104230585 104230585 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TMEM180 NM_024789 exon5 c.A415G p.T139A TTCCTGACGCTCG . 123.0 5.0 103.0 0.0 . 33 . . Atlas-SNP PDCD11 22984 hgsc.bcm.edu hg19 10 105174798 105174798 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PDCD11 NM_014976 exon12 c.G1408A p.V470M ATGCTGGTGAAGG . 151.0 48.0 110.0 0.0 . 160 . . Atlas-SNP WDR96 80217 hgsc.bcm.edu hg19 10 105971830 105971830 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDR96 NM_025145 exon5 c.T670C p.Y224H GACCATAGATGAG . 64.0 4.0 72.0 0.0 . 183 . . Atlas-SNP CCDC147 159686 hgsc.bcm.edu hg19 10 106121791 106121791 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCDC147 NM_001008723 exon3 c.A302G p.K101R TTGAAAAGGCCTG . 90.0 4.0 56.0 0.0 . 137 . . Atlas-SNP XPNPEP1 7511 hgsc.bcm.edu hg19 10 111635319 111635319 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . XPNPEP1 NM_020383 exon15 c.A1358G p.E453G TACACCTCATCCA . 90.0 5.0 112.0 0.0 . 110 . . Atlas-SNP GPAM 57678 hgsc.bcm.edu hg19 10 113935417 113935417 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GPAM NM_001244949 exon6 c.A354G p.R118R CACATCTCGCTCT . 60.0 4.0 73.0 0.0 . 68 . . Atlas-SNP FAM160B1 57700 hgsc.bcm.edu hg19 10 116608429 116608429 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM160B1 NM_020940 exon13 c.A1736G p.D579G CGGATGACGCAAA . 99.0 4.0 94.0 0.0 . 107 . . Atlas-SNP PNLIPRP3 119548 hgsc.bcm.edu hg19 10 118231366 118231366 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PNLIPRP3 NM_001011709 exon10 c.A1147G p.K383E GTTAGGAAAACTG . 118.0 6.0 132.0 0.0 . 101 . . Atlas-SNP TACC2 10579 hgsc.bcm.edu hg19 10 124008566 124008566 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TACC2 NM_206862 exon21 c.A8555G p.N2852S GTCAGAATGAAGA . 77.0 4.0 87.0 0.0 . 271 . . Atlas-SNP DMBT1 1755 hgsc.bcm.edu hg19 10 124402895 124402895 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 DMBT1_ENST00000368915,colon,carcinoma,0,3 DMBT1 NM_007329 exon53 c.G7223A p.R2408Q CACGCCGAGAAGA . 165.0 50.0 117.0 0.0 . 677 . . Atlas-SNP PSTK 118672 hgsc.bcm.edu hg19 10 124742793 124742793 + Missense_Mutation SNP T T A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 PSTK,NS,lymphoid_neoplasm,0,1 PSTK NM_153336 exon3 c.T514A p.L172M GATTCGTTGGGCT . 104.0 0.0 94.0 0.0 . 34 . . Atlas-SNP MUC2 4583 hgsc.bcm.edu hg19 11 1094691 1094691 + Missense_Mutation SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MUC2 NM_002457 exon32 c.G5767T p.G1923W ACGACCGGGTCAT . 164.0 7.0 101.0 0.0 . 614 . . Atlas-SNP OR51A7 119687 hgsc.bcm.edu hg19 11 4929062 4929062 + Missense_Mutation SNP T T G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 OR51A7,NS,carcinoma,0,1 OR51A7 NM_001004749 exon1 c.T463G p.L155V ATTCTCTTAGTGA . 149.0 0.0 94.0 0.0 . 86 . . Atlas-SNP CNGA4 1262 hgsc.bcm.edu hg19 11 6265177 6265177 + Splice_Site SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CNGA4 NM_001037329 exon6 c.1268-2A>G . AGCCACAGGGAAC . 46.0 4.0 32.0 0.0 . 96 . . Atlas-SNP TRIM3 10612 hgsc.bcm.edu hg19 11 6472208 6472208 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRIM3 NM_001248006 exon9 c.A1784G p.K595R CAAGACTTGTTGT . 93.0 4.0 55.0 0.0 . 67 . . Atlas-SNP DCHS1 8642 hgsc.bcm.edu hg19 11 6653852 6653852 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DCHS1 NM_003737 exon6 c.A2891G p.H964R AGCTCATGGGCTG . 86.0 4.0 38.0 0.0 . 277 . . Atlas-SNP PIK3C2A 5286 hgsc.bcm.edu hg19 11 17113160 17113160 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PIK3C2A NM_002645 exon30 c.T4686C p.A1562A TTTCACAGCTCCT . 170.0 7.0 134.0 0.0 . 148 . . Atlas-SNP HPS5 11234 hgsc.bcm.edu hg19 11 18305405 18305405 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HPS5 NM_181507 exon21 c.A2995G p.R999G CTCTTCTTCTCTC . 89.0 4.0 47.0 0.0 . 70 . . Atlas-SNP PTPN5 84867 hgsc.bcm.edu hg19 11 18763990 18763990 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 PTPN5_ENST00000358540,NS,carcinoma,0,2 PTPN5 NM_032781 exon7 c.C544T p.R182C ACTGGCGCCTGTC . 120.0 59.0 95.0 0.0 . 163 . . Atlas-SNP TCP11L1 55346 hgsc.bcm.edu hg19 11 33079469 33079469 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TCP11L1 NM_001145541 exon5 c.T422C p.L141P AGACTCTCTTATC . 96.0 4.0 77.0 0.0 . 40 . . Atlas-SNP TCP11L1 55346 hgsc.bcm.edu hg19 11 33083146 33083146 + Silent SNP C C T rs145755006 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 TCP11L1_ENST00000324357,NS,carcinoma,0,2 TCP11L1 NM_001145541 exon7 c.C846T p.H282H TAAACACGCCCTG . 123.0 29.0 92.0 0.0 . 40 . C|1.000;T|0.000 Atlas-SNP LDLRAD3 143458 hgsc.bcm.edu hg19 11 36119988 36119988 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LDLRAD3 NM_174902 exon4 c.A431G p.E144G GTGATGAGGAAAG . 123.0 5.0 56.0 0.0 . 52 . . Atlas-SNP OR8I2 120586 hgsc.bcm.edu hg19 11 55861691 55861691 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR8I2 NM_001003750 exon1 c.T908C p.V303A TGAGAGTCATACA . 48.0 4.0 24.0 0.0 . 119 . . Atlas-SNP OR8J1 219477 hgsc.bcm.edu hg19 11 56128630 56128630 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR8J1 NM_001005205 exon1 c.A908G p.Q303R CTCTACAGAGATT . 125.0 5.0 76.0 0.0 . 87 . . Atlas-SNP OR5M11 219487 hgsc.bcm.edu hg19 11 56310224 56310224 + Silent SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR5M11 NM_001005245 exon1 c.C510A p.S170S GACACTGGATCTA . 131.0 7.0 84.0 0.0 . 60 . . Atlas-SNP SERPING1 710 hgsc.bcm.edu hg19 11 57367406 57367406 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SERPING1 NM_001032295 exon2 c.A106G p.S36G CCAGAGAGTTTGC . 156.0 7.0 96.0 0.0 . 57 . . Atlas-SNP FADS3 3995 hgsc.bcm.edu hg19 11 61658711 61658711 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FADS3 NM_021727 exon1 c.T143C p.I48T CGGCTGATGTCGT . 96.0 4.0 43.0 0.0 . 29 . . Atlas-SNP FERMT3 83706 hgsc.bcm.edu hg19 11 63988014 63988014 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FERMT3 NM_178443 exon12 c.T1430C p.L477P CCTTCCTCAGCCT . 94.0 4.0 46.0 0.0 . 51 . . Atlas-SNP SCYL1 57410 hgsc.bcm.edu hg19 11 65294460 65294460 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SCYL1 NM_020680 exon6 c.T721C p.C241R CATTACTGTGAGC . 143.0 6.0 120.0 0.0 . 76 . . Atlas-SNP MYEOV 26579 hgsc.bcm.edu hg19 11 69063723 69063723 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 MYEOV NM_138768 exon3 c.T806C p.L269P AGGCCCTGGGGGG . 145.0 8.0 86.0 2.0 . 42 . . Atlas-SNP RNF121 55298 hgsc.bcm.edu hg19 11 71671841 71671841 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RNF121 NM_018320 exon3 c.T147C p.A49A TGAAGCTATGCAT . 119.0 5.0 85.0 0.0 . 19 . . Atlas-SNP C11orf30 56946 hgsc.bcm.edu hg19 11 76255832 76255832 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C11orf30 NM_020193 exon19 c.T3239C p.L1080P TGTCGCTCCCAGC . 63.0 4.0 55.0 0.0 . 123 . . Atlas-SNP NARS2 79731 hgsc.bcm.edu hg19 11 78154722 78154722 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NARS2 NM_024678 exon12 c.A1247G p.E416G CGCTCCTCTAAGA . 82.0 4.0 75.0 0.0 . 62 . . Atlas-SNP PCF11 51585 hgsc.bcm.edu hg19 11 82877693 82877693 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PCF11 NM_015885 exon5 c.T1754C p.V585A AGAATGTAGAAAA . 122.0 58.0 100.0 0.0 . 220 . . Atlas-SNP KIAA1731 85459 hgsc.bcm.edu hg19 11 93412715 93412715 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIAA1731 NM_033395 exon7 c.T762C p.A254A TTTGGCTCAAGTA . 134.0 6.0 68.0 0.0 . 173 . . Atlas-SNP PANX1 24145 hgsc.bcm.edu hg19 11 93912932 93912932 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PANX1 NM_015368 exon4 c.T710C p.L237P TCAGCCTCTCCTC . 117.0 7.0 90.0 0.0 . 38 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 102991458 102991458 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DYNC2H1 NM_001377 exon8 c.T1175C p.I392T AGATTATTGCACC . 72.0 4.0 38.0 0.0 . 246 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103153740 103153740 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DYNC2H1 NM_001080463 exon74 c.T10837C p.S3613P AAGGACTCTCAAC . 175.0 7.0 81.0 0.0 . 246 . . Atlas-SNP POU2AF1 5450 hgsc.bcm.edu hg19 11 111225126 111225126 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . POU2AF1 NM_006235 exon5 c.T631C p.S211P GGATAGAGATGGG . 199.0 8.0 155.0 0.0 . 23 . . Atlas-SNP SIK3 23387 hgsc.bcm.edu hg19 11 116744713 116744713 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SIK3 NM_025164 exon12 c.A1313G p.Q438R GGAGCCTGGGGGT . 127.0 31.0 90.0 0.0 . 112 . . Atlas-SNP CEP164 22897 hgsc.bcm.edu hg19 11 117222658 117222658 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 CEP164,caecum,carcinoma,0,1 CEP164 NM_001271933 exon4 c.A347G p.K116R AAAAAAAGGAAAA . 70.0 6.0 38.0 0.0 . 121 . . Atlas-SNP TMPRSS13 84000 hgsc.bcm.edu hg19 11 117782565 117782565 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TMPRSS13 NM_001206790 exon6 c.A820G p.T274A CGGTTGTCCGGTG . 86.0 4.0 52.0 0.0 . 75 . . Atlas-SNP CLMP 79827 hgsc.bcm.edu hg19 11 122968546 122968546 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CLMP NM_024769 exon2 c.A143G p.D48G TCAATATCCAGAG . 127.0 6.0 97.0 0.0 . 39 . . Atlas-SNP NTM 50863 hgsc.bcm.edu hg19 11 132177637 132177637 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NTM NM_001144059 exon4 c.A581G p.E194G CCAGGGAGCAGTC . 115.0 5.0 50.0 0.0 . 253 . . Atlas-SNP TEAD4 7004 hgsc.bcm.edu hg19 12 3128311 3128311 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TEAD4 NM_003213 exon8 c.T558C p.A186A CTATGCTGTCCAG . 92.0 5.0 115.0 0.0 . 45 . . Atlas-SNP PZP 5858 hgsc.bcm.edu hg19 12 9349247 9349247 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PZP NM_002864 exon9 c.A902G p.H301R TTGGTGTGTACTT . 68.0 4.0 84.0 0.0 . 422 . . Atlas-SNP CLEC1B 51266 hgsc.bcm.edu hg19 12 10147781 10147781 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CLEC1B NM_016509 exon5 c.A503G p.E168G CAGACCTCATTCG . 36.0 4.0 56.0 0.0 . 39 . . Atlas-SNP TAS2R8 50836 hgsc.bcm.edu hg19 12 10958681 10958681 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TAS2R8 NM_023918 exon1 c.T899C p.L300P CATGTCAGCATTC . 127.0 7.0 127.0 0.0 . 42 . . Atlas-SNP PLBD1 79887 hgsc.bcm.edu hg19 12 14693776 14693776 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLBD1 NM_024829 exon4 c.A480G p.R160R TGTATGTCTCCAA . 116.0 5.0 170.0 0.0 . 36 . . Atlas-SNP PLCZ1 89869 hgsc.bcm.edu hg19 12 18872429 18872429 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLCZ1 NM_033123 exon5 c.T505C p.S169P TATGTGAAGATGA . 80.0 4.0 104.0 0.0 . 107 . . Atlas-SNP PLCZ1 89869 hgsc.bcm.edu hg19 12 18876315 18876315 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLCZ1 NM_033123 exon4 c.A297G p.E99E ATATTGTTCTTGT . 88.0 4.0 119.0 0.0 . 107 . . Atlas-SNP ABCC9 10060 hgsc.bcm.edu hg19 12 22012588 22012588 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABCC9 NM_005691 exon20 c.A2437G p.S813G CCCCACTCAGGTT . 62.0 5.0 78.0 0.0 . 411 . . Atlas-SNP KRAS 3845 hgsc.bcm.edu hg19 12 25368464 25368464 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KRAS NM_033360 exon5 c.A481G p.R161G TCTCCCTCACCAA . 67.0 4.0 138.0 0.0 . 30930 . . Atlas-SNP ITPR2 3709 hgsc.bcm.edu hg19 12 26809378 26809378 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ITPR2 NM_002223 exon19 c.T2296C p.S766P CATCCGACACACA . 83.0 4.0 104.0 0.0 . 270 . . Atlas-SNP SENP1 29843 hgsc.bcm.edu hg19 12 48477423 48477423 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SENP1 NM_001267594 exon6 c.T503C p.L168P CTCAAAAGACTTC . 100.0 4.0 124.0 0.0 . 44 . . Atlas-SNP CERS5 91012 hgsc.bcm.edu hg19 12 50532384 50532384 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_147190 exon5 c.A509G p.D170G CGGATGTCCCAGA . 109.0 5.0 101.0 0.0 . . . . Atlas-SNP FAM186A 121006 hgsc.bcm.edu hg19 12 50749223 50749223 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM186A NM_001145475 exon4 c.A1392G p.K464K TGTGGCTTTTTTG . 107.0 5.0 78.0 0.0 . 181 . . Atlas-SNP CSAD 51380 hgsc.bcm.edu hg19 12 53553669 53553669 + Splice_Site SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CSAD NM_001244706 exon7 c.519+2T>C . GGTCCTACCTCCA . 101.0 5.0 107.0 0.0 . 66 . . Atlas-SNP ATP5G2 517 hgsc.bcm.edu hg19 12 54063089 54063089 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATP5G2 NM_005176 exon4 c.T325C p.S109P CAAGTGAGGTAAG . 69.0 4.0 62.0 0.0 . 16 . . Atlas-SNP ITGA5 3678 hgsc.bcm.edu hg19 12 54796806 54796806 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ITGA5 NM_002205 exon19 c.A1943G p.D648G ATGTTGTCTTCTC . 113.0 5.0 108.0 0.0 . 99 . . Atlas-SNP DGKA 1606 hgsc.bcm.edu hg19 12 56346928 56346928 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DGKA NM_201554 exon22 c.T2047C p.S683P AAGTGCTCTGAGA . 99.0 6.0 86.0 0.0 . 70 . . Atlas-SNP PA2G4 5036 hgsc.bcm.edu hg19 12 56503708 56503708 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PA2G4 NM_006191 exon7 c.A618G p.T206T TCCCACAGACCAG . 113.0 5.0 105.0 0.0 . 24 . . Atlas-SNP MYL6 4637 hgsc.bcm.edu hg19 12 56553921 56553921 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYL6 NM_079423 exon4 c.T338C p.L113P ATGTTCTTGTCAC . 84.0 4.0 75.0 0.0 . 16 . . Atlas-SNP BAZ2A 11176 hgsc.bcm.edu hg19 12 56997486 56997486 + Splice_Site SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BAZ2A NM_013449 exon18 c.3045-2A>G . TCAGCCTTGAAAT . 77.0 4.0 67.0 0.0 . 263 . . Atlas-SNP KIF5A 3798 hgsc.bcm.edu hg19 12 57974761 57974761 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIF5A NM_004984 exon24 c.T2561C p.L854P CAGATCTGCGTTG . 92.0 4.0 74.0 0.0 . 143 . . Atlas-SNP SRGAP1 57522 hgsc.bcm.edu hg19 12 64472776 64472776 + Silent SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SRGAP1 NM_020762 exon9 c.C1203T p.C401C TGAATGCTTCCAG . 83.0 4.0 78.0 0.0 . 146 . . Atlas-SNP C12orf66 144577 hgsc.bcm.edu hg19 12 64609570 64609570 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C12orf66 NM_152440 exon2 c.A409G p.M137V TCTCCATCCGAGC . 115.0 5.0 117.0 0.0 . 28 . . Atlas-SNP TBC1D15 64786 hgsc.bcm.edu hg19 12 72300901 72300901 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TBC1D15 NM_022771 exon12 c.T1334C p.M445T ACTGTATGTATGA . 97.0 4.0 89.0 0.0 . 99 . . Atlas-SNP SLC6A15 55117 hgsc.bcm.edu hg19 12 85264404 85264404 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC6A15 NM_182767 exon9 c.A1348G p.M450V GTGTCATCGCTTC . 80.0 4.0 97.0 0.0 . 159 . . Atlas-SNP C12orf50 160419 hgsc.bcm.edu hg19 12 88383079 88383079 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C12orf50 NM_152589 exon8 c.A662G p.E221G TCTTTCTCTTCAG . 60.0 4.0 44.0 0.0 . 70 . . Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112694221 112694221 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_001109662 exon21 c.A2798G p.D933G TAGTTGTCTCTGA . 123.0 5.0 87.0 0.0 . . . . Atlas-SNP PTPN11 5781 hgsc.bcm.edu hg19 12 112888306 112888306 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PTPN11 NM_080601 exon3 c.A322G p.T108A GATCCTACCTCTG . 97.0 4.0 70.0 0.0 . 623 . . Atlas-SNP HIP1R 9026 hgsc.bcm.edu hg19 12 123340451 123340451 + Splice_Site SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HIP1R NM_003959 exon13 c.1128+1G>T . CTGGAGGTGCGGG . 118.0 7.0 85.0 0.0 . 68 . . Atlas-SNP HIP1R 9026 hgsc.bcm.edu hg19 12 123340452 123340452 + Splice_Site SNP T T G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HIP1R NM_003959 exon13 c.1128+2T>G . TGGAGGTGCGGGG . 115.0 9.0 84.0 0.0 . 68 . . Atlas-SNP VPS37B 79720 hgsc.bcm.edu hg19 12 123352099 123352099 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VPS37B NM_024667 exon4 c.T422C p.V141A TGATAGACATCAA . 86.0 4.0 80.0 0.0 . 26 . . Atlas-SNP CENPJ 55835 hgsc.bcm.edu hg19 13 25480336 25480336 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CENPJ NM_018451 exon7 c.T1840C p.S614P TGGAAGACATCCG . 87.0 6.0 103.0 0.0 . 116 . . Atlas-SNP STARD13 90627 hgsc.bcm.edu hg19 13 33684128 33684128 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . STARD13 NM_178006 exon12 c.T2929C p.W977R CGTCCCACAGGTG . 114.0 5.0 145.0 0.0 . 100 . . Atlas-SNP TRPC4 7223 hgsc.bcm.edu hg19 13 38213437 38213437 + Splice_Site SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 TRPC4_ENST00000379681,NS,carcinoma,0,2 TRPC4 NM_001135956 exon9 c.1885-1G>A . TCGCCTCTGAAAA . 54.0 3.0 39.0 0.0 . 389 . . Atlas-SNP COG6 57511 hgsc.bcm.edu hg19 13 40297514 40297514 + Nonsense_Mutation SNP T T G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COG6 NM_001145079 exon16 c.T1629G p.Y543X CTCTTATGTTTTA . 83.0 5.0 98.0 0.0 . 49 . . Atlas-SNP AKAP11 11215 hgsc.bcm.edu hg19 13 42877272 42877272 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AKAP11 NM_016248 exon8 c.A4390G p.S1464G GTTCACAGCATAA . 64.0 5.0 95.0 0.0 . 146 . . Atlas-SNP PHF11 51131 hgsc.bcm.edu hg19 13 50098318 50098318 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PHF11 NM_001040443 exon8 c.A735G p.P245P AATTCCAGAAAAA . 88.0 4.0 145.0 0.0 . 20 . . Atlas-SNP LECT1 11061 hgsc.bcm.edu hg19 13 53277943 53277943 + Silent SNP C C T rs368102754 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LECT1 NM_007015 exon7 c.G792A p.Q264Q TTCCTGCTGCTGT . 77.0 4.0 74.0 0.0 . 44 . . Atlas-SNP IPO5 3843 hgsc.bcm.edu hg19 13 98658548 98658548 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IPO5 NM_002271 exon17 c.A1716G p.R572R TCTGAGAGGAAAA . 211.0 12.0 113.0 0.0 . 90 . . Atlas-SNP COL4A1 1282 hgsc.bcm.edu hg19 13 110827094 110827094 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COL4A1 NM_001845 exon38 c.A3201G p.G1067G TTGATCTCCCTGC . 94.0 6.0 62.0 0.0 . 372 . . Atlas-SNP OR4Q3 441669 hgsc.bcm.edu hg19 14 20215940 20215940 + Silent SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 OR4Q3,NS,carcinoma,0,1 OR4Q3 NM_172194 exon1 c.C354T p.V118V GACAGTCATGGCC . 145.0 10.0 139.0 0.0 . 117 . . Atlas-SNP KLHL33 123103 hgsc.bcm.edu hg19 14 20897683 20897683 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KLHL33 NM_001109997 exon3 c.A1027G p.N343D CAGGGTTGTAGGT . 73.0 4.0 80.0 0.0 . 37 . . Atlas-SNP PRMT5 10419 hgsc.bcm.edu hg19 14 23393312 23393312 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRMT5 NM_006109 exon12 c.A1280G p.E427G GCTTTCTCTGGAG . 117.0 5.0 110.0 0.0 . 101 . . Atlas-SNP IPO4 79711 hgsc.bcm.edu hg19 14 24653232 24653232 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IPO4 NM_024658 exon18 c.T1841C p.L614P AGTGACAGCAGCA . 100.0 4.0 80.0 0.0 . 74 . . Atlas-SNP TM9SF1 10548 hgsc.bcm.edu hg19 14 24662001 24662001 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TM9SF1 NM_001014842 exon3 c.A820G p.T274A AGGTGGTCTCCTC . 123.0 5.0 137.0 0.0 . 58 . . Atlas-SNP RIPK3 11035 hgsc.bcm.edu hg19 14 24805506 24805506 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RIPK3 NM_006871 exon10 c.G1432A p.G478S CCAAGCCCCATGT . 98.0 37.0 88.0 0.0 . 43 . . Atlas-SNP PRPF39 55015 hgsc.bcm.edu hg19 14 45571779 45571779 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRPF39 NM_017922 exon5 c.A617G p.D206G GTTCTGACAGACT . 90.0 4.0 98.0 0.0 . 46 . . Atlas-SNP SOS2 6655 hgsc.bcm.edu hg19 14 50647366 50647366 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SOS2 NM_006939 exon7 c.A893G p.Q298R ATGTCCTGTGATA . 56.0 4.0 48.0 0.0 . 195 . . Atlas-SNP PYGL 5836 hgsc.bcm.edu hg19 14 51375542 51375542 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PYGL NM_002863 exon18 c.A2309G p.D770G CACCTGTCATGAT . 93.0 5.0 109.0 0.0 . 77 . . Atlas-SNP KTN1 3895 hgsc.bcm.edu hg19 14 56126388 56126388 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KTN1 NM_004986 exon31 c.C2966T p.S989F AGGCATCTTCTTT . 97.0 5.0 59.0 0.0 . 147 . . Atlas-SNP AP5M1 55745 hgsc.bcm.edu hg19 14 57741096 57741096 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_018229 exon2 c.A209G p.E70G TCGTTGAGAGTCG . 114.0 5.0 105.0 0.0 . . . . Atlas-SNP SLC38A6 145389 hgsc.bcm.edu hg19 14 61497161 61497161 + Splice_Site SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC38A6 NM_153811 exon6 c.404-2A>G . TTTTGCAGCTATG . 97.0 5.0 112.0 0.0 . 87 . . Atlas-SNP SIPA1L1 26037 hgsc.bcm.edu hg19 14 72152235 72152235 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SIPA1L1 NM_015556 exon10 c.T3261C p.S1087S GCAGAGTCCCATG . 97.0 5.0 88.0 0.0 . 219 . . Atlas-SNP FAM161B 145483 hgsc.bcm.edu hg19 14 74409383 74409383 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM161B NM_152445 exon4 c.A1150G p.R384G GGGCTCTCATTTG . 70.0 4.0 68.0 0.0 . 67 . . Atlas-SNP IRF2BPL 64207 hgsc.bcm.edu hg19 14 77493060 77493060 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IRF2BPL NM_024496 exon1 c.A1076G p.E359G AGGCTCTCGCTCA . 100.0 5.0 66.0 0.0 . 40 . . Atlas-SNP AHSA1 10598 hgsc.bcm.edu hg19 14 77935521 77935521 + Silent SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 AHSA1,NS,carcinoma,0,1 AHSA1 NM_012111 exon9 c.C946A p.R316R CGGACGCGACAGG . 166.0 0.0 163.0 0.0 . 24 . . Atlas-SNP SEL1L 6400 hgsc.bcm.edu hg19 14 81970628 81970628 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SEL1L NM_001244984 exon5 c.A531G p.R177R CTGCCGTCTCTTA . 142.0 6.0 146.0 0.0 . 67 . . Atlas-SNP GALC 2581 hgsc.bcm.edu hg19 14 88429767 88429767 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GALC NM_000153 exon10 c.T1122C p.T374T GCCATCAGTCAGA . 102.0 6.0 90.0 0.0 . 48 . . Atlas-SNP EML5 161436 hgsc.bcm.edu hg19 14 89172628 89172628 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EML5 NM_183387 exon11 c.A1800G p.K600K AGCATCTTTCAGT . 87.0 4.0 96.0 0.0 . 141 . . Atlas-SNP BTBD7 55727 hgsc.bcm.edu hg19 14 93712578 93712578 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BTBD7 NM_001002860 exon10 c.A2176G p.T726A TCATTGTCAAGAG . 130.0 6.0 113.0 0.0 . 112 . . Atlas-SNP DDX24 57062 hgsc.bcm.edu hg19 14 94519409 94519409 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DDX24 NM_020414 exon8 c.A2243G p.H748R GAGTTGTGCAGGC . 81.0 4.0 106.0 0.0 . 82 . . Atlas-SNP ATG2B 55102 hgsc.bcm.edu hg19 14 96761480 96761480 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATG2B NM_018036 exon36 c.T5243C p.V1748A CAGGTGACATCAG . 89.0 5.0 110.0 0.0 . 169 . . Atlas-SNP CCNK 8812 hgsc.bcm.edu hg19 14 99976694 99976694 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCNK NM_001099402 exon11 c.T1318C p.S440P TACATGTCTGGAG . 139.0 6.0 130.0 0.0 . 32 . . Atlas-SNP DYNC1H1 1778 hgsc.bcm.edu hg19 14 102431079 102431079 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DYNC1H1 NM_001376 exon1 c.A51G p.E17E ATTGGAAGTGTCG . 43.0 4.0 25.0 0.0 . 395 . . Atlas-SNP AMN 81693 hgsc.bcm.edu hg19 14 103395267 103395267 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AMN NM_030943 exon5 c.T468C p.P156P CGGCCCTGGCGCT . 53.0 4.0 32.0 0.0 . 13 . . Atlas-SNP CDC42BPB 9578 hgsc.bcm.edu hg19 14 103414077 103414077 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDC42BPB NM_006035 exon27 c.A3512G p.D1171G GGAATATCTCGGC . 96.0 4.0 65.0 0.0 . 123 . . Atlas-SNP MTA1 9112 hgsc.bcm.edu hg19 14 105916421 105916421 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 MTA1,NS,carcinoma,0,1 MTA1 NM_004689 exon5 c.C268T p.P90S GAGAACCCGGAAA . 157.0 0.0 179.0 0.0 . 61 . . Atlas-SNP APBA2 321 hgsc.bcm.edu hg19 15 29397672 29397672 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . APBA2 NM_005503 exon10 c.A1615G p.S539G GACTTGAGCCAGA . 123.0 5.0 86.0 0.0 . 132 . . Atlas-SNP C15orf55 256646 hgsc.bcm.edu hg19 15 34649310 34649310 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 C15orf55_ENST00000333756,lymph_node,lymphoid_neoplasm,0,1 C15orf55 NM_175741 exon7 c.A3017G p.K1006R AGAAAAAGAAAAA . 56.0 3.0 55.0 0.0 . 110 . . Atlas-SNP ATPBD4 89978 hgsc.bcm.edu hg19 15 35742950 35742950 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATPBD4 NM_080650 exon5 c.A441G p.E147E CAAATCTTCCTGG . 96.0 4.0 112.0 0.0 . 30 . . Atlas-SNP NDUFAF1 51103 hgsc.bcm.edu hg19 15 41688824 41688824 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NDUFAF1 NM_016013 exon2 c.G434T p.G145V CTGCCTCCAATCG . 270.0 94.0 250.0 0.0 . 39 . . Atlas-SNP ITPKA 3706 hgsc.bcm.edu hg19 15 41794627 41794627 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ITPKA NM_002220 exon5 c.T1036C p.F346L ACCGACTTCAAGA . 96.0 5.0 79.0 0.0 . 19 . . Atlas-SNP LTK 4058 hgsc.bcm.edu hg19 15 41797008 41797008 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LTK NM_002344 exon17 c.T2083C p.F695L CCAGGAAGGCCTC . 99.0 4.0 76.0 0.0 . 117 . . Atlas-SNP UBR1 197131 hgsc.bcm.edu hg19 15 43314950 43314950 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UBR1 NM_174916 exon26 c.A2789G p.Q930R GCTTTTTGAAGCT . 65.0 4.0 54.0 0.0 . 124 . . Atlas-SNP MYO5C 55930 hgsc.bcm.edu hg19 15 52571842 52571842 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYO5C NM_018728 exon3 c.T168C p.S56S AGGCAGAGATTCT . 78.0 6.0 61.0 0.0 . 162 . . Atlas-SNP MYO5A 4644 hgsc.bcm.edu hg19 15 52645812 52645812 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYO5A NM_000259 exon27 c.A3611G p.E1204G AGTGACTCATATT . 151.0 7.0 139.0 0.0 . 145 . . Atlas-SNP GCOM1 145781 hgsc.bcm.edu hg19 15 57967220 57967220 + Missense_Mutation SNP G G C rs146505887 bycluster;byfrequency;alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 GCOM1_ENST00000574161,NS,carcinoma,0,2 GCOM1 NM_001018090 exon12 c.G1258C p.E420Q AAGACTGAAGTGG . 104.0 0.0 104.0 0.0 . 66 . G|0.999;A|0.001 Atlas-SNP GCNT3 9245 hgsc.bcm.edu hg19 15 59910958 59910958 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GCNT3 NM_004751 exon3 c.A521G p.E174G TCAAAGAGGCGGT . 93.0 4.0 93.0 0.0 . 42 . . Atlas-SNP TLN2 83660 hgsc.bcm.edu hg19 15 62948266 62948266 + Missense_Mutation SNP T T G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TLN2 NM_015059 exon5 c.T641G p.L214R TGCAGCTGAACTT . 146.0 6.0 133.0 0.0 . 253 . . Atlas-SNP IGDCC4 57722 hgsc.bcm.edu hg19 15 65689174 65689174 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IGDCC4 NM_020962 exon6 c.T995C p.L332P TCACCCAGCACAC . 82.0 4.0 36.0 0.0 . 95 . . Atlas-SNP VWA9 81556 hgsc.bcm.edu hg19 15 65871932 65871932 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VWA9 NM_001207058 exon12 c.T1317C p.A439A CATGTCAGCCACC . 110.0 5.0 98.0 0.0 . 15 . . Atlas-SNP NOX5 79400 hgsc.bcm.edu hg19 15 69331259 69331259 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NOX5 NM_024505 exon9 c.T1434C p.Y478Y CTTGTATCTGAAC . 165.0 7.0 148.0 0.0 . 60 . . Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72193622 72193622 + Silent SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYO9A NM_006901 exon23 c.C3060T p.L1020L TCTGCGGAGCACC . 141.0 57.0 132.0 0.0 . 203 . . Atlas-SNP STRA6 64220 hgsc.bcm.edu hg19 15 74473791 74473791 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . STRA6 NM_001199042 exon17 c.T1646C p.L549P GCATAGAGCACTC . 100.0 4.0 67.0 0.0 . 66 . . Atlas-SNP AKAP13 11214 hgsc.bcm.edu hg19 15 86124122 86124122 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AKAP13 NM_007200 exon7 c.T2823C p.A941A AAATGCTCTCTCT . 89.0 4.0 100.0 0.0 . 394 . . Atlas-SNP KLHL25 64410 hgsc.bcm.edu hg19 15 86312123 86312123 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KLHL25 NM_022480 exon2 c.T919C p.C307R TGTCACACATGAA . 123.0 5.0 140.0 0.0 . 58 . . Atlas-SNP CRTC3 64784 hgsc.bcm.edu hg19 15 91185296 91185296 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CRTC3 NM_022769 exon15 c.T1784C p.L595P ACGGACTCAACAT . 162.0 7.0 173.0 0.0 . 47 . . Atlas-SNP ZNF598 90850 hgsc.bcm.edu hg19 16 2053113 2053113 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF598 NM_178167 exon5 c.T344C p.L115P TGCTGCAGCAGCT . 59.0 4.0 52.0 0.0 . 55 . . Atlas-SNP SRRM2 23524 hgsc.bcm.edu hg19 16 2812846 2812846 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SRRM2 NM_016333 exon11 c.T2317C p.L773L TCTCGCTTGTCTT . 63.0 4.0 67.0 0.0 . 263 . . Atlas-SNP CCDC64B 146439 hgsc.bcm.edu hg19 16 3079412 3079412 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCDC64B NM_001103175 exon6 c.A976G p.T326A TTCGGGTCTTTGG . 57.0 4.0 32.0 0.0 . 19 . . Atlas-SNP ADCY9 115 hgsc.bcm.edu hg19 16 4016885 4016885 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ADCY9,NS,carcinoma,0,1 ADCY9 NM_001116 exon11 c.G2953A p.V985I AGAAGACGAGAAC . 69.0 3.0 60.0 0.0 . 151 . . Atlas-SNP TEKT5 146279 hgsc.bcm.edu hg19 16 10788409 10788409 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TEKT5 NM_144674 exon1 c.T322C p.S108P GCCGGGAGGCCTC . 79.0 5.0 53.0 0.0 . 66 . . Atlas-SNP CLEC16A 23274 hgsc.bcm.edu hg19 16 11272336 11272336 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CLEC16A NM_015226 exon23 c.T2951C p.V984A GCCTCGTCCCTGC . 94.0 4.0 67.0 0.0 . 101 . . Atlas-SNP MKL2 57496 hgsc.bcm.edu hg19 16 14346343 14346343 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MKL2 NM_014048 exon15 c.A2537G p.Q846R GCACACAGGCCCC . 82.0 4.0 85.0 0.0 . 103 . . Atlas-SNP ACSM1 116285 hgsc.bcm.edu hg19 16 20682956 20682956 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACSM1 NM_052956 exon4 c.A649G p.T217A CCAAGGTCTTTGA . 114.0 5.0 81.0 0.0 . 118 . . Atlas-SNP ACSM1 116285 hgsc.bcm.edu hg19 16 20696513 20696513 + Splice_Site SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACSM1 NM_052956 exon3 c.403+2T>C . TCACTGACCTGTT . 96.0 4.0 100.0 0.0 . 118 . . Atlas-SNP DNAH3 55567 hgsc.bcm.edu hg19 16 20994094 20994094 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 DNAH3_ENST00000261383,caecum,carcinoma,0,2 DNAH3 NM_017539 exon49 c.T7808C p.V2603A TTAGCCACCAACT . 64.0 3.0 46.0 1.0 . 1142 . . Atlas-SNP COG7 91949 hgsc.bcm.edu hg19 16 23404640 23404640 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COG7 NM_153603 exon15 c.T1916C p.L639P AGATTCAGGGGGA . 66.0 4.0 51.0 0.0 . 62 . . Atlas-SNP GGA2 23062 hgsc.bcm.edu hg19 16 23481435 23481435 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GGA2 NM_015044 exon15 c.T1502C p.L501P AAGTGGAGCAGAA . 71.0 5.0 87.0 0.0 . 49 . . Atlas-SNP ARHGAP17 55114 hgsc.bcm.edu hg19 16 24950880 24950880 + Missense_Mutation SNP C C A rs78457529 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARHGAP17 NM_001006634 exon17 c.G1529T p.R510L CCACCCCGCCGGT . 81.0 4.0 63.0 0.0 . 138 . C|0.992;T|0.008 Atlas-SNP SETD1A 9739 hgsc.bcm.edu hg19 16 30976976 30976976 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SETD1A NM_014712 exon8 c.G1774A p.G592S CGGGGTGGCTCAC . 83.0 34.0 55.0 0.0 . 143 . . Atlas-SNP ZNF646 9726 hgsc.bcm.edu hg19 16 31088375 31088375 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ZNF646,NS,carcinoma,0,1 ZNF646 NM_014699 exon2 c.T730C p.C244R AGTCAGTGTGGCA . 99.0 4.0 76.0 1.0 . 133 . . Atlas-SNP PHKB 5257 hgsc.bcm.edu hg19 16 47622844 47622844 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PHKB NM_000293 exon10 c.T899C p.I300T CCTGCATCAGTTA . 79.0 4.0 93.0 0.0 . 298 . . Atlas-SNP ZNF423 23090 hgsc.bcm.edu hg19 16 49672029 49672029 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF423 NM_015069 exon4 c.A1034G p.H345R TGCCGGTGGCTGT . 89.0 6.0 72.0 0.0 . 463 . . Atlas-SNP SALL1 6299 hgsc.bcm.edu hg19 16 51173561 51173561 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SALL1 NM_002968 exon2 c.C2572T p.L858F TCTCGAGGGGCAA . 183.0 8.0 155.0 0.0 . 301 . . Atlas-SNP NUP93 9688 hgsc.bcm.edu hg19 16 56867148 56867148 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NUP93 NM_014669 exon13 c.A1367G p.N456S CGGTGAACCAGCA . 150.0 6.0 127.0 0.0 . 75 . . Atlas-SNP RSPRY1 89970 hgsc.bcm.edu hg19 16 57254758 57254758 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RSPRY1 NM_133368 exon9 c.A1016G p.E339G GCTTAGAGGTAGG . 125.0 5.0 128.0 0.0 . 49 . . Atlas-SNP CNOT1 23019 hgsc.bcm.edu hg19 16 58562491 58562491 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CNOT1 NM_016284 exon44 c.A6341G p.H2114R CCATAATGGTAAT . 71.0 4.0 61.0 0.0 . 359 . . Atlas-SNP CNOT1 23019 hgsc.bcm.edu hg19 16 58608980 58608980 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CNOT1 NM_206999 exon15 c.T1758C p.A586A AAGTGCAGCAAGG . 90.0 4.0 82.0 0.0 . 359 . . Atlas-SNP CBFB 865 hgsc.bcm.edu hg19 16 67116231 67116231 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CBFB NM_001755 exon5 c.T515C p.L172P AGCTGCTGGCAGT . 96.0 4.0 86.0 0.0 . 52 . . Atlas-SNP HSF4 3299 hgsc.bcm.edu hg19 16 67203201 67203201 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HSF4 NM_001040667 exon14 c.A1274G p.E425G TTCCAGAGCGGGG . 72.0 4.0 59.0 0.0 . 33 . . Atlas-SNP KCTD19 146212 hgsc.bcm.edu hg19 16 67329298 67329298 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KCTD19 NM_001100915 exon9 c.T1259C p.L420P GACAGCAGTTCTG . 82.0 4.0 67.0 0.0 . 82 . . Atlas-SNP NFATC3 4775 hgsc.bcm.edu hg19 16 68156826 68156826 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NFATC3 NM_173163 exon2 c.A1040G p.Q347R AAGATCAAGCTGC . 75.0 4.0 71.0 0.0 . 190 . . Atlas-SNP COG4 25839 hgsc.bcm.edu hg19 16 70548316 70548316 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COG4 NM_015386 exon4 c.G466A p.E156K CCTGCTCATAATC . 107.0 24.0 101.0 0.0 . 64 . . Atlas-SNP BCAR1 9564 hgsc.bcm.edu hg19 16 75269535 75269535 + Missense_Mutation SNP G G T rs376153187 alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BCAR1 NM_001170714 exon6 c.C1400A p.P467Q TCTGCCGGGGCTT . 153.0 10.0 134.0 0.0 . 184 . . Atlas-SNP ADAMTS18 170692 hgsc.bcm.edu hg19 16 77327037 77327037 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ADAMTS18 NM_199355 exon20 c.G3125T p.G1042V ACACAGCCCTCCT . 80.0 23.0 62.0 0.0 . 270 . . Atlas-SNP KIAA0513 9764 hgsc.bcm.edu hg19 16 85112029 85112029 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIAA0513 NM_014732 exon7 c.A791G p.E264G AAGACGAGAACAA . 121.0 5.0 95.0 0.0 . 43 . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88498350 88498350 + Missense_Mutation SNP C C T rs375045076 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ZNF469,NS,carcinoma,0,1 ZNF469 NM_001127464 exon2 c.C4388T p.T1463M AGAAGACGGTGCC . 60.0 4.0 50.0 0.0 . 121 . . Atlas-SNP ZNF778 197320 hgsc.bcm.edu hg19 16 89294754 89294754 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF778 NM_001201407 exon7 c.T2058C p.S686S CTCCTCTCACCTG . 114.0 5.0 115.0 0.0 . 67 . . Atlas-SNP FANCA 2175 hgsc.bcm.edu hg19 16 89839740 89839740 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FANCA NM_000135 exon22 c.A1953G p.G651G GAGCTGTCCCAGG . 91.0 4.0 101.0 0.0 . 99 . . Atlas-SNP FANCA 2175 hgsc.bcm.edu hg19 16 89857899 89857899 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FANCA NM_000135 exon14 c.T1271C p.L424P CTGTCCAGCTGGC . 82.0 4.0 62.0 0.0 . 99 . . Atlas-SNP ACADVL 37 hgsc.bcm.edu hg19 17 7123922 7123922 + Splice_Site SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACADVL NM_001270447 exon5 c.274-1G>A . TGCCCAGGAATCT . 65.0 4.0 93.0 0.0 . 43 . . Atlas-SNP NEURL4 84461 hgsc.bcm.edu hg19 17 7224736 7224736 + Missense_Mutation SNP T T C rs117553236 bycluster;by1000genomes;alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NEURL4 NM_032442 exon19 c.A3142G p.M1048V TGTGCATCGTGTC . 82.0 6.0 106.0 0.0 . 192 . T|0.996;G|0.004 Atlas-SNP POLR2A 5430 hgsc.bcm.edu hg19 17 7416095 7416095 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . POLR2A NM_000937 exon28 c.A4609G p.S1537G ATAGGGAGTGGAA . 48.0 4.0 57.0 0.0 . 157 . . Atlas-SNP SHBG 6462 hgsc.bcm.edu hg19 17 7536255 7536255 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SHBG NM_001040 exon7 c.T1038C p.R346R AGGGCGTCTCTTC . 43.0 4.0 63.0 0.0 . 21 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578457 7578457 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 TP53_ENST00000545858,NS,adenocarcinoma,0,2 TP53 NM_000546 exon5 c.G473A p.R158H ATGGCGCGGACGC . 90.0 55.0 153.0 0.0 . 33396 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7674122 7674122 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DNAH2 NM_020877 exon26 c.T4233C p.S1411S TCTGTCTACCATG . 99.0 4.0 124.0 0.0 . 498 . . Atlas-SNP CHD3 1107 hgsc.bcm.edu hg19 17 7802659 7802659 + Splice_Site SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CHD3 NM_001005271 exon15 c.2521-2A>G . ACTCCCAGGGCCA . 86.0 4.0 120.0 0.0 . 169 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11572530 11572530 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DNAH9 NM_001372 exon16 c.T2881C p.S961P ATACCATCTCTGG . 105.0 5.0 149.0 0.0 . 695 . . Atlas-SNP RAI1 10743 hgsc.bcm.edu hg19 17 17700882 17700882 + Silent SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RAI1 NM_030665 exon3 c.C4620A p.L1540L GCGCCTCACTCGG . 256.0 89.0 227.0 0.0 . 121 . . Atlas-SNP SLC47A1 55244 hgsc.bcm.edu hg19 17 19451395 19451395 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC47A1 NM_018242 exon4 c.T404C p.L135P TCTTTCTCAACAC . 95.0 4.0 77.0 0.0 . 55 . . Atlas-SNP SLC47A2 146802 hgsc.bcm.edu hg19 17 19583316 19583316 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC47A2 NM_152908 exon16 c.G1537T p.A513S TCTCTGCTCTCTG . 86.0 28.0 64.0 0.0 . 61 . . Atlas-SNP FOXN1 8456 hgsc.bcm.edu hg19 17 26857795 26857795 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FOXN1 NM_003593 exon5 c.A859G p.S287G AAGAACAGTAAAA . 158.0 9.0 143.0 0.0 . 51 . . Atlas-SNP SSH2 85464 hgsc.bcm.edu hg19 17 27959313 27959313 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SSH2 NM_033389 exon15 c.T2818C p.S940P CCTCAGACCCACT . 98.0 4.0 63.0 0.0 . 107 . . Atlas-SNP CPD 1362 hgsc.bcm.edu hg19 17 28791765 28791765 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CPD NM_001304 exon21 c.T4076C p.L1359P AGTCCCTCCTAAG . 97.0 6.0 80.0 0.0 . 89 . . Atlas-SNP NLE1 54475 hgsc.bcm.edu hg19 17 33460449 33460449 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NLE1 NM_018096 exon11 c.T1283C p.L428P ACCAGGAGCCGAC . 102.0 6.0 97.0 0.0 . 42 . . Atlas-SNP THRA 7067 hgsc.bcm.edu hg19 17 38230771 38230771 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . THRA NM_001190918 exon2 c.T30C p.C10C GGAGTGTGGGTCA . 117.0 6.0 83.0 0.0 . 88 . . Atlas-SNP WIPF2 147179 hgsc.bcm.edu hg19 17 38430226 38430226 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WIPF2 NM_133264 exon6 c.T1155C p.S385S AGATTCTATCACC . 68.0 24.0 52.0 0.0 . 55 . . Atlas-SNP PTGES3L-AARSD1 100885850 hgsc.bcm.edu hg19 17 41113229 41113229 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PTGES3L-AARSD1 NM_001136042 exon8 c.A833G p.D278G ATGTGGTCAAACC . 156.0 8.0 114.0 0.0 . 15 . . Atlas-SNP DHX8 1659 hgsc.bcm.edu hg19 17 41582144 41582144 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DHX8 NM_004941 exon12 c.A1679G p.E560G TCCTTGAGCAGAG . 116.0 5.0 97.0 0.0 . 98 . . Atlas-SNP ATXN7L3 56970 hgsc.bcm.edu hg19 17 42273429 42273429 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATXN7L3 NM_020218 exon6 c.A517G p.R173G TGGATCTTCGAGG . 76.0 4.0 95.0 0.0 . 31 . . Atlas-SNP OSBPL7 114881 hgsc.bcm.edu hg19 17 45888158 45888158 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OSBPL7 NM_145798 exon17 c.A1781G p.E594G AAGTTCTCAGACT . 87.0 5.0 63.0 0.0 . 65 . . Atlas-SNP HOXB2 3212 hgsc.bcm.edu hg19 17 46622272 46622272 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HOXB2 NM_002145 exon1 c.T2C p.M1T AAATTCATGGCTT . 61.0 4.0 37.0 0.0 . 23 . . Atlas-SNP RNF43 54894 hgsc.bcm.edu hg19 17 56448298 56448298 + Missense_Mutation SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,6 RNF43 NM_017763 exon3 c.C349A p.R117S AGGGGCGGGGGGC . 129.0 0.0 82.0 0.0 . 157 . . Atlas-SNP VMP1 81671 hgsc.bcm.edu hg19 17 57808841 57808841 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VMP1 NM_030938 exon2 c.C34T p.R12C CAGAGACGTGTAG . 120.0 31.0 84.0 0.0 . 49 . . Atlas-SNP ACE 1636 hgsc.bcm.edu hg19 17 61568576 61568576 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACE NM_000789 exon19 c.A2746G p.T916A GGCTGGACGCCCA . 82.0 4.0 62.0 0.0 . 187 . . Atlas-SNP SCN4A 6329 hgsc.bcm.edu hg19 17 62048557 62048557 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SCN4A NM_000334 exon5 c.T668C p.V223A CGCAGCACCCGGA . 71.0 5.0 42.0 0.0 . 205 . . Atlas-SNP GNA13 10672 hgsc.bcm.edu hg19 17 63014373 63014373 + Missense_Mutation SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GNA13 NM_006572 exon3 c.C559T p.P187S TTACTGGTTCTCC . 236.0 57.0 200.0 0.0 . 69 . . Atlas-SNP PSMD12 5718 hgsc.bcm.edu hg19 17 65346373 65346373 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PSMD12 NM_002816 exon4 c.A377G p.D126G AGAGTATCAATTA . 131.0 6.0 109.0 0.0 . 32 . . Atlas-SNP FDXR 2232 hgsc.bcm.edu hg19 17 72860316 72860316 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FDXR NM_001258012 exon9 c.A1085G p.D362G CGCCCATCTGGTG . 93.0 7.0 54.0 0.0 . 68 . . Atlas-SNP TNRC6C 57690 hgsc.bcm.edu hg19 17 76075517 76075517 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TNRC6C NM_018996 exon11 c.A3252G p.A1084A TGGAGCAGCACAA . 149.0 6.0 88.0 0.0 . 173 . . Atlas-SNP USP36 57602 hgsc.bcm.edu hg19 17 76799861 76799861 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,2 USP36 NM_025090 exon16 c.C2416G p.Q806E GGCTCTGGGGGGG . 80.0 0.0 52.0 0.0 . 243 . . Atlas-SNP CBX2 84733 hgsc.bcm.edu hg19 17 77755868 77755868 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CBX2 NM_032647 exon4 c.T556C p.S186P GCAGGGTCAAACT . 131.0 6.0 72.0 0.0 . 50 . . Atlas-SNP CBX4 8535 hgsc.bcm.edu hg19 17 77812826 77812826 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CBX4 NM_003655 exon2 c.A97G p.R33G AGCCTCTCCATTT . 91.0 5.0 54.0 0.0 . 40 . . Atlas-SNP AATK 9625 hgsc.bcm.edu hg19 17 79094085 79094085 + Silent SNP C C G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AATK NM_001080395 exon11 c.G3651C p.L1217L CTCGGACAGCAGG . 173.0 39.0 105.0 0.0 . 102 . . Atlas-SNP DUS1L 64118 hgsc.bcm.edu hg19 17 80020818 80020818 + Silent SNP A A G rs372985546 alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DUS1L NM_022156 exon5 c.T429C p.P143P CGTGACAGGAACA . 55.0 4.0 47.0 0.0 . 25 . . Atlas-SNP SMCHD1 23347 hgsc.bcm.edu hg19 18 2750117 2750117 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SMCHD1 NM_015295 exon31 c.C4004A p.P1335H TTGCCCCTAGGTA . 94.0 23.0 106.0 0.0 . 88 . . Atlas-SNP MYOM1 8736 hgsc.bcm.edu hg19 18 3151804 3151804 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYOM1 NM_003803 exon12 c.T1731C p.G577G GGAACGACCTTCG . 98.0 4.0 91.0 0.0 . 192 . . Atlas-SNP ZBTB14 7541 hgsc.bcm.edu hg19 18 5291325 5291325 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_001243702 exon4 c.G882T p.K294N CTCATGCTTCCTC . 122.0 43.0 115.0 0.0 . . . . Atlas-SNP CEP76 79959 hgsc.bcm.edu hg19 18 12673464 12673464 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CEP76 NM_024899 exon12 c.A1880G p.D627G ACTTGGTCTCCAC . 150.0 6.0 126.0 0.0 . 45 . . Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21494402 21494402 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LAMA3 NM_198129 exon57 c.T7358C p.V2453A TGGCAGTTGTGGA . 65.0 4.0 63.0 0.0 . 397 . . Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21494698 21494698 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LAMA3 NM_198129 exon58 c.A7518G p.G2506G CAAAGGAGCCACA . 113.0 5.0 109.0 0.0 . 397 . . Atlas-SNP DSG2 1829 hgsc.bcm.edu hg19 18 29125991 29125991 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DSG2 NM_001943 exon15 c.C2642T p.T881I AGAATACCTACTC . 79.0 4.0 65.0 0.0 . 115 . . Atlas-SNP ASXL3 80816 hgsc.bcm.edu hg19 18 31320093 31320093 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ASXL3 NM_030632 exon11 c.T2725C p.S909P TATATCTCATCAG . 100.0 4.0 108.0 0.0 . 405 . . Atlas-SNP EPG5 57724 hgsc.bcm.edu hg19 18 43532416 43532416 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EPG5 NM_020964 exon3 c.T1202C p.L401P CTACTGAGCAATG . 100.0 4.0 91.0 0.0 . 199 . . Atlas-SNP DCC 1630 hgsc.bcm.edu hg19 18 50278698 50278698 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DCC NM_005215 exon2 c.A366G p.G122G TTTAGGAGATTCT . 163.0 7.0 146.0 0.0 . 360 . . Atlas-SNP POLI 11201 hgsc.bcm.edu hg19 18 51807238 51807238 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . POLI NM_007195 exon5 c.T761C p.L254P AACATCTTATTCA . 76.0 4.0 74.0 0.0 . 132 . . Atlas-SNP WDR7 23335 hgsc.bcm.edu hg19 18 54547190 54547190 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 WDR7,colon,carcinoma,0,1 WDR7 NM_015285 exon21 c.T3320C p.V1107A CAAGTGTCCCACA . 131.0 6.0 92.0 0.0 . 166 . . Atlas-SNP ST8SIA3 51046 hgsc.bcm.edu hg19 18 55024466 55024466 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ST8SIA3 NM_015879 exon3 c.A625G p.T209A CTTACCACCTTCA . 92.0 4.0 69.0 0.0 . 73 . . Atlas-SNP ST8SIA3 51046 hgsc.bcm.edu hg19 18 55027237 55027237 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ST8SIA3 NM_015879 exon4 c.A872G p.N291S GGAAAAACAAACA . 94.0 4.0 101.0 0.0 . 73 . . Atlas-SNP ARID3A 1820 hgsc.bcm.edu hg19 19 932477 932477 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARID3A NM_005224 exon3 c.A428G p.E143G AGGAGGAGGAGGA . 71.0 4.0 48.0 0.0 . 35 . . Atlas-SNP MKNK2 2872 hgsc.bcm.edu hg19 19 2041918 2041918 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MKNK2 NM_017572 exon11 c.T866C p.L289P CCGCTGAGTAGGA . 54.0 4.0 71.0 0.0 . 56 . . Atlas-SNP AP3D1 8943 hgsc.bcm.edu hg19 19 2123875 2123875 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AP3D1 NM_001261826 exon10 c.T860C p.L287P GAGATGAGCACTG . 147.0 8.0 136.0 0.0 . 81 . . Atlas-SNP JSRP1 126306 hgsc.bcm.edu hg19 19 2254202 2254202 + Silent SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . JSRP1 NM_144616 exon4 c.G246A p.R82R TTTCAGCCTCTCC . 89.0 4.0 72.0 0.0 . 18 . . Atlas-SNP ZNF556 80032 hgsc.bcm.edu hg19 19 2877368 2877368 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF556 NM_024967 exon4 c.A412G p.K138E CTGCGCAAGAATT . 95.0 4.0 119.0 0.0 . 73 . . Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11150224 11150224 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SMARCA4 NM_001128849 exon30 c.T4261C p.S1421P CGTGCGTCAAAGG . 112.0 5.0 121.0 0.0 . 502 . . Atlas-SNP ELAVL3 1995 hgsc.bcm.edu hg19 19 11565448 11565448 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ELAVL3 NM_001420 exon7 c.A997G p.T333A AGTTGGTCATGGT . 127.0 7.0 108.0 0.0 . 58 . . Atlas-SNP NOTCH3 4854 hgsc.bcm.edu hg19 19 15292438 15292438 + Missense_Mutation SNP G G C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 NOTCH3,NS,carcinoma,0,1 NOTCH3 NM_000435 exon17 c.C2741G p.P914R TAGCCTGGCGGGC . 296.0 0.0 281.0 0.0 . 340 . . Atlas-SNP CYP4F12 66002 hgsc.bcm.edu hg19 19 15807241 15807241 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CYP4F12 NM_023944 exon12 c.T1316C p.V439A TGCAGGTCTACGA . 127.0 6.0 95.0 0.0 . 89 . . Atlas-SNP UNC13A 23025 hgsc.bcm.edu hg19 19 17758258 17758258 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UNC13A NM_001080421 exon16 c.A1860G p.T620T GTTCTGTGTCCGG . 109.0 5.0 117.0 0.0 . 299 . . Atlas-SNP PDE4C 5143 hgsc.bcm.edu hg19 19 18322644 18322644 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PDE4C NM_000923 exon15 c.A1716G p.G572G GCGGTCTCCCTGC . 135.0 7.0 120.0 0.0 . 80 . . Atlas-SNP PBX4 80714 hgsc.bcm.edu hg19 19 19681414 19681414 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PBX4 NM_025245 exon3 c.A422G p.E141G TCTAGCTCAGAGT . 123.0 6.0 90.0 0.0 . 34 . . Atlas-SNP ZNF626 199777 hgsc.bcm.edu hg19 19 20807353 20807353 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ZNF626_ENST00000392298,bladder,carcinoma,0,1 ZNF626 NM_001076675 exon4 c.A1330G p.R444G TTCTCCTATGTGT . 39.0 4.0 24.0 0.0 . 121 . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 30935844 30935844 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF536 NM_014717 exon2 c.C1375T p.P459S GAGCTGCCCATGA . 73.0 4.0 82.0 0.0 . 424 . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 31039960 31039960 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ZNF536,colon,carcinoma,0,1 ZNF536 NM_014717 exon4 c.T3434C p.V1145A AGGATGTCCCCAT . 113.0 6.0 97.0 0.0 . 424 . . Atlas-SNP ATP4A 495 hgsc.bcm.edu hg19 19 36048637 36048637 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATP4A NM_000704 exon11 c.A1613G p.E538G GGCAGCTCCTGGC . 155.0 9.0 127.0 0.0 . 123 . . Atlas-SNP NPHS1 4868 hgsc.bcm.edu hg19 19 36333298 36333298 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NPHS1 NM_004646 exon18 c.T2489C p.L830P AGACGGAGCAGCC . 71.0 5.0 37.0 0.0 . 165 . . Atlas-SNP GRIK5 2901 hgsc.bcm.edu hg19 19 42510910 42510910 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GRIK5 NM_002088 exon15 c.T1924C p.F642L TGAGGAAGGCGGC . 94.0 4.0 84.0 0.0 . 220 . . Atlas-SNP ERCC2 2068 hgsc.bcm.edu hg19 19 45867515 45867515 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ERCC2 NM_000400 exon9 c.A793G p.T265A GCAGGGTCTCCAG . 114.0 6.0 83.0 0.0 . 78 . . Atlas-SNP ARHGAP35 2909 hgsc.bcm.edu hg19 19 47422735 47422735 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_004491 exon1 c.A803G p.Q268R AGAGTCAGCAGAT . 99.0 5.0 73.0 0.0 . . . . Atlas-SNP SLC6A16 28968 hgsc.bcm.edu hg19 19 49813309 49813309 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC6A16 NM_014037 exon4 c.T688C p.S230P CACTAGAGTTCAT . 147.0 6.0 160.0 0.0 . 62 . . Atlas-SNP SIGLEC12 89858 hgsc.bcm.edu hg19 19 52002448 52002448 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SIGLEC12 NM_053003 exon4 c.A1111G p.T371A AGACAGTCATGGT . 141.0 6.0 137.0 0.0 . 243 . . Atlas-SNP ZNF841 284371 hgsc.bcm.edu hg19 19 52569542 52569542 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF841 NM_001136499 exon7 c.T1593C p.H531H TCTCTGATGTACA . 36.0 4.0 52.0 0.0 . 183 . . Atlas-SNP ZNF347 84671 hgsc.bcm.edu hg19 19 53645764 53645764 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF347 NM_001172675 exon5 c.A320G p.K107R TTACTCTTCCCTT . 119.0 5.0 118.0 0.0 . 87 . . Atlas-SNP ZNF845 91664 hgsc.bcm.edu hg19 19 53855284 53855284 + Silent SNP G G A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ZNF845,NS,carcinoma,0,1 ZNF845 NM_138374 exon4 c.G1356A p.S452S CAAATCGAACCTT . 55.0 3.0 45.0 1.0 . 101 . . Atlas-SNP ZNF761 388561 hgsc.bcm.edu hg19 19 53959189 53959189 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF761 NM_001008401 exon7 c.T1428C p.R476R TTTCCGTTTCAAA . 39.0 10.0 41.0 0.0 . 104 . . Atlas-SNP DPRX 503834 hgsc.bcm.edu hg19 19 54140025 54140025 + Missense_Mutation SNP T T A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DPRX NM_001012728 exon3 c.T359A p.V120E GCCTGGTGTACAC . 160.0 52.0 158.0 0.0 . 34 . . Atlas-SNP NLRP7 199713 hgsc.bcm.edu hg19 19 55445101 55445101 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NLRP7 NM_001127255 exon8 c.A2478G p.E826E ACAGTTTTCCAAC . 97.0 4.0 78.0 0.0 . 411 . . Atlas-SNP SSC5D 284297 hgsc.bcm.edu hg19 19 56028719 56028719 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SSC5D NM_001144950 exon14 c.T3076C p.S1026P TCTGACTCCAGTC . 99.0 5.0 94.0 0.0 . 65 . . Atlas-SNP PEG3 5178 hgsc.bcm.edu hg19 19 57326604 57326604 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PEG3 NM_001146184 exon9 c.A3206G p.D1069G TCCCCATCAGTAT . 115.0 5.0 84.0 0.0 . 414 . . Atlas-SNP CSNK2A1 1457 hgsc.bcm.edu hg19 20 469379 469379 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CSNK2A1 NM_001895 exon10 c.A767G p.D256G ATATAGTCATATA . 111.0 6.0 73.0 0.0 . 36 . . Atlas-SNP PAK7 57144 hgsc.bcm.edu hg19 20 9538333 9538333 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PAK7 NM_177990 exon7 c.T1665C p.A555A GGAGAGAGCTCTC . 96.0 4.0 79.0 0.0 . 194 . . Atlas-SNP MGME1 92667 hgsc.bcm.edu hg19 20 17950850 17950850 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_052865 exon2 c.T348C p.D116D AAGTGATCCTTCA . 119.0 5.0 131.0 0.0 . . . . Atlas-SNP PXMP4 11264 hgsc.bcm.edu hg19 20 32302502 32302502 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PXMP4 NM_183397 exon2 c.A154G p.T52A GAAAGGTCATGAC . 150.0 6.0 144.0 0.0 . 20 . . Atlas-SNP EIF2S2 8894 hgsc.bcm.edu hg19 20 32686360 32686360 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EIF2S2 NM_003908 exon4 c.A377G p.K126R TTTTTCTTCTTTT . 72.0 4.0 81.0 0.0 . 32 . . Atlas-SNP CEP250 11190 hgsc.bcm.edu hg19 20 34092346 34092346 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CEP250 NM_007186 exon30 c.A6149G p.E2050G ATGAAGAGCTGAG . 79.0 4.0 71.0 0.0 . 141 . . Atlas-SNP TGIF2 60436 hgsc.bcm.edu hg19 20 35219773 35219773 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TGIF2 NM_021809 exon3 c.A653G p.Q218R AGCAGCAGGACCC . 117.0 6.0 112.0 0.0 . 26 . . Atlas-SNP CHD6 84181 hgsc.bcm.edu hg19 20 40084597 40084597 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CHD6 NM_032221 exon19 c.A2852G p.E951G TCCACCTCCATTT . 119.0 5.0 137.0 0.0 . 312 . . Atlas-SNP PREX1 57580 hgsc.bcm.edu hg19 20 47342873 47342873 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PREX1 NM_020820 exon5 c.T575C p.L192P GACAACAGGTAGC . 89.0 5.0 126.0 0.0 . 441 . . Atlas-SNP NPEPL1 79716 hgsc.bcm.edu hg19 20 57269500 57269500 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NPEPL1 NM_024663 exon3 c.T359C p.V120A CGGAGGTCTTTGC . 107.0 5.0 69.0 0.0 . 36 . . Atlas-SNP SYCP2 10388 hgsc.bcm.edu hg19 20 58489043 58489043 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SYCP2 NM_014258 exon11 c.G817A p.G273R TGTCTCCAAGCAT . 148.0 6.0 126.0 0.0 . 204 . . Atlas-SNP CDH26 60437 hgsc.bcm.edu hg19 20 58547020 58547020 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDH26 NM_177980 exon4 c.T235C p.F79L CAGCTGTTCAATA . 70.0 4.0 104.0 0.0 . 229 . . Atlas-SNP OGFR 11054 hgsc.bcm.edu hg19 20 61443731 61443731 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OGFR NM_007346 exon7 c.A764G p.D255G CCCTGGACTACTT . 78.0 6.0 47.0 0.0 . 63 . . Atlas-SNP DIDO1 11083 hgsc.bcm.edu hg19 20 61513462 61513462 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DIDO1 NM_001193369 exon16 c.A3846G p.A1282A GGGGGCTGCAGGT . 104.0 5.0 75.0 0.0 . 321 . . Atlas-SNP TMPRSS15 5651 hgsc.bcm.edu hg19 21 19704485 19704485 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TMPRSS15 NM_002772 exon14 c.T1570C p.C524R CTCCACAGTCCGC . 92.0 5.0 73.0 0.0 . 189 . . Atlas-SNP KRTAP19-8 728299 hgsc.bcm.edu hg19 21 32410759 32410759 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KRTAP19-8 NM_001099219 exon1 c.A4G p.S2G AGTAGCTCATGGT . 139.0 6.0 130.0 0.0 . 9 . . Atlas-SNP SYNJ1 8867 hgsc.bcm.edu hg19 21 34053824 34053824 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SYNJ1 NM_203446 exon11 c.T1452C p.A484A TTCAAGAGCTCCA . 112.0 5.0 104.0 0.0 . 253 . . Atlas-SNP LCA5L 150082 hgsc.bcm.edu hg19 21 40800338 40800338 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LCA5L NM_152505 exon4 c.G82A p.A28T TGCATGCTGCAGA . 146.0 6.0 150.0 0.0 . 57 . . Atlas-SNP IGSF5 150084 hgsc.bcm.edu hg19 21 41143130 41143130 + Silent SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 IGSF5,caecum,carcinoma,0,1 IGSF5 NM_001080444 exon4 c.C706A p.R236R GTGATTCGGTGTC . 70.0 3.0 98.0 0.0 . 62 . . Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 41434820 41434820 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DSCAM NM_001271534 exon28 c.A4895G p.K1632R AAACTCTTTGCAT . 88.0 4.0 96.0 0.0 . 347 . . Atlas-SNP AGPAT3 56894 hgsc.bcm.edu hg19 21 45389012 45389012 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AGPAT3 NM_001037553 exon4 c.T362C p.L121P AGGTCCTCGCTAA . 119.0 5.0 119.0 0.0 . 37 . . Atlas-SNP PWP2 5822 hgsc.bcm.edu hg19 21 45547852 45547852 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PWP2 NM_005049 exon18 c.T2180C p.I727T TCCTCATCTACTC . 90.0 4.0 69.0 0.0 . 64 . . Atlas-SNP CECR1 51816 hgsc.bcm.edu hg19 22 17662863 17662863 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CECR1 NM_017424 exon8 c.T1289C p.M430T GTGGCCATCAGAG . 72.0 4.0 64.0 0.0 . 77 . . Atlas-SNP CLTCL1 8218 hgsc.bcm.edu hg19 22 19188997 19188997 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CLTCL1 NM_001835 exon23 c.A3608G p.D1203G CAGCGGTCTCCAA . 107.0 5.0 107.0 0.0 . 115 . . Atlas-SNP CLTCL1 8218 hgsc.bcm.edu hg19 22 19188998 19188998 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CLTCL1 NM_001835 exon23 c.G3607A p.D1203N AGCGGTCTCCAAC . 106.0 5.0 105.0 0.0 . 115 . . Atlas-SNP TANGO2 128989 hgsc.bcm.edu hg19 22 20024329 20024329 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TANGO2 NM_152906 exon2 c.T8C p.I3T TGTGCATCATCTT . 125.0 5.0 98.0 0.0 . 4 . . Atlas-SNP PRAME 23532 hgsc.bcm.edu hg19 22 22892685 22892685 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRAME NM_206954 exon5 c.A416G p.N139S GCCCTGTTTCCAG . 78.0 21.0 112.0 0.0 . 78 . . Atlas-SNP XBP1 7494 hgsc.bcm.edu hg19 22 29195079 29195079 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . XBP1 NM_001079539 exon2 c.A290G p.E97G TCCAGCTCACTCA . 112.0 6.0 86.0 0.0 . 37 . . Atlas-SNP DEPDC5 9681 hgsc.bcm.edu hg19 22 32215113 32215113 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DEPDC5 NM_001242897 exon22 c.A1772G p.Y591C GTGGATACACGCC . 140.0 8.0 130.0 0.0 . 266 . . Atlas-SNP DEPDC5 9681 hgsc.bcm.edu hg19 22 32266729 32266729 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DEPDC5 NM_001242896 exon34 c.A3484G p.S1162G GACAGCAGGTGAG . 148.0 6.0 143.0 0.0 . 266 . . Atlas-SNP SSTR3 6753 hgsc.bcm.edu hg19 22 37602589 37602589 + Silent SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SSTR3 NM_001051 exon2 c.G1254T p.L418L GCCCTACAGGTAG . 53.0 4.0 39.0 0.0 . 42 . . Atlas-SNP SSTR3 6753 hgsc.bcm.edu hg19 22 37602590 37602590 + Missense_Mutation SNP A A C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SSTR3 NM_001051 exon2 c.T1253G p.L418R CCCTACAGGTAGC . 54.0 4.0 39.0 0.0 . 42 . . Atlas-SNP SOX10 6663 hgsc.bcm.edu hg19 22 38379616 38379616 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SOX10 NM_006941 exon2 c.A176G p.Q59R CCGTCCTGCTGCT . 83.0 4.0 57.0 0.0 . 48 . . Atlas-SNP PICK1 9463 hgsc.bcm.edu hg19 22 38470994 38470994 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PICK1 NM_012407 exon13 c.C1103T p.T368I ACACCACATTGGC . 116.0 46.0 107.0 0.0 . 30 . . Atlas-SNP FAM83F 113828 hgsc.bcm.edu hg19 22 40417739 40417739 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM83F NM_138435 exon4 c.A1225G p.R409G ATGCACAGAGACC . 101.0 5.0 106.0 0.0 . 29 . . Atlas-SNP UPK3A 7380 hgsc.bcm.edu hg19 22 45681941 45681941 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UPK3A NM_006953 exon2 c.A172G p.T58A ACTGGCACCCACG . 112.0 7.0 101.0 0.0 . 14 . . Atlas-SNP SBF1 6305 hgsc.bcm.edu hg19 22 50905072 50905072 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SBF1 NM_002972 exon6 c.T617C p.V206A CGGCTGACGGGCA . 124.0 6.0 128.0 0.0 . 211 . . Atlas-SNP ARSF 416 hgsc.bcm.edu hg19 X 2994595 2994595 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARSF NM_004042 exon4 c.T168C p.P56P GACGCCTCACATC . 66.0 5.0 48.0 0.0 . 97 . . Atlas-SNP MXRA5 25878 hgsc.bcm.edu hg19 X 3241039 3241039 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MXRA5 NM_015419 exon5 c.A2687G p.E896G ATCTCCTCAGTCT . 112.0 5.0 106.0 0.0 . 815 . . Atlas-SNP PIGA 5277 hgsc.bcm.edu hg19 X 15349573 15349573 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PIGA NM_002641 exon2 c.T480C p.A160A GACATCAGCAAAT . 89.0 6.0 72.0 0.0 . 34 . . Atlas-SNP SCML1 6322 hgsc.bcm.edu hg19 X 17767571 17767571 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SCML1 NM_001037540 exon5 c.A250G p.R84G ATTCGTAGAAAGG . 128.0 6.0 120.0 0.0 . 55 . . Atlas-SNP MAGEB16 139604 hgsc.bcm.edu hg19 X 35820408 35820408 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MAGEB16 NM_001099921 exon2 c.A95G p.K32R TCTCCAAGGCTCT . 87.0 4.0 87.0 0.0 . 64 . . Atlas-SNP CXorf30 645090 hgsc.bcm.edu hg19 X 36337383 36337383 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CXorf30 NM_001098843 exon12 c.A742G p.S248G TATGAGAGTTCTG . 129.0 8.0 100.0 0.0 . 76 . . Atlas-SNP FAM47C 442444 hgsc.bcm.edu hg19 X 37028804 37028804 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM47C NM_001013736 exon1 c.T2321C p.L774P CCCATCTCCACCC . 49.0 4.0 38.0 0.0 . 267 . . Atlas-SNP USP9X 8239 hgsc.bcm.edu hg19 X 41075804 41075804 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . USP9X NM_001039591 exon35 c.A5984G p.N1995S AACAGAACGTACA . 112.0 5.0 116.0 0.0 . 385 . . Atlas-SNP KDM6A 7403 hgsc.bcm.edu hg19 X 44941973 44941973 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KDM6A NM_021140 exon22 c.A3223G p.R1075G AGGAGGAGGAAAG . 72.0 5.0 78.0 0.0 . 274 . . Atlas-SNP RBM10 8241 hgsc.bcm.edu hg19 X 47041607 47041607 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RBM10 NM_001204468 exon17 c.A2027G p.E676G ATGGGGAGAGGCG . 94.0 4.0 99.0 0.0 . 117 . . Atlas-SNP FTSJ1 24140 hgsc.bcm.edu hg19 X 48341394 48341394 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FTSJ1 NM_012280 exon12 c.T978C p.S326S AATGAGTTGTTCA . 60.0 4.0 60.0 0.0 . 21 . . Atlas-SNP WDR13 64743 hgsc.bcm.edu hg19 X 48458000 48458000 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDR13 NM_017883 exon4 c.T418C p.S140P CCCACGTCAGCAG . 96.0 5.0 85.0 0.0 . 96 . . Atlas-SNP HDAC6 10013 hgsc.bcm.edu hg19 X 48663924 48663924 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HDAC6 NM_006044 exon5 c.T391C p.F131L GTGTCCTTTCAGG . 88.0 4.0 89.0 0.0 . 111 . . Atlas-SNP AKAP4 8852 hgsc.bcm.edu hg19 X 49963345 49963345 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AKAP4 NM_003886 exon2 c.A86G p.Y29C GGGTTGTAGAGAT . 118.0 7.0 79.0 0.0 . 131 . . Atlas-SNP TRO 7216 hgsc.bcm.edu hg19 X 54955827 54955827 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRO NM_001039705 exon12 c.A2670G p.G890G CTTTGGAGGCATA . 119.0 5.0 145.0 0.0 . 246 . . Atlas-SNP LAS1L 81887 hgsc.bcm.edu hg19 X 64754546 64754546 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LAS1L NM_031206 exon1 c.A50G p.D17G ACGAGATCCATCC . 104.0 5.0 78.0 0.0 . 72 . . Atlas-SNP SLC7A3 84889 hgsc.bcm.edu hg19 X 70146023 70146023 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC7A3 NM_032803 exon11 c.T1626C p.P542P CAAAGCAGGCACC . 87.0 4.0 69.0 0.0 . 76 . . Atlas-SNP MED12 9968 hgsc.bcm.edu hg19 X 70344673 70344673 + Missense_Mutation SNP C C A novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MED12 NM_005120 exon14 c.C2034A p.D678E TGAGGACATGGAG . 100.0 4.0 89.0 0.0 . 984 . . Atlas-SNP PHKA1 5255 hgsc.bcm.edu hg19 X 71873287 71873287 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PHKA1 NM_001172436 exon11 c.A1135G p.R379G TCACCCTGTCAGG . 85.0 4.0 88.0 0.0 . 129 . . Atlas-SNP HDX 139324 hgsc.bcm.edu hg19 X 83577009 83577009 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HDX NM_144657 exon10 c.A1961G p.D654G GGTAAATCTGACA . 97.0 4.0 109.0 0.0 . 124 . . Atlas-SNP APOOL 139322 hgsc.bcm.edu hg19 X 84306506 84306506 + Missense_Mutation SNP T T G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . APOOL NM_198450 exon3 c.T232G p.W78G ATTGGCTGGTGCA . 73.0 4.0 67.0 0.0 . 20 . . Atlas-SNP CSTF2 1478 hgsc.bcm.edu hg19 X 100078882 100078882 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CSTF2 NM_001325 exon5 c.T452C p.V151A TCTGTGTCCAGAA . 74.0 4.0 53.0 0.0 . 47 . . Atlas-SNP TCEAL6 158931 hgsc.bcm.edu hg19 X 101395773 101395773 + Missense_Mutation SNP G G T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TCEAL6 NM_001006938 exon3 c.C531A p.D177E CCCGTTGTCCCCT . 143.0 6.0 79.0 0.0 . 27 . . Atlas-SNP TCEAL6 158931 hgsc.bcm.edu hg19 X 101395778 101395778 + Missense_Mutation SNP C C T novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TCEAL6 NM_001006938 exon3 c.G526A p.G176R TGTCCCCTTGGGC . 140.0 19.0 74.0 0.0 . 27 . . Atlas-SNP TCEAL6 158931 hgsc.bcm.edu hg19 X 101395786 101395786 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TCEAL6 NM_001006938 exon3 c.T518C p.F173S TGGGCGAATGGAT . 165.0 7.0 89.0 0.0 . 27 . . Atlas-SNP GPRASP2 114928 hgsc.bcm.edu hg19 X 101970497 101970497 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GPRASP2 NM_138437 exon4 c.T700C p.S234P ACAGCGTCTTCTT . 79.0 4.0 92.0 0.0 . 89 . . Atlas-SNP NRK 203447 hgsc.bcm.edu hg19 X 105153617 105153617 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NRK NM_198465 exon13 c.T1984C p.L662L GGTCCGTTGCAAA . 100.0 4.0 73.0 0.0 . 321 . . Atlas-SNP TBC1D8B 54885 hgsc.bcm.edu hg19 X 106116905 106116905 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TBC1D8B NM_017752 exon21 c.A3073G p.R1025G TTACTCAGGATGG . 112.0 5.0 94.0 0.0 . 181 . . Atlas-SNP GUCY2F 2986 hgsc.bcm.edu hg19 X 108691369 108691369 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GUCY2F NM_001522 exon6 c.A1498G p.I500V CTTTGATCAACTG . 52.0 5.0 45.0 0.0 . 178 . . Atlas-SNP DCX 1641 hgsc.bcm.edu hg19 X 110574142 110574142 + Missense_Mutation SNP G G T rs371447966 alternate_allele TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DCX NM_001195553 exon5 c.C936A p.N312K TTGGTCGTTACCT . 109.0 72.0 87.0 0.0 . 158 . . Atlas-SNP MAP7D3 79649 hgsc.bcm.edu hg19 X 135328496 135328496 + Silent SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MAP7D3 NM_024597 exon2 c.T75C p.A25A TGCTGCAGCAACT . 143.0 6.0 122.0 0.0 . 102 . . Atlas-SNP GABRQ 55879 hgsc.bcm.edu hg19 X 151815555 151815555 + Silent SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GABRQ NM_018558 exon4 c.T453C p.A151A GGATGCTTTCGTG . 98.0 4.0 120.0 0.0 . 131 . . Atlas-SNP PNCK 139728 hgsc.bcm.edu hg19 X 152937342 152937342 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PNCK NM_001039582 exon5 c.A656G p.D219G TTGAGGTCCCGGT . 134.0 8.0 132.0 0.0 . 70 . . Atlas-SNP L1CAM 3897 hgsc.bcm.edu hg19 X 153128287 153128287 + Missense_Mutation SNP A A G novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . L1CAM NM_000425 exon28 c.T3605C p.L1202P CTGCCCAGGGGCT . 72.0 5.0 63.0 0.0 . 189 . . Atlas-SNP ATP6AP1 537 hgsc.bcm.edu hg19 X 153664091 153664091 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATP6AP1 NM_001183 exon10 c.T1267C p.S423P TTCTTCTCCCCCG . 104.0 5.0 98.0 0.0 . 46 . . Atlas-SNP TBL1Y 90665 hgsc.bcm.edu hg19 Y 6938816 6938816 + Missense_Mutation SNP T T C novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TBL1Y NM_134258 exon9 c.T646C p.S216P GGGGGCTCCACCC . 95.0 5.0 122.0 0.0 . 15 . . Atlas-SNP CERS3 204219 hgsc.bcm.edu hg19 15 101009634 101009634 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_178842 exon11 c.795delC p.F265fs . . 138.0 10.0 151.0 0.0 . . . . Atlas-INDEL PEAR1 375033 hgsc.bcm.edu hg19 1 156883056 156883056 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PEAR1 NM_001080471 exon19 c.2492delA p.N831fs . . 212.0 14.0 91.0 0.0 . 118 . . Atlas-INDEL MIR15A 406948 hgsc.bcm.edu hg19 13 50623292 50623292 + RNA DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . . . . . . . 152.0 11.0 218.0 0.0 . . . . Atlas-INDEL QRICH2 84074 hgsc.bcm.edu hg19 17 74274145 74274145 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . QRICH2 NM_032134 exon15 c.4545delC p.G1515fs . . 166.0 10.0 139.0 0.0 . 143 . . Atlas-INDEL SLC26A4 5172 hgsc.bcm.edu hg19 7 107340574 107340574 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC26A4 NM_000441 exon15 c.1660delA p.I554fs . . 197.0 12.0 136.0 0.0 . 117 . . Atlas-INDEL GJA8 2703 hgsc.bcm.edu hg19 1 147380686 147380686 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GJA8 NM_005267 exon2 c.603delG p.E201fs . . 148.0 10.0 89.0 0.0 . 108 . . Atlas-INDEL SUCO 51430 hgsc.bcm.edu hg19 1 172558537 172558537 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_014283 exon18 c.2295delT p.I765fs . . 138.0 10.0 76.0 0.0 . . . . Atlas-INDEL HOXA4 3201 hgsc.bcm.edu hg19 7 27170333 27170333 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HOXA4 NM_002141 exon1 c.21delG p.L7fs . . 213.0 14.0 170.0 0.0 . 21 . . Atlas-INDEL MDN1 23195 hgsc.bcm.edu hg19 6 90504517 90504517 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MDN1 NM_014611 exon3 c.334delG p.A112fs . . 156.0 10.0 94.0 0.0 . 478 . . Atlas-INDEL SNRNP200 23020 hgsc.bcm.edu hg19 2 96958714 96958714 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SNRNP200 NM_014014 exon16 c.2157delT p.N719fs . . 175.0 13.0 160.0 0.0 . 195 . . Atlas-INDEL CEP44 80817 hgsc.bcm.edu hg19 4 175224892 175224892 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CEP44 NM_001040157 exon5 c.275delC p.T92fs . . 178.0 11.0 182.0 0.0 . 35 . . Atlas-INDEL OGT 8473 hgsc.bcm.edu hg19 X 70781722 70781722 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OGT NM_181672 exon15 c.1948delC p.L650fs . . 146.0 10.0 173.0 0.0 . 207 . . Atlas-INDEL CR1 1378 hgsc.bcm.edu hg19 1 207700165 207700165 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CR1 NM_000573 exon6 c.953delC p.P318fs . . 17.0 11.0 5.0 0.0 . 354 . . Atlas-INDEL MAP7D3 79649 hgsc.bcm.edu hg19 X 135328464 135328464 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MAP7D3 NM_024597 exon2 c.108delG p.K36fs . . 158.0 10.0 140.0 0.0 . 102 . . Atlas-INDEL SDPR 8436 hgsc.bcm.edu hg19 2 192701068 192701068 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SDPR NM_004657 exon2 c.860delG p.S287fs . . 209.0 13.0 170.0 0.0 . 67 . . Atlas-INDEL ELF5 2001 hgsc.bcm.edu hg19 11 34511593 34511593 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ELF5 NM_198381 exon4 c.400delA p.N134fs . . 156.0 10.0 97.0 0.0 . 21 . . Atlas-INDEL SLC39A8 64116 hgsc.bcm.edu hg19 4 103226251 103226251 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC39A8 NM_022154 exon4 c.571delA p.K191fs . . 129.0 10.0 276.0 0.0 . 24 . . Atlas-INDEL AGBL1 123624 hgsc.bcm.edu hg19 15 87531281 87531281 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AGBL1 NM_152336 exon23 c.3146delC p.T1049fs . . 138.0 11.0 180.0 0.0 . 151 . . Atlas-INDEL GRB14 2888 hgsc.bcm.edu hg19 2 165476321 165476321 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GRB14 NM_004490 exon2 c.201delG p.K67fs . . 253.0 16.0 271.0 0.0 . 73 . . Atlas-INDEL SIGLEC7 27036 hgsc.bcm.edu hg19 19 51650558 51650558 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SIGLEC7 NM_014385 exon6 c.1204delA p.R402fs . . 121.0 10.0 118.0 0.0 . 74 . . Atlas-INDEL USP14 9097 hgsc.bcm.edu hg19 18 210016 210016 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . USP14 NM_005151 exon14 c.1209delC p.P403fs . . 180.0 13.0 161.0 0.0 . 41 . . Atlas-INDEL JAK1 3716 hgsc.bcm.edu hg19 1 65310468 65310468 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . JAK1 NM_002227 exon16 c.2221delG p.G741fs . . 187.0 13.0 116.0 0.0 . 209 . . Atlas-INDEL GPR115 221393 hgsc.bcm.edu hg19 6 47680293 47680293 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GPR115 NM_153838 exon5 c.500delT p.L167X . . 176.0 13.0 133.0 0.0 . 140 . . Atlas-INDEL IL20RA 53832 hgsc.bcm.edu hg19 6 137322699 137322699 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IL20RA NM_014432 exon7 c.1659delC p.N553fs . . 225.0 14.0 194.0 0.0 . 54 . . Atlas-INDEL RAG1 5896 hgsc.bcm.edu hg19 11 36594873 36594873 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RAG1 NM_000448 exon2 c.18delA p.P6fs . . 183.0 11.0 133.0 0.0 . 151 . . Atlas-INDEL SELENBP1 8991 hgsc.bcm.edu hg19 1 151339214 151339214 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SELENBP1 NM_001258289 exon6 c.775delG p.A259fs . . 163.0 10.0 88.0 0.0 . 44 . . Atlas-INDEL DIAPH2 1730 hgsc.bcm.edu hg19 X 96396689 96396689 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DIAPH2 NM_007309 exon22 c.2614delC p.Q872fs . . 148.0 11.0 158.0 0.0 . 148 . . Atlas-INDEL POTEC 388468 hgsc.bcm.edu hg19 18 14542924 14542924 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . POTEC NM_001137671 exon1 c.223delA p.S75fs . . 461.0 29.0 422.0 0.0 . 129 . . Atlas-INDEL CDCA4 55038 hgsc.bcm.edu hg19 14 105477749 105477749 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDCA4 NM_017955 exon2 c.519delC p.N173fs . . 174.0 12.0 133.0 0.0 . 18 . . Atlas-INDEL ANKRD30A 91074 hgsc.bcm.edu hg19 10 37505286 37505286 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKRD30A NM_052997 exon32 c.2878delC p.Q960fs . . 339.0 22.0 325.0 0.0 . 448 . . Atlas-INDEL CAAP1 79886 hgsc.bcm.edu hg19 9 26886160 26886160 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_024828 exon3 c.532delC p.L178fs . . 197.0 12.0 194.0 0.0 . . . . Atlas-INDEL VEZT 55591 hgsc.bcm.edu hg19 12 95694123 95694123 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VEZT NM_017599 exon12 c.2013delT p.G671fs . . 193.0 12.0 93.0 0.0 . 106 . . Atlas-INDEL WDFY3 23001 hgsc.bcm.edu hg19 4 85614081 85614081 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDFY3 NM_014991 exon59 c.9007delC p.H3003fs . . 164.0 10.0 103.0 0.0 . 314 . . Atlas-INDEL NUP155 9631 hgsc.bcm.edu hg19 5 37309279 37309279 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NUP155 NM_153485 exon24 c.2720delT p.I907fs . . 198.0 12.0 175.0 0.0 . 116 . . Atlas-INDEL POLR2B 5431 hgsc.bcm.edu hg19 4 57877166 57877166 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . POLR2B NM_000938 exon13 c.1699delA p.I567fs . . 145.0 11.0 161.0 0.0 . 108 . . Atlas-INDEL CLSPN 63967 hgsc.bcm.edu hg19 1 36228077 36228077 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CLSPN NM_001190481 exon5 c.751delG p.E251fs . . 141.0 11.0 100.0 0.0 . 248 . . Atlas-INDEL CDHR5 53841 hgsc.bcm.edu hg19 11 618994 618994 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDHR5 NM_021924 exon13 c.1566delG p.P522fs . . 166.0 11.0 91.0 0.0 . 77 . . Atlas-INDEL SCN9A 6335 hgsc.bcm.edu hg19 2 167141203 167141203 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 SCN9A_ENST00000375387,right_upper_lobe,carcinoma,+1,1 SCN9A NM_002977 exon12 c.1735delG p.G579fs . . 152.0 11.0 146.0 0.0 . 296 . . Atlas-INDEL UBE2J1 51465 hgsc.bcm.edu hg19 6 90048232 90048232 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UBE2J1 NM_016021 exon4 c.269delT p.I90fs . . 195.0 13.0 145.0 0.0 . 28 . . Atlas-INDEL NFYC 4802 hgsc.bcm.edu hg19 1 41204559 41204559 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NFYC NM_001142587 exon2 c.43delG p.A15fs . . 194.0 12.0 96.0 0.0 . 39 . . Atlas-INDEL COL5A3 50509 hgsc.bcm.edu hg19 19 10087955 10087955 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COL5A3 NM_015719 exon44 c.3239delA p.D1080fs . . 129.0 10.0 115.0 0.0 . 243 . . Atlas-INDEL PKN2 5586 hgsc.bcm.edu hg19 1 89270151 89270151 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PKN2 NM_006256 exon9 c.1358delA p.D453fs . . 223.0 14.0 176.0 0.0 . 109 . . Atlas-INDEL ACAN 176 hgsc.bcm.edu hg19 15 89386594 89386594 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACAN NM_001135 exon6 c.765delC p.V255fs . . 182.0 12.0 151.0 0.0 . 220 . . Atlas-INDEL BCL7A 605 hgsc.bcm.edu hg19 12 122473237 122473237 + Splice_Site DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 BCL7A,mouth,carcinoma,0,1 BCL7A NM_020993 exon3 c.175-1A>- . . . 216.0 13.0 187.0 0.0 . 31 . . Atlas-INDEL PNISR 25957 hgsc.bcm.edu hg19 6 99848584 99848584 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 PNISR NM_015491 exon11 c.2251delC p.H751fs . . 241.0 16.0 146.0 0.0 . 74 . . Atlas-INDEL COG2 22796 hgsc.bcm.edu hg19 1 230800279 230800279 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COG2 NM_007357 exon5 c.430delG p.E144fs . . 183.0 13.0 114.0 0.0 . 61 . . Atlas-INDEL OR8K1 390157 hgsc.bcm.edu hg19 11 56114060 56114060 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR8K1 NM_001002907 exon1 c.545delA p.Y182fs . . 192.0 13.0 126.0 0.0 . 93 . . Atlas-INDEL LRRC32 2615 hgsc.bcm.edu hg19 11 76370772 76370772 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRRC32 NM_001128922 exon3 c.1866delA p.G622fs . . 137.0 12.0 93.0 0.0 . 74 . . Atlas-INDEL NHLRC2 374354 hgsc.bcm.edu hg19 10 115657964 115657964 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 NHLRC2,colon,carcinoma,0,1 NHLRC2 NM_198514 exon6 c.1134delG p.K378fs . . 265.0 16.0 222.0 0.0 . 56 . . Atlas-INDEL ABCA5 23461 hgsc.bcm.edu hg19 17 67255885 67255885 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABCA5 NM_018672 exon27 c.3694delT p.Y1232fs . . 265.0 18.0 137.0 0.0 . 162 . . Atlas-INDEL CTGF 1490 hgsc.bcm.edu hg19 6 132270568 132270568 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CTGF NM_001901 exon5 c.887delA p.H296fs . . 179.0 14.0 102.0 0.0 . 36 . . Atlas-INDEL TCERG1L 256536 hgsc.bcm.edu hg19 10 132891517 132891517 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TCERG1L NM_174937 exon12 c.1670delG p.R557fs . . 134.0 10.0 126.0 0.0 . 91 . . Atlas-INDEL LRFN4 78999 hgsc.bcm.edu hg19 11 66627324 66627324 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRFN4 NM_024036 exon2 c.1565delT p.V522fs . . 149.0 10.0 76.0 0.0 . 25 . . Atlas-INDEL ABHD12B 145447 hgsc.bcm.edu hg19 14 51368597 51368597 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABHD12B NM_001206673 exon10 c.830delG p.R277fs . . 113.0 11.0 85.0 0.0 . 53 . . Atlas-INDEL PCDH15 65217 hgsc.bcm.edu hg19 10 55582820 55582820 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PCDH15 NM_001142763 exon35 c.4688delT p.I1563fs . . 180.0 11.0 164.0 0.0 . 1715 . . Atlas-INDEL TMEM237 65062 hgsc.bcm.edu hg19 2 202503720 202503720 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TMEM237 NM_001044385 exon3 c.129delC p.N43fs . . 220.0 16.0 224.0 0.0 . 21 . . Atlas-INDEL LRRC58 116064 hgsc.bcm.edu hg19 3 120054700 120054700 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRRC58 NM_001099678 exon2 c.602delT p.I201fs . . 156.0 12.0 127.0 0.0 . 18 . . Atlas-INDEL LDLRAD1 388633 hgsc.bcm.edu hg19 1 54476004 54476004 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LDLRAD1 NM_001010978 exon5 c.421delT p.C141fs . . 164.0 11.0 90.0 0.0 . 22 . . Atlas-INDEL ABCA8 10351 hgsc.bcm.edu hg19 17 66918423 66918423 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABCA8 NM_007168 exon11 c.1462delG p.E488fs . . 197.0 14.0 92.0 0.0 . 213 . . Atlas-INDEL TTC39C 125488 hgsc.bcm.edu hg19 18 21662914 21662914 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TTC39C NM_001135993 exon6 c.852delG p.P284fs . . 162.0 10.0 127.0 0.0 . 83 . . Atlas-INDEL SEC14L1 6397 hgsc.bcm.edu hg19 17 75189591 75189591 + Frame_Shift_Del DEL A A - rs34381783 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SEC14L1 NM_001204408 exon8 c.433delG p.E145fs . . 174.0 12.0 110.0 0.0 . 81 . . Atlas-INDEL THOC3 84321 hgsc.bcm.edu hg19 5 175394993 175394993 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . THOC3 NM_032361 exon1 c.220delT p.S74fs . . 169.0 13.0 83.0 0.0 . 11 . . Atlas-INDEL DNMT3B 1789 hgsc.bcm.edu hg19 20 31369189 31369189 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DNMT3B NM_175850 exon3 c.208delA p.R70fs . . 144.0 10.0 127.0 0.0 . 196 . . Atlas-INDEL SRCAP 10847 hgsc.bcm.edu hg19 16 30735727 30735727 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 SRCAP,NS,carcinoma,0,2 SRCAP NM_006662 exon25 c.4981delC p.Q1661fs . . 163.0 10.0 116.0 0.0 . 298 . . Atlas-INDEL TENM4 26011 hgsc.bcm.edu hg19 11 78614323 78614323 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_001098816 exon7 c.740delT p.L247fs . . 165.0 10.0 94.0 0.0 . . . . Atlas-INDEL TCEAL4 79921 hgsc.bcm.edu hg19 X 102841728 102841728 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TCEAL4 NM_001006935 exon3 c.124delG p.E42fs . . 142.0 10.0 115.0 0.0 . 18 . . Atlas-INDEL RYR2 6262 hgsc.bcm.edu hg19 1 237604620 237604620 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RYR2 NM_001035 exon13 c.1006delG p.E336fs . . 152.0 10.0 100.0 0.0 . 1273 . . Atlas-INDEL GRID2 2895 hgsc.bcm.edu hg19 4 94690497 94690497 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GRID2 NM_001510 exon15 c.2496delA p.A832fs . . 143.0 10.0 182.0 0.0 . 233 . . Atlas-INDEL GNAI1 2770 hgsc.bcm.edu hg19 7 79842146 79842146 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GNAI1 NM_002069 exon7 c.834delC p.I278fs . . 246.0 15.0 183.0 0.0 . 44 . . Atlas-INDEL TTN 7273 hgsc.bcm.edu hg19 2 179554548 179554548 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TTN NM_001267550 exon122 c.31839delA p.P10613fs . . 131.0 11.0 101.0 0.0 . 18412 . . Atlas-INDEL TAOK1 57551 hgsc.bcm.edu hg19 17 27805327 27805327 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TAOK1 NM_025142 exon6 c.410delA p.Q137fs . . 234.0 15.0 213.0 0.0 . 151 . . Atlas-INDEL PPP4R1 9989 hgsc.bcm.edu hg19 18 9557277 9557277 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PPP4R1 NM_001042388 exon15 c.2133delA p.L711fs . . 149.0 11.0 166.0 0.0 . 63 . . Atlas-INDEL TCERG1 10915 hgsc.bcm.edu hg19 5 145890008 145890008 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TCERG1 NM_006706 exon22 c.3099delC p.S1033fs . . 119.0 10.0 69.0 0.0 . 148 . . Atlas-INDEL CPSF1 29894 hgsc.bcm.edu hg19 8 145619169 145619169 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CPSF1 NM_013291 exon35 c.3945delG p.P1315fs . . 274.0 17.0 87.0 0.0 . 92 . . Atlas-INDEL EXO1 9156 hgsc.bcm.edu hg19 1 242042452 242042452 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EXO1 NM_130398 exon13 c.1915delT p.S639fs . . 226.0 17.0 136.0 0.0 . 103 . . Atlas-INDEL MEAF6 64769 hgsc.bcm.edu hg19 1 37961495 37961495 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MEAF6 NM_022756 exon7 c.589delC p.P197fs . . 200.0 12.0 132.0 0.0 . 25 . . Atlas-INDEL USP14 9097 hgsc.bcm.edu hg19 18 198083 198083 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . USP14 NM_005151 exon9 c.711delT p.S237fs . . 172.0 12.0 117.0 0.0 . 41 . . Atlas-INDEL OXCT1 5019 hgsc.bcm.edu hg19 5 41862804 41862804 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OXCT1 NM_000436 exon2 c.128delA p.Y43fs . . 211.0 15.0 161.0 0.0 . 54 . . Atlas-INDEL ANGEL2 90806 hgsc.bcm.edu hg19 1 213181561 213181561 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANGEL2 NM_144567 exon3 c.634delG p.D212fs . . 219.0 14.0 126.0 0.0 . 45 . . Atlas-INDEL MRPL3 11222 hgsc.bcm.edu hg19 3 131188575 131188575 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 MRPL3 NM_007208 exon8 c.782delT p.M261fs . . 153.0 10.0 119.0 0.0 . 32 . . Atlas-INDEL RASGRP1 10125 hgsc.bcm.edu hg19 15 38810590 38810590 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RASGRP1 NM_001128602 exon5 c.425delT p.M142fs . . 135.0 10.0 105.0 0.0 . 50 . . Atlas-INDEL FAM208A 23272 hgsc.bcm.edu hg19 3 56694990 56694990 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM208A NM_001112736 exon10 c.1217delT p.I406fs . . 230.0 16.0 131.0 0.0 . 113 . . Atlas-INDEL LARP7 51574 hgsc.bcm.edu hg19 4 113567545 113567545 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 LARP7 NM_001267039 exon5 c.261delG p.M87fs . . 179.0 11.0 259.0 0.0 . 54 . . Atlas-INDEL PLAG1 5324 hgsc.bcm.edu hg19 8 57078932 57078932 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLAG1 NM_002655 exon5 c.1374delA p.P458fs . . 229.0 15.0 88.0 0.0 . 123 . . Atlas-INDEL ANKRD17 26057 hgsc.bcm.edu hg19 4 73957752 73957752 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKRD17 NM_032217 exon29 c.5594delC p.T1865fs . . 197.0 14.0 189.0 0.0 . 214 . . Atlas-INDEL SPATA2L 124044 hgsc.bcm.edu hg19 16 89764134 89764134 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SPATA2L NM_152339 exon3 c.884delC p.A295fs . . 138.0 10.0 92.0 0.0 . 16 . . Atlas-INDEL STYX 6815 hgsc.bcm.edu hg19 14 53213189 53213189 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . STYX NM_001130701 exon4 c.135delG p.M45fs . . 203.0 14.0 180.0 0.0 . 14 . . Atlas-INDEL SRA1 10011 hgsc.bcm.edu hg19 5 139936736 139936736 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SRA1 NM_001253764 exon1 c.303delA p.P101fs . . 189.0 15.0 103.0 0.0 . 24 . . Atlas-INDEL BEND3 57673 hgsc.bcm.edu hg19 6 107389947 107389947 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BEND3 NM_001080450 exon5 c.2449delT p.C817fs . . 231.0 14.0 119.0 0.0 . 70 . . Atlas-Indel,Pindel ADAMTS19 171019 hgsc.bcm.edu hg19 5 128994381 128994381 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ADAMTS19 NM_133638 exon15 c.2357delG p.G786fs . . 164.0 10.0 78.0 0.0 . 216 . . Atlas-INDEL ZNF343 79175 hgsc.bcm.edu hg19 20 2474194 2474194 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF343 NM_024325 exon4 c.149delA p.Q50fs . . 159.0 10.0 146.0 0.0 . 47 . . Atlas-INDEL DLD 1738 hgsc.bcm.edu hg19 7 107555996 107555996 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DLD NM_000108 exon9 c.729delA p.E243fs . . 155.0 13.0 112.0 0.0 . 72 . . Atlas-INDEL ALCAM 214 hgsc.bcm.edu hg19 3 105243184 105243184 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ALCAM NM_001627 exon3 c.225delG p.K75fs . . 159.0 10.0 97.0 0.0 . 71 . . Atlas-INDEL KNTC1 9735 hgsc.bcm.edu hg19 12 123014679 123014679 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KNTC1 NM_014708 exon2 c.68delG p.R23fs . . 154.0 10.0 103.0 0.0 . 182 . . Atlas-INDEL SMC1A 8243 hgsc.bcm.edu hg19 X 53407993 53407993 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SMC1A NM_006306 exon23 c.3454delT p.F1152fs . . 125.0 10.0 125.0 0.0 . 112 . . Atlas-INDEL DLGAP5 9787 hgsc.bcm.edu hg19 14 55625371 55625371 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DLGAP5 NM_014750 exon14 c.1743delT p.N581fs . . 205.0 13.0 180.0 0.0 . 84 . . Atlas-INDEL GZMA 3001 hgsc.bcm.edu hg19 5 54403626 54403626 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GZMA NM_006144 exon3 c.219delC p.N73fs . . 163.0 10.0 85.0 0.0 . 60 . . Atlas-INDEL ZNF701 55762 hgsc.bcm.edu hg19 19 53085947 53085947 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF701 NM_001172655 exon5 c.832delG p.E278fs . . 125.0 10.0 91.0 0.0 . 44 . . Atlas-INDEL ADAMTS3 9508 hgsc.bcm.edu hg19 4 73280611 73280611 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ADAMTS3 NM_014243 exon4 c.583delG p.G195fs . . 156.0 10.0 124.0 0.0 . 164 . . Atlas-INDEL PIEZO2 63895 hgsc.bcm.edu hg19 18 10671532 10671532 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_022068 exon52 c.8252delC p.T2751fs . . 184.0 12.0 163.0 0.0 . . . . Atlas-INDEL IGSF9 57549 hgsc.bcm.edu hg19 1 159900106 159900106 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IGSF9 NM_001135050 exon15 c.1938delA p.P646fs . . 154.0 10.0 62.0 0.0 . 123 . . Atlas-INDEL ITGAD 3681 hgsc.bcm.edu hg19 16 31413551 31413551 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ITGAD NM_005353 exon6 c.542delA p.E181fs . . 144.0 10.0 143.0 0.0 . 154 . . Atlas-INDEL SIMC1 375484 hgsc.bcm.edu hg19 5 175740835 175740835 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_198567 exon4 c.573delG p.Q191fs . . 171.0 11.0 113.0 0.0 . . . . Atlas-INDEL METTL17 64745 hgsc.bcm.edu hg19 14 21462740 21462740 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 METTL17,NS,carcinoma,0,1 METTL17 NM_022734 exon8 c.735delC p.V245fs . . 172.0 11.0 162.0 0.0 . 46 . . Atlas-INDEL PSMB2 5690 hgsc.bcm.edu hg19 1 36101937 36101937 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PSMB2 NM_002794 exon2 c.189delC p.N63fs . . 344.0 26.0 170.0 0.0 . 9 . . Atlas-INDEL ACPP 55 hgsc.bcm.edu hg19 3 132075605 132075605 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ACPP_ENST00000351273,NS,carcinoma,0,2 ACPP NM_001099 exon10 c.1043delG p.S348fs . . 165.0 10.0 115.0 0.0 . 118 . . Atlas-INDEL DHX35 60625 hgsc.bcm.edu hg19 20 37650554 37650554 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DHX35 NM_021931 exon16 c.1568delT p.V523fs . . 179.0 12.0 187.0 0.0 . 82 . . Atlas-INDEL ZNF532 55205 hgsc.bcm.edu hg19 18 56651255 56651255 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF532 NM_018181 exon11 c.3462delT p.P1154fs . . 253.0 16.0 223.0 0.0 . 108 . . Atlas-INDEL LCE2D 353141 hgsc.bcm.edu hg19 1 152636615 152636615 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LCE2D NM_178430 exon2 c.33delG p.Q11fs . . 146.0 10.0 113.0 0.0 . 26 . . Atlas-INDEL MNDA 4332 hgsc.bcm.edu hg19 1 158813107 158813107 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MNDA NM_002432 exon3 c.303delG p.V101fs . . 116.0 12.0 75.0 0.0 . 147 . . Atlas-INDEL NAALAD2 10003 hgsc.bcm.edu hg19 11 89883695 89883695 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NAALAD2 NM_005467 exon5 c.528delC p.F176fs . . 166.0 11.0 136.0 0.0 . 113 . . Atlas-INDEL SGSM2 9905 hgsc.bcm.edu hg19 17 2282488 2282488 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SGSM2 NM_014853 exon23 c.3057delG p.K1019fs . . 200.0 12.0 244.0 0.0 . 60 . . Atlas-INDEL DDX60 55601 hgsc.bcm.edu hg19 4 169223484 169223484 + Frame_Shift_Del DEL A A - rs34458540 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DDX60 NM_017631 exon6 c.691delG p.G231fs . . 152.0 12.0 158.0 0.0 . 304 . . Atlas-INDEL HSPG2 3339 hgsc.bcm.edu hg19 1 22217107 22217107 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 HSPG2,leg,malignant_melanoma,0,1 HSPG2 NM_005529 exon4 c.326delG p.R109fs . . 174.0 11.0 105.0 0.0 . 311 . . Atlas-INDEL KRT16 3868 hgsc.bcm.edu hg19 17 39766478 39766478 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KRT16 NM_005557 exon7 c.1292delA p.Q431fs . . 173.0 11.0 187.0 0.0 . 45 . . Atlas-INDEL PCIF1 63935 hgsc.bcm.edu hg19 20 44569759 44569759 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PCIF1 NM_022104 exon7 c.585delG p.L195fs . . 166.0 10.0 130.0 0.0 . 51 . . Atlas-INDEL SCN4A 6329 hgsc.bcm.edu hg19 17 62021202 62021202 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SCN4A NM_000334 exon22 c.3922delA p.K1308fs . . 251.0 17.0 176.0 0.0 . 205 . . Atlas-INDEL PRKRIR 5612 hgsc.bcm.edu hg19 11 76066662 76066662 + Splice_Site DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRKRIR NM_004705 exon5 c.355+1A>- . . . 120.0 12.0 82.0 0.0 . 65 . . Atlas-INDEL SRSF4 6429 hgsc.bcm.edu hg19 1 29475675 29475675 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SRSF4 NM_005626 exon6 c.733delG p.E245fs . . 166.0 10.0 106.0 0.0 . 44 . . Atlas-INDEL N4BP1 9683 hgsc.bcm.edu hg19 16 48596281 48596281 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . N4BP1 NM_153029 exon2 c.274delG p.V92fs . . 142.0 10.0 126.0 0.0 . 121 . . Atlas-INDEL PLCB4 5332 hgsc.bcm.edu hg19 20 9352974 9352974 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLCB4 NM_182797 exon9 c.609delA p.A203fs . . 215.0 13.0 239.0 0.0 . 204 . . Atlas-INDEL WDFY4 57705 hgsc.bcm.edu hg19 10 50015979 50015979 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDFY4 NM_020945 exon28 c.4813delT p.S1605fs . . 151.0 10.0 128.0 0.0 . 205 . . Atlas-INDEL DOCK10 55619 hgsc.bcm.edu hg19 2 225695297 225695297 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DOCK10 NM_014689 exon27 c.2998delT p.S1000fs . . 163.0 11.0 182.0 0.0 . 308 . . Atlas-INDEL PLCG1 5335 hgsc.bcm.edu hg19 20 39798114 39798114 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLCG1 NM_182811 exon23 c.2597delG p.S866fs . . 174.0 11.0 176.0 0.0 . 111 . . Atlas-INDEL IL31RA 133396 hgsc.bcm.edu hg19 5 55168109 55168109 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IL31RA NM_001242637 exon4 c.283delG p.E95fs . . 164.0 11.0 106.0 0.0 . 84 . . Atlas-INDEL SLC6A14 11254 hgsc.bcm.edu hg19 X 115573885 115573885 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC6A14 NM_007231 exon4 c.376delA p.I126fs . . 121.0 10.0 104.0 0.0 . 56 . . Atlas-INDEL ZNF334 55713 hgsc.bcm.edu hg19 20 45131438 45131438 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF334 NM_018102 exon5 c.541delT p.Y181fs . . 197.0 12.0 185.0 0.0 . 101 . . Atlas-INDEL SPON2 10417 hgsc.bcm.edu hg19 4 1165676 1165676 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SPON2 NM_012445 exon2 c.185delT p.L62fs . . 159.0 10.0 95.0 0.0 . 22 . . Atlas-INDEL ZNF292 23036 hgsc.bcm.edu hg19 6 87970974 87970974 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF292 NM_015021 exon8 c.7626delT p.N2542fs . . 100.0 11.0 76.0 0.0 . 479 . . Atlas-INDEL MAML1 9794 hgsc.bcm.edu hg19 5 179193024 179193024 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MAML1 NM_014757 exon2 c.1012delT p.S338fs . . 144.0 10.0 69.0 0.0 . 118 . . Atlas-INDEL NASP 4678 hgsc.bcm.edu hg19 1 46073055 46073055 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NASP NM_002482 exon6 c.471delC p.A157fs . . 238.0 17.0 138.0 0.0 . 77 . . Atlas-INDEL COL5A1 1289 hgsc.bcm.edu hg19 9 137593113 137593113 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COL5A1 NM_000093 exon4 c.587delA p.H196fs . . 192.0 13.0 178.0 0.0 . 323 . . Atlas-INDEL PPA1 5464 hgsc.bcm.edu hg19 10 71977640 71977640 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PPA1 NM_021129 exon4 c.226delG p.G76fs . . 148.0 11.0 137.0 0.0 . 24 . . Atlas-INDEL CCDC109B 55013 hgsc.bcm.edu hg19 4 110605773 110605773 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCDC109B NM_017918 exon6 c.786delC p.V262fs . . 107.0 10.0 156.0 0.0 . 47 . . Atlas-INDEL TARS2 80222 hgsc.bcm.edu hg19 1 150469064 150469064 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TARS2 NM_025150 exon8 c.880delA p.R294fs . . 216.0 14.0 121.0 0.0 . 91 . . Atlas-INDEL TPP2 7174 hgsc.bcm.edu hg19 13 103326668 103326668 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TPP2 NM_003291 exon27 c.3367delG p.A1123fs . . 162.0 10.0 91.0 0.0 . 124 . . Atlas-INDEL MSI1 4440 hgsc.bcm.edu hg19 12 120784098 120784098 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MSI1 NM_002442 exon13 c.888delT p.P296fs . . 151.0 11.0 64.0 0.0 . 40 . . Atlas-INDEL TCP11 6954 hgsc.bcm.edu hg19 6 35096919 35096919 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TCP11 NM_001093728 exon4 c.317delG p.W106fs . . 181.0 12.0 135.0 0.0 . 94 . . Atlas-INDEL SLC43A3 29015 hgsc.bcm.edu hg19 11 57193097 57193097 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC43A3 NM_014096 exon4 c.232delT p.S78fs . . 155.0 13.0 134.0 0.0 . 54 . . Atlas-INDEL TRANK1 9881 hgsc.bcm.edu hg19 3 36897154 36897154 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRANK1 NM_014831 exon12 c.3928delC p.L1310X . . 170.0 12.0 118.0 0.0 . 398 . . Atlas-INDEL EIF4G2 1982 hgsc.bcm.edu hg19 11 10822385 10822385 + Splice_Site DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EIF4G2 NM_001172705 exon17 c.1540-2T>- . . . 157.0 10.0 83.0 0.0 . 89 . . Atlas-INDEL ADNP 23394 hgsc.bcm.edu hg19 20 49508560 49508560 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ADNP NM_015339 exon5 c.2692delG p.E898fs . . 144.0 10.0 109.0 0.0 . 106 . . Atlas-INDEL KIAA1609 57707 hgsc.bcm.edu hg19 16 84520325 84520325 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIAA1609 NM_020947 exon5 c.871delC p.P291fs . . 156.0 10.0 151.0 0.0 . 39 . . Atlas-INDEL IKBIP 121457 hgsc.bcm.edu hg19 12 99020228 99020228 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IKBIP NM_153687 exon3 c.615delG p.L205fs . . 165.0 10.0 97.0 0.0 . 46 . . Atlas-INDEL ZFHX4 79776 hgsc.bcm.edu hg19 8 77775609 77775609 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZFHX4 NM_024721 exon11 c.9658delG p.E3220fs . . 246.0 15.0 67.0 0.0 . 878 . . Atlas-INDEL CDCA3 83461 hgsc.bcm.edu hg19 12 6958537 6958537 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDCA3 NM_031299 exon5 c.602delT p.L201fs . . 200.0 13.0 247.0 0.0 . 17 . . Atlas-INDEL HELLS 3070 hgsc.bcm.edu hg19 10 96336531 96336531 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HELLS NM_018063 exon10 c.1000delG p.E334fs . . 184.0 12.0 157.0 0.0 . 63 . . Atlas-INDEL GLO1 2739 hgsc.bcm.edu hg19 6 38654690 38654690 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GLO1 NM_006708 exon2 c.146delA p.Y49fs . . 333.0 20.0 218.0 0.0 . 12 . . Atlas-INDEL WAC 51322 hgsc.bcm.edu hg19 10 28908473 28908473 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WAC NM_016628 exon14 c.1881delA p.L627fs . . 163.0 10.0 133.0 0.0 . 77 . . Atlas-INDEL SLITRK5 26050 hgsc.bcm.edu hg19 13 88328344 88328344 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLITRK5 NM_015567 exon2 c.700delG p.E234fs . . 189.0 12.0 98.0 0.0 . 192 . . Atlas-INDEL CXorf30 645090 hgsc.bcm.edu hg19 X 36379541 36379541 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CXorf30 NM_001098843 exon16 c.1285delG p.E429fs . . 162.0 10.0 134.0 0.0 . 76 . . Atlas-INDEL GUSB 2990 hgsc.bcm.edu hg19 7 65429409 65429409 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GUSB NM_000181 exon11 c.1691delG p.S564fs . . 155.0 11.0 122.0 0.0 . 52 . . Atlas-INDEL FANCI 55215 hgsc.bcm.edu hg19 15 89828374 89828374 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FANCI NM_001113378 exon18 c.1745delC p.T582fs . . 161.0 10.0 135.0 0.0 . 129 . . Atlas-INDEL TSTD2 158427 hgsc.bcm.edu hg19 9 100389705 100389705 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TSTD2 NM_139246 exon2 c.141delG p.K47fs . . 188.0 13.0 163.0 0.0 . 42 . . Atlas-INDEL NPS 594857 hgsc.bcm.edu hg19 10 129350732 129350732 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NPS NM_001030013 exon3 c.98delG p.G33fs . . 118.0 10.0 128.0 0.0 . 14 . . Atlas-INDEL PARG 8505 hgsc.bcm.edu hg19 10 51363013 51363013 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PARG NM_003631 exon3 c.1060delA p.R354fs . . 11.0 10.0 5.0 0.0 . 46 . . Atlas-INDEL PRDM2 7799 hgsc.bcm.edu hg19 1 14108857 14108857 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRDM2 NM_015866 exon8 c.4566delT p.I1522fs . . 125.0 10.0 85.0 0.0 . 147 . . Atlas-INDEL MTRF1L 54516 hgsc.bcm.edu hg19 6 153323592 153323592 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MTRF1L NM_019041 exon1 c.230delA p.E77fs . . 227.0 14.0 190.0 0.0 . 21 . . Atlas-INDEL CYP39A1 51302 hgsc.bcm.edu hg19 6 46604172 46604172 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CYP39A1 NM_016593 exon5 c.687delC p.N229fs . . 144.0 11.0 94.0 0.0 . 41 . . Atlas-INDEL PYROXD1 79912 hgsc.bcm.edu hg19 12 21620538 21620538 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PYROXD1 NM_024854 exon11 c.1239delA p.K413fs . . 209.0 13.0 243.0 0.0 . 38 . . Atlas-INDEL SCIN 85477 hgsc.bcm.edu hg19 7 12664770 12664770 + Splice_Site DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SCIN NM_001112706 exon6 c.892+2A>- . . . 146.0 10.0 115.0 0.0 . 105 . . Atlas-INDEL MYCL1 4610 hgsc.bcm.edu hg19 1 40366859 40366859 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYCL1 NM_005376 exon2 c.339delC p.G113fs . . 302.0 19.0 176.0 0.0 . 36 . . Atlas-INDEL IRAK4 51135 hgsc.bcm.edu hg19 12 44180517 44180517 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IRAK4 NM_016123 exon12 c.1381delT p.X461K . . 145.0 10.0 127.0 0.0 . 77 . . Atlas-INDEL EIF4B 1975 hgsc.bcm.edu hg19 12 53427592 53427592 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EIF4B NM_001417 exon9 c.981delT p.G327fs . . 389.0 26.0 328.0 0.0 . 38 . . Atlas-INDEL MYO7A 4647 hgsc.bcm.edu hg19 11 76917218 76917218 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYO7A NM_000260 exon41 c.5712delC p.H1904fs . . 127.0 10.0 88.0 0.0 . 164 . . Atlas-INDEL BAIAP2 10458 hgsc.bcm.edu hg19 17 79089623 79089623 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BAIAP2 NM_001144888 exon14 c.1588delG p.A530fs . . 131.0 11.0 83.0 0.0 . 74 . . Atlas-INDEL FLNB 2317 hgsc.bcm.edu hg19 3 58107010 58107010 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FLNB NM_001457 exon20 c.2905delA p.R969fs . . 166.0 10.0 134.0 0.0 . 430 . . Atlas-INDEL KDM4C 23081 hgsc.bcm.edu hg19 9 6805725 6805725 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KDM4C NM_001146696 exon3 c.336delG p.Q112fs . . 199.0 12.0 193.0 0.0 . 186 . . Atlas-INDEL PRKD1 5587 hgsc.bcm.edu hg19 14 30095706 30095706 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRKD1 NM_002742 exon12 c.1783delG p.G595fs . . 193.0 12.0 193.0 0.0 . 316 . . Atlas-INDEL JAG2 3714 hgsc.bcm.edu hg19 14 105618518 105618518 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . JAG2 NM_145159 exon6 c.900delC p.G300fs . . 220.0 14.0 196.0 0.0 . 69 . . Atlas-INDEL TBX18 9096 hgsc.bcm.edu hg19 6 85446613 85446613 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TBX18 NM_001080508 exon8 c.1615delA p.K539fs . . 191.0 12.0 127.0 0.0 . 131 . . Atlas-INDEL FHAD1 114827 hgsc.bcm.edu hg19 1 15692403 15692403 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FHAD1 NM_052929 exon23 c.3061delG p.A1021fs . . 216.0 13.0 89.0 0.0 . 78 . . Atlas-INDEL HSPA1B 3304 hgsc.bcm.edu hg19 6 31796253 31796253 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HSPA1B NM_005346 exon1 c.525delG p.E175fs . . 153.0 10.0 117.0 0.0 . 5 . . Atlas-INDEL CASC4 113201 hgsc.bcm.edu hg19 15 44673029 44673029 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CASC4 NM_138423 exon8 c.926delA p.N309fs . . 156.0 13.0 130.0 0.0 . 34 . . Atlas-INDEL DLK1 8788 hgsc.bcm.edu hg19 14 101200644 101200644 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DLK1 NM_003836 exon5 c.562delA p.I188fs . . 211.0 13.0 190.0 0.0 . 57 . . Atlas-INDEL XPO1 7514 hgsc.bcm.edu hg19 2 61719275 61719275 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . XPO1 NM_003400 exon16 c.1783delT p.C595fs . . 146.0 10.0 138.0 0.0 . 108 . . Atlas-INDEL FAM83B 222584 hgsc.bcm.edu hg19 6 54735393 54735393 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM83B NM_001010872 exon2 c.348delA p.L116fs . . 184.0 12.0 124.0 0.0 . 186 . . Atlas-INDEL TIAM1 7074 hgsc.bcm.edu hg19 21 32519299 32519299 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TIAM1 NM_003253 exon21 c.3390delA p.G1130fs . . 155.0 10.0 194.0 0.0 . 522 . . Atlas-INDEL KCNG3 170850 hgsc.bcm.edu hg19 2 42671493 42671493 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KCNG3 NM_133329 exon2 c.893delG p.W298fs . . 173.0 12.0 116.0 0.0 . 19 . . Atlas-INDEL AGXT2 64902 hgsc.bcm.edu hg19 5 35025928 35025928 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AGXT2 NM_031900 exon9 c.904delT p.F302fs . . 139.0 12.0 89.0 0.0 . 89 . . Atlas-INDEL ELMO1 9844 hgsc.bcm.edu hg19 7 37252948 37252948 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ELMO1 NM_014800 exon12 c.947delA p.Q316fs . . 232.0 15.0 142.0 0.0 . 141 . . Atlas-INDEL NCAPH2 29781 hgsc.bcm.edu hg19 22 50957703 50957703 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NCAPH2 NM_152299 exon9 c.814delG p.A272fs . . 187.0 12.0 175.0 0.0 . 69 . . Atlas-INDEL RC3H2 54542 hgsc.bcm.edu hg19 9 125652757 125652757 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RC3H2 NM_018835 exon4 c.418delT p.C140fs . . 173.0 11.0 137.0 0.0 . 150 . . Atlas-INDEL ARHGAP33 115703 hgsc.bcm.edu hg19 19 36278689 36278689 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARHGAP33 NM_052948 exon21 c.2738delG p.G913fs . . 157.0 10.0 136.0 0.0 . 102 . . Atlas-INDEL POTEF 728378 hgsc.bcm.edu hg19 2 130865619 130865619 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . POTEF NM_001099771 exon8 c.1090delC p.Q364fs . . 247.0 17.0 238.0 0.0 . 140 . . Atlas-INDEL VAPB 9217 hgsc.bcm.edu hg19 20 57019177 57019177 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VAPB NM_004738 exon6 c.617delG p.S206fs . . 174.0 12.0 159.0 0.0 . 21 . . Atlas-INDEL COL9A2 1298 hgsc.bcm.edu hg19 1 40776921 40776921 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COL9A2 NM_001852 exon11 c.558delA p.P186fs . . 147.0 11.0 77.0 0.0 . 63 . . Atlas-INDEL CNTNAP4 85445 hgsc.bcm.edu hg19 16 76486452 76486452 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CNTNAP4 NM_138994 exon7 c.899delC p.T300fs . . 127.0 10.0 138.0 0.0 . 600 . . Atlas-INDEL ZFAND5 7763 hgsc.bcm.edu hg19 9 74974352 74974352 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZFAND5 NM_001102420 exon5 c.350delC p.T117fs . . 116.0 10.0 105.0 0.0 . 14 . . Atlas-INDEL ZNF597 146434 hgsc.bcm.edu hg19 16 3486565 3486565 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF597 NM_152457 exon4 c.1135delG p.A379fs . . 163.0 10.0 135.0 0.0 . 41 . . Atlas-INDEL SFMBT2 57713 hgsc.bcm.edu hg19 10 7214583 7214583 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SFMBT2 NM_001029880 exon18 c.2026delA p.I676fs . . 217.0 17.0 203.0 0.0 . 209 . . Atlas-INDEL CREB3L4 148327 hgsc.bcm.edu hg19 1 153941909 153941909 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CREB3L4 NM_001255978 exon4 c.520delG p.A174fs . . 165.0 10.0 90.0 0.0 . 36 . . Atlas-INDEL EEA1 8411 hgsc.bcm.edu hg19 12 93251072 93251072 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EEA1 NM_003566 exon5 c.346delT p.Y116fs . . 276.0 20.0 209.0 0.0 . 104 . . Atlas-INDEL TRMT10B 158234 hgsc.bcm.edu hg19 9 37762657 37762657 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_144964 exon3 c.269delG p.R90fs . . 158.0 10.0 190.0 0.0 . . . . Atlas-INDEL PALM3 342979 hgsc.bcm.edu hg19 19 14164636 14164636 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PALM3 NM_001145028 exon6 c.1804delT p.L602fs . . 140.0 11.0 95.0 0.0 . 26 . . Atlas-INDEL CTXN2 399697 hgsc.bcm.edu hg19 15 48493577 48493577 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CTXN2 NM_001145668 exon2 c.79delC p.Q27fs . . 328.0 20.0 278.0 0.0 . 8 . . Atlas-INDEL C1orf172 126695 hgsc.bcm.edu hg19 1 27278443 27278443 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C1orf172 NM_152365 exon2 c.430delA p.S144fs . . 351.0 22.0 181.0 0.0 . 38 . . Atlas-INDEL TLR10 81793 hgsc.bcm.edu hg19 4 38777029 38777029 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TLR10 NM_030956 exon4 c.184delC p.Q62fs . . 200.0 13.0 166.0 0.0 . 87 . . Atlas-INDEL SLC30A3 7781 hgsc.bcm.edu hg19 2 27480186 27480186 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC30A3 NM_003459 exon5 c.614delA p.H205fs . . 163.0 11.0 136.0 0.0 . 39 . . Atlas-INDEL ARID1A 8289 hgsc.bcm.edu hg19 1 27087916 27087916 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARID1A NM_006015 exon6 c.2202delC p.D734fs . . 505.0 34.0 326.0 0.0 . 842 . . Atlas-Indel,Pindel COL9A3 1299 hgsc.bcm.edu hg19 20 61450582 61450582 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COL9A3 NM_001853 exon4 c.191delA p.K64fs . . 199.0 13.0 180.0 0.0 . 70 . . Atlas-INDEL WDR35 57539 hgsc.bcm.edu hg19 2 20188946 20188946 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDR35 NM_020779 exon2 c.123delG p.L41fs . . 160.0 10.0 137.0 0.0 . 92 . . Atlas-INDEL BAZ2B 29994 hgsc.bcm.edu hg19 2 160182380 160182380 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BAZ2B NM_013450 exon35 c.5994delG p.K1998fs . . 173.0 13.0 133.0 0.0 . 196 . . Atlas-INDEL KCNIP1 30820 hgsc.bcm.edu hg19 5 170139893 170139893 + Splice_Site DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KCNIP1 NM_001034837 exon2 c.94+2A>- . . . 174.0 12.0 107.0 0.0 . 66 . . Atlas-INDEL CYC1 1537 hgsc.bcm.edu hg19 8 145150814 145150814 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CYC1 NM_001916 exon2 c.207delA p.A69fs . . 239.0 15.0 62.0 0.0 . 34 . . Atlas-INDEL C17orf47 284083 hgsc.bcm.edu hg19 17 56620577 56620577 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C17orf47 NM_001038704 exon1 c.972delA p.P324fs . . 178.0 11.0 163.0 0.0 . 59 . . Atlas-INDEL CC2D1A 54862 hgsc.bcm.edu hg19 19 14031386 14031386 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CC2D1A NM_017721 exon13 c.1372delG p.A458fs . . 193.0 13.0 183.0 0.0 . 67 . . Atlas-INDEL ACVR1 90 hgsc.bcm.edu hg19 2 158622477 158622477 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACVR1 NM_001105 exon8 c.1023delT p.N341fs . . 160.0 10.0 141.0 0.0 . 52 . . Atlas-INDEL C11orf54 28970 hgsc.bcm.edu hg19 11 93492928 93492928 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C11orf54 NM_014039 exon7 c.527delG p.C176fs . . 165.0 11.0 102.0 0.0 . 23 . . Atlas-INDEL TACSTD2 4070 hgsc.bcm.edu hg19 1 59041883 59041883 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TACSTD2 NM_002353 exon1 c.947delA p.E316fs . . 121.0 10.0 64.0 0.0 . 6 . . Atlas-INDEL ROBO1 6091 hgsc.bcm.edu hg19 3 78710322 78710322 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ROBO1 NM_002941 exon16 c.2179delG p.E727fs . . 165.0 10.0 127.0 0.0 . 833 . . Atlas-INDEL FAM21A 387680 hgsc.bcm.edu hg19 10 51829353 51829353 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM21A NM_001005751 exon3 c.172delA p.T58fs . . 191.0 12.0 187.0 0.0 . 32 . . Atlas-INDEL ABL2 27 hgsc.bcm.edu hg19 1 179086622 179086622 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABL2 NM_007314 exon8 c.1254delA p.G418fs . . 182.0 12.0 94.0 0.0 . 307 . . Atlas-INDEL UTP20 27340 hgsc.bcm.edu hg19 12 101746865 101746865 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UTP20 NM_014503 exon40 c.5064delC p.H1688fs . . 186.0 13.0 141.0 0.0 . 222 . . Atlas-INDEL SNRNP48 154007 hgsc.bcm.edu hg19 6 7594353 7594353 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SNRNP48 NM_152551 exon3 c.291delG p.E97fs . . 176.0 11.0 98.0 0.0 . 32 . . Atlas-INDEL FBXL13 222235 hgsc.bcm.edu hg19 7 102665640 102665640 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FBXL13 NM_145032 exon6 c.366delT p.N122fs . . 163.0 11.0 103.0 0.0 . 65 . . Atlas-INDEL PDCD11 22984 hgsc.bcm.edu hg19 10 105205170 105205170 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PDCD11 NM_014976 exon36 c.5479delG p.A1827fs . . 175.0 12.0 174.0 0.0 . 160 . . Atlas-INDEL RPS3A 6189 hgsc.bcm.edu hg19 4 152025347 152025347 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RPS3A NM_001006 exon5 c.581delG p.G194fs . . 159.0 10.0 153.0 0.0 . 11 . . Atlas-INDEL CTBP1 1487 hgsc.bcm.edu hg19 4 1206096 1206096 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CTBP1 NM_001328 exon9 c.1256delA p.H419fs . . 180.0 11.0 177.0 0.0 . 30 . . Atlas-INDEL RASAL1 8437 hgsc.bcm.edu hg19 12 113553545 113553545 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RASAL1 NM_004658 exon11 c.899delA p.D300fs . . 194.0 12.0 119.0 0.0 . 89 . . Atlas-INDEL OR4X1 390113 hgsc.bcm.edu hg19 11 48286313 48286313 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR4X1 NM_001004726 exon1 c.900delT p.I300fs . . 152.0 11.0 114.0 0.0 . 75 . . Atlas-INDEL TTN 7273 hgsc.bcm.edu hg19 2 179429759 179429759 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TTN NM_001267550 exon326 c.81101delT p.I27034fs . . 176.0 11.0 163.0 0.0 . 18412 . . Atlas-INDEL HECTD1 25831 hgsc.bcm.edu hg19 14 31617960 31617960 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HECTD1 NM_015382 exon15 c.2464delC p.L822X . . 178.0 11.0 189.0 0.0 . 159 . . Atlas-INDEL BBX 56987 hgsc.bcm.edu hg19 3 107497314 107497314 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BBX NM_001142568 exon13 c.2150delG p.R717fs . . 275.0 20.0 187.0 0.0 . 156 . . Atlas-INDEL PRSS57 400668 hgsc.bcm.edu hg19 19 687117 687117 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRSS57 NM_214710 exon4 c.454delA p.T152fs . . 175.0 11.0 155.0 0.0 . 18 . . Atlas-INDEL TLR1 7096 hgsc.bcm.edu hg19 4 38800352 38800352 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TLR1 NM_003263 exon4 c.102delC p.N34fs . . 151.0 11.0 127.0 0.0 . 70 . . Atlas-INDEL PPOX 5498 hgsc.bcm.edu hg19 1 161140706 161140706 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PPOX NM_001122764 exon12 c.1257delT p.I419fs . . 120.0 10.0 87.0 0.0 . 34 . . Atlas-INDEL LYPD1 116372 hgsc.bcm.edu hg19 2 133403775 133403775 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LYPD1 NM_144586 exon3 c.270delA p.P90fs . . 156.0 10.0 117.0 0.0 . 11 . . Atlas-INDEL TCEB3 6924 hgsc.bcm.edu hg19 1 24077422 24077422 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TCEB3 NM_003198 exon4 c.404delA p.E135fs . . 128.0 10.0 70.0 0.0 . 61 . . Atlas-INDEL C3orf30 152405 hgsc.bcm.edu hg19 3 118867142 118867142 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C3orf30 NM_152539 exon2 c.1513delG p.E505fs . . 279.0 18.0 170.0 0.0 . 64 . . Atlas-INDEL AQR 9716 hgsc.bcm.edu hg19 15 35174733 35174733 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AQR NM_014691 exon27 c.3136delC p.R1046fs . . 149.0 10.0 161.0 0.0 . 139 . . Atlas-INDEL PKD2L1 9033 hgsc.bcm.edu hg19 10 102054379 102054379 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PKD2L1 NM_016112 exon9 c.1573delG p.D525fs . . 157.0 10.0 128.0 0.0 . 103 . . Atlas-INDEL ZNF678 339500 hgsc.bcm.edu hg19 1 227843509 227843509 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF678 NM_178549 exon4 c.1722delT p.C574X . . 189.0 12.0 120.0 0.0 . 137 . . Atlas-INDEL ALPK2 115701 hgsc.bcm.edu hg19 18 56246440 56246440 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ALPK2 NM_052947 exon4 c.1569delG p.K523fs . . 124.0 10.0 105.0 0.0 . 487 . . Atlas-INDEL SORBS2 8470 hgsc.bcm.edu hg19 4 186583322 186583322 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SORBS2 NM_001145673 exon6 c.568delT p.S190fs . . 225.0 15.0 209.0 0.0 . 300 . . Atlas-INDEL VIL1 7429 hgsc.bcm.edu hg19 2 219292980 219292980 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VIL1 NM_007127 exon6 c.486delA p.R162fs . . 186.0 12.0 213.0 0.0 . 65 . . Atlas-INDEL VCAM1 7412 hgsc.bcm.edu hg19 1 101197977 101197977 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VCAM1 NM_001078 exon7 c.1528delG p.A510fs . . 101.0 11.0 57.0 0.0 . 111 . . Atlas-INDEL RPL18A 6142 hgsc.bcm.edu hg19 19 17973742 17973742 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RPL18A NM_000980 exon4 c.343delG p.A115fs . . 155.0 10.0 112.0 0.0 . 15 . . Atlas-INDEL ABCA5 23461 hgsc.bcm.edu hg19 17 67282042 67282042 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABCA5 NM_018672 exon16 c.2270delC p.S757X . . 178.0 13.0 93.0 0.0 . 162 . . Atlas-INDEL ITGA6 3655 hgsc.bcm.edu hg19 2 173355995 173355995 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ITGA6 NM_000210 exon22 c.2824delC p.R942fs . . 183.0 11.0 152.0 0.0 . 171 . . Atlas-INDEL DSEL 92126 hgsc.bcm.edu hg19 18 65178866 65178866 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DSEL NM_032160 exon2 c.3011delA p.Y1004fs . . 147.0 13.0 135.0 0.0 . 196 . . Atlas-INDEL KIAA1429 25962 hgsc.bcm.edu hg19 8 95531264 95531264 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIAA1429 NM_015496 exon9 c.2463delT p.N821fs . . 160.0 10.0 51.0 0.0 . 176 . . Atlas-INDEL AMFR 267 hgsc.bcm.edu hg19 16 56441911 56441911 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AMFR NM_001144 exon4 c.632delA p.H211fs . . 196.0 12.0 196.0 0.0 . 40 . . Atlas-INDEL BET3L 100128327 hgsc.bcm.edu hg19 6 116818135 116818135 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BET3L NM_001139444 exon5 c.529delT p.Y177fs . . 207.0 14.0 145.0 0.0 . 18 . . Atlas-INDEL BDP1 55814 hgsc.bcm.edu hg19 5 70806693 70806693 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BDP1 NM_018429 exon17 c.3773delG p.G1258fs . . 175.0 11.0 71.0 0.0 . 204 . . Atlas-INDEL ZRANB1 54764 hgsc.bcm.edu hg19 10 126670335 126670335 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZRANB1 NM_017580 exon6 c.1484delA p.H495fs . . 179.0 11.0 145.0 0.0 . 60 . . Atlas-INDEL AOX1 316 hgsc.bcm.edu hg19 2 201485931 201485931 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AOX1 NM_001159 exon18 c.1962delC p.C654fs . . 186.0 12.0 169.0 0.0 . 152 . . Atlas-INDEL ADCY10 55811 hgsc.bcm.edu hg19 1 167780125 167780125 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ADCY10 NM_018417 exon32 c.4509delT p.N1503fs . . 216.0 13.0 141.0 0.0 . 175 . . Atlas-INDEL LRP12 29967 hgsc.bcm.edu hg19 8 105503191 105503191 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRP12 NM_013437 exon7 c.2291delT p.V764fs . . 182.0 11.0 24.0 0.0 . 124 . . Atlas-INDEL MIR205HG 642587 hgsc.bcm.edu hg19 1 209602687 209602687 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_001104548 exon2 c.44delG p.G15fs . . 162.0 10.0 68.0 0.0 . . . . Atlas-INDEL CAMSAP2 23271 hgsc.bcm.edu hg19 1 200818368 200818368 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_203459 exon11 c.2470delC p.Q824fs . . 197.0 12.0 100.0 0.0 . . . . Atlas-INDEL P2RY12 64805 hgsc.bcm.edu hg19 3 151055960 151055960 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . P2RY12 NM_022788 exon3 c.675delT p.G225fs . . 166.0 13.0 109.0 0.0 . 36 . . Atlas-INDEL GABRA1 2554 hgsc.bcm.edu hg19 5 161277851 161277851 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GABRA1 NM_001127644 exon2 c.34delT p.W12fs . . 235.0 15.0 139.0 0.0 . 132 . . Atlas-INDEL AIM1L 55057 hgsc.bcm.edu hg19 1 26670276 26670276 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AIM1L NM_001039775 exon2 c.2874delA p.P958fs . . 154.0 10.0 105.0 0.0 . 98 . . Atlas-INDEL NUP85 79902 hgsc.bcm.edu hg19 17 73221299 73221299 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NUP85 NM_024844 exon8 c.698delT p.M233fs . . 150.0 10.0 93.0 0.0 . 44 . . Atlas-INDEL POLB 5423 hgsc.bcm.edu hg19 8 42213041 42213041 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . POLB NM_002690 exon7 c.377delG p.R126fs . . 158.0 10.0 264.0 0.0 . 60 . . Atlas-INDEL POLR3A 11128 hgsc.bcm.edu hg19 10 79745906 79745906 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . POLR3A NM_007055 exon22 c.2914delT p.F972fs . . 160.0 10.0 97.0 0.0 . 104 . . Atlas-INDEL TRAPPC8 22878 hgsc.bcm.edu hg19 18 29429604 29429604 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRAPPC8 NM_014939 exon25 c.3661delC p.Q1221fs . . 159.0 10.0 146.0 0.0 . 126 . . Atlas-INDEL OR6C68 403284 hgsc.bcm.edu hg19 12 55886489 55886489 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR6C68 NM_001005519 exon1 c.327delA p.E109fs . . 153.0 11.0 145.0 0.0 . 36 . . Atlas-INDEL ASIC2 40 hgsc.bcm.edu hg19 17 31439005 31439005 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,2 . NM_183377 exon2 c.790delA p.T264fs . . 153.0 10.0 146.0 0.0 . . . . Atlas-INDEL ITGB2 3689 hgsc.bcm.edu hg19 21 46309403 46309403 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ITGB2 NM_000211 exon13 c.1666delC p.L556fs . . 166.0 10.0 134.0 0.0 . 107 . . Atlas-INDEL DDX4 54514 hgsc.bcm.edu hg19 5 55110940 55110940 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DDX4 NM_024415 exon20 c.1926delC p.S642fs . . 466.0 29.0 295.0 0.0 . 194 . . Atlas-INDEL ANKRD18B 441459 hgsc.bcm.edu hg19 9 33536901 33536901 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKRD18B NM_001244752 exon6 c.765delT p.H255fs . . 199.0 13.0 167.0 0.0 . 46 . . Atlas-INDEL ANKAR 150709 hgsc.bcm.edu hg19 2 190569839 190569839 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKAR NM_144708 exon8 c.1798delG p.E600fs . . 152.0 10.0 144.0 0.0 . 184 . . Atlas-INDEL IFNG 3458 hgsc.bcm.edu hg19 12 68551987 68551987 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IFNG NM_000619 exon2 c.168delG p.L56fs . . 76.0 11.0 106.0 0.0 . 38 . . Atlas-INDEL SLIT3 6586 hgsc.bcm.edu hg19 5 168127640 168127640 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLIT3 NM_001271946 exon27 c.2911delT p.C971fs . . 273.0 18.0 140.0 0.0 . 224 . . Atlas-INDEL CRELD2 79174 hgsc.bcm.edu hg19 22 50319089 50319089 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CRELD2 NM_001135101 exon10 c.1039delG p.E347fs . . 137.0 10.0 123.0 0.0 . 57 . . Atlas-INDEL MRPS18B 28973 hgsc.bcm.edu hg19 6 30587360 30587360 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MRPS18B NM_014046 exon2 c.168delG p.W56X . . 151.0 10.0 102.0 0.0 . 22 . . Atlas-INDEL RYR2 6262 hgsc.bcm.edu hg19 1 237957192 237957192 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RYR2 NM_001035 exon95 c.13807delG p.E4603fs . . 200.0 12.0 114.0 0.0 . 1273 . . Atlas-INDEL TOX4 9878 hgsc.bcm.edu hg19 14 21957371 21957371 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TOX4 NM_014828 exon5 c.618delG p.G206fs . . 120.0 11.0 111.0 0.0 . 50 . . Atlas-INDEL NDST3 9348 hgsc.bcm.edu hg19 4 118975821 118975821 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NDST3 NM_004784 exon2 c.755delC p.A252fs . . 180.0 11.0 173.0 0.0 . 107 . . Atlas-INDEL C4orf45 152940 hgsc.bcm.edu hg19 4 159894380 159894380 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C4orf45 NM_152543 exon2 c.149delC p.T50fs . . 134.0 10.0 136.0 0.0 . 8 . . Atlas-INDEL TREX1 11277 hgsc.bcm.edu hg19 3 48508447 48508447 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TREX1 NM_016381 exon1 c.557delT p.F186fs . . 152.0 10.0 111.0 0.0 . 17 . . Atlas-INDEL OR10A3 26496 hgsc.bcm.edu hg19 11 7960747 7960747 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR10A3 NM_001003745 exon1 c.322delG p.G108fs . . 161.0 13.0 87.0 0.0 . 54 . . Atlas-INDEL C17orf85 55421 hgsc.bcm.edu hg19 17 3716454 3716454 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C17orf85 NM_001114118 exon13 c.1748delC p.A583fs . . 151.0 13.0 206.0 0.0 . 66 . . Atlas-INDEL SYVN1 84447 hgsc.bcm.edu hg19 11 64897763 64897763 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SYVN1 NM_032431 exon12 c.1195delA p.S399fs . . 153.0 10.0 107.0 0.0 . 55 . . Atlas-INDEL HTATIP2 10553 hgsc.bcm.edu hg19 11 20398242 20398242 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 HTATIP2_ENST00000419348,NS,carcinoma,0,3 HTATIP2 NM_001098520 exon4 c.521delA p.N174fs . . 167.0 13.0 127.0 0.0 . 30 . . Atlas-INDEL SALL4 57167 hgsc.bcm.edu hg19 20 50408744 50408744 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SALL4 NM_020436 exon2 c.279delT p.N93fs . . 103.0 10.0 73.0 0.0 . 168 . . Atlas-INDEL DNAH14 127602 hgsc.bcm.edu hg19 1 225230572 225230572 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DNAH14 NM_001373 exon13 c.1523delG p.R508fs . . 314.0 20.0 154.0 0.0 . 300 . . Atlas-INDEL RPS4Y2 140032 hgsc.bcm.edu hg19 Y 22921883 22921883 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RPS4Y2 NM_001039567 exon3 c.210delC p.L70fs . . 166.0 10.0 143.0 0.0 . 3 . . Atlas-INDEL WDR64 128025 hgsc.bcm.edu hg19 1 241936138 241936138 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDR64 NM_144625 exon19 c.2304delC p.D768fs . . 164.0 12.0 110.0 0.0 . 234 . . Atlas-INDEL COL3A1 1281 hgsc.bcm.edu hg19 2 189852856 189852856 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . COL3A1 NM_000090 exon6 c.577delT p.S193fs . . 321.0 20.0 276.0 0.0 . 292 . . Atlas-INDEL ARHGEF5 7984 hgsc.bcm.edu hg19 7 144075858 144075858 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARHGEF5 NM_005435 exon14 c.4534delT p.S1512fs . . 227.0 14.0 158.0 0.0 . 73 . . Atlas-INDEL KCNQ5 56479 hgsc.bcm.edu hg19 6 73787525 73787525 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KCNQ5 NM_001160132 exon5 c.832delA p.I278fs . . 183.0 11.0 114.0 0.0 . 153 . . Atlas-INDEL CAV2 858 hgsc.bcm.edu hg19 7 116140387 116140387 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CAV2 NM_001233 exon2 c.223delG p.A75fs . . 157.0 11.0 101.0 0.0 . 10 . . Atlas-INDEL HOXA9 3205 hgsc.bcm.edu hg19 7 27204507 27204507 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HOXA9 NM_152739 exon1 c.571delA p.I191fs . . 157.0 11.0 88.0 0.0 . 20 . . Atlas-INDEL OR4A5 81318 hgsc.bcm.edu hg19 11 51411652 51411652 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR4A5 NM_001005272 exon1 c.745delG p.V249fs . . 143.0 13.0 86.0 0.0 . 116 . . Atlas-INDEL PMS1 5378 hgsc.bcm.edu hg19 2 190719511 190719511 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PMS1 NM_001128144 exon9 c.1512delT p.L504fs . . 162.0 11.0 145.0 0.0 . 78 . . Atlas-INDEL TOP3A 7156 hgsc.bcm.edu hg19 17 18217965 18217965 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TOP3A NM_004618 exon1 c.129delC p.N43fs . . 156.0 13.0 132.0 0.0 . 85 . . Atlas-INDEL UGT1A1 54658 hgsc.bcm.edu hg19 2 234668947 234668947 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UGT1A1 NM_000463 exon1 c.13delT p.S5fs . . 159.0 10.0 135.0 0.0 . 81 . . Atlas-INDEL ERG 2078 hgsc.bcm.edu hg19 21 39755389 39755389 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ERG NM_001136154 exon12 c.1398delT p.G466fs . . 156.0 14.0 145.0 0.0 . 78 . . Atlas-INDEL CCDC47 57003 hgsc.bcm.edu hg19 17 61831827 61831827 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCDC47 NM_020198 exon9 c.1001delC p.S334X . . 326.0 20.0 243.0 0.0 . 34 . . Atlas-INDEL DOK4 55715 hgsc.bcm.edu hg19 16 57507902 57507902 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DOK4 NM_018110 exon7 c.650delA p.E217fs . . 159.0 11.0 155.0 0.0 . 19 . . Atlas-INDEL PRR16 51334 hgsc.bcm.edu hg19 5 120022115 120022115 + Frame_Shift_Del DEL A A - rs35167981 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRR16 NM_016644 exon3 c.556delG p.E186fs . . 167.0 11.0 107.0 0.0 . 71 . . Atlas-INDEL LHX1 3975 hgsc.bcm.edu hg19 17 35300095 35300095 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LHX1 NM_005568 exon5 c.887delT p.F296fs . . 153.0 10.0 119.0 0.0 . 48 . . Atlas-INDEL MLL3 58508 hgsc.bcm.edu hg19 7 151848557 151848557 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MLL3 NM_170606 exon50 c.12637delT p.S4213fs . . 157.0 11.0 92.0 0.0 . 1564 . . Atlas-INDEL TENM4 26011 hgsc.bcm.edu hg19 11 78423720 78423720 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_001098816 exon26 c.3862delA p.M1288X . . 148.0 10.0 77.0 0.0 . . . . Atlas-INDEL SMAD3 4088 hgsc.bcm.edu hg19 15 67482771 67482771 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SMAD3 NM_005902 exon9 c.1174delA p.T392fs . . 147.0 10.0 133.0 0.0 . 119 . . Atlas-INDEL SOS1 6654 hgsc.bcm.edu hg19 2 39262357 39262357 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SOS1 NM_005633 exon8 c.1071delG p.L357fs . . 173.0 11.0 163.0 0.0 . 134 . . Atlas-INDEL HDAC6 10013 hgsc.bcm.edu hg19 X 48661166 48661166 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HDAC6 NM_006044 exon2 c.66delG p.S22fs . . 147.0 10.0 123.0 0.0 . 111 . . Atlas-INDEL HSPG2 3339 hgsc.bcm.edu hg19 1 22178628 22178628 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HSPG2 NM_005529 exon53 c.6824delA p.Q2275fs . . 243.0 15.0 114.0 0.0 . 311 . . Atlas-INDEL UGGT2 55757 hgsc.bcm.edu hg19 13 96684195 96684195 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UGGT2 NM_020121 exon2 c.190delT p.F64fs . . 203.0 13.0 140.0 0.0 . 127 . . Atlas-INDEL PTTG1 9232 hgsc.bcm.edu hg19 5 159851311 159851311 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PTTG1 NM_004219 exon4 c.343delG p.E115fs . . 173.0 11.0 104.0 0.0 . 15 . . Atlas-INDEL HECTD4 283450 hgsc.bcm.edu hg19 12 112622648 112622648 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_001109662 exon61 c.9721delC p.L3241fs . . 183.0 11.0 84.0 0.0 . . . . Atlas-INDEL ZFP41 286128 hgsc.bcm.edu hg19 8 144332034 144332034 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZFP41 NM_173832 exon2 c.20delG p.R7fs . . 198.0 13.0 47.0 0.0 . 25 . . Atlas-INDEL MIA3 375056 hgsc.bcm.edu hg19 1 222824154 222824154 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MIA3 NM_198551 exon11 c.3817delG p.E1273fs . . 250.0 17.0 143.0 0.0 . 167 . . Atlas-INDEL AP1S2 8905 hgsc.bcm.edu hg19 X 15864073 15864073 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AP1S2 NM_001272071 exon3 c.242delA p.E81fs . . 165.0 10.0 130.0 0.0 . 9 . . Atlas-INDEL ZC3H6 376940 hgsc.bcm.edu hg19 2 113089974 113089974 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZC3H6 NM_198581 exon12 c.3478delA p.T1160fs . . 166.0 11.0 112.0 0.0 . 93 . . Atlas-INDEL ST5 6764 hgsc.bcm.edu hg19 11 8736195 8736195 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ST5 NM_213618 exon7 c.1905delG p.K635fs . . 186.0 15.0 134.0 0.0 . 85 . . Atlas-INDEL SMCHD1 23347 hgsc.bcm.edu hg19 18 2722560 2722560 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SMCHD1 NM_015295 exon20 c.2501delC p.P834fs . . 162.0 10.0 149.0 0.0 . 88 . . Atlas-INDEL CLSTN2 64084 hgsc.bcm.edu hg19 3 140178605 140178605 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CLSTN2 NM_022131 exon7 c.1215delC p.D405fs . . 211.0 15.0 102.0 0.0 . 190 . . Atlas-INDEL VPS26A 9559 hgsc.bcm.edu hg19 10 70928313 70928313 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VPS26A NM_004896 exon8 c.795delC p.N265fs . . 168.0 13.0 142.0 0.0 . 24 . . Atlas-INDEL KCNMA1 3778 hgsc.bcm.edu hg19 10 78799310 78799310 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KCNMA1 NM_002247 exon15 c.1836delT p.G612fs . . 157.0 10.0 117.0 0.0 . 370 . . Atlas-INDEL YIF1B 90522 hgsc.bcm.edu hg19 19 38796095 38796095 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . YIF1B NM_001039672 exon8 c.843delG p.P281fs . . 162.0 10.0 161.0 0.0 . 47 . . Atlas-INDEL P2RX3 5024 hgsc.bcm.edu hg19 11 57118235 57118235 + Splice_Site DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . P2RX3 NM_002559 exon8 c.706-2G>- . . . 195.0 14.0 145.0 0.0 . 55 . . Atlas-INDEL UTP11L 51118 hgsc.bcm.edu hg19 1 38483393 38483393 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UTP11L NM_016037 exon3 c.178delG p.E60fs . . 262.0 16.0 160.0 0.0 . 17 . . Atlas-INDEL HEATR5B 54497 hgsc.bcm.edu hg19 2 37234290 37234290 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HEATR5B NM_019024 exon29 c.4681delC p.R1561fs . . 152.0 12.0 119.0 0.0 . 185 . . Atlas-INDEL SMC1B 27127 hgsc.bcm.edu hg19 22 45798221 45798221 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 SMC1B,NS,carcinoma,0,1 SMC1B NM_148674 exon5 c.847delG p.E283fs . . 192.0 12.0 149.0 0.0 . 215 . . Atlas-INDEL UGT2B7 7364 hgsc.bcm.edu hg19 4 69962593 69962593 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . UGT2B7 NM_001074 exon1 c.354delA p.I118fs . . 164.0 10.0 132.0 0.0 . 79 . . Atlas-INDEL MAP7D3 79649 hgsc.bcm.edu hg19 X 135313838 135313838 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MAP7D3 NM_024597 exon8 c.1279delA p.K427fs . . 142.0 10.0 141.0 0.0 . 102 . . Atlas-INDEL C2orf71 388939 hgsc.bcm.edu hg19 2 29293880 29293880 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C2orf71 NM_001029883 exon1 c.3249delT p.P1083fs . . 102.0 10.0 57.0 0.0 . 146 . . Atlas-INDEL SOX6 55553 hgsc.bcm.edu hg19 11 16208476 16208476 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SOX6 NM_001145819 exon5 c.601delG p.E201fs . . 175.0 11.0 114.0 0.0 . 149 . . Atlas-INDEL KIAA2026 158358 hgsc.bcm.edu hg19 9 5954073 5954073 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIAA2026 NM_001017969 exon4 c.2236delG p.A746fs . . 135.0 10.0 138.0 0.0 . 231 . . Atlas-INDEL TLK1 9874 hgsc.bcm.edu hg19 2 171862754 171862754 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TLK1 NM_012290 exon18 c.1808delT p.I603fs . . 195.0 12.0 174.0 0.0 . 134 . . Atlas-INDEL CRELD1 78987 hgsc.bcm.edu hg19 3 9976237 9976237 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CRELD1 NM_001077415 exon2 c.114delT p.S38fs . . 167.0 11.0 139.0 0.0 . 48 . . Atlas-INDEL PABPC4 8761 hgsc.bcm.edu hg19 1 40028016 40028016 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PABPC4 NM_001135653 exon13 c.1742delA p.Q581fs . . 248.0 16.0 135.0 0.0 . 56 . . Atlas-INDEL BBS9 27241 hgsc.bcm.edu hg19 7 33217199 33217199 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BBS9 NM_014451 exon5 c.437delT p.V146fs . . 99.0 11.0 75.0 0.0 . 194 . . Atlas-INDEL LUZP4 51213 hgsc.bcm.edu hg19 X 114536631 114536631 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LUZP4 NM_016383 exon2 c.165delT p.S55fs . . 185.0 12.0 184.0 0.0 . 51 . . Atlas-INDEL SECISBP2L 9728 hgsc.bcm.edu hg19 15 49293086 49293086 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SECISBP2L NM_001193489 exon15 c.2237delT p.I746fs . . 214.0 14.0 193.0 0.0 . 118 . . Atlas-INDEL ANKRD26 22852 hgsc.bcm.edu hg19 10 27303455 27303455 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKRD26 NM_014915 exon31 c.4693delG p.V1565fs . . 152.0 10.0 146.0 0.0 . 179 . . Atlas-INDEL THBS2 7058 hgsc.bcm.edu hg19 6 169646335 169646336 + Frame_Shift_Del DEL CA CA - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 CA CA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . THBS2 NM_003247 exon5 c.651_652del p.217_218del . . 111.0 17.0 87.0 0.0 . 230 . . Atlas-INDEL CACNA1F 778 hgsc.bcm.edu hg19 X 49066137 49066137 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CACNA1F NM_005183 exon41 c.4807delG p.G1603fs . . 123.0 11.0 92.0 0.0 . 218 . . Atlas-INDEL CES3 23491 hgsc.bcm.edu hg19 16 66995238 66995238 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CES3 NM_024922 exon1 c.27delC p.S9fs . . 191.0 12.0 162.0 0.0 . 56 . . Atlas-INDEL VPS29 51699 hgsc.bcm.edu hg19 12 110933940 110933940 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VPS29 NM_057180 exon3 c.85delC p.L29fs . . 144.0 11.0 103.0 0.0 . 10 . . Atlas-INDEL ELF1 1997 hgsc.bcm.edu hg19 13 41523943 41523943 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ELF1 NM_172373 exon5 c.529delG p.G177fs . . 169.0 13.0 245.0 0.0 . 65 . . Atlas-INDEL ADAM9 8754 hgsc.bcm.edu hg19 8 38880753 38880753 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ADAM9 NM_003816 exon9 c.822delT p.V274fs . . 157.0 10.0 196.0 0.0 . 66 . . Atlas-INDEL TBX10 347853 hgsc.bcm.edu hg19 11 67402373 67402373 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TBX10 NM_005995 exon3 c.292delT p.F98fs . . 188.0 16.0 109.0 0.0 . 25 . . Atlas-INDEL TSKU 25987 hgsc.bcm.edu hg19 11 76507185 76507185 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TSKU NM_015516 exon2 c.524delA p.H175fs . . 159.0 10.0 102.0 0.0 . 26 . . Atlas-INDEL ASPM 259266 hgsc.bcm.edu hg19 1 197102505 197102505 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ASPM NM_001206846 exon6 c.2395delG p.D799fs . . 179.0 11.0 100.0 0.0 . 444 . . Atlas-INDEL GALNT16 57452 hgsc.bcm.edu hg19 14 69795179 69795179 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GALNT16 NM_001168368 exon6 c.580delT p.S194fs . . 103.0 10.0 76.0 0.0 . 8 . . Atlas-INDEL SF3B1 23451 hgsc.bcm.edu hg19 2 198285793 198285793 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SF3B1 NM_001005526 exon3 c.261delT p.P87fs . . 153.0 10.0 151.0 0.0 . 1038 . . Atlas-INDEL DUSP12 11266 hgsc.bcm.edu hg19 1 161726728 161726728 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DUSP12 NM_007240 exon6 c.1013delG p.G338fs . . 140.0 10.0 76.0 0.0 . 20 . . Atlas-INDEL RBPMS2 348093 hgsc.bcm.edu hg19 15 65040685 65040685 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RBPMS2 NM_194272 exon6 c.501delA p.P167fs . . 149.0 10.0 124.0 0.0 . 14 . . Atlas-INDEL WIBG 84305 hgsc.bcm.edu hg19 12 56296053 56296053 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WIBG NM_032345 exon3 c.219delA p.P73fs . . 139.0 11.0 100.0 0.0 . 11 . . Atlas-INDEL DUT 1854 hgsc.bcm.edu hg19 15 48634251 48634251 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DUT NM_001025248 exon7 c.734delG p.G245fs . . 198.0 12.0 165.0 0.0 . 9 . . Atlas-INDEL ARHGAP20 57569 hgsc.bcm.edu hg19 11 110454273 110454273 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARHGAP20 NM_020809 exon14 c.1605delG p.K535fs . . 141.0 10.0 90.0 0.0 . 150 . . Atlas-INDEL OR2T11 127077 hgsc.bcm.edu hg19 1 248790265 248790265 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 OR2T11 NM_001001964 exon1 c.166delA p.M56fs . . 196.0 12.0 102.0 0.0 . 64 . . Atlas-INDEL AHDC1 27245 hgsc.bcm.edu hg19 1 27875231 27875231 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AHDC1 NM_001029882 exon6 c.3397delG p.D1133fs . . 154.0 10.0 88.0 0.0 . 98 . . Atlas-INDEL LRRC8B 23507 hgsc.bcm.edu hg19 1 90049043 90049043 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRRC8B NM_015350 exon5 c.833delA p.Y278fs . . 178.0 11.0 113.0 0.0 . 49 . . Atlas-INDEL ADAMTS12 81792 hgsc.bcm.edu hg19 5 33881513 33881513 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,2 ADAMTS12 NM_030955 exon2 c.201delG p.L67fs . . 143.0 10.0 122.0 0.0 . 464 . . Atlas-INDEL PNPT1 87178 hgsc.bcm.edu hg19 2 55907883 55907883 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PNPT1 NM_033109 exon7 c.530delT p.L177fs . . 180.0 11.0 139.0 0.0 . 68 . . Atlas-INDEL CACNA1E 777 hgsc.bcm.edu hg19 1 181701779 181701779 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CACNA1E NM_000721 exon20 c.2556delT p.R852fs . . 249.0 15.0 153.0 0.0 . 778 . . Atlas-INDEL TIGD6 81789 hgsc.bcm.edu hg19 5 149375707 149375707 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TIGD6 NM_001243253 exon2 c.206delG p.R69fs . . 143.0 13.0 63.0 0.0 . 29 . . Atlas-INDEL VWC2L 402117 hgsc.bcm.edu hg19 2 215279116 215279116 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VWC2L NM_001080500 exon2 c.198delA p.R66fs . . 115.0 10.0 121.0 0.0 . 40 . . Atlas-INDEL TAX1BP1 8887 hgsc.bcm.edu hg19 7 27827096 27827096 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TAX1BP1 NM_001206901 exon8 c.911delT p.L304X . . 171.0 14.0 116.0 0.0 . 71 . . Atlas-INDEL AGO4 192670 hgsc.bcm.edu hg19 1 36306817 36306817 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_017629 exon14 c.1775delA p.H592fs . . 154.0 10.0 113.0 0.0 . . . . Atlas-INDEL ZBTB21 49854 hgsc.bcm.edu hg19 21 43414014 43414014 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_001098402 exon3 c.192delT p.N64fs . . 160.0 12.0 174.0 0.0 . . . . Atlas-INDEL ATP7A 538 hgsc.bcm.edu hg19 X 77245318 77245318 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATP7A NM_000052 exon4 c.1199delC p.S400X . . 186.0 12.0 143.0 0.0 . 248 . . Atlas-INDEL RABL2B 11158 hgsc.bcm.edu hg19 22 51207957 51207957 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RABL2B NM_001130920 exon8 c.434delG p.S145fs . . 438.0 28.0 388.0 0.0 . 8 . . Atlas-INDEL RBMS3 27303 hgsc.bcm.edu hg19 3 29628669 29628669 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RBMS3 NM_001177712 exon4 c.371delC p.A124fs . . 143.0 10.0 91.0 0.0 . 62 . . Atlas-INDEL PRAME 23532 hgsc.bcm.edu hg19 22 22892453 22892453 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRAME NM_206954 exon5 c.649delG p.A217fs . . 145.0 10.0 169.0 0.0 . 78 . . Atlas-INDEL OR52E8 390079 hgsc.bcm.edu hg19 11 5878820 5878820 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR52E8 NM_001005168 exon1 c.114delC p.F38fs . . 213.0 19.0 128.0 0.0 . 54 . . Atlas-INDEL RAP1GAP 5909 hgsc.bcm.edu hg19 1 21936094 21936094 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RAP1GAP NM_001145658 exon15 c.1238delT p.L413fs . . 162.0 10.0 82.0 0.0 . 119 . . Atlas-INDEL MDN1 23195 hgsc.bcm.edu hg19 6 90382309 90382309 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MDN1 NM_014611 exon81 c.13588delG p.A4530fs . . 193.0 12.0 149.0 0.0 . 478 . . Atlas-INDEL JAG1 182 hgsc.bcm.edu hg19 20 10622493 10622493 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . JAG1 NM_000214 exon22 c.2621delC p.A874fs . . 188.0 13.0 187.0 0.0 . 213 . . Atlas-INDEL RUFY1 80230 hgsc.bcm.edu hg19 5 179023590 179023590 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RUFY1 NM_025158 exon13 c.1538delA p.Q513fs . . 182.0 11.0 101.0 0.0 . 101 . . Atlas-INDEL TREM1 54210 hgsc.bcm.edu hg19 6 41250470 41250470 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TREM1 NM_001242590 exon2 c.70delT p.L24X . . 225.0 14.0 136.0 0.0 . 38 . . Atlas-INDEL SLC12A1 6557 hgsc.bcm.edu hg19 15 48539132 48539132 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC12A1 NM_001184832 exon12 c.1478delG p.G493fs . . 135.0 10.0 100.0 0.0 . 243 . . Atlas-INDEL MOCOS 55034 hgsc.bcm.edu hg19 18 33800091 33800091 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MOCOS NM_017947 exon9 c.1870delG p.V624fs . . 135.0 10.0 121.0 0.0 . 84 . . Atlas-INDEL ZNF271 10778 hgsc.bcm.edu hg19 18 32889977 32889977 + RNA DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF271 . . . . . . 127.0 10.0 106.0 0.0 . 16 . . Atlas-INDEL MKI67IP 84365 hgsc.bcm.edu hg19 2 122485457 122485457 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MKI67IP NM_032390 exon7 c.726delG p.L242fs . . 198.0 12.0 166.0 0.0 . 27 . . Atlas-INDEL FILIP1 27145 hgsc.bcm.edu hg19 6 76124598 76124598 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FILIP1 NM_015687 exon2 c.92delG p.S31fs . . 192.0 13.0 133.0 0.0 . 173 . . Atlas-INDEL BIRC2 329 hgsc.bcm.edu hg19 11 102221110 102221110 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BIRC2 NM_001256163 exon2 c.524delA p.N175fs . . 133.0 11.0 85.0 0.0 . 51 . . Atlas-INDEL CHRNB4 1143 hgsc.bcm.edu hg19 15 78921420 78921420 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CHRNB4 NM_000750 exon5 c.1228delA p.R410fs . . 138.0 10.0 130.0 0.0 . 59 . . Atlas-INDEL AZI1 22994 hgsc.bcm.edu hg19 17 79172711 79172711 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AZI1 NM_014984 exon11 c.1254delA p.P418fs . . 130.0 10.0 78.0 0.0 . 145 . . Atlas-INDEL RORA 6095 hgsc.bcm.edu hg19 15 60803793 60803793 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RORA NM_134260 exon6 c.552delG p.K184fs . . 159.0 10.0 156.0 0.0 . 114 . . Atlas-INDEL PPIL6 285755 hgsc.bcm.edu hg19 6 109757309 109757309 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PPIL6 NM_001111298 exon2 c.230delG p.R77fs . . 286.0 18.0 198.0 0.0 . 20 . . Atlas-INDEL DCHS1 8642 hgsc.bcm.edu hg19 11 6649903 6649903 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DCHS1 NM_003737 exon13 c.5321delC p.A1774fs . . 161.0 10.0 107.0 0.0 . 277 . . Atlas-INDEL PLXNC1 10154 hgsc.bcm.edu hg19 12 94692436 94692436 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLXNC1 NM_005761 exon27 c.4102delC p.L1368fs . . 165.0 11.0 120.0 0.0 . 135 . . Atlas-INDEL BOD1L1 259282 hgsc.bcm.edu hg19 4 13602811 13602811 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_148894 exon10 c.5714delA p.D1905fs . . 149.0 10.0 153.0 0.0 . . . . Atlas-INDEL SH2D3A 10045 hgsc.bcm.edu hg19 19 6755180 6755180 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SH2D3A NM_005490 exon5 c.644delG p.R215fs . . 168.0 11.0 127.0 0.0 . 53 . . Atlas-INDEL N4BP2 55728 hgsc.bcm.edu hg19 4 40123872 40123872 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . N4BP2 NM_018177 exon9 c.4140delA p.L1380fs . . 248.0 16.0 197.0 0.0 . 166 . . Atlas-INDEL KALRN 8997 hgsc.bcm.edu hg19 3 124210240 124210240 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KALRN NM_003947 exon31 c.4651delA p.T1551fs . . 151.0 10.0 68.0 0.0 . 556 . . Atlas-INDEL TTLL11 158135 hgsc.bcm.edu hg19 9 124736391 124736391 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TTLL11 NM_001139442 exon6 c.1649delT p.V550fs . . 159.0 10.0 110.0 0.0 . 67 . . Atlas-INDEL STT3B 201595 hgsc.bcm.edu hg19 3 31674442 31674442 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . STT3B NM_178862 exon15 c.2202delA p.T734fs . . 174.0 11.0 133.0 0.0 . 52 . . Atlas-INDEL CCDC110 256309 hgsc.bcm.edu hg19 4 186382237 186382237 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCDC110 NM_152775 exon5 c.315delT p.N105fs . . 154.0 12.0 139.0 0.0 . 78 . . Atlas-INDEL OR5M11 219487 hgsc.bcm.edu hg19 11 56310222 56310222 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR5M11 NM_001005245 exon1 c.513delT p.S171fs . . 130.0 12.0 84.0 0.0 . 60 . . Atlas-INDEL C1QTNF3 114899 hgsc.bcm.edu hg19 5 34035781 34035781 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C1QTNF3 NM_181435 exon2 c.387delT p.P129fs . . 152.0 10.0 95.0 0.0 . 31 . . Atlas-INDEL VPS13D 55187 hgsc.bcm.edu hg19 1 12433904 12433904 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VPS13D NM_015378 exon55 c.10907delT p.L3636X . . 268.0 17.0 191.0 0.0 . 316 . . Atlas-INDEL MGAT4C 25834 hgsc.bcm.edu hg19 12 86383211 86383211 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MGAT4C NM_013244 exon5 c.115delA p.M39X . . 179.0 11.0 205.0 0.0 . 110 . . Atlas-INDEL MATN3 4148 hgsc.bcm.edu hg19 2 20202988 20202988 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MATN3 NM_002381 exon3 c.851delA p.E284fs . . 137.0 10.0 144.0 0.0 . 28 . . Atlas-INDEL CEP85L 387119 hgsc.bcm.edu hg19 6 118803074 118803074 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CEP85L NM_001178035 exon9 c.1623delT p.N541fs . . 120.0 12.0 75.0 0.0 . 26 . . Atlas-Indel,Pindel ZSCAN25 221785 hgsc.bcm.edu hg19 7 99219096 99219096 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_145115 exon5 c.487delT p.W163fs . . 159.0 10.0 120.0 0.0 . . . . Atlas-INDEL DDX23 9416 hgsc.bcm.edu hg19 12 49224336 49224336 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 DDX23,NS,carcinoma,0,1 DDX23 NM_004818 exon17 c.2380delG p.E794fs . . 262.0 18.0 203.0 0.0 . 82 . . Atlas-Indel,Pindel C19orf12 83636 hgsc.bcm.edu hg19 19 30193879 30193879 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C19orf12 NM_001031726 exon3 c.200delC p.A67fs . . 195.0 16.0 188.0 0.0 . 16 . . Atlas-INDEL SPATA31A4 642629 hgsc.bcm.edu hg19 9 41321778 41321778 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SPATA31A4 NM_001242613 exon4 c.3569delC p.S1190X . . 227.0 14.0 273.0 0.0 . 2 . . Atlas-INDEL PIN4 5303 hgsc.bcm.edu hg19 X 71401650 71401650 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PIN4 NM_001170747 exon1 c.89delG p.G30fs . . 180.0 11.0 152.0 0.0 . 8 . . Atlas-INDEL ANKRD50 57182 hgsc.bcm.edu hg19 4 125591535 125591535 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKRD50 NM_020337 exon4 c.2898delA p.L966fs . . 178.0 15.0 159.0 0.0 . 136 . . Atlas-INDEL NCBP1 4686 hgsc.bcm.edu hg19 9 100410326 100410326 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NCBP1 NM_002486 exon8 c.717delG p.L239fs . . 146.0 11.0 167.0 0.0 . 64 . . Atlas-INDEL ADD2 119 hgsc.bcm.edu hg19 2 70890579 70890579 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ADD2 NM_001617 exon16 c.2160delG p.K720fs . . 120.0 11.0 107.0 0.0 . 261 . . Atlas-INDEL TRIM66 9866 hgsc.bcm.edu hg19 11 8642705 8642705 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRIM66 NM_014818 exon15 c.2892delA p.P964fs . . 207.0 13.0 118.0 0.0 . 45 . . Atlas-INDEL MYOF 26509 hgsc.bcm.edu hg19 10 95157188 95157188 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYOF NM_133337 exon14 c.1248delT p.N416fs . . 156.0 10.0 126.0 0.0 . 177 . . Atlas-INDEL SNX2 6643 hgsc.bcm.edu hg19 5 122137589 122137589 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SNX2 NM_003100 exon4 c.415delA p.I139fs . . 316.0 19.0 154.0 0.0 . 42 . . Atlas-INDEL SPRY1 10252 hgsc.bcm.edu hg19 4 124323707 124323707 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SPRY1 NM_001258038 exon3 c.960delA p.X320C . . 168.0 13.0 148.0 0.0 . 28 . . Atlas-INDEL PLA2R1 22925 hgsc.bcm.edu hg19 2 160806244 160806244 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLA2R1 NM_001195641 exon25 c.3585delC p.F1195fs . . 135.0 10.0 129.0 0.0 . 153 . . Atlas-INDEL NNT 23530 hgsc.bcm.edu hg19 5 43644296 43644296 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NNT NM_182977 exon8 c.966delT p.G322fs . . 178.0 11.0 109.0 0.0 . 92 . . Atlas-INDEL MLL5 55904 hgsc.bcm.edu hg19 7 104715257 104715257 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MLL5 NM_182931 exon8 c.723delT p.C241X . . 167.0 12.0 130.0 0.0 . 173 . . Atlas-INDEL ZNF286B 729288 hgsc.bcm.edu hg19 17 18566149 18566149 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF286B NM_001145045 exon5 c.671delG p.S224fs . . 220.0 14.0 233.0 0.0 . 75 . . Atlas-INDEL ANTXR2 118429 hgsc.bcm.edu hg19 4 80957125 80957125 + Splice_Site DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANTXR2 NM_058172 exon9 c.697+2G>- . . . 213.0 13.0 159.0 0.0 . 97 . . Atlas-INDEL CCDC170 80129 hgsc.bcm.edu hg19 6 151907220 151907220 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_025059 exon7 c.1288delC p.Q430fs . . 145.0 12.0 73.0 0.0 . . . . Atlas-INDEL DNAJC22 79962 hgsc.bcm.edu hg19 12 49743396 49743396 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DNAJC22 NM_024902 exon2 c.740delT p.M247fs . . 155.0 10.0 135.0 0.0 . 29 . . Atlas-INDEL TPR 7175 hgsc.bcm.edu hg19 1 186340145 186340145 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TPR NM_003292 exon3 c.288delC p.N96fs . . 174.0 11.0 125.0 0.0 . 441 . . Atlas-INDEL PIEZO1 9780 hgsc.bcm.edu hg19 16 88793481 88793481 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PIEZO1 NM_001142864 exon24 c.3422delA p.E1141fs . . 158.0 10.0 136.0 0.0 . 79 . . Atlas-INDEL CACNB4 785 hgsc.bcm.edu hg19 2 152709963 152709963 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 CACNB4_ENST00000539935,NS,carcinoma,0,2 CACNB4 NM_001145798 exon12 c.1116delA p.P372fs . . 115.0 10.0 89.0 0.0 . 108 . . Atlas-INDEL EYS 346007 hgsc.bcm.edu hg19 6 64574091 64574091 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EYS NM_001142800 exon36 c.7217delT p.L2406fs . . 184.0 12.0 97.0 0.0 . 527 . . Atlas-INDEL KCNH5 27133 hgsc.bcm.edu hg19 14 63174612 63174612 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KCNH5 NM_139318 exon11 c.2582delC p.T861fs . . 183.0 14.0 193.0 0.0 . 320 . . Atlas-INDEL BCAR1 9564 hgsc.bcm.edu hg19 16 75269533 75269533 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BCAR1 NM_001170714 exon6 c.1403delC p.A468fs . . 151.0 11.0 133.0 0.0 . 184 . . Atlas-INDEL ERBB4 2066 hgsc.bcm.edu hg19 2 212248737 212248737 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ERBB4,NS,carcinoma,0,2 ERBB4 NM_005235 exon28 c.3531delT p.N1177fs . . 113.0 11.0 108.0 0.0 . 480 . . Atlas-INDEL SAMM50 25813 hgsc.bcm.edu hg19 22 44379821 44379821 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SAMM50 NM_015380 exon12 c.1015delC p.L339fs . . 160.0 10.0 134.0 0.0 . 30 . . Atlas-INDEL MYH7 4625 hgsc.bcm.edu hg19 14 23888507 23888507 + Splice_Site DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYH7 NM_000257 exon30 c.3854-2C>- . . . 126.0 10.0 84.0 0.0 . 349 . . Atlas-INDEL CTAGE5 4253 hgsc.bcm.edu hg19 14 39788448 39788448 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 CTAGE5,colon,carcinoma,0,1 CTAGE5 NM_001247989 exon18 c.1510delG p.E504fs . . 114.0 10.0 70.0 0.0 . 75 . . Atlas-INDEL CTSA 5476 hgsc.bcm.edu hg19 20 44521908 44521908 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 CTSA,NS,carcinoma,0,1 CTSA NM_000308 exon7 c.703delT p.S235fs . . 155.0 10.0 157.0 0.0 . 52 . . Atlas-INDEL GPR107 57720 hgsc.bcm.edu hg19 9 132863470 132863470 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GPR107 NM_001136557 exon12 c.1098delC p.D366fs . . 190.0 12.0 184.0 0.0 . 30 . . Atlas-INDEL CDH11 1009 hgsc.bcm.edu hg19 16 64981570 64981570 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDH11 NM_001797 exon13 c.2328delA p.G776fs . . 153.0 13.0 178.0 0.0 . 260 . . Atlas-INDEL CRTAC1 55118 hgsc.bcm.edu hg19 10 99640100 99640100 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CRTAC1 NM_001206528 exon14 c.1726delG p.V576fs . . 152.0 10.0 144.0 0.0 . 86 . . Atlas-INDEL CHDH 55349 hgsc.bcm.edu hg19 3 53852175 53852175 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CHDH NM_018397 exon9 c.1415delT p.I472fs . . 155.0 11.0 105.0 0.0 . 34 . . Atlas-INDEL RPP14 11102 hgsc.bcm.edu hg19 3 58296091 58296091 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RPP14 NM_007042 exon2 c.34delG p.V12fs . . 157.0 10.0 117.0 0.0 . 6 . . Atlas-INDEL SENP6 26054 hgsc.bcm.edu hg19 6 76331286 76331286 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SENP6 NM_015571 exon2 c.90delT p.F30fs . . 256.0 16.0 157.0 0.0 . 189 . . Atlas-INDEL TTLL7 79739 hgsc.bcm.edu hg19 1 84386998 84386998 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TTLL7 NM_024686 exon11 c.1223delG p.R408fs . . 189.0 12.0 91.0 0.0 . 93 . . Atlas-INDEL CNOT3 4849 hgsc.bcm.edu hg19 19 54647778 54647778 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CNOT3 NM_014516 exon6 c.294delC p.T98fs . . 122.0 10.0 107.0 0.0 . 133 . . Atlas-INDEL TMEM27 57393 hgsc.bcm.edu hg19 X 15682878 15682878 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TMEM27 NM_020665 exon1 c.22delC p.L8fs . . 149.0 11.0 133.0 0.0 . 21 . . Atlas-INDEL EYA4 2070 hgsc.bcm.edu hg19 6 133783807 133783807 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EYA4 NM_172105 exon9 c.628delC p.Q210fs . . 116.0 10.0 99.0 0.0 . 196 . . Atlas-INDEL MIR1179 100302235 hgsc.bcm.edu hg19 15 89151344 89151344 + RNA DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . . . . . . . 165.0 10.0 129.0 0.0 . . . . Atlas-INDEL ACAD8 27034 hgsc.bcm.edu hg19 11 134132519 134132519 + Splice_Site DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACAD8 NM_014384 exon10 c.1195+2A>- . . . 127.0 10.0 58.0 0.0 . 33 . . Atlas-INDEL EML6 400954 hgsc.bcm.edu hg19 2 55189708 55189708 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EML6 NM_001039753 exon35 c.5017delG p.E1673fs . . 128.0 14.0 106.0 0.0 . 85 . . Atlas-Indel,Pindel AMPD3 272 hgsc.bcm.edu hg19 11 10524339 10524339 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AMPD3 NM_000480 exon13 c.1940delG p.S647fs . . 152.0 10.0 141.0 0.0 . 68 . . Atlas-INDEL SOGA3 387104 hgsc.bcm.edu hg19 6 127834044 127834044 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_001012279 exon4 c.1478delT p.M493fs . . 245.0 16.0 172.0 0.0 . . . . Atlas-INDEL HK3 3101 hgsc.bcm.edu hg19 5 176309024 176309024 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HK3 NM_002115 exon16 c.2159delA p.D720fs . . 193.0 15.0 97.0 0.0 . 210 . . Atlas-INDEL ACSM3 6296 hgsc.bcm.edu hg19 16 20808252 20808252 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACSM3 NM_005622 exon14 c.1718delC p.T573fs . . 205.0 13.0 209.0 0.0 . 113 . . Atlas-INDEL TRH 7200 hgsc.bcm.edu hg19 3 129695643 129695643 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRH NM_007117 exon3 c.312delA p.E104fs . . 142.0 10.0 70.0 0.0 . 30 . . Atlas-INDEL STK25 10494 hgsc.bcm.edu hg19 2 242440926 242440926 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . STK25 NM_001271977 exon3 c.229delT p.Y77fs . . 119.0 10.0 98.0 0.0 . 32 . . Atlas-INDEL BOD1L1 259282 hgsc.bcm.edu hg19 4 13601642 13601642 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_148894 exon10 c.6883delA p.T2295fs . . 179.0 11.0 169.0 0.0 . . . . Atlas-INDEL ARL3 403 hgsc.bcm.edu hg19 10 104449670 104449670 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARL3 NM_004311 exon4 c.296delG p.R99fs . . 157.0 10.0 147.0 0.0 . 13 . . Atlas-INDEL TTC3 7267 hgsc.bcm.edu hg19 21 38555184 38555184 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TTC3 NM_001001894 exon36 c.4725delG p.K1575fs . . 209.0 13.0 178.0 0.0 . 182 . . Atlas-INDEL RBM12B 389677 hgsc.bcm.edu hg19 8 94746023 94746023 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RBM12B NM_203390 exon3 c.2617delA p.R873fs . . 163.0 10.0 54.0 0.0 . 78 . . Atlas-INDEL LRRFIP1 9208 hgsc.bcm.edu hg19 2 238666189 238666189 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRRFIP1 NM_001137550 exon17 c.1221delA p.I407fs . . 240.0 16.0 248.0 0.0 . 171 . . Atlas-INDEL ZCCHC9 84240 hgsc.bcm.edu hg19 5 80608475 80608475 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZCCHC9 NM_001131036 exon6 c.809delA p.N270fs . . 212.0 13.0 105.0 0.0 . 26 . . Atlas-INDEL MYO10 4651 hgsc.bcm.edu hg19 5 16762178 16762178 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYO10 NM_012334 exon16 c.1633delG p.G545fs . . 192.0 13.0 101.0 0.0 . 198 . . Atlas-INDEL CFL2 1073 hgsc.bcm.edu hg19 14 35182277 35182277 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CFL2 NM_021914 exon3 c.378delG p.K126fs . . 195.0 12.0 146.0 0.0 . 22 . . Atlas-INDEL PUS7L 83448 hgsc.bcm.edu hg19 12 44124292 44124292 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 PUS7L,colon,carcinoma,+1,1 PUS7L NM_001098614 exon9 c.1994delC p.T665fs . . 243.0 15.0 226.0 0.0 . 73 . . Atlas-INDEL KRT20 54474 hgsc.bcm.edu hg19 17 39041106 39041106 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KRT20 NM_019010 exon1 c.333delG p.P111fs . . 157.0 10.0 172.0 0.0 . 38 . . Atlas-INDEL DDX60L 91351 hgsc.bcm.edu hg19 4 169348237 169348237 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DDX60L NM_001012967 exon14 c.1915delC p.H639fs . . 135.0 10.0 153.0 0.0 . 116 . . Atlas-INDEL PDE2A 5138 hgsc.bcm.edu hg19 11 72342169 72342169 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PDE2A NM_001243784 exon2 c.35delT p.L12fs . . 149.0 10.0 122.0 0.0 . 156 . . Atlas-INDEL MARK3 4140 hgsc.bcm.edu hg19 14 103934485 103934485 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MARK3 NM_001128919 exon12 c.1225delG p.V409fs . . 179.0 11.0 157.0 0.0 . 86 . . Atlas-INDEL MTHFD1L 25902 hgsc.bcm.edu hg19 6 151198808 151198808 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MTHFD1L NM_001242767 exon3 c.350delA p.N117fs . . 154.0 11.0 117.0 0.0 . 75 . . Atlas-INDEL MYH7 4625 hgsc.bcm.edu hg19 14 23894966 23894966 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYH7 NM_000257 exon20 c.2225delC p.A742fs . . 164.0 11.0 118.0 0.0 . 349 . . Atlas-INDEL CCDC67 159989 hgsc.bcm.edu hg19 11 93104240 93104240 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 CCDC67 NM_181645 exon7 c.582delT p.G194fs . . 241.0 16.0 152.0 0.0 . 57 . . Atlas-INDEL HINT3 135114 hgsc.bcm.edu hg19 6 126278229 126278229 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HINT3 NM_138571 exon1 c.105delT p.A35fs . . 184.0 12.0 111.0 0.0 . 14 . . Atlas-INDEL SHPRH 257218 hgsc.bcm.edu hg19 6 146254194 146254194 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SHPRH NM_173082 exon14 c.3139delG p.G1047fs . . 125.0 10.0 85.0 0.0 . 169 . . Atlas-INDEL MRC1 4360 hgsc.bcm.edu hg19 10 17917243 17917243 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MRC1 NM_002438 exon17 c.2527delG p.E843fs . . 175.0 11.0 138.0 0.0 . 13 . . Atlas-INDEL SMARCD2 6603 hgsc.bcm.edu hg19 17 61914354 61914354 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SMARCD2 NM_001098426 exon4 c.496delG p.E166fs . . 132.0 10.0 77.0 0.0 . 29 . . Atlas-INDEL PTPN23 25930 hgsc.bcm.edu hg19 3 47454399 47454399 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PTPN23 NM_015466 exon25 c.4634delC p.P1545fs . . 328.0 22.0 182.0 0.0 . 85 . . Atlas-INDEL SSX4B 548313 hgsc.bcm.edu hg19 X 48244046 48244046 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SSX4B NM_001034832 exon3 c.112delG p.E38fs . . 319.0 20.0 308.0 0.0 . 9 . . Atlas-INDEL CCDC7 221016 hgsc.bcm.edu hg19 10 32832279 32832279 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCDC7 NM_145023 exon13 c.1044delG p.K348fs . . 230.0 17.0 126.0 0.0 . 47 . . Atlas-INDEL ATF3 467 hgsc.bcm.edu hg19 1 212788594 212788594 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATF3 NM_001030287 exon2 c.230delC p.T77fs . . 147.0 14.0 89.0 0.0 . 22 . . Atlas-INDEL ACRC 93953 hgsc.bcm.edu hg19 X 70800684 70800684 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACRC NM_052957 exon2 c.12delC p.C4X . . 238.0 17.0 215.0 0.0 . 110 . . Atlas-INDEL TOP2B 7155 hgsc.bcm.edu hg19 3 25679663 25679663 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TOP2B NM_001068 exon5 c.520delG p.V174fs . . 275.0 20.0 192.0 0.0 . 98 . . Atlas-INDEL ZCWPW2 152098 hgsc.bcm.edu hg19 3 28557110 28557110 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZCWPW2 NM_001040432 exon7 c.781delA p.R261fs . . 200.0 12.0 126.0 0.0 . 49 . . Atlas-INDEL FAM65B 9750 hgsc.bcm.edu hg19 6 24806664 24806664 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM65B NM_014722 exon23 c.3145delT p.F1049fs . . 106.0 12.0 81.0 0.0 . 134 . . Atlas-INDEL SDAD1 55153 hgsc.bcm.edu hg19 4 76895289 76895289 + Splice_Site DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SDAD1 NM_018115 exon8 c.579-2C>- . . . 140.0 10.0 175.0 0.0 . 47 . . Atlas-INDEL SLC35F3 148641 hgsc.bcm.edu hg19 1 234041422 234041422 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC35F3 NM_173508 exon2 c.200delC p.P67fs . . 159.0 11.0 90.0 0.0 . 81 . . Atlas-INDEL TTC37 9652 hgsc.bcm.edu hg19 5 94856440 94856440 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TTC37 NM_014639 exon20 c.2095delG p.A699fs . . 237.0 16.0 113.0 0.0 . 128 . . Atlas-INDEL APOBEC3B 9582 hgsc.bcm.edu hg19 22 39381926 39381926 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . APOBEC3B NM_004900 exon3 c.283delA p.T95fs . . 127.0 10.0 126.0 0.0 . 32 . . Atlas-INDEL IFNL3 282617 hgsc.bcm.edu hg19 19 39734707 39734707 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_172139 exon3 c.350delA p.D117fs . . 161.0 10.0 108.0 0.0 . . . . Atlas-INDEL RBM33 155435 hgsc.bcm.edu hg19 7 155511123 155511123 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RBM33 NM_053043 exon9 c.1245delA p.G415fs . . 166.0 10.0 129.0 0.0 . 157 . . Atlas-INDEL ZHX2 22882 hgsc.bcm.edu hg19 8 123965336 123965336 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZHX2 NM_014943 exon3 c.1585delG p.A529fs . . 257.0 18.0 69.0 0.0 . 106 . . Atlas-INDEL AHDC1 27245 hgsc.bcm.edu hg19 1 27876439 27876439 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AHDC1 NM_001029882 exon6 c.2189delA p.E730fs . . 348.0 22.0 195.0 0.0 . 98 . . Atlas-INDEL SLC4A4 8671 hgsc.bcm.edu hg19 4 72432766 72432766 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 SLC4A4_ENST00000425175,NS,carcinoma,0,1 SLC4A4 NM_001134742 exon24 c.3144delT p.D1048fs . . 100.0 10.0 124.0 0.0 . 269 . . Atlas-INDEL VIPR1 7433 hgsc.bcm.edu hg19 3 42573788 42573788 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . VIPR1 NM_004624 exon10 c.972delG p.R324fs . . 215.0 14.0 135.0 0.0 . 45 . . Atlas-INDEL SMARCA1 6594 hgsc.bcm.edu hg19 X 128640085 128640085 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SMARCA1 NM_139035 exon8 c.1071delA p.L357fs . . 142.0 11.0 128.0 0.0 . 126 . . Atlas-INDEL C14orf93 60686 hgsc.bcm.edu hg19 14 23457145 23457145 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C14orf93 NM_021944 exon6 c.1165delG p.E389fs . . 148.0 11.0 115.0 0.0 . 33 . . Atlas-INDEL SEC62 7095 hgsc.bcm.edu hg19 3 169700648 169700648 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 SEC62 NM_003262 exon4 c.404delC p.T135fs . . 126.0 10.0 68.0 0.0 . 27 . . Atlas-INDEL SEC24A 10802 hgsc.bcm.edu hg19 5 134059335 134059335 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SEC24A NM_021982 exon22 c.3141delA p.P1047fs . . 177.0 11.0 99.0 0.0 . 77 . . Atlas-INDEL MLL5 55904 hgsc.bcm.edu hg19 7 104745930 104745930 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MLL5 NM_182931 exon18 c.2240delG p.G747fs . . 120.0 10.0 66.0 0.0 . 173 . . Atlas-INDEL FAM151A 338094 hgsc.bcm.edu hg19 1 55078303 55078303 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM151A NM_176782 exon5 c.657delA p.P219fs . . 156.0 10.0 101.0 0.0 . 58 . . Atlas-INDEL MYO15A 51168 hgsc.bcm.edu hg19 17 18077149 18077149 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYO15A NM_016239 exon64 c.10404delG p.R3468fs . . 228.0 14.0 214.0 0.0 . 268 . . Atlas-INDEL ZMYM4 9202 hgsc.bcm.edu hg19 1 35835675 35835675 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZMYM4 NM_005095 exon6 c.885delG p.L295fs . . 161.0 12.0 102.0 0.0 . 143 . . Atlas-INDEL CLK4 57396 hgsc.bcm.edu hg19 5 178032333 178032333 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CLK4 NM_020666 exon11 c.1186delA p.I396fs . . 214.0 13.0 120.0 0.0 . 103 . . Atlas-INDEL FAT2 2196 hgsc.bcm.edu hg19 5 150924388 150924388 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAT2 NM_001447 exon9 c.6301delA p.T2101fs . . 208.0 14.0 110.0 0.0 . 465 . . Atlas-INDEL SOS1 6654 hgsc.bcm.edu hg19 2 39262585 39262585 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SOS1 NM_005633 exon7 c.922delC p.H308fs . . 165.0 11.0 177.0 0.0 . 134 . . Atlas-INDEL SYTL3 94120 hgsc.bcm.edu hg19 6 159103969 159103969 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SYTL3 NM_001009991 exon7 c.341delT p.I114fs . . 176.0 14.0 154.0 0.0 . 49 . . Atlas-INDEL SPEG 10290 hgsc.bcm.edu hg19 2 220354172 220354172 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SPEG NM_005876 exon36 c.8431delG p.A2811fs . . 205.0 13.0 154.0 0.0 . 272 . . Atlas-INDEL TRUB1 142940 hgsc.bcm.edu hg19 10 116698055 116698055 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRUB1 NM_139169 exon1 c.42delG p.L14fs . . 186.0 14.0 175.0 0.0 . 30 . . Atlas-INDEL CPSF6 11052 hgsc.bcm.edu hg19 12 69650513 69650513 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CPSF6 NM_007007 exon4 c.410delC p.S137X . . 194.0 13.0 178.0 0.0 . 96 . . Atlas-INDEL IMMP1L 196294 hgsc.bcm.edu hg19 11 31477911 31477911 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IMMP1L NM_144981 exon5 c.218delG p.S73fs . . 161.0 12.0 133.0 0.0 . 16 . . Atlas-INDEL NR4A2 4929 hgsc.bcm.edu hg19 2 157186374 157186374 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,2 NR4A2 NM_006186 exon3 c.326delA p.Q109fs . . 172.0 11.0 143.0 0.0 . 82 . . Atlas-INDEL KRT7 3855 hgsc.bcm.edu hg19 12 52639299 52639299 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KRT7 NM_005556 exon7 c.1087delC p.R363fs . . 127.0 13.0 106.0 0.0 . 48 . . Atlas-INDEL EIF4G1 1981 hgsc.bcm.edu hg19 3 184040193 184040193 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EIF4G1 NM_001194947 exon11 c.1583delT p.L528fs . . 183.0 16.0 114.0 0.0 . 151 . . Atlas-INDEL SLC1A4 6509 hgsc.bcm.edu hg19 2 65237733 65237733 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC1A4 NM_003038 exon4 c.635delT p.I212fs . . 164.0 10.0 161.0 0.0 . 33 . . Atlas-INDEL XPOT 11260 hgsc.bcm.edu hg19 12 64827209 64827209 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . XPOT NM_007235 exon19 c.2277delG p.P759fs . . 138.0 12.0 128.0 0.0 . 105 . . Atlas-INDEL URGCP 55665 hgsc.bcm.edu hg19 7 43916637 43916637 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . URGCP NM_001077663 exon6 c.2426delC p.T809fs . . 196.0 12.0 103.0 0.0 . 170 . . Atlas-INDEL TSPAN19 144448 hgsc.bcm.edu hg19 12 85411267 85411267 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TSPAN19 NM_001100917 exon7 c.563delG p.C188fs . . 139.0 11.0 123.0 0.0 . 23 . . Atlas-INDEL GPN3 51184 hgsc.bcm.edu hg19 12 110895351 110895351 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GPN3 NM_001164372 exon4 c.532delC p.L178fs . . 194.0 13.0 129.0 0.0 . 37 . . Atlas-INDEL TAF1B 9014 hgsc.bcm.edu hg19 2 9994472 9994472 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TAF1B NM_005680 exon5 c.320delA p.N107fs . . 163.0 10.0 151.0 0.0 . 62 . . Atlas-INDEL PCNXL4 64430 hgsc.bcm.edu hg19 14 60592492 60592492 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_022495 exon9 c.2515delA p.I839fs . . 115.0 10.0 98.0 0.0 . . . . Atlas-INDEL IFT80 57560 hgsc.bcm.edu hg19 3 160037585 160037585 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IFT80 NM_020800 exon9 c.921delT p.N307fs . . 162.0 10.0 127.0 0.0 . 68 . . Atlas-INDEL SYNE2 23224 hgsc.bcm.edu hg19 14 64593150 64593150 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SYNE2 NM_182914 exon72 c.13659delG p.M4553fs . . 201.0 13.0 165.0 0.0 . 577 . . Atlas-INDEL EFHB 151651 hgsc.bcm.edu hg19 3 19924173 19924173 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 EFHB_ENST00000295824,NS,carcinoma,0,4 EFHB NM_144715 exon12 c.2198delG p.R733fs . . 144.0 10.0 91.0 0.0 . 186 . . Atlas-INDEL L3MBTL3 84456 hgsc.bcm.edu hg19 6 130425608 130425608 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . L3MBTL3 NM_032438 exon19 c.1773delT p.N591fs . . 194.0 13.0 156.0 0.0 . 99 . . Atlas-INDEL UBE3D 90025 hgsc.bcm.edu hg19 6 83733743 83733743 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_198920 exon6 c.683delA p.Y228fs . . 215.0 15.0 147.0 0.0 . . . . Atlas-INDEL PLEKHO1 51177 hgsc.bcm.edu hg19 1 150131502 150131502 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLEKHO1 NM_016274 exon6 c.1013delA p.D338fs . . 233.0 16.0 126.0 0.0 . 37 . . Atlas-INDEL TMPRSS15 5651 hgsc.bcm.edu hg19 21 19725327 19725327 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TMPRSS15 NM_002772 exon10 c.1065delC p.F355fs . . 176.0 11.0 176.0 0.0 . 189 . . Atlas-INDEL CTNNB1 1499 hgsc.bcm.edu hg19 3 41266867 41266867 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CTNNB1 NM_001098210 exon5 c.537delT p.S179fs . . 182.0 12.0 122.0 0.0 . 4904 . . Atlas-INDEL MYH11 4629 hgsc.bcm.edu hg19 16 15876271 15876271 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYH11 NM_001040114 exon7 c.719delC p.T240fs . . 142.0 11.0 146.0 0.0 . 520 . . Atlas-INDEL STT3B 201595 hgsc.bcm.edu hg19 3 31656646 31656646 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . STT3B NM_178862 exon6 c.926delC p.P309fs . . 155.0 12.0 130.0 0.0 . 52 . . Atlas-INDEL SLC9A6 10479 hgsc.bcm.edu hg19 X 135080706 135080706 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC9A6 NM_001042537 exon4 c.668delG p.C223fs . . 154.0 11.0 138.0 0.0 . 64 . . Atlas-INDEL TTF2 8458 hgsc.bcm.edu hg19 1 117618310 117618310 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TTF2 NM_003594 exon5 c.1103delG p.S368fs . . 382.0 23.0 191.0 0.0 . 92 . . Atlas-INDEL SLCO1B1 10599 hgsc.bcm.edu hg19 12 21375253 21375253 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLCO1B1 NM_006446 exon13 c.1701delG p.L567fs . . 140.0 10.0 165.0 0.0 . 151 . . Atlas-INDEL SLC37A1 54020 hgsc.bcm.edu hg19 21 43945906 43945906 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLC37A1 NM_018964 exon4 c.76delA p.I26fs . . 161.0 11.0 169.0 0.0 . 48 . . Atlas-INDEL CUEDC1 404093 hgsc.bcm.edu hg19 17 55945607 55945607 + Splice_Site DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CUEDC1 NM_001271875 exon9 c.941-2C>- . . . 145.0 10.0 117.0 0.0 . 37 . . Atlas-INDEL FIGNL1 63979 hgsc.bcm.edu hg19 7 50514614 50514614 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FIGNL1 NM_022116 exon4 c.373delT p.F125fs . . 157.0 10.0 102.0 0.0 . 73 . . Atlas-Indel,Pindel ANKLE2 23141 hgsc.bcm.edu hg19 12 133312071 133312071 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKLE2 NM_015114 exon9 c.1622delC p.T541fs . . 178.0 11.0 118.0 0.0 . 76 . . Atlas-INDEL PHF20 51230 hgsc.bcm.edu hg19 20 34526859 34526859 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PHF20 NM_016436 exon16 c.2540delA p.Y847fs . . 128.0 10.0 101.0 0.0 . 94 . . Atlas-INDEL CSNK1A1 1452 hgsc.bcm.edu hg19 5 148889476 148889476 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CSNK1A1 NM_001025105 exon8 c.801delG p.K267fs . . 225.0 15.0 73.0 0.0 . 63 . . Atlas-INDEL STT3B 201595 hgsc.bcm.edu hg19 3 31665200 31665200 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . STT3B NM_178862 exon11 c.1573delG p.E525fs . . 156.0 10.0 133.0 0.0 . 52 . . Atlas-INDEL NOVA2 4858 hgsc.bcm.edu hg19 19 46464290 46464290 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NOVA2 NM_002516 exon2 c.208delA p.K70fs . . 128.0 10.0 116.0 0.0 . 38 . . Atlas-INDEL TULP1 7287 hgsc.bcm.edu hg19 6 35473878 35473878 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TULP1 NM_003322 exon10 c.902delA p.Q301fs . . 83.0 11.0 36.0 0.0 . 51 . . Atlas-INDEL HAPLN1 1404 hgsc.bcm.edu hg19 5 82948593 82948593 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HAPLN1 NM_001884 exon3 c.152delC p.S51fs . . 162.0 10.0 77.0 0.0 . 79 . . Atlas-INDEL MLL 4297 hgsc.bcm.edu hg19 11 118347674 118347674 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MLL NM_001197104 exon4 c.3310delA p.I1104fs . . 161.0 10.0 157.0 0.0 . 548 . . Atlas-INDEL SEC24C 9632 hgsc.bcm.edu hg19 10 75525560 75525560 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 SEC24C NM_004922 exon11 c.1368delT p.V456fs . . 173.0 12.0 184.0 0.0 . 86 . . Atlas-INDEL HECTD4 283450 hgsc.bcm.edu hg19 12 112630422 112630422 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 C12orf51_ENST00000377560,NS,carcinoma,0,2 . NM_001109662 exon59 c.8833delA p.T2945fs . . 152.0 11.0 70.0 0.0 . . . . Atlas-INDEL RBBP8 5932 hgsc.bcm.edu hg19 18 20573135 20573135 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RBBP8 NM_203292 exon11 c.1344delG p.K448fs . . 136.0 10.0 150.0 0.0 . 138 . . Atlas-INDEL ANKRD26 22852 hgsc.bcm.edu hg19 10 27317833 27317833 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKRD26 NM_014915 exon27 c.3921delG p.K1307fs . . 240.0 16.0 218.0 0.0 . 179 . . Atlas-INDEL EDA2R 60401 hgsc.bcm.edu hg19 X 65822591 65822591 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EDA2R NM_001242310 exon4 c.402delT p.P134fs . . 155.0 12.0 109.0 0.0 . 30 . . Atlas-INDEL MUCL1 118430 hgsc.bcm.edu hg19 12 55251994 55251994 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MUCL1 NM_058173 exon4 c.240delT p.V80fs . . 196.0 12.0 179.0 0.0 . 11 . . Atlas-INDEL SMCR8 140775 hgsc.bcm.edu hg19 17 18221365 18221365 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SMCR8 NM_144775 exon1 c.2261delT p.V754fs . . 147.0 12.0 113.0 0.0 . 62 . . Atlas-INDEL PYROXD1 79912 hgsc.bcm.edu hg19 12 21605042 21605042 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PYROXD1 NM_024854 exon5 c.441delT p.A147fs . . 156.0 11.0 230.0 0.0 . 38 . . Atlas-INDEL TRIM46 80128 hgsc.bcm.edu hg19 1 155156381 155156381 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRIM46 NM_025058 exon10 c.1994delC p.S665fs . . 133.0 11.0 78.0 0.0 . 79 . . Atlas-INDEL NCKAP1 10787 hgsc.bcm.edu hg19 2 183822266 183822266 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NCKAP1 NM_205842 exon20 c.1959delG p.K653fs . . 152.0 10.0 162.0 0.0 . 105 . . Atlas-INDEL LIMK1 3984 hgsc.bcm.edu hg19 7 73521482 73521482 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 LIMK1,NS,carcinoma,0,1 LIMK1 NM_002314 exon8 c.1023delC p.H341fs . . 169.0 11.0 151.0 0.0 . 55 . . Atlas-INDEL WDR17 116966 hgsc.bcm.edu hg19 4 177093632 177093632 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDR17 NM_170710 exon26 c.3325delG p.E1109fs . . 195.0 15.0 204.0 0.0 . 198 . . Atlas-INDEL PRICKLE2 166336 hgsc.bcm.edu hg19 3 64085551 64085551 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRICKLE2 NM_198859 exon8 c.1712delC p.S571fs . . 137.0 10.0 99.0 0.0 . 88 . . Atlas-INDEL FHOD3 80206 hgsc.bcm.edu hg19 18 34205516 34205516 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FHOD3 NM_025135 exon10 c.999delA p.P333fs . . 144.0 10.0 105.0 0.0 . 210 . . Atlas-INDEL DNAH7 56171 hgsc.bcm.edu hg19 2 196753679 196753679 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DNAH7 NM_018897 exon32 c.5074delG p.D1692fs . . 264.0 16.0 228.0 0.0 . 512 . . Atlas-INDEL C1orf64 149563 hgsc.bcm.edu hg19 1 16332618 16332618 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C1orf64 NM_178840 exon2 c.286delA p.T96fs . . 148.0 10.0 104.0 0.0 . 16 . . Atlas-INDEL ZNF271 10778 hgsc.bcm.edu hg19 18 32889109 32889109 + RNA DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF271 . . . . . . 179.0 11.0 175.0 0.0 . 16 . . Atlas-INDEL ABCE1 6059 hgsc.bcm.edu hg19 4 146033436 146033436 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABCE1 NM_002940 exon9 c.755delG p.R252fs . . 152.0 12.0 139.0 0.0 . 47 . . Atlas-INDEL PRUNE2 158471 hgsc.bcm.edu hg19 9 79318977 79318977 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRUNE2 NM_015225 exon9 c.7553delC p.T2518fs . . 170.0 11.0 127.0 0.0 . 331 . . Atlas-INDEL KIAA1598 57698 hgsc.bcm.edu hg19 10 118728182 118728182 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIAA1598 NM_001127211 exon3 c.154delC p.L52fs . . 150.0 10.0 123.0 0.0 . 74 . . Atlas-INDEL ERAL1 26284 hgsc.bcm.edu hg19 17 27182148 27182148 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ERAL1,NS,carcinoma,0,1 ERAL1 NM_005702 exon1 c.95delC p.P32fs . . 175.0 11.0 115.0 0.0 . 28 . . Atlas-INDEL ELP3 55140 hgsc.bcm.edu hg19 8 27995291 27995291 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ELP3 NM_018091 exon10 c.982delC p.L328fs . . 111.0 10.0 153.0 0.0 . 36 . . Atlas-INDEL DNAH12 201625 hgsc.bcm.edu hg19 3 57399487 57399487 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DNAH12 NM_178504 exon39 c.5950delG p.D1984fs . . 270.0 20.0 192.0 0.0 . 182 . . Atlas-INDEL GDAP1L1 78997 hgsc.bcm.edu hg19 20 42907863 42907863 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 GDAP1L1,colon,carcinoma,0,1 GDAP1L1 NM_001256737 exon6 c.1083delC p.F361fs . . 164.0 10.0 162.0 0.0 . 36 . . Atlas-INDEL PRUNE2 158471 hgsc.bcm.edu hg19 9 79465566 79465566 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRUNE2 NM_015225 exon3 c.158delT p.V53fs . . 153.0 10.0 148.0 0.0 . 331 . . Atlas-INDEL KIAA0355 9710 hgsc.bcm.edu hg19 19 34832378 34832378 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KIAA0355 NM_014686 exon10 c.1538delA p.D513fs . . 178.0 12.0 152.0 0.0 . 105 . . Atlas-INDEL USP9X 8239 hgsc.bcm.edu hg19 X 41069767 41069767 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . USP9X NM_001039591 exon33 c.5020delT p.W1674fs . . 148.0 11.0 145.0 0.0 . 385 . . Atlas-INDEL WDR64 128025 hgsc.bcm.edu hg19 1 241875143 241875143 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . WDR64 NM_144625 exon8 c.983delC p.T328fs . . 194.0 15.0 92.0 0.0 . 234 . . Atlas-INDEL SNRPN 6638 hgsc.bcm.edu hg19 15 25221497 25221497 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SNRPN NM_022807 exon9 c.200delT p.L67fs . . 128.0 10.0 86.0 0.0 . 58 . . Atlas-INDEL SLFN12L 100506736 hgsc.bcm.edu hg19 17 33806378 33806378 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLFN12L NM_001195790 exon2 c.852delT p.N284fs . . 157.0 10.0 140.0 0.0 . 140 . . Atlas-INDEL SNAPC1 6617 hgsc.bcm.edu hg19 14 62245598 62245598 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SNAPC1 NM_003082 exon7 c.794delT p.I265fs . . 186.0 12.0 152.0 0.0 . 32 . . Atlas-INDEL C11orf30 56946 hgsc.bcm.edu hg19 11 76257129 76257129 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C11orf30 NM_020193 exon20 c.3561delA p.L1187fs . . 178.0 11.0 139.0 0.0 . 123 . . Atlas-INDEL OBSCN 84033 hgsc.bcm.edu hg19 1 228430955 228430955 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OBSCN NM_001271223 exon11 c.3276delC p.A1092fs . . 216.0 13.0 112.0 0.0 . 2142 . . Atlas-INDEL RBM43 375287 hgsc.bcm.edu hg19 2 152107917 152107917 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RBM43 NM_198557 exon4 c.578delA p.Q193fs . . 231.0 14.0 226.0 0.0 . 35 . . Atlas-INDEL ATP2A2 488 hgsc.bcm.edu hg19 12 110720572 110720572 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATP2A2 NM_001681 exon3 c.190delA p.I64fs . . 156.0 11.0 104.0 0.0 . 78 . . Atlas-INDEL KAT6A 7994 hgsc.bcm.edu hg19 8 41832291 41832291 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_006766 exon8 c.1414delG p.G472fs . . 182.0 12.0 215.0 0.0 . . . . Atlas-INDEL BPTF 2186 hgsc.bcm.edu hg19 17 65955903 65955903 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BPTF NM_182641 exon24 c.8172delG p.K2724fs . . 178.0 12.0 112.0 0.0 . 415 . . Atlas-INDEL MED13 9969 hgsc.bcm.edu hg19 17 60087940 60087940 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MED13 NM_005121 exon9 c.1939delG p.G647fs . . 170.0 12.0 119.0 0.0 . 181 . . Atlas-INDEL ACCSL 390110 hgsc.bcm.edu hg19 11 44077622 44077622 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACCSL NM_001031854 exon10 c.1171delT p.W391fs . . 188.0 12.0 97.0 0.0 . 57 . . Atlas-INDEL ASH1L 55870 hgsc.bcm.edu hg19 1 155307895 155307895 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ASH1L NM_018489 exon27 c.8789delT p.I2930fs . . 165.0 10.0 102.0 0.0 . 279 . . Atlas-INDEL DGKZ 8525 hgsc.bcm.edu hg19 11 46394213 46394213 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DGKZ NM_001105540 exon13 c.1620delC p.C540fs . . 132.0 10.0 51.0 0.0 . 199 . . Atlas-INDEL GATA1 2623 hgsc.bcm.edu hg19 X 48650547 48650547 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GATA1 NM_002049 exon3 c.516delC p.F172fs . . 142.0 11.0 116.0 0.0 . 342 . . Atlas-INDEL HMP19 0 hgsc.bcm.edu hg19 5 173473819 173473819 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HMP19 NM_015980 exon2 c.60delT p.D20fs . . 161.0 10.0 98.0 0.0 . 21 . . Atlas-INDEL ZNF184 7738 hgsc.bcm.edu hg19 6 27420023 27420023 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF184 NM_007149 exon6 c.1316delC p.T439fs . . 130.0 10.0 87.0 0.0 . 89 . . Atlas-INDEL RANBP3L 202151 hgsc.bcm.edu hg19 5 36270074 36270074 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RANBP3L NM_001161429 exon3 c.170delT p.L57fs . . 172.0 11.0 116.0 0.0 . 41 . . Atlas-INDEL SYNE2 23224 hgsc.bcm.edu hg19 14 64556329 64556329 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 SYNE2,NS,carcinoma,0,1 SYNE2 NM_182914 exon59 c.11707delG p.E3903fs . . 211.0 13.0 185.0 0.0 . 577 . . Atlas-INDEL PI4K2A 55361 hgsc.bcm.edu hg19 10 99426199 99426199 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PI4K2A NM_018425 exon7 c.1088delC p.P363fs . . 139.0 10.0 119.0 0.0 . 57 . . Atlas-INDEL XPO5 57510 hgsc.bcm.edu hg19 6 43496599 43496599 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . XPO5 NM_020750 exon24 c.2743delA p.I915fs . . 156.0 11.0 106.0 0.0 . 79 . . Atlas-INDEL MB21D2 151963 hgsc.bcm.edu hg19 3 192516280 192516280 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MB21D2 NM_178496 exon2 c.1372delC p.L458fs . . 197.0 14.0 147.0 0.0 . 75 . . Atlas-INDEL HSPG2 3339 hgsc.bcm.edu hg19 1 22168836 22168836 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HSPG2 NM_005529 exon68 c.8949delT p.P2983fs . . 174.0 11.0 113.0 0.0 . 311 . . Atlas-INDEL OR52B6 340980 hgsc.bcm.edu hg19 11 5602546 5602546 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR52B6 NM_001005162 exon1 c.439delT p.S147fs . . 157.0 11.0 102.0 0.0 . 37 . . Atlas-INDEL NT5DC2 64943 hgsc.bcm.edu hg19 3 52562508 52562508 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NT5DC2 NM_001134231 exon5 c.597delT p.G199fs . . 406.0 26.0 250.0 0.0 . 35 . . Atlas-INDEL HLF 3131 hgsc.bcm.edu hg19 17 53345191 53345191 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HLF NM_002126 exon2 c.194delT p.L65fs . . 145.0 10.0 96.0 0.0 . 39 . . Atlas-INDEL BZRAP1 9256 hgsc.bcm.edu hg19 17 56393388 56393388 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BZRAP1 NM_004758 exon16 c.2095delG p.E699fs . . 260.0 19.0 174.0 0.0 . 287 . . Atlas-INDEL MCM9 254394 hgsc.bcm.edu hg19 6 119238756 119238756 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MCM9 NM_017696 exon4 c.875delG p.W292fs . . 202.0 13.0 103.0 0.0 . 73 . . Atlas-INDEL BUB1 699 hgsc.bcm.edu hg19 2 111430402 111430402 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BUB1 NM_004336 exon4 c.259delG p.E87fs . . 123.0 10.0 124.0 0.0 . 91 . . Atlas-INDEL FMN1 342184 hgsc.bcm.edu hg19 15 33069072 33069072 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 FMN1_ENST00000334528,brain,glioma,0,2 FMN1 NM_001103184 exon16 c.3511delG p.V1171fs . . 142.0 10.0 150.0 0.0 . 174 . . Atlas-INDEL ZNF80 7634 hgsc.bcm.edu hg19 3 113955740 113955740 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF80 NM_007136 exon1 c.183delC p.N61fs . . 136.0 11.0 84.0 0.0 . 75 . . Atlas-INDEL LRBA 987 hgsc.bcm.edu hg19 4 151829842 151829842 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRBA NM_006726 exon10 c.1330delG p.V444fs . . 147.0 10.0 144.0 0.0 . 253 . . Atlas-INDEL EZH1 2145 hgsc.bcm.edu hg19 17 40860046 40860046 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EZH1 NM_001991 exon15 c.1591delT p.C531fs . . 161.0 10.0 98.0 0.0 . 62 . . Atlas-INDEL ITGB4 3691 hgsc.bcm.edu hg19 17 73746239 73746239 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ITGB4 NM_001005619 exon27 c.3363delA p.P1121fs . . 171.0 11.0 148.0 0.0 . 165 . . Atlas-INDEL TGM3 7053 hgsc.bcm.edu hg19 20 2291043 2291043 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TGM3 NM_003245 exon3 c.400delC p.L134fs . . 162.0 10.0 119.0 0.0 . 105 . . Atlas-INDEL MRGPRG 386746 hgsc.bcm.edu hg19 11 3239346 3239346 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MRGPRG NM_001164377 exon1 c.699delG p.P233fs . . 221.0 14.0 93.0 0.0 . 6 . . Atlas-INDEL BCAS1 8537 hgsc.bcm.edu hg19 20 52645367 52645367 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BCAS1 NM_003657 exon4 c.288delC p.F96fs . . 140.0 10.0 118.0 0.0 . 77 . . Atlas-INDEL CNEP1R1 255919 hgsc.bcm.edu hg19 16 50067341 50067341 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_153261 exon5 c.255delA p.P85fs . . 173.0 11.0 148.0 0.0 . . . . Atlas-INDEL EMR2 30817 hgsc.bcm.edu hg19 19 14884853 14884853 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EMR2 NM_001271052 exon3 c.97delT p.C33fs . . 178.0 12.0 144.0 0.0 . 99 . . Atlas-INDEL ZNF318 24149 hgsc.bcm.edu hg19 6 43320194 43320194 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF318 NM_014345 exon5 c.2692delC p.L898X . . 182.0 13.0 118.0 0.0 . 175 . . Atlas-INDEL SALL2 6297 hgsc.bcm.edu hg19 14 21991715 21991715 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SALL2 NM_005407 exon2 c.2148delC p.G716fs . . 115.0 11.0 86.0 0.0 . 95 . . Atlas-INDEL PSRC1 84722 hgsc.bcm.edu hg19 1 109824582 109824582 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PSRC1 NM_001032291 exon4 c.179delA p.Q60fs . . 165.0 11.0 74.0 0.0 . 12 . . Atlas-INDEL TANC2 26115 hgsc.bcm.edu hg19 17 61086972 61086972 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TANC2 NM_025185 exon1 c.51delT p.R17fs . . 161.0 10.0 111.0 0.0 . 266 . . Atlas-INDEL ZBTB11 27107 hgsc.bcm.edu hg19 3 101371772 101371772 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZBTB11 NM_014415 exon9 c.2321delG p.S774fs . . 189.0 12.0 115.0 0.0 . 77 . . Atlas-INDEL IGDCC3 9543 hgsc.bcm.edu hg19 15 65623433 65623433 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IGDCC3 NM_004884 exon9 c.1517delC p.A506fs . . 168.0 15.0 151.0 0.0 . 82 . . Atlas-INDEL SUPT20HL2 170067 hgsc.bcm.edu hg19 X 24329517 24329517 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_001136233 exon1 c.1917delC p.F639fs . . 210.0 13.0 144.0 0.0 . . . . Atlas-INDEL GPR97 222487 hgsc.bcm.edu hg19 16 57707239 57707239 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GPR97 NM_170776 exon2 c.64delG p.E22fs . . 165.0 11.0 168.0 0.0 . 74 . . Atlas-INDEL MYH8 4626 hgsc.bcm.edu hg19 17 10318665 10318665 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYH8 NM_002472 exon8 c.686delT p.L229fs . . 130.0 10.0 166.0 0.0 . 346 . . Atlas-INDEL DCDC2 51473 hgsc.bcm.edu hg19 6 24278359 24278359 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 DCDC2,colon,carcinoma,0,1 DCDC2 NM_001195610 exon8 c.841delG p.E281fs . . 230.0 16.0 148.0 0.0 . 53 . . Atlas-INDEL PTPRS 5802 hgsc.bcm.edu hg19 19 5231449 5231449 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PTPRS NM_002850 exon14 c.2028delG p.P676fs . . 102.0 10.0 89.0 0.0 . 169 . . Atlas-INDEL RPS6KA6 27330 hgsc.bcm.edu hg19 X 83374999 83374999 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RPS6KA6 NM_014496 exon9 c.684delG p.K228fs . . 166.0 10.0 165.0 0.0 . 116 . . Atlas-INDEL POLDIP3 84271 hgsc.bcm.edu hg19 22 42981894 42981894 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . POLDIP3 NM_032311 exon9 c.1170delT p.P390fs . . 121.0 10.0 130.0 0.0 . 58 . . Atlas-INDEL FAM117B 150864 hgsc.bcm.edu hg19 2 203621969 203621969 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FAM117B NM_173511 exon6 c.1137delA p.P379fs . . 295.0 19.0 222.0 0.0 . 73 . . Atlas-INDEL GDI2 2665 hgsc.bcm.edu hg19 10 5836890 5836890 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . GDI2 NM_001494 exon4 c.347delT p.I116fs . . 160.0 10.0 173.0 0.0 . 26 . . Atlas-INDEL SMC4 10051 hgsc.bcm.edu hg19 3 160131299 160131299 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SMC4 NM_005496 exon7 c.1018delC p.Q340fs . . 183.0 13.0 109.0 0.0 . 135 . . Atlas-INDEL TRAF3IP1 26146 hgsc.bcm.edu hg19 2 239237915 239237915 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 TRAF3IP1,right_upper_lobe,carcinoma,0,1 TRAF3IP1 NM_015650 exon5 c.846delG p.V282fs . . 152.0 12.0 100.0 0.0 . 58 . . Atlas-INDEL SDCBP2 27111 hgsc.bcm.edu hg19 20 1291473 1291473 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SDCBP2 NM_080489 exon8 c.796delA p.S266fs . . 193.0 12.0 195.0 0.0 . 78 . . Atlas-INDEL TRIM32 22954 hgsc.bcm.edu hg19 9 119461528 119461528 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRIM32 NM_012210 exon2 c.1506delA p.S502fs . . 171.0 11.0 161.0 0.0 . 67 . . Atlas-INDEL ANKRD12 23253 hgsc.bcm.edu hg19 18 9257212 9257212 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKRD12 NM_015208 exon9 c.3946delA p.I1316fs . . 134.0 10.0 142.0 0.0 . 167 . . Atlas-INDEL MMP19 4327 hgsc.bcm.edu hg19 12 56233389 56233389 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MMP19 NM_002429 exon5 c.658delC p.L220fs . . 180.0 12.0 184.0 0.0 . 61 . . Atlas-INDEL LRRFIP2 9209 hgsc.bcm.edu hg19 3 37149563 37149563 + Splice_Site DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRRFIP2 NM_006309 exon15 c.714+2G>- . . . 154.0 10.0 110.0 0.0 . 71 . . Atlas-INDEL FIG4 9896 hgsc.bcm.edu hg19 6 110098164 110098164 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FIG4 NM_014845 exon16 c.1789delG p.V597fs . . 200.0 12.0 155.0 0.0 . 77 . . Atlas-INDEL SORCS2 57537 hgsc.bcm.edu hg19 4 7716932 7716932 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SORCS2 NM_020777 exon17 c.2145delC p.S715fs . . 150.0 11.0 153.0 0.0 . 98 . . Atlas-INDEL SUCO 51430 hgsc.bcm.edu hg19 1 172571330 172571330 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . NM_014283 exon21 c.3144delT p.P1048fs . . 159.0 12.0 84.0 0.0 . . . . Atlas-INDEL POMT1 10585 hgsc.bcm.edu hg19 9 134390827 134390827 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . POMT1 NM_007171 exon13 c.1255delG p.A419fs . . 156.0 11.0 137.0 0.0 . 59 . . Atlas-INDEL CSDE1 7812 hgsc.bcm.edu hg19 1 115272999 115272999 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CSDE1 NM_001242891 exon13 c.1375delC p.L459fs . . 116.0 10.0 72.0 0.0 . 145 . . Atlas-INDEL PARP14 54625 hgsc.bcm.edu hg19 3 122423544 122423544 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PARP14 NM_017554 exon8 c.3488delC p.T1163fs . . 225.0 14.0 204.0 0.0 . 242 . . Atlas-INDEL ACAN 176 hgsc.bcm.edu hg19 15 89400592 89400592 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ACAN NM_001135 exon12 c.4775delG p.G1592fs . . 165.0 10.0 115.0 0.0 . 220 . . Atlas-INDEL IQCB1 9657 hgsc.bcm.edu hg19 3 121527845 121527845 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 IQCB1,NS,carcinoma,0,1 IQCB1 NM_001023571 exon6 c.406delG p.D136fs . . 221.0 14.0 181.0 0.0 . 50 . . Atlas-INDEL HSPA2 3306 hgsc.bcm.edu hg19 14 65008143 65008143 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 HSPA2,NS,carcinoma,0,1 HSPA2 NM_021979 exon1 c.575delC p.A192fs . . 162.0 10.0 133.0 0.0 . 83 . . Atlas-INDEL AKAP9 10142 hgsc.bcm.edu hg19 7 91726097 91726097 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 AKAP9_ENST00000356239,NS,carcinoma,0,2 AKAP9 NM_005751 exon41 c.9823delC p.Q3275fs . . 152.0 10.0 104.0 0.0 . 788 . . Atlas-INDEL ZFYVE16 9765 hgsc.bcm.edu hg19 5 79732785 79732785 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 ZFYVE16,colon,carcinoma,0,1 ZFYVE16 NM_001105251 exon4 c.280delG p.E94fs . . 263.0 16.0 125.0 0.0 . 100 . . Atlas-Indel,Pindel PSRC1 84722 hgsc.bcm.edu hg19 1 109823047 109823047 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PSRC1 NM_001032291 exon7 c.970delA p.R324fs . . 159.0 13.0 87.0 0.0 . 12 . . Atlas-INDEL ERAP2 64167 hgsc.bcm.edu hg19 5 96232481 96232481 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ERAP2 NM_001130140 exon9 c.1416delG p.E472fs . . 171.0 11.0 119.0 0.0 . 77 . . Atlas-INDEL SEL1L2 80343 hgsc.bcm.edu hg19 20 13899678 13899678 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SEL1L2 NM_001271539 exon4 c.376delC p.Q126fs . . 144.0 11.0 138.0 0.0 . 103 . . Atlas-INDEL MUC4 4585 hgsc.bcm.edu hg19 3 195511523 195511523 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MUC4 NM_018406 exon2 c.6929delC p.A2310fs . . 127.0 11.0 66.0 0.0 . 1505 . . Atlas-INDEL PCMTD1 115294 hgsc.bcm.edu hg19 8 52773460 52773460 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PCMTD1 NM_052937 exon2 c.253delC p.L85fs . . 202.0 15.0 93.0 0.0 . 73 . . Atlas-INDEL MYH14 79784 hgsc.bcm.edu hg19 19 50812903 50812903 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MYH14 NM_001145809 exon43 c.5966delG p.G1989fs . . 141.0 10.0 154.0 0.0 . 261 . . Atlas-INDEL SWT1 54823 hgsc.bcm.edu hg19 1 185175808 185175808 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SWT1 NM_017673 exon13 c.1884delT p.F628fs . . 176.0 11.0 109.0 0.0 . 88 . . Atlas-INDEL CHD2 1106 hgsc.bcm.edu hg19 15 93540530 93540530 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CHD2 NM_001271 exon30 c.3781delT p.W1261fs . . 161.0 11.0 159.0 0.0 . 280 . . Atlas-INDEL FZD6 8323 hgsc.bcm.edu hg19 8 104330820 104330820 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FZD6 NM_003506 exon3 c.179delA p.H60fs . . 299.0 18.0 98.0 0.0 . 61 . . Atlas-INDEL R3HDML 140902 hgsc.bcm.edu hg19 20 42979399 42979399 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . R3HDML NM_178491 exon5 c.728delA p.K243fs . . 245.0 16.0 227.0 0.0 . 33 . . Atlas-INDEL PLOD2 5352 hgsc.bcm.edu hg19 3 145804616 145804616 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLOD2 NM_182943 exon10 c.1086delA p.P362fs . . 159.0 10.0 114.0 0.0 . 81 . . Atlas-INDEL RALA 5898 hgsc.bcm.edu hg19 7 39745787 39745787 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RALA NM_005402 exon5 c.563delG p.G188fs . . 330.0 23.0 228.0 0.0 . 39 . . Atlas-INDEL PCYT1A 5130 hgsc.bcm.edu hg19 3 195968954 195968954 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PCYT1A NM_005017 exon8 c.574delG p.A192fs . . 132.0 10.0 82.0 0.0 . 34 . . Atlas-INDEL XRCC5 7520 hgsc.bcm.edu hg19 2 217057430 217057430 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . XRCC5 NM_021141 exon18 c.2012delT p.L671X . . 280.0 21.0 205.0 0.0 . 64 . . Atlas-INDEL SMG1 23049 hgsc.bcm.edu hg19 16 18841357 18841357 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SMG1 NM_015092 exon53 c.9025delG p.D3009fs . . 157.0 11.0 123.0 0.0 . 401 . . Atlas-INDEL PAFAH1B2 5049 hgsc.bcm.edu hg19 11 117038299 117038299 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PAFAH1B2 NM_002572 exon6 c.573delG p.M191fs . . 171.0 11.0 123.0 0.0 . 19 . . Atlas-INDEL USP37 57695 hgsc.bcm.edu hg19 2 219350428 219350428 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . USP37 NM_020935 exon16 c.1630delA p.K544fs . . 179.0 11.0 160.0 0.0 . 76 . . Atlas-INDEL USP21 27005 hgsc.bcm.edu hg19 1 161134345 161134345 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . USP21 NM_001014443 exon11 c.1326delG p.Q442fs . . 236.0 15.0 157.0 0.0 . 63 . . Atlas-INDEL HMGN4 10473 hgsc.bcm.edu hg19 6 26545644 26545644 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HMGN4 NM_006353 exon2 c.209delC p.A70fs . . 154.0 10.0 114.0 0.0 . 4 . . Atlas-INDEL ARHGAP29 9411 hgsc.bcm.edu hg19 1 94670628 94670628 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ARHGAP29 NM_004815 exon7 c.687delG p.K229fs . . 232.0 16.0 153.0 0.0 . 132 . . Atlas-INDEL ABCC9 10060 hgsc.bcm.edu hg19 12 22001144 22001144 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ABCC9 NM_005691 exon23 c.2807delC p.T936fs . . 187.0 12.0 328.0 0.0 . 411 . . Atlas-INDEL ZNF205 7755 hgsc.bcm.edu hg19 16 3163480 3163480 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ZNF205 NM_003456 exon2 c.48delA p.T16fs . . 162.0 10.0 119.0 0.0 . 42 . . Atlas-INDEL C9orf156 51531 hgsc.bcm.edu hg19 9 100672401 100672401 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C9orf156 NM_016481 exon4 c.908delC p.A303fs . . 181.0 12.0 141.0 0.0 . 35 . . Atlas-INDEL CPSF6 11052 hgsc.bcm.edu hg19 12 69652587 69652587 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CPSF6 NM_007007 exon6 c.911delG p.G304fs . . 133.0 11.0 79.0 0.0 . 96 . . Atlas-INDEL L3MBTL2 83746 hgsc.bcm.edu hg19 22 41620044 41620044 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . L3MBTL2 NM_031488 exon9 c.962delA p.Y321fs . . 197.0 12.0 150.0 0.0 . 61 . . Atlas-INDEL RPE65 6121 hgsc.bcm.edu hg19 1 68910348 68910348 + Frame_Shift_Del DEL A A - rs121918844 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . RPE65 NM_000329 exon5 c.362delC p.S121fs . . 169.0 13.0 80.0 0.0 . 87 . . Atlas-INDEL FANCM 57697 hgsc.bcm.edu hg19 14 45645902 45645902 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FANCM NM_020937 exon14 c.3944delC p.A1315fs . . 172.0 12.0 183.0 0.0 . 225 . . Atlas-INDEL EHMT2 10919 hgsc.bcm.edu hg19 6 31864543 31864543 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . EHMT2 NM_025256 exon3 c.169delG p.D57fs . . 161.0 10.0 97.0 0.0 . 45 . . Atlas-INDEL CCDC69 26112 hgsc.bcm.edu hg19 5 150563972 150563972 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCDC69 NM_015621 exon8 c.647delT p.I216fs . . 231.0 14.0 139.0 0.0 . 30 . . Atlas-INDEL MOB2 81532 hgsc.bcm.edu hg19 11 1492622 1492622 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MOB2 NM_001172223 exon4 c.394delA p.K132fs . . 177.0 12.0 132.0 0.0 . 23 . . Atlas-INDEL ITIH4 3700 hgsc.bcm.edu hg19 3 52860860 52860860 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ITIH4 NM_002218 exon4 c.467delT p.V156fs . . 196.0 12.0 143.0 0.0 . 74 . . Atlas-INDEL TOR1B 27348 hgsc.bcm.edu hg19 9 132571650 132571650 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TOR1B NM_014506 exon5 c.798delC p.D266fs . . 177.0 17.0 146.0 0.0 . 20 . . Atlas-INDEL TPR 7175 hgsc.bcm.edu hg19 1 186324639 186324639 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TPR NM_003292 exon17 c.2075delT p.I692fs . . 196.0 12.0 87.0 0.0 . 441 . . Atlas-INDEL OR7A17 26333 hgsc.bcm.edu hg19 19 14991635 14991635 + Frame_Shift_Del DEL A A - rs35659165 TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . OR7A17 NM_030901 exon1 c.534delC p.F178fs . . 155.0 10.0 127.0 0.0 . 37 . . Atlas-INDEL HEATR6 63897 hgsc.bcm.edu hg19 17 58124746 58124746 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HEATR6 NM_022070 exon18 c.2694delC p.F898fs . . 210.0 13.0 151.0 0.0 . 98 . . Atlas-INDEL LRRC16A 55604 hgsc.bcm.edu hg19 6 25619801 25619801 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRRC16A NM_017640 exon37 c.4105delA p.I1369fs . . 149.0 11.0 116.0 0.0 . 168 . . Atlas-INDEL KHDRBS2 202559 hgsc.bcm.edu hg19 6 62688078 62688078 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KHDRBS2 NM_152688 exon4 c.377delA p.H126fs . . 163.0 10.0 144.0 0.0 . 103 . . Atlas-INDEL SOBP 55084 hgsc.bcm.edu hg19 6 107956410 107956410 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SOBP NM_018013 exon6 c.2361delC p.A787fs . . 137.0 10.0 108.0 0.0 . 53 . . Atlas-INDEL CAPN11 11131 hgsc.bcm.edu hg19 6 44145022 44145022 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CAPN11 NM_007058 exon12 c.1280delA p.E427fs . . 174.0 11.0 121.0 0.0 . 66 . . Atlas-INDEL MYO7A 4647 hgsc.bcm.edu hg19 11 76867058 76867058 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 MYO7A NM_001127179 exon5 c.390delG p.M130fs . . 139.0 11.0 92.0 0.0 . 164 . . Atlas-INDEL AHNAK 79026 hgsc.bcm.edu hg19 11 62288216 62288216 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AHNAK NM_001620 exon5 c.13674delT p.P4558fs . . 202.0 13.0 126.0 0.0 . 532 . . Atlas-INDEL PLA2G2F 64600 hgsc.bcm.edu hg19 1 20465957 20465957 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLA2G2F NM_022819 exon1 c.36delC p.F12fs . . 146.0 10.0 87.0 0.0 . 28 . . Atlas-INDEL PTGR1 22949 hgsc.bcm.edu hg19 9 114355220 114355220 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PTGR1 NM_001146108 exon4 c.196delC p.Q66fs . . 153.0 10.0 118.0 0.0 . 23 . . Atlas-INDEL SOX2 6657 hgsc.bcm.edu hg19 3 181431499 181431499 + RNA DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SOX2 . . . . . . 146.0 10.0 117.0 0.0 . 28 . . Atlas-INDEL FGA 2243 hgsc.bcm.edu hg19 4 155507905 155507905 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FGA NM_000508 exon5 c.677delT p.M226fs . . 154.0 13.0 147.0 0.0 . 179 . . Atlas-INDEL SCN1A 6323 hgsc.bcm.edu hg19 2 166852565 166852565 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 SCN1A_ENST00000303395,caecum,carcinoma,0,2 SCN1A NM_001165963 exon24 c.4540delT p.L1514X . . 148.0 10.0 142.0 0.0 . 641 . . Atlas-INDEL IMPG2 50939 hgsc.bcm.edu hg19 3 101023118 101023118 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IMPG2 NM_016247 exon3 c.374delG p.W125fs . . 151.0 11.0 134.0 0.0 . 164 . . Atlas-INDEL BRAT1 221927 hgsc.bcm.edu hg19 7 2583461 2583461 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . BRAT1 NM_152743 exon5 c.567delT p.G189fs . . 163.0 10.0 116.0 0.0 . 57 . . Atlas-INDEL LEPROT 54741 hgsc.bcm.edu hg19 1 65897552 65897552 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LEPROT NM_001198681 exon5 c.372delG p.G124fs . . 205.0 13.0 110.0 0.0 . 16 . . Atlas-INDEL FLYWCH1 84256 hgsc.bcm.edu hg19 16 2979748 2979748 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FLYWCH1 NM_020912 exon3 c.61delT p.S21fs . . 142.0 12.0 128.0 0.0 . 27 . . Atlas-INDEL CCDC17 149483 hgsc.bcm.edu hg19 1 46088658 46088658 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCDC17 NM_001114938 exon4 c.626delC p.A209fs . . 188.0 13.0 97.0 0.0 . 54 . . Atlas-INDEL DOCK11 139818 hgsc.bcm.edu hg19 X 117749649 117749649 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DOCK11 NM_144658 exon30 c.3266delC p.A1089fs . . 200.0 13.0 162.0 0.0 . 185 . . Atlas-INDEL CCDC83 220047 hgsc.bcm.edu hg19 11 85622356 85622356 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CCDC83 NM_173556 exon8 c.704delT p.L235X . . 182.0 11.0 133.0 0.0 . 48 . . Atlas-INDEL LCA5 167691 hgsc.bcm.edu hg19 6 80197095 80197095 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LCA5 NM_001122769 exon8 c.1721delG p.S574fs . . 159.0 10.0 109.0 0.0 . 71 . . Atlas-INDEL IQSEC1 9922 hgsc.bcm.edu hg19 3 12942773 12942773 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IQSEC1 NM_001134382 exon15 c.3055delC p.L1019fs . . 183.0 11.0 133.0 0.0 . 88 . . Atlas-INDEL DHX8 1659 hgsc.bcm.edu hg19 17 41582118 41582118 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DHX8 NM_004941 exon12 c.1652delG p.G551fs . . 117.0 10.0 82.0 0.0 . 98 . . Atlas-INDEL LRCH3 84859 hgsc.bcm.edu hg19 3 197566229 197566229 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . LRCH3 NM_032773 exon10 c.1288delC p.Q430fs . . 155.0 11.0 96.0 0.0 . 96 . . Atlas-INDEL AEBP2 121536 hgsc.bcm.edu hg19 12 19667647 19667647 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . AEBP2 NM_001114176 exon7 c.1409delT p.L470X . . 163.0 10.0 194.0 0.0 . 21 . . Atlas-INDEL MARVELD3 91862 hgsc.bcm.edu hg19 16 71674880 71674880 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MARVELD3 NM_001017967 exon3 c.1182delG p.Q394fs . . 201.0 13.0 190.0 0.0 . 63 . . Atlas-INDEL CDH10 1008 hgsc.bcm.edu hg19 5 24487952 24487952 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDH10 NM_006727 exon12 c.2188delT p.Y730fs . . 132.0 10.0 80.0 0.0 . 391 . . Atlas-INDEL PRDX2 7001 hgsc.bcm.edu hg19 19 12911076 12911076 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PRDX2 NM_005809 exon4 c.296delG p.R99fs . . 227.0 15.0 251.0 0.0 . 20 . . Atlas-INDEL SEMG2 6407 hgsc.bcm.edu hg19 20 43851552 43851552 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SEMG2 NM_003008 exon2 c.1278delG p.Q426fs . . 158.0 10.0 107.0 0.0 . 92 . . Atlas-INDEL NPY1R 4886 hgsc.bcm.edu hg19 4 164246487 164246487 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NPY1R NM_000909 exon3 c.1124delT p.I375fs . . 191.0 12.0 204.0 0.0 . 72 . . Atlas-INDEL PLK4 10733 hgsc.bcm.edu hg19 4 128814719 128814719 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PLK4 NM_014264 exon12 c.2373delG p.R791fs . . 169.0 13.0 126.0 0.0 . 65 . . Atlas-INDEL CNIH2 254263 hgsc.bcm.edu hg19 11 66050215 66050215 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CNIH2 NM_182553 exon3 c.161delT p.L54X . . 176.0 11.0 107.0 0.0 . 15 . . Atlas-INDEL CDHR4 389118 hgsc.bcm.edu hg19 3 49830724 49830724 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDHR4 NM_001007540 exon13 c.1645delG p.E549fs . . 107.0 10.0 52.0 0.0 . 37 . . Atlas-INDEL MAGEC3 139081 hgsc.bcm.edu hg19 X 140967163 140967163 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MAGEC3 NM_138702 exon3 c.460delC p.L154fs . . 193.0 12.0 175.0 0.0 . 228 . . Atlas-INDEL MLL4 8085 hgsc.bcm.edu hg19 19 36223328 36223328 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MLL4 NM_014727 exon28 c.5877delT p.A1959fs . . 166.0 10.0 160.0 0.0 . 229 . . Atlas-INDEL PARPBP 55010 hgsc.bcm.edu hg19 12 102589882 102589882 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PARPBP NM_017915 exon11 c.1552delG p.E518fs . . 210.0 14.0 138.0 0.0 . 40 . . Atlas-INDEL NT5DC1 221294 hgsc.bcm.edu hg19 6 116565118 116565118 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . NT5DC1 NM_152729 exon12 c.1298delC p.S433X . . 255.0 17.0 191.0 0.0 . 32 . . Atlas-INDEL ATF7IP2 80063 hgsc.bcm.edu hg19 16 10551340 10551340 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ATF7IP2 NM_024997 exon7 c.1305delT p.S435fs . . 139.0 10.0 140.0 0.0 . 40 . . Atlas-INDEL KDM2B 84678 hgsc.bcm.edu hg19 12 122018773 122018773 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . KDM2B NM_032590 exon1 c.45delA p.P15fs . . 224.0 14.0 172.0 0.0 . 218 . . Atlas-INDEL ANKRD12 23253 hgsc.bcm.edu hg19 18 9279634 9279634 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ANKRD12 NM_015208 exon12 c.5994delC p.D1998fs . . 216.0 14.0 173.0 0.0 . 167 . . Atlas-INDEL HMGCS2 3158 hgsc.bcm.edu hg19 1 120301762 120301762 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . HMGCS2 NM_005518 exon4 c.830delT p.I277fs . . 197.0 13.0 140.0 0.0 . 58 . . Atlas-Indel,Pindel IL9R 3581 hgsc.bcm.edu hg19 X 155239775 155239775 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . IL9R NM_002186 exon9 c.1266delT p.A422fs . . 157.0 10.0 114.0 0.0 . 73 . . Atlas-INDEL DGKA 1606 hgsc.bcm.edu hg19 12 56346858 56346858 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DGKA NM_201554 exon22 c.1976delT p.L659fs . . 149.0 10.0 180.0 0.0 . 70 . . Atlas-INDEL TRAF3 7187 hgsc.bcm.edu hg19 14 103371834 103371834 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . TRAF3 NM_145725 exon12 c.1419delG p.L473fs . . 177.0 11.0 154.0 0.0 . 60 . . Atlas-INDEL KIAA1715 80856 hgsc.bcm.edu hg19 2 176804341 176804341 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 KIAA1715,caecum,carcinoma,-1,1 KIAA1715 NM_030650 exon10 c.752delG p.R251fs . . 200.0 12.0 184.0 0.0 . 61 . . Atlas-INDEL DSCAML1 57453 hgsc.bcm.edu hg19 11 117306420 117306420 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . DSCAML1 NM_020693 exon27 c.4997delT p.V1666fs . . 144.0 10.0 86.0 0.0 . 286 . . Atlas-INDEL CD163L1 283316 hgsc.bcm.edu hg19 12 7527201 7527201 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CD163L1 NM_174941 exon13 c.3247delT p.F1083fs . . 163.0 10.0 218.0 0.0 . 238 . . Atlas-INDEL MMP17 4326 hgsc.bcm.edu hg19 12 132335715 132335715 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . MMP17 NM_016155 exon10 c.1707delT p.S569fs . . 152.0 10.0 81.0 0.0 . 77 . . Atlas-INDEL SGCE 8910 hgsc.bcm.edu hg19 7 94232644 94232644 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SGCE NM_001099401 exon6 c.784delT p.F262fs . . 166.0 12.0 142.0 0.0 . 68 . . Atlas-INDEL PAPD5 64282 hgsc.bcm.edu hg19 16 50257145 50257145 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . PAPD5 NM_001040284 exon8 c.1182delA p.E394fs . . 163.0 11.0 147.0 0.0 . 57 . . Atlas-INDEL FERMT2 10979 hgsc.bcm.edu hg19 14 53326414 53326414 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . FERMT2 NM_001135000 exon15 c.1768delG p.E590fs . . 269.0 18.0 229.0 0.0 . 59 . . Atlas-INDEL SLFN13 146857 hgsc.bcm.edu hg19 17 33772591 33772591 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . SLFN13 NM_144682 exon3 c.110delC p.T37fs . . 174.0 11.0 188.0 0.0 . 79 . . Atlas-INDEL TENM3 55714 hgsc.bcm.edu hg19 4 183713573 183713573 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 . NM_001080477 exon25 c.5747delA p.N1916fs . . 175.0 11.0 139.0 0.0 . . . . Atlas-INDEL HLA-G 3135 hgsc.bcm.edu hg19 6 29797196 29797196 + Frame_Shift_Del DEL C C - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 .,1 HLA-G NM_002127 exon5 c.620delA p.D207fs . . 227.0 10.0 150.0 0.0 . 90 . . Pindel PIPSL 266971 hgsc.bcm.edu hg19 10 95720426 95720426 + RNA DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . . . . . . . . 224.0 10.0 195.0 0.0 . . . . Pindel C7orf61 402573 hgsc.bcm.edu hg19 7 100061288 100061288 + Frame_Shift_Del DEL T T - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . C7orf61 NM_001004323 exon2 c.86delT p.I29fs . . 243.0 11.0 167.0 0.0 . 12 . . Pindel ESYT1 23344 hgsc.bcm.edu hg19 12 56531342 56531342 + Frame_Shift_Del DEL G G - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . ESYT1 NM_001184796 exon18 c.2027delT p.L676fs . . 141.0 10.0 100.0 0.0 . 84 . . Pindel CDC42 998 hgsc.bcm.edu hg19 1 22413358 22413358 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39Y-01A-11D-A20W-10 TCGA-DD-A39Y-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1f8cf411-5c5e-428b-b586-681ff7341d19 913c971b-4d3d-445d-92b6-feda7a575e32 . CDC42 NM_001039802 exon6 c.484delC p.Q162fs . . 97.0 22.0 47.0 0.0 . 26 . . Pindel