Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PLEKHG5 57449 hgsc.bcm.edu hg19 1 6529206 6529206 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee PLEKHG5_ENST00000377748,colon,carcinoma,0,1 PLEKHG5 NM_001265592 exon20 c.G2382A p.E794E CTCCTCCTCTTCC . 52.0 10.0 78.0 0.0 . 66 . . Atlas-SNP UTS2 10911 hgsc.bcm.edu hg19 1 7912998 7912998 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee UTS2_ENST00000361696,right_lower_lobe,carcinoma,0,1 UTS2 NM_006786 exon1 c.T66C p.P22P AAGGAGAGGAAGA . 120.0 5.0 192.0 0.0 . 18 . . Atlas-SNP NPPB 4879 hgsc.bcm.edu hg19 1 11917725 11917725 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NPPB NM_002521 exon3 c.T392C p.L131P CGCCTCAGCACTG . 95.0 4.0 129.0 0.0 . 24 . . Atlas-SNP PLEKHM2 23207 hgsc.bcm.edu hg19 1 16054156 16054156 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PLEKHM2 NM_015164 exon9 c.A1589G p.Q530R AGGCCCAGCTGTC . 99.0 4.0 175.0 0.0 . 94 . . Atlas-SNP USP48 84196 hgsc.bcm.edu hg19 1 22083078 22083078 + Missense_Mutation SNP T T C rs4253886 bycluster;byhapmap;alternate_allele TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . USP48 NM_001032730 exon3 c.A373G p.S125G AGTCACTACAAGT . 92.0 4.0 172.0 0.0 . 91 . T|1.000;|0.000 Atlas-SNP HSPG2 3339 hgsc.bcm.edu hg19 1 22202397 22202397 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HSPG2 NM_005529 exon24 c.A3142G p.S1048G CGGGGCTGGGCTC . 97.0 4.0 116.0 0.0 . 311 . . Atlas-SNP ARID1A 8289 hgsc.bcm.edu hg19 1 27057832 27057832 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ARID1A NM_006015 exon3 c.T1540C p.S514P CAGTCCTCTCAGC . 194.0 9.0 314.0 0.0 . 842 . . Atlas-SNP SERINC2 347735 hgsc.bcm.edu hg19 1 31905905 31905905 + Missense_Mutation SNP G G C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SERINC2 NM_001199038 exon10 c.G1132C p.V378L CAGCAGGTGGCAG . 117.0 8.0 138.0 0.0 . 44 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34191012 34191012 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CSMD2 NM_052896 exon17 c.T2513C p.L838P AGGTAGAGGTAGT . 133.0 6.0 182.0 0.0 . 946 . . Atlas-SNP RIMKLA 284716 hgsc.bcm.edu hg19 1 42865162 42865162 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RIMKLA NM_173642 exon2 c.A251G p.D84G ACAGTGACATCAC . 123.0 5.0 113.0 0.0 . 32 . . Atlas-SNP LEPRE1 64175 hgsc.bcm.edu hg19 1 43218242 43218242 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LEPRE1 NM_001146289 exon9 c.A1439G p.D480G TCGTGGTCAGAGA . 88.0 4.0 101.0 0.0 . 130 . . Atlas-SNP NRD1 4898 hgsc.bcm.edu hg19 1 52306079 52306079 + Missense_Mutation SNP T T A rs62648104 bycluster TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NRD1 NM_001101662 exon2 c.A449T p.E150V TCTTCCTCCACCT . 201.0 23.0 254.0 0.0 . 89 . T|0.024;A|0.976 Atlas-SNP ZFYVE9 9372 hgsc.bcm.edu hg19 1 52703754 52703754 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZFYVE9 NM_007323 exon4 c.A665G p.E222G AAACAGAGGGGAG . 98.0 4.0 80.0 0.0 . 131 . . Atlas-SNP FPGT 8790 hgsc.bcm.edu hg19 1 74670761 74670761 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FPGT NM_003838 exon4 c.A1030G p.T344A AAAGGAACATCAC . 87.0 4.0 103.0 0.0 . 77 . . Atlas-SNP CLCA2 9635 hgsc.bcm.edu hg19 1 86904780 86904780 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CLCA2 NM_006536 exon7 c.A1194G p.K398K TAAGAAAGGATTT . 88.0 4.0 136.0 0.0 . 102 . . Atlas-SNP GTF2B 2959 hgsc.bcm.edu hg19 1 89322918 89322918 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GTF2B NM_001514 exon6 c.A788G p.Q263R GATGCCTGTGAGG . 79.0 4.0 169.0 0.0 . 32 . . Atlas-SNP EVI5 7813 hgsc.bcm.edu hg19 1 93167745 93167745 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . EVI5 NM_005665 exon5 c.G724A p.G242S AGTAACCAACCTC . 91.0 4.0 151.0 0.0 . 94 . . Atlas-SNP GPSM2 29899 hgsc.bcm.edu hg19 1 109465167 109465167 + Silent SNP T T A rs79761186 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GPSM2 NM_013296 exon13 c.T1569A p.T523T AACAACTTCTTCC . 37.0 8.0 94.0 0.0 . 56 . . Atlas-SNP GPSM2 29899 hgsc.bcm.edu hg19 1 109465168 109465168 + Missense_Mutation SNP T T A rs201481482 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GPSM2 NM_013296 exon13 c.T1570A p.S524T ACAACTTCTTCCA . 37.0 8.0 95.0 0.0 . 56 . . Atlas-SNP CELSR2 1952 hgsc.bcm.edu hg19 1 109793709 109793709 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CELSR2 NM_001408 exon1 c.C1008T p.P336P CAGCCCCTCTGAA . 56.0 25.0 65.0 0.0 . 228 . . Atlas-SNP GNAI3 2773 hgsc.bcm.edu hg19 1 110134757 110134757 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GNAI3 NM_006496 exon8 c.T967C p.F323L ACTCACTTCACCT . 119.0 5.0 171.0 0.0 . 25 . . Atlas-SNP ALX3 257 hgsc.bcm.edu hg19 1 110607343 110607343 + Missense_Mutation SNP G G T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ALX3 NM_006492 exon2 c.C460A p.R154S TACGACGCTTCTT . 220.0 118.0 344.0 0.0 . 16 . . Atlas-SNP MAGI3 260425 hgsc.bcm.edu hg19 1 114196530 114196530 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MAGI3 NM_152900 exon15 c.T2519C p.V840A CAGAGGTCCCAGC . 86.0 5.0 89.0 0.0 . 181 . . Atlas-SNP MTMR11 10903 hgsc.bcm.edu hg19 1 149901687 149901687 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee MTMR11_ENST00000439741,NS,carcinoma,0,2 MTMR11 NM_001145862 exon16 c.G1769A p.R590H AGCCAACGAGAAG . 130.0 20.0 83.0 0.0 . 136 . . Atlas-SNP KPRP 448834 hgsc.bcm.edu hg19 1 152733725 152733725 + Missense_Mutation SNP G G C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee KPRP,colon,carcinoma,+1,2 KPRP NM_001025231 exon2 c.G1661C p.R554P CAGAGCGGAGGGG . 259.0 11.0 129.0 0.0 . 152 . . Atlas-SNP PGLYRP4 57115 hgsc.bcm.edu hg19 1 153317700 153317700 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PGLYRP4 NM_020393 exon4 c.C298T p.R100W GTTCCCGCAGTCT . 107.0 10.0 65.0 0.0 . 45 . . Atlas-SNP SMG5 23381 hgsc.bcm.edu hg19 1 156236144 156236144 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SMG5 NM_015327 exon12 c.A1283G p.E428G TCTTTCTCCACAG . 104.0 5.0 39.0 0.0 . 98 . . Atlas-SNP KLHL20 27252 hgsc.bcm.edu hg19 1 173720986 173720986 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KLHL20 NM_014458 exon4 c.T681C p.S227S TCGCAGTGAAGAA . 110.0 5.0 92.0 0.0 . 54 . . Atlas-SNP TNR 7143 hgsc.bcm.edu hg19 1 175323568 175323568 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TNR NM_003285 exon18 c.A3341G p.D1114G GTGGTGTCCTGTG . 88.0 4.0 103.0 0.0 . 399 . . Atlas-SNP RALGPS2 55103 hgsc.bcm.edu hg19 1 178854228 178854228 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RALGPS2 NM_152663 exon12 c.T922C p.S308P GGAGCGTCTCCAC . 97.0 4.0 115.0 0.0 . 69 . . Atlas-SNP AXDND1 126859 hgsc.bcm.edu hg19 1 179504037 179504037 + Missense_Mutation SNP G G C rs6425573 bycluster;by2hit2allele;byhapmap TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . AXDND1 NM_144696 exon25 c.G2971C p.E991Q GAAGAAGAACAAC . 146.0 12.0 166.0 0.0 . 142 . G|1.000;|0.000 Atlas-SNP KIAA1614 57710 hgsc.bcm.edu hg19 1 180905383 180905383 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KIAA1614 NM_020950 exon5 c.T2338C p.S780P CCTTCCTCCCTGC . 97.0 4.0 97.0 0.0 . 75 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181767537 181767537 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CACNA1E NM_001205293 exon48 c.T6509C p.L2170P CCCTCCTTTCCTA . 74.0 4.0 90.0 0.0 . 778 . . Atlas-SNP DHX9 1660 hgsc.bcm.edu hg19 1 182822524 182822524 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DHX9 NM_001357 exon5 c.T448C p.S150P TACTACTCAAGAA . 90.0 4.0 83.0 0.0 . 114 . . Atlas-SNP TROVE2 6738 hgsc.bcm.edu hg19 1 193060792 193060792 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TROVE2 NM_001042370 exon10 c.A1596G p.I532M CAAAATACCCTAC . 97.0 4.0 89.0 0.0 . 50 . . Atlas-SNP KCNT2 343450 hgsc.bcm.edu hg19 1 196295981 196295981 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KCNT2 NM_198503 exon19 c.T2142C p.Y714Y GAATCCATAGGCT . 78.0 4.0 89.0 0.0 . 243 . . Atlas-SNP NFASC 23114 hgsc.bcm.edu hg19 1 204978736 204978736 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NFASC NM_001005388 exon28 c.T3341C p.L1114P TTGGGCTTATGTG . 60.0 5.0 67.0 0.0 . 396 . . Atlas-SNP PLXNA2 5362 hgsc.bcm.edu hg19 1 208390746 208390746 + Silent SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PLXNA2 NM_025179 exon2 c.C522T p.R174R CTCAGAGCGCACA . 94.0 4.0 72.0 0.0 . 178 . . Atlas-SNP HHIPL2 79802 hgsc.bcm.edu hg19 1 222712068 222712068 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HHIPL2 NM_024746 exon5 c.T1499C p.V500A CCAGTGACTGACT . 117.0 5.0 150.0 0.0 . 122 . . Atlas-SNP NVL 4931 hgsc.bcm.edu hg19 1 224475603 224475603 + Missense_Mutation SNP G G T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee NVL,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 NVL NM_002533 exon14 c.C1668A p.F556L AACAATGAAATCA . 108.0 26.0 163.0 0.0 . 74 . . Atlas-SNP WDR26 80232 hgsc.bcm.edu hg19 1 224588733 224588733 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . WDR26 NM_025160 exon9 c.A1338G p.E446E ACTGTCTTCATGA . 78.0 5.0 79.0 0.0 . 104 . . Atlas-SNP SDCCAG8 10806 hgsc.bcm.edu hg19 1 243652338 243652338 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SDCCAG8 NM_006642 exon17 c.A2008G p.S670G AAGCACAGCCAGG . 122.0 5.0 105.0 0.0 . 73 . . Atlas-SNP OSR1 130497 hgsc.bcm.edu hg19 2 19552914 19552914 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . OSR1 NM_145260 exon2 c.T653C p.L218P TCTCGCAGGTGGT . 59.0 4.0 78.0 0.0 . 29 . . Atlas-SNP CEBPZ 10153 hgsc.bcm.edu hg19 2 37455988 37455988 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CEBPZ NM_005760 exon2 c.A348G p.K116K TACTTCTTTTTTG . 41.0 5.0 36.0 0.0 . 68 . . Atlas-SNP EPAS1 2034 hgsc.bcm.edu hg19 2 46611704 46611704 + Missense_Mutation SNP A A G rs371184501 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . EPAS1 NM_001430 exon16 c.A2518G p.T840A GAACTGACCAGAT . 96.0 4.0 100.0 0.0 . 83 . . Atlas-SNP SMYD5 10322 hgsc.bcm.edu hg19 2 73452974 73452974 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SMYD5 NM_006062 exon13 c.A1157G p.D386G AGGCTGATGAACC . 70.0 4.0 83.0 0.0 . 58 . . Atlas-SNP SEMA4F 10505 hgsc.bcm.edu hg19 2 74883799 74883799 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SEMA4F NM_001271662 exon2 c.A284G p.E95G CAGGGGAGAGACC . 88.0 4.0 109.0 0.0 . 89 . . Atlas-SNP KANSL3 55683 hgsc.bcm.edu hg19 2 97268497 97268497 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_001115016 exon18 c.C2252T p.A751V TGTGGGGCTGGTC . 89.0 4.0 113.0 0.0 . . . . Atlas-SNP BUB1 699 hgsc.bcm.edu hg19 2 111408295 111408295 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . BUB1 NM_004336 exon18 c.T2031C p.R677R GCTCAGACGAAGT . 101.0 5.0 110.0 0.0 . 91 . . Atlas-SNP MGAT5 4249 hgsc.bcm.edu hg19 2 135170467 135170467 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MGAT5 NM_002410 exon12 c.G1558A p.E520K CCTTACGAGGGCC . 231.0 28.0 250.0 0.0 . 84 . . Atlas-SNP BBS5 129880 hgsc.bcm.edu hg19 2 170349443 170349443 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . BBS5 NM_152384 exon6 c.A446G p.N149S TTCAGAACAAGCA . 89.0 4.0 91.0 0.0 . 27 . . Atlas-SNP HOXD4 3233 hgsc.bcm.edu hg19 2 177017387 177017387 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee .,1 HOXD4 NM_014621 exon2 c.C485T p.T162I CCTACACCCGGCA . 49.0 3.0 54.0 0.0 . 32 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179506015 179506015 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TTN NM_001267550 exon220 c.A40586G p.E13529G TTAGGTTCTTCTT . 67.0 4.0 82.0 0.0 . 18412 . . Atlas-SNP ITGA4 3676 hgsc.bcm.edu hg19 2 182358065 182358065 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ITGA4 NM_000885 exon11 c.A1167G p.G389G TATCGGAGCTCCA . 86.0 4.0 76.0 0.0 . 142 . . Atlas-SNP GTF3C3 9330 hgsc.bcm.edu hg19 2 197634689 197634689 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GTF3C3 NM_012086 exon16 c.C2335T p.H779Y CCATATGAATAAA . 90.0 17.0 99.0 0.0 . 96 . . Atlas-SNP CPS1 1373 hgsc.bcm.edu hg19 2 211476885 211476885 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CPS1 NM_001122633 exon21 c.T2454C p.A818A GAAAGCTTTACGG . 97.0 4.0 81.0 0.0 . 485 . . Atlas-SNP ERBB4 2066 hgsc.bcm.edu hg19 2 212295715 212295715 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ERBB4 NM_001042599 exon21 c.A2598G p.R866R CAAGAGTCTGGCT . 115.0 5.0 134.0 0.0 . 480 . . Atlas-SNP TNS1 7145 hgsc.bcm.edu hg19 2 218713178 218713178 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TNS1 NM_022648 exon17 c.T1687C p.S563P TGGCAGACTCGTA . 125.0 5.0 114.0 0.0 . 251 . . Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220333960 220333960 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SPEG NM_005876 exon13 c.C3574T p.R1192W TTCCTGCGGCCAC . 169.0 58.0 174.0 0.0 . 272 . . Atlas-SNP SLC6A1 6529 hgsc.bcm.edu hg19 3 11064104 11064104 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC6A1 NM_003042 exon7 c.T664C p.W222R ATCGCCTGGATCC . 143.0 6.0 133.0 0.0 . 88 . . Atlas-SNP NKIRAS1 28512 hgsc.bcm.edu hg19 3 23942421 23942421 + Missense_Mutation SNP G G C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NKIRAS1 NM_020345 exon4 c.C214G p.P72A GCTTTGGCAGCTC . 155.0 19.0 130.0 0.0 . 18 . . Atlas-SNP TOPAZ1 375337 hgsc.bcm.edu hg19 3 44362570 44362570 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee C3orf77_ENST00000309765,NS,carcinoma,0,1 . NM_001145030 exon17 c.T4358C p.V1453A TGGATGTGCTTAA . 71.0 3.0 76.0 0.0 . . . . Atlas-SNP LTF 4057 hgsc.bcm.edu hg19 3 46501284 46501284 + Silent SNP C C T rs76787706 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LTF NM_002343 exon2 c.G69A p.R23R AACACTCCTCCTA . 145.0 7.0 181.0 0.0 . 98 . . Atlas-SNP APEH 327 hgsc.bcm.edu hg19 3 49713569 49713569 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . APEH NM_001640 exon6 c.T523C p.S175P GCCGAGTCCTTCT . 91.0 6.0 86.0 0.0 . 45 . . Atlas-SNP PARP3 10039 hgsc.bcm.edu hg19 3 51978115 51978115 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PARP3 NM_001003931 exon3 c.A215G p.D72G ATGAGGACTACAA . 97.0 6.0 107.0 0.0 . 90 . . Atlas-SNP DNAH1 25981 hgsc.bcm.edu hg19 3 52395766 52395766 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DNAH1 NM_015512 exon30 c.A4964G p.K1655R TCCAGAAGGCGCA . 173.0 7.0 173.0 0.0 . 534 . . Atlas-SNP KIAA1407 57577 hgsc.bcm.edu hg19 3 113684024 113684024 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KIAA1407 NM_020817 exon17 c.A2789G p.K930R CTTGTCTTACTCA . 86.0 4.0 116.0 0.0 . 80 . . Atlas-SNP STXBP5L 9515 hgsc.bcm.edu hg19 3 120941904 120941904 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . STXBP5L NM_014980 exon11 c.A1011G p.R337R TAGAAGACCAAGT . 114.0 5.0 132.0 0.0 . 159 . . Atlas-SNP H1FX 8971 hgsc.bcm.edu hg19 3 129034735 129034735 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . H1FX NM_006026 exon1 c.A11G p.E4G TCGAGCTCCACGG . 55.0 5.0 77.0 0.0 . 13 . . Atlas-SNP RASA2 5922 hgsc.bcm.edu hg19 3 141305546 141305546 + Nonsense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RASA2 NM_006506 exon19 c.C1885T p.R629X AAGAAACGATGGT . 150.0 7.0 149.0 0.0 . 169 . . Atlas-SNP NMD3 51068 hgsc.bcm.edu hg19 3 160968077 160968077 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NMD3 NM_015938 exon15 c.A1344G p.E448E TGAAGAAGATGAG . 69.0 4.0 69.0 0.0 . 49 . . Atlas-SNP SLITRK3 22865 hgsc.bcm.edu hg19 3 164907099 164907099 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLITRK3 NM_014926 exon2 c.A1520G p.K507R AGCAGCTTCAAGT . 88.0 4.0 89.0 0.0 . 263 . . Atlas-SNP YEATS2 55689 hgsc.bcm.edu hg19 3 183472104 183472104 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . YEATS2 NM_018023 exon11 c.A1341G p.S447S TGAGTCACCTGGA . 81.0 4.0 76.0 0.0 . 111 . . Atlas-SNP TBCCD1 55171 hgsc.bcm.edu hg19 3 186282013 186282013 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TBCCD1 NM_001134415 exon2 c.A106G p.I36V TGGATATCTTCCT . 78.0 4.0 92.0 0.0 . 42 . . Atlas-SNP GAK 2580 hgsc.bcm.edu hg19 4 864601 864601 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GAK NM_005255 exon19 c.A2146G p.S716G CCCGGCTCGGCCT . 92.0 4.0 112.0 0.0 . 104 . . Atlas-SNP WHSC1 7468 hgsc.bcm.edu hg19 4 1932357 1932357 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . WHSC1 NM_133335 exon6 c.T1415C p.V472A AGGTGGTAGCTGA . 91.0 4.0 112.0 0.0 . 180 . . Atlas-SNP WDR19 57728 hgsc.bcm.edu hg19 4 39191330 39191330 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . WDR19 NM_025132 exon4 c.T219C p.A73A GATTGCTGAGAAA . 103.0 5.0 152.0 0.0 . 96 . . Atlas-SNP GNPDA2 132789 hgsc.bcm.edu hg19 4 44705132 44705132 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GNPDA2 NM_138335 exon7 c.T797C p.V266A GGATCCACAAGTT . 61.0 4.0 74.0 0.0 . 28 . . Atlas-SNP FIP1L1 81608 hgsc.bcm.edu hg19 4 54325504 54325504 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FIP1L1 NM_030917 exon18 c.A1673G p.D558G AAGGAGATAGTCA . 83.0 4.0 85.0 0.0 . 60 . . Atlas-SNP CEP135 9662 hgsc.bcm.edu hg19 4 56847463 56847463 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CEP135 NM_025009 exon13 c.T1697C p.L566P TTAGTCTTATGGA . 92.0 4.0 110.0 0.0 . 115 . . Atlas-SNP GRSF1 2926 hgsc.bcm.edu hg19 4 71691022 71691022 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GRSF1 NM_002092 exon8 c.T1384C p.S462P CGTGGGACCGATC . 81.0 5.0 154.0 0.0 . 35 . . Atlas-SNP PPEF2 5470 hgsc.bcm.edu hg19 4 76793207 76793207 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PPEF2 NM_006239 exon13 c.G1620A p.K540K GGTCACCTTGTTA . 99.0 4.0 126.0 0.0 . 108 . . Atlas-SNP PPEF2 5470 hgsc.bcm.edu hg19 4 76797570 76797570 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PPEF2 NM_006239 exon11 c.A1190G p.E397G TCTAGCTCCAGTT . 90.0 4.0 74.0 0.0 . 108 . . Atlas-SNP NAAA 27163 hgsc.bcm.edu hg19 4 76861242 76861242 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NAAA NM_014435 exon2 c.T283C p.F95L CGGTGAAGGGCTG . 105.0 5.0 132.0 0.0 . 26 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79353651 79353651 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FRAS1 NM_001166133 exon38 c.T5110C p.S1704P GAGGTGTCCCTGT . 118.0 5.0 145.0 0.0 . 779 . . Atlas-SNP MEPE 56955 hgsc.bcm.edu hg19 4 88767270 88767270 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MEPE NM_020203 exon4 c.A1250G p.N417S ATAGGAACCAAGC . 94.0 4.0 113.0 0.0 . 86 . . Atlas-SNP METAP1 23173 hgsc.bcm.edu hg19 4 99960538 99960538 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . METAP1 NM_015143 exon5 c.T354C p.S118S TGAATCTGAACAG . 75.0 4.0 72.0 0.0 . 40 . . Atlas-SNP NDST4 64579 hgsc.bcm.edu hg19 4 115856381 115856381 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NDST4 NM_022569 exon6 c.T1517C p.L506P ATTGTGAGAAAAA . 82.0 4.0 140.0 0.0 . 193 . . Atlas-SNP SYNPO2 171024 hgsc.bcm.edu hg19 4 119948231 119948231 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SYNPO2 NM_001128934 exon3 c.A707G p.D236G CACATGACAGGAT . 84.0 4.0 81.0 0.0 . 353 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126238284 126238284 + Missense_Mutation SNP G G T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FAT4 NM_024582 exon1 c.G718T p.V240L GTGACTGTGCAAG . 98.0 8.0 138.0 0.0 . 1752 . . Atlas-SNP ARHGAP10 79658 hgsc.bcm.edu hg19 4 148778702 148778702 + Splice_Site SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ARHGAP10 NM_024605 exon5 c.385-2A>G . ATTTGTAGGAAGA . 38.0 17.0 43.0 0.0 . 92 . . Atlas-SNP LRBA 987 hgsc.bcm.edu hg19 4 151727552 151727552 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LRBA NM_006726 exon33 c.A5389G p.T1797A TCTCTGTAATACT . 70.0 4.0 97.0 0.0 . 253 . . Atlas-SNP PDGFC 56034 hgsc.bcm.edu hg19 4 157693868 157693868 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PDGFC NM_016205 exon4 c.A673G p.K225E AAGCCTTGCCAAG . 68.0 4.0 95.0 0.0 . 46 . . Atlas-SNP GALNTL6 442117 hgsc.bcm.edu hg19 4 173930373 173930373 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GALNTL6 NM_001034845 exon11 c.A1416G p.G472G GCATGGAGCCACC . 92.0 5.0 136.0 0.0 . 102 . . Atlas-SNP TENM3 55714 hgsc.bcm.edu hg19 4 183575041 183575041 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_001080477 exon5 c.A1106G p.D369G CTGGAGACAATGG . 92.0 4.0 115.0 0.0 . . . . Atlas-SNP TRAPPC11 60684 hgsc.bcm.edu hg19 4 184589187 184589187 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_021942 exon5 c.A477G p.A159A GGCTGCAGCTTTA . 60.0 4.0 76.0 0.0 . . . . Atlas-SNP TERT 7015 hgsc.bcm.edu hg19 5 1293886 1293886 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TERT NM_001193376 exon2 c.T1115C p.M372T CCTGGCATCCAGG . 82.0 4.0 91.0 0.0 . 2594 . . Atlas-SNP LPCAT1 79888 hgsc.bcm.edu hg19 5 1467007 1467007 + Splice_Site SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LPCAT1 NM_024830 exon14 c.1279-2A>G . TACATCTGCAAGG . 98.0 4.0 107.0 0.0 . 70 . . Atlas-SNP ITGA2 3673 hgsc.bcm.edu hg19 5 52371092 52371092 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ITGA2 NM_002203 exon23 c.T2783C p.L928P TCAACCTCAAAAT . 99.0 4.0 89.0 0.0 . 211 . . Atlas-SNP DHX29 54505 hgsc.bcm.edu hg19 5 54570765 54570765 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DHX29 NM_019030 exon15 c.A2501G p.Q834R GCATGCTGAGTGC . 79.0 16.0 109.0 0.0 . 116 . . Atlas-SNP SKIV2L2 23517 hgsc.bcm.edu hg19 5 54603859 54603859 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee SKIV2L2,NS,carcinoma,0,1 SKIV2L2 NM_015360 exon1 c.A18G p.G6G ATTCGGAGATGAG . 120.0 7.0 132.0 1.0 . 104 . . Atlas-SNP PDE4D 5144 hgsc.bcm.edu hg19 5 58270500 58270500 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PDE4D NM_001104631 exon15 c.T2421C p.P807P CGTGTCAGGAGAA . 131.0 6.0 122.0 0.0 . 345 . . Atlas-SNP CWC27 10283 hgsc.bcm.edu hg19 5 64079686 64079686 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CWC27 NM_005869 exon4 c.T276C p.R92R GTTGCGTTTTAAT . 91.0 4.0 62.0 0.0 . 47 . . Atlas-SNP MCCC2 64087 hgsc.bcm.edu hg19 5 70942047 70942047 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MCCC2 NM_022132 exon13 c.T1159C p.F387L ACTCACTTTGTCC . 91.0 4.0 94.0 0.0 . 47 . . Atlas-SNP COL4A3BP 10087 hgsc.bcm.edu hg19 5 74685511 74685511 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . COL4A3BP NM_001130105 exon13 c.T1574C p.V525A TCTTCAACCTTGA . 77.0 4.0 93.0 0.0 . 72 . . Atlas-SNP RASA1 5921 hgsc.bcm.edu hg19 5 86659274 86659274 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RASA1 NM_002890 exon11 c.T1563C p.D521D AATAGATCTCAGT . 69.0 4.0 83.0 0.0 . 213 . . Atlas-SNP CCNH 902 hgsc.bcm.edu hg19 5 86703825 86703825 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CCNH NM_001239 exon4 c.A493G p.R165G ATGGTCTGTAAGG . 82.0 4.0 96.0 0.0 . 40 . . Atlas-SNP KIAA0825 285600 hgsc.bcm.edu hg19 5 93807341 93807341 + Silent SNP C C A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KIAA0825 NM_001145678 exon9 c.G1551T p.V517V GGCCTCCACCAAG . 173.0 13.0 150.0 0.0 . 172 . . Atlas-SNP ETF1 2107 hgsc.bcm.edu hg19 5 137844500 137844500 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ETF1 NM_004730 exon10 c.A1089G p.G363G TTCCTGTCCGGTC . 69.0 4.0 85.0 0.0 . 38 . . Atlas-SNP DND1 373863 hgsc.bcm.edu hg19 5 140052948 140052948 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DND1 NM_194249 exon2 c.A50G p.E17G TTGTTCTCTGGAT . 103.0 5.0 91.0 0.0 . 15 . . Atlas-SNP PCDHAC2 56134 hgsc.bcm.edu hg19 5 140389506 140389506 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PCDHAC2 NM_018899 exon4 c.A3008G p.D1003G CGACTGACAACAG . 91.0 4.0 73.0 0.0 . 142 . . Atlas-SNP PCDHB15 56121 hgsc.bcm.edu hg19 5 140626124 140626124 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PCDHB15 NM_018935 exon1 c.A978G p.G326G CGGGGGACTTTCT . 207.0 9.0 210.0 0.0 . 138 . . Atlas-SNP PCDHGB3 56102 hgsc.bcm.edu hg19 5 140750296 140750296 + Missense_Mutation SNP A A G rs73265845 bycluster;by1000genomes;alternate_allele TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PCDHGB3 NM_018924 exon1 c.A335G p.K112R CTGAAAAGCCTTT . 68.0 4.0 66.0 0.0 . 168 . A|0.993;T|0.007 Atlas-SNP PCDHGB3 56102 hgsc.bcm.edu hg19 5 140750845 140750845 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PCDHGB3 NM_018924 exon1 c.A884G p.D295G AGCTGGACAGTAA . 98.0 32.0 85.0 0.0 . 168 . . Atlas-SNP WWC1 23286 hgsc.bcm.edu hg19 5 167881041 167881041 + Missense_Mutation SNP A A G rs140933524 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . WWC1 NM_015238 exon18 c.A2594G p.E865G AGGAGGAGGGAGA . 151.0 12.0 167.0 0.0 . 98 . . Atlas-SNP STK10 6793 hgsc.bcm.edu hg19 5 171509502 171509502 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . STK10 NM_005990 exon12 c.A1817G p.K606R AACTTCTTCTTGG . 100.0 4.0 88.0 0.0 . 100 . . Atlas-SNP TRIM7 81786 hgsc.bcm.edu hg19 5 180622632 180622632 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TRIM7 NM_203293 exon7 c.T1070C p.L357P AGAGAGAGGATGA . 121.0 5.0 114.0 0.0 . 56 . . Atlas-SNP RIOK1 83732 hgsc.bcm.edu hg19 6 7405539 7405539 + Missense_Mutation SNP T T C rs373917793 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RIOK1 NM_031480 exon12 c.T1154C p.V385A AATTTGTCACAGA . 100.0 4.0 93.0 0.0 . 36 . . Atlas-SNP ACOT13 55856 hgsc.bcm.edu hg19 6 24698153 24698153 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ACOT13 NM_018473 exon2 c.A124G p.M42V TGTGAAATGAAAG . 90.0 34.0 103.0 0.0 . 12 . . Atlas-SNP PPP1R18 170954 hgsc.bcm.edu hg19 6 30653159 30653159 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_001134870 exon2 c.A637G p.S213G TGGGGCTTTGCTC . 115.0 5.0 114.0 0.0 . . . . Atlas-SNP EHMT2 10919 hgsc.bcm.edu hg19 6 31847967 31847967 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . EHMT2 NM_006709 exon28 c.A3527G p.K1176R GAGTGCTTGCACT . 119.0 5.0 107.0 0.0 . 45 . . Atlas-SNP SLC39A7 7922 hgsc.bcm.edu hg19 6 33169120 33169120 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC39A7 NM_006979 exon1 c.A98G p.D33G ATGACGACCTGCA . 132.0 6.0 113.0 0.0 . 32 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43153709 43153709 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CUL9 NM_015089 exon4 c.T767C p.L256P AGCTGCTTTTCTC . 111.0 6.0 96.0 0.0 . 248 . . Atlas-SNP TTBK1 84630 hgsc.bcm.edu hg19 6 43250734 43250734 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TTBK1 NM_032538 exon14 c.A2256G p.E752E AGAAGAAGAGGAG . 77.0 5.0 59.0 0.0 . 124 . . Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51524434 51524434 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee PKHD1,rectum,carcinoma,0,1 PKHD1 NM_138694 exon61 c.C10490T p.A3497V AATACAGCCAAGA . 84.0 4.0 97.0 0.0 . 927 . . Atlas-SNP OGFRL1 79627 hgsc.bcm.edu hg19 6 72003034 72003034 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . OGFRL1 NM_024576 exon2 c.A273G p.R91R AAAGAGAAGTTTT . 143.0 22.0 127.0 0.0 . 44 . . Atlas-SNP CD109 135228 hgsc.bcm.edu hg19 6 74516714 74516714 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CD109 NM_133493 exon25 c.T3108C p.S1036S TCATAGTGAGCTT . 67.0 4.0 102.0 0.0 . 170 . . Atlas-SNP FILIP1 27145 hgsc.bcm.edu hg19 6 76022124 76022124 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FILIP1 NM_015687 exon5 c.A3424G p.T1142A ACTGGGTTCCTCG . 47.0 5.0 76.0 0.0 . 173 . . Atlas-SNP ELOVL4 6785 hgsc.bcm.edu hg19 6 80635991 80635991 + Silent SNP G G T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee ELOVL4,NS,carcinoma,0,1 ELOVL4 NM_022726 exon2 c.C208A p.R70R GTTCTCGGTCCTT . 45.0 2.0 66.0 0.0 . 46 . . Atlas-SNP SMIM8 57150 hgsc.bcm.edu hg19 6 88046871 88046871 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee C6orf162,NS,carcinoma,0,1 . NM_001042493 exon3 c.T122C p.L41P CAGAGCTCTTCAT . 41.0 3.0 88.0 0.0 . . . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90440507 90440507 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MDN1 NM_014611 exon35 c.A5078G p.K1693R TTGGCCTTCATTC . 86.0 4.0 142.0 0.0 . 478 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90461216 90461216 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MDN1 NM_014611 exon23 c.A3161G p.E1054G TACGTCTCATCTA . 109.0 5.0 164.0 0.0 . 478 . . Atlas-SNP CDC40 51362 hgsc.bcm.edu hg19 6 110540651 110540651 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CDC40 NM_015891 exon11 c.T1175C p.V392A TCTTTGTGGCTGG . 86.0 4.0 114.0 0.0 . 39 . . Atlas-SNP CDC40 51362 hgsc.bcm.edu hg19 6 110540992 110540992 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CDC40 NM_015891 exon12 c.T1260C p.A420A GGGAGCTGTCAAC . 106.0 5.0 181.0 0.0 . 39 . . Atlas-SNP UTRN 7402 hgsc.bcm.edu hg19 6 144801024 144801024 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . UTRN NM_007124 exon25 c.A3413G p.Q1138R AGATGCAGGAATG . 50.0 5.0 55.0 0.0 . 327 . . Atlas-SNP STXBP5 134957 hgsc.bcm.edu hg19 6 147680286 147680286 + Missense_Mutation SNP G G T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . STXBP5 NM_001127715 exon23 c.G2372T p.R791L AATCCCGAGAAGC . 58.0 24.0 92.0 0.0 . 163 . . Atlas-SNP EZR 7430 hgsc.bcm.edu hg19 6 159190397 159190397 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . EZR NM_003379 exon11 c.G1305A p.R435R GCGCCTCCGCGCC . 34.0 4.0 45.0 0.0 . 44 . . Atlas-SNP MAP3K4 4216 hgsc.bcm.edu hg19 6 161455479 161455479 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MAP3K4 NM_006724 exon2 c.A341G p.K114R ATTTGAAAGGTGA . 67.0 4.0 104.0 0.0 . 364 . . Atlas-SNP PSMB1 5689 hgsc.bcm.edu hg19 6 170844336 170844336 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PSMB1 NM_002793 exon6 c.A698G p.E233G GTTTCCTCCCTGA . 147.0 6.0 252.0 0.0 . 12 . . Atlas-SNP TNRC18 84629 hgsc.bcm.edu hg19 7 5396833 5396833 + Silent SNP G G T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TNRC18 NM_001080495 exon16 c.C4908A p.L1636L CTTGGTGAGGGAG . 93.0 4.0 118.0 0.0 . 311 . . Atlas-SNP ANKMY2 57037 hgsc.bcm.edu hg19 7 16640522 16640522 + Missense_Mutation SNP T T A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ANKMY2 NM_020319 exon10 c.A1190T p.E397V TCAGCCTCTGGTT . 65.0 21.0 63.0 0.0 . 46 . . Atlas-SNP DFNA5 1687 hgsc.bcm.edu hg19 7 24749890 24749890 + Missense_Mutation SNP G G C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DFNA5 NM_001127453 exon6 c.C815G p.A272G CCATGCGCAGCAT . 67.0 13.0 59.0 0.0 . 51 . . Atlas-SNP PDE1C 5137 hgsc.bcm.edu hg19 7 31912954 31912954 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee PDE1C_ENST00000396193,bladder,carcinoma,0,3 PDE1C NM_001191058 exon7 c.T740C p.F247S AAAATAAATTTCA . 66.0 3.0 113.0 0.0 . 465 . . Atlas-SNP AVL9 23080 hgsc.bcm.edu hg19 7 32590989 32590989 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . AVL9 NM_015060 exon5 c.A416G p.H139R TTACACATGCATA . 68.0 4.0 85.0 0.0 . 66 . . Atlas-SNP VPS41 27072 hgsc.bcm.edu hg19 7 38869928 38869928 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . VPS41 NM_014396 exon5 c.A247G p.S83G CAGGACTCTAAAA . 80.0 4.0 81.0 0.0 . 102 . . Atlas-SNP AEBP1 165 hgsc.bcm.edu hg19 7 44150363 44150363 + Missense_Mutation SNP T T A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . AEBP1 NM_001129 exon12 c.T1440A p.N480K CAGCAATGACAGC . 92.0 27.0 119.0 0.0 . 102 . . Atlas-SNP FGL2 10875 hgsc.bcm.edu hg19 7 76826056 76826056 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FGL2 NM_006682 exon2 c.A860G p.D287G ATTTTATCGTTCC . 125.0 5.0 192.0 0.0 . 40 . . Atlas-SNP CCDC132 55610 hgsc.bcm.edu hg19 7 92952972 92952972 + Silent SNP T T A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CCDC132 NM_017667 exon21 c.T1905A p.V635V TGATGTTATTCAT . 39.0 9.0 59.0 0.0 . 136 . . Atlas-SNP TRRAP 8295 hgsc.bcm.edu hg19 7 98508787 98508787 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TRRAP NM_001244580 exon17 c.C1900T p.H634Y TTGGAGCATTTCG . 100.0 4.0 136.0 0.0 . 863 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100696684 100696684 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MUC17 NM_001040105 exon11 c.A13330G p.T4444A CCTGGGACCTTCC . 105.0 6.0 106.0 0.0 . 804 . . Atlas-SNP LRRC17 10234 hgsc.bcm.edu hg19 7 102575006 102575006 + Missense_Mutation SNP G G A rs80100722 bycluster TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LRRC17 NM_005824 exon2 c.G646A p.E216K GAAGAAGAAAAGG . 32.0 5.0 43.0 0.0 . 45 . . Atlas-SNP DLD 1738 hgsc.bcm.edu hg19 7 107533711 107533711 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DLD NM_000108 exon2 c.G106A p.A36T ACTTACGCAGATC . 65.0 4.0 78.0 0.0 . 72 . . Atlas-SNP LRRN3 54674 hgsc.bcm.edu hg19 7 110764889 110764889 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LRRN3 NM_018334 exon2 c.A2061G p.G687G AGCAGGAAAAGAA . 22.0 4.0 14.0 0.0 . 132 . . Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu hg19 7 121636505 121636505 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PTPRZ1 NM_001206838 exon9 c.A998G p.E333G CATGGGAAAGACC . 93.0 4.0 99.0 0.0 . 605 . . Atlas-SNP MKLN1 4289 hgsc.bcm.edu hg19 7 131084062 131084062 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MKLN1 NM_013255 exon6 c.A573G p.E191E TACAGAAGCTTTT . 100.0 4.0 120.0 0.0 . 67 . . Atlas-SNP CLCN1 1180 hgsc.bcm.edu hg19 7 143043238 143043238 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CLCN1 NM_000083 exon18 c.T2178C p.P726P GCTTCCTCCTTCC . 113.0 5.0 153.0 0.0 . 141 . . Atlas-SNP LMBR1 64327 hgsc.bcm.edu hg19 7 156685632 156685632 + Missense_Mutation SNP C C A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LMBR1 NM_022458 exon1 c.G56T p.R19L GACTCCCGCACTT . 18.0 4.0 46.0 0.0 . 35 . . Atlas-SNP PXDNL 137902 hgsc.bcm.edu hg19 8 52287209 52287209 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PXDNL NM_144651 exon18 c.A3640G p.T1214A TAAGTGTTGGTCC . 56.0 4.0 52.0 0.0 . 414 . . Atlas-SNP NKAIN3 286183 hgsc.bcm.edu hg19 8 63492222 63492222 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee NKAIN3,caecum,carcinoma,0,1 NKAIN3 NM_173688 exon2 c.G179A p.R60Q GACCTCGATACAT . 61.0 3.0 46.0 0.0 . 32 . . Atlas-SNP TMEM67 91147 hgsc.bcm.edu hg19 8 94827602 94827602 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TMEM67 NM_153704 exon27 c.T2834C p.L945P ATCTGCTGTTCTT . 86.0 4.0 78.0 0.0 . 187 . . Atlas-SNP CDH17 1015 hgsc.bcm.edu hg19 8 95161099 95161099 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CDH17 NM_004063 exon14 c.T1800C p.Y600Y CAGTGAATAGCTT . 97.0 4.0 118.0 0.0 . 119 . . Atlas-SNP LRRC24 441381 hgsc.bcm.edu hg19 8 145748075 145748075 + Silent SNP T T C rs112652028 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LRRC24 NM_001024678 exon5 c.A1326G p.G442G CAGCGCTCCCTCC . 153.0 8.0 64.0 0.0 . 11 . T|0.986;G|0.014 Atlas-SNP SLC1A1 6505 hgsc.bcm.edu hg19 9 4490708 4490708 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC1A1 NM_004170 exon1 c.A29G p.E10G GATGCGAGTGGAA . 83.0 4.0 145.0 0.0 . 43 . . Atlas-SNP KIAA2026 158358 hgsc.bcm.edu hg19 9 5920644 5920644 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KIAA2026 NM_001017969 exon8 c.T5352C p.T1784T GAGTGAAGTCCGA . 89.0 5.0 140.0 0.0 . 231 . . Atlas-SNP IFNW1 3467 hgsc.bcm.edu hg19 9 21141108 21141108 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . IFNW1 NM_002177 exon1 c.G462A p.L154L CTCTTTCAGGTAG . 80.0 4.0 77.0 0.0 . 20 . . Atlas-SNP C9orf72 203228 hgsc.bcm.edu hg19 9 27548315 27548315 + Missense_Mutation SNP A A C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . C9orf72 NM_018325 exon11 c.T1365G p.I455M TGGTTTAATTTTC . 61.0 15.0 64.0 0.0 . 48 . . Atlas-SNP UNC13B 10497 hgsc.bcm.edu hg19 9 35378361 35378361 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . UNC13B NM_006377 exon16 c.T1886C p.V629A TGCAAGTCAGCAA . 93.0 4.0 109.0 0.0 . 153 . . Atlas-SNP RECK 8434 hgsc.bcm.edu hg19 9 36052297 36052297 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RECK NM_021111 exon2 c.A136G p.M46V AACCAAATGTGCC . 97.0 4.0 133.0 0.0 . 73 . . Atlas-SNP PCSK5 5125 hgsc.bcm.edu hg19 9 78790032 78790032 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PCSK5 NM_006200 exon14 c.A1887G p.T629T TGGCACAGAGGAT . 83.0 4.0 105.0 0.0 . 329 . . Atlas-SNP NTRK2 4915 hgsc.bcm.edu hg19 9 87475992 87475992 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NTRK2 NM_001018065 exon13 c.A1434G p.R478R ATCAAGACAAGGT . 92.0 4.0 131.0 0.0 . 331 . . Atlas-SNP SEMA4D 10507 hgsc.bcm.edu hg19 9 92020314 92020314 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SEMA4D NM_006378 exon5 c.A58G p.T20A TCGCTGTCCCAAA . 76.0 4.0 88.0 0.0 . 81 . . Atlas-SNP FAM22F 54754 hgsc.bcm.edu hg19 9 97080944 97080944 + Missense_Mutation SNP G G C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FAM22F NM_017561 exon7 c.C2074G p.P692A TGGCAGGAGAAGG . 326.0 17.0 352.0 0.0 . 72 . . Atlas-SNP SVEP1 79987 hgsc.bcm.edu hg19 9 113169740 113169740 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SVEP1 NM_153366 exon38 c.T8140C p.S2714P CAATTGAAATGCA . 131.0 7.0 109.0 0.0 . 326 . . Atlas-SNP C5 727 hgsc.bcm.edu hg19 9 123738976 123738976 + Splice_Site SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . C5 NM_001735 exon30 c.3864+2T>C . AATGTTACCTGGG . 80.0 4.0 95.0 0.0 . 124 . . Atlas-SNP C5 727 hgsc.bcm.edu hg19 9 123776212 123776212 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . C5 NM_001735 exon17 c.T2196C p.C732C GACGACACAACAT . 87.0 4.0 129.0 0.0 . 124 . . Atlas-SNP RAB14 51552 hgsc.bcm.edu hg19 9 123952841 123952841 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RAB14 NM_016322 exon4 c.A275G p.D92G GTGATATCATAGA . 70.0 4.0 72.0 0.0 . 14 . . Atlas-SNP OR1L6 392390 hgsc.bcm.edu hg19 9 125512279 125512279 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . OR1L6 NM_001004453 exon1 c.C153T p.Y51Y CATCTACTCTGAC . 228.0 45.0 311.0 0.0 . 31 . . Atlas-SNP HSPA5 3309 hgsc.bcm.edu hg19 9 128000515 128000515 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HSPA5 NM_005347 exon7 c.T1307C p.L436P GGAATCAGTTTGG . 69.0 4.0 77.0 0.0 . 41 . . Atlas-SNP GPSM1 26086 hgsc.bcm.edu hg19 9 139244074 139244074 + Nonsense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GPSM1 NM_001145638 exon11 c.G1314A p.W438X GGACTGGCGGGGG . 86.0 30.0 115.0 0.0 . 50 . . Atlas-SNP ABCA2 20 hgsc.bcm.edu hg19 9 139910249 139910249 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ABCA2 NM_212533 exon23 c.A3482G p.K1161R GACAGCTTGCGCT . 192.0 8.0 247.0 0.0 . 113 . . Atlas-SNP COMMD3-BMI1 0 hgsc.bcm.edu hg19 10 22616563 22616563 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee BMI1,NS,carcinoma,0,1 . NM_001204062 exon8 c.T678C p.V226V ATTAGTTCCAGGG . 41.0 3.0 66.0 0.0 . . . . Atlas-SNP ERCC6 2074 hgsc.bcm.edu hg19 10 50690818 50690818 + Missense_Mutation SNP C C A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ERCC6 NM_000124 exon10 c.G2084T p.C695F AACTTTCCCGGGA . 77.0 6.0 95.0 0.0 . 162 . . Atlas-SNP CDH23 64072 hgsc.bcm.edu hg19 10 73567345 73567345 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CDH23 NM_022124 exon57 c.A8381G p.E2794G ACCGGGAGCGAGA . 94.0 4.0 105.0 0.0 . 365 . . Atlas-SNP KAT6B 23522 hgsc.bcm.edu hg19 10 76602779 76602779 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_001256469 exon3 c.T164C p.V55A TCAGTGTTCAGGA . 101.0 5.0 101.0 0.0 . . . . Atlas-SNP KCNMA1 3778 hgsc.bcm.edu hg19 10 78832856 78832856 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KCNMA1 NM_001161352 exon14 c.A1748G p.K583R GTTACCTTTATGA . 99.0 5.0 124.0 0.0 . 370 . . Atlas-SNP POLR3A 11128 hgsc.bcm.edu hg19 10 79752965 79752965 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . POLR3A NM_007055 exon20 c.A2777G p.D926G ATGTTGTCCAGAA . 57.0 4.0 76.0 0.0 . 104 . . Atlas-SNP LDB3 11155 hgsc.bcm.edu hg19 10 88459081 88459081 + Missense_Mutation SNP C C T rs121908335 bycluster TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LDB3 NM_001171611 exon8 c.C1147T p.R383C AAATTGCGCAACT . 104.0 19.0 72.0 0.0 . 164 . . Atlas-SNP ATAD1 84896 hgsc.bcm.edu hg19 10 89550120 89550120 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ATAD1 NM_032810 exon4 c.C329T p.P110L TTGATAGGTAAGA . 79.0 25.0 80.0 0.0 . 32 . . Atlas-SNP PCGF5 84333 hgsc.bcm.edu hg19 10 93021180 93021180 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PCGF5 NM_001256549 exon7 c.A572G p.E191G CTTATGAGGTAAG . 82.0 4.0 101.0 0.0 . 29 . . Atlas-SNP CYP2C18 1562 hgsc.bcm.edu hg19 10 96447910 96447910 + Nonsense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CYP2C18 NM_000772 exon3 c.G360A p.W120X GAGATGGAAGGAG . 187.0 57.0 240.0 0.0 . 79 . . Atlas-SNP CNNM2 54805 hgsc.bcm.edu hg19 10 104679481 104679481 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CNNM2 NM_199076 exon1 c.T1244C p.L415P AACTGCTGGAGAT . 61.0 4.0 38.0 0.0 . 119 . . Atlas-SNP ADD3 120 hgsc.bcm.edu hg19 10 111883829 111883829 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ADD3 NM_001121 exon10 c.C1198T p.H400Y CCTAGGCACAAGA . 81.0 4.0 87.0 0.0 . 89 . . Atlas-SNP PLEKHA1 59338 hgsc.bcm.edu hg19 10 124189346 124189346 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PLEKHA1 NM_021622 exon12 c.A1107G p.K369K TTCCAAAGTGACT . 78.0 4.0 73.0 0.0 . 33 . . Atlas-SNP CUZD1 50624 hgsc.bcm.edu hg19 10 124595749 124595749 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CUZD1 NM_022034 exon6 c.T935C p.L312S TTTGATAATTTTG . 94.0 4.0 129.0 0.0 . 82 . . Atlas-SNP INPP5A 3632 hgsc.bcm.edu hg19 10 134563079 134563079 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . INPP5A NM_005539 exon10 c.T791C p.V264A AAGTGGTGAAGCT . 97.0 4.0 81.0 0.0 . 77 . . Atlas-SNP KRTAP5-1 387264 hgsc.bcm.edu hg19 11 1606421 1606421 + Missense_Mutation SNP C C G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KRTAP5-1 NM_001005922 exon1 c.G59C p.G20A CCACAGCCGGAGC . 145.0 62.0 190.0 0.0 . 74 . . Atlas-SNP CARS 833 hgsc.bcm.edu hg19 11 3059341 3059341 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CARS NM_001014437 exon7 c.A740G p.E247G AGTGGCTCTGTGG . 94.0 4.0 111.0 0.0 . 114 . . Atlas-SNP RRM1 6240 hgsc.bcm.edu hg19 11 4127341 4127341 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RRM1 NM_001033 exon3 c.T174C p.T58T AGATACTTTGGCT . 65.0 4.0 71.0 0.0 . 31 . . Atlas-SNP SBF2 81846 hgsc.bcm.edu hg19 11 9871706 9871706 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SBF2 NM_030962 exon22 c.A2670G p.R890R CAAGACTCGAAGA . 99.0 4.0 97.0 0.0 . 146 . . Atlas-SNP PDE3B 5140 hgsc.bcm.edu hg19 11 14666012 14666012 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PDE3B NM_000922 exon1 c.T391C p.F131L TTCTTCTTCCTCA . 100.0 4.0 139.0 0.0 . 98 . . Atlas-SNP GTF2H1 2965 hgsc.bcm.edu hg19 11 18373439 18373439 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GTF2H1 NM_001142307 exon11 c.A1065G p.Q355Q ATTACAAGAGTCC . 78.0 4.0 89.0 0.0 . 35 . . Atlas-SNP NAV2 89797 hgsc.bcm.edu hg19 11 20066708 20066708 + Missense_Mutation SNP C C G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NAV2 NM_001244963 exon15 c.C3463G p.L1155V GCCGGCCTGGCCA . 54.0 12.0 78.0 0.0 . 255 . . Atlas-SNP NAV2 89797 hgsc.bcm.edu hg19 11 20066858 20066858 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NAV2 NM_001244963 exon15 c.C3613T p.L1205L CTAGCCCTAAGCT . 98.0 4.0 139.0 0.0 . 255 . . Atlas-SNP ANO5 203859 hgsc.bcm.edu hg19 11 22271814 22271814 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ANO5 NM_213599 exon10 c.T910C p.F304L ATCTATTTTGTCT . 93.0 4.0 151.0 0.0 . 162 . . Atlas-SNP ANO3 63982 hgsc.bcm.edu hg19 11 26664762 26664762 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ANO3 NM_031418 exon23 c.C2309T p.A770V TTGTTGCGGCTTT . 137.0 41.0 171.0 0.0 . 145 . . Atlas-SNP FBXO3 26273 hgsc.bcm.edu hg19 11 33790501 33790501 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FBXO3 NM_012175 exon3 c.A254G p.D85G CCTACATCAGAGT . 64.0 4.0 110.0 0.0 . 37 . . Atlas-SNP NAT10 55226 hgsc.bcm.edu hg19 11 34158255 34158255 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NAT10 NM_024662 exon20 c.A2095G p.N699D AAATTGAATGAGA . 117.0 5.0 142.0 0.0 . 78 . . Atlas-SNP SPI1 6688 hgsc.bcm.edu hg19 11 47380449 47380449 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SPI1 NM_001080547 exon4 c.G442A p.D148N CGCCGTCAGACAC . 124.0 5.0 171.0 0.0 . 21 . . Atlas-SNP OR5I1 10798 hgsc.bcm.edu hg19 11 55702999 55702999 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee OR5I1,NS,chondrosarcoma,0,1 OR5I1 NM_006637 exon1 c.G878A p.S293N CTCAAACTATAAA . 49.0 2.0 81.0 0.0 . 110 . . Atlas-SNP SMTNL1 219537 hgsc.bcm.edu hg19 11 57310650 57310650 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SMTNL1 NM_001105565 exon1 c.A535G p.T179A GAGGAGACAGGCC . 77.0 4.0 91.0 0.0 . 68 . . Atlas-SNP BTBD18 643376 hgsc.bcm.edu hg19 11 57513286 57513286 + Silent SNP A A C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . BTBD18 NM_001145101 exon3 c.T459G p.S153S TCTGGCAGAGATT . 122.0 5.0 135.0 0.0 . 26 . . Atlas-SNP OR5A1 219982 hgsc.bcm.edu hg19 11 59211305 59211305 + Missense_Mutation SNP G G T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . OR5A1 NM_001004728 exon1 c.G664T p.G222C TCCTATGGTTACA . 135.0 24.0 201.0 0.0 . 72 . . Atlas-SNP PATL1 219988 hgsc.bcm.edu hg19 11 59415324 59415324 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee PATL1_ENST00000300146,NS,carcinoma,0,2 PATL1 NM_152716 exon15 c.G1796A p.R599H AGAATACGGGCAA . 76.0 4.0 96.0 0.0 . 92 . . Atlas-SNP SNX32 254122 hgsc.bcm.edu hg19 11 65618862 65618862 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SNX32 NM_152760 exon8 c.A773G p.N258S AAGTCAACCAGCT . 51.0 4.0 65.0 0.0 . 46 . . Atlas-SNP ACY3 91703 hgsc.bcm.edu hg19 11 67412312 67412312 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ACY3 NM_080658 exon7 c.A663G p.E221E ATAGGCTTCCATC . 93.0 4.0 130.0 0.0 . 27 . . Atlas-SNP GAL 51083 hgsc.bcm.edu hg19 11 68453108 68453108 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GAL NM_015973 exon3 c.T128C p.L43P ACCTGCTGGGCCC . 60.0 4.0 65.0 0.0 . 11 . . Atlas-SNP FCHSD2 9873 hgsc.bcm.edu hg19 11 72551974 72551974 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FCHSD2 NM_014824 exon19 c.T2087C p.F696S TGTGAGAATCCTG . 67.0 4.0 74.0 0.0 . 106 . . Atlas-SNP TYR 7299 hgsc.bcm.edu hg19 11 88911210 88911210 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TYR NM_000372 exon1 c.T89C p.L30P AGAACCTGATGGA . 100.0 4.0 114.0 0.0 . 130 . . Atlas-SNP KIAA1731 85459 hgsc.bcm.edu hg19 11 93455128 93455128 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KIAA1731 NM_033395 exon20 c.A5859G p.T1953T TAAAACACTGTCT . 66.0 4.0 103.0 0.0 . 173 . . Atlas-SNP PGR 5241 hgsc.bcm.edu hg19 11 100933405 100933405 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PGR NM_000926 exon4 c.T1985C p.V662A TTTGGAACGCCCA . 97.0 4.0 86.0 0.0 . 115 . . Atlas-SNP CWF19L2 143884 hgsc.bcm.edu hg19 11 107260852 107260852 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee CWF19L2_ENST00000282251,right_upper_lobe,carcinoma,0,2 CWF19L2 NM_152434 exon12 c.A1820G p.K607R CCCATCTTTTCAT . 100.0 4.0 132.0 0.0 . 135 . . Atlas-SNP ALKBH8 91801 hgsc.bcm.edu hg19 11 107403057 107403057 + Missense_Mutation SNP T T C rs202093339 by1000genomes;alternate_allele TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ALKBH8 NM_138775 exon8 c.A847G p.T283A CTCCTGTCATCAC . 174.0 7.0 188.0 0.0 . 88 . T|1.000;A|0.000 Atlas-SNP ARHGEF12 23365 hgsc.bcm.edu hg19 11 120312472 120312472 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ARHGEF12 NM_015313 exon14 c.T1149C p.A383A CCCGGCTCATTTG . 88.0 4.0 131.0 0.0 . 133 . . Atlas-SNP TECTA 7007 hgsc.bcm.edu hg19 11 121060537 121060537 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TECTA NM_005422 exon22 c.T6315C p.P2105P TGGGCCTCTCTGC . 88.0 4.0 102.0 0.0 . 329 . . Atlas-SNP KIRREL3 84623 hgsc.bcm.edu hg19 11 126326264 126326264 + Silent SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KIRREL3 NM_032531 exon7 c.C828T p.N276N AGCTGGGTTGGCC . 96.0 4.0 154.0 0.0 . 183 . . Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133815970 133815970 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . IGSF9B NM_014987 exon2 c.A248G p.D83G TCAGGGTCCACGT . 95.0 4.0 128.0 0.0 . 290 . . Atlas-SNP ATN1 1822 hgsc.bcm.edu hg19 12 7050122 7050122 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ATN1 NM_001007026 exon8 c.T3294C p.T1098T TGGAACTCTCCCT . 65.0 5.0 103.0 0.0 . 95 . . Atlas-SNP PTPRO 5800 hgsc.bcm.edu hg19 12 15668472 15668472 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PTPRO NM_002848 exon8 c.G1505A p.G502D TTCCTGGTGCCCA . 95.0 4.0 151.0 0.0 . 148 . . Atlas-SNP ANO6 196527 hgsc.bcm.edu hg19 12 45803139 45803139 + Splice_Site SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ANO6 NM_001204803 exon17 c.1944-1G>A . TTGGCAGCTGGAT . 53.0 4.0 75.0 0.0 . 163 . . Atlas-SNP CERS5 91012 hgsc.bcm.edu hg19 12 50529757 50529757 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_147190 exon7 c.G732A p.M244I TAGACACATGATC . 77.0 4.0 107.0 0.0 . . . . Atlas-SNP KRT2 3849 hgsc.bcm.edu hg19 12 53039093 53039093 + Nonsense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KRT2 NM_000423 exon9 c.C1630T p.R544X ACTGTCGGCCTCC . 67.0 13.0 74.0 0.0 . 94 . . Atlas-SNP HOXC13 3229 hgsc.bcm.edu hg19 12 54338925 54338925 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HOXC13 NM_017410 exon2 c.T878C p.I293T GGCGCATCTCCGC . 97.0 4.0 125.0 0.0 . 24 . . Atlas-SNP ITGA7 3679 hgsc.bcm.edu hg19 12 56091488 56091488 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ITGA7 NM_001144996 exon9 c.T1412C p.V471A AAGAGCACTGCGG . 52.0 4.0 86.0 0.0 . 194 . . Atlas-SNP SDR9C7 121214 hgsc.bcm.edu hg19 12 57327766 57327766 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SDR9C7 NM_148897 exon1 c.A280G p.R94G TGTCCCTCACCCA . 50.0 5.0 51.0 0.0 . 31 . . Atlas-SNP C12orf66 144577 hgsc.bcm.edu hg19 12 64588106 64588106 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . C12orf66 NM_152440 exon3 c.A854G p.E285G TTCATTTCTGAAG . 97.0 4.0 117.0 0.0 . 28 . . Atlas-SNP MDM1 56890 hgsc.bcm.edu hg19 12 68696473 68696473 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MDM1 NM_017440 exon12 c.A1899G p.P633P AACATGTGGTGGA . 67.0 4.0 82.0 0.0 . 74 . . Atlas-SNP SLC6A15 55117 hgsc.bcm.edu hg19 12 85277565 85277565 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC6A15 NM_018057 exon5 c.A829G p.T277A AATCTGTAACAGA . 111.0 5.0 118.0 0.0 . 159 . . Atlas-SNP CCER1 196477 hgsc.bcm.edu hg19 12 91348442 91348442 + Nonsense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_152638 exon1 c.G78A p.W26X GTGTGCCCAGCCA . 54.0 10.0 86.0 0.0 . . . . Atlas-SNP SLC17A8 246213 hgsc.bcm.edu hg19 12 100813891 100813891 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC17A8 NM_139319 exon12 c.T1724C p.L575P AAGAGCTGACATC . 51.0 4.0 49.0 0.0 . 89 . . Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112667541 112667541 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_001109662 exon41 c.A6078G p.G2026G GAAGCCTCCAAGT . 88.0 4.0 112.0 0.0 . . . . Atlas-SNP TBX5 6910 hgsc.bcm.edu hg19 12 114793494 114793494 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TBX5 NM_000192 exon9 c.T1400C p.V467A TGCCTGACCACAG . 67.0 4.0 101.0 0.0 . 188 . . Atlas-SNP GCN1L1 10985 hgsc.bcm.edu hg19 12 120587839 120587839 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GCN1L1 NM_006836 exon35 c.T4318C p.F1440L AGGCAAAGAGGGC . 76.0 4.0 94.0 0.0 . 207 . . Atlas-SNP NCOR2 9612 hgsc.bcm.edu hg19 12 124824721 124824721 + Missense_Mutation SNP C C T rs112797765 bycluster TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee .,32 NCOR2 NM_006312 exon39 c.G5518A p.G1840R CACCCCCGCCGCT . 24.0 2.0 28.0 0.0 . 475 . . Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 28942736 28942736 + Silent SNP C C T rs200627038 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FLT1 NM_001160030 exon15 c.G2181A p.S727S TGATGACGATGAT . 96.0 24.0 91.0 0.0 . 393 . . Atlas-SNP FLT1 2321 hgsc.bcm.edu hg19 13 28942739 28942739 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FLT1 NM_001160030 exon15 c.A2178G p.S726S TGACGATGATGAT . 58.0 31.0 52.0 0.0 . 393 . . Atlas-SNP MRPS31 10240 hgsc.bcm.edu hg19 13 41323319 41323319 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MRPS31 NM_005830 exon6 c.A913G p.T305A CTTTTGTCCACTG . 67.0 4.0 146.0 0.0 . 30 . . Atlas-SNP SLC25A30 253512 hgsc.bcm.edu hg19 13 45978525 45978525 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC25A30 NM_001010875 exon5 c.G330A p.V110V ACATATCACATTT . 42.0 4.0 85.0 0.0 . 24 . . Atlas-SNP OR11G2 390439 hgsc.bcm.edu hg19 14 20666184 20666184 + Silent SNP C C G rs74538160 bycluster TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . OR11G2 NM_001005503 exon1 c.C690G p.G230G AAAAGGCCCTGTG . 148.0 10.0 185.0 0.0 . 73 . . Atlas-SNP HNRNPC 3183 hgsc.bcm.edu hg19 14 21699222 21699222 + Missense_Mutation SNP A A C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HNRNPC NM_001077443 exon3 c.T251G p.L84R GCAGCCAGGTTAA . 60.0 14.0 64.0 0.0 . 31 . . Atlas-SNP TGM1 7051 hgsc.bcm.edu hg19 14 24729674 24729674 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TGM1 NM_000359 exon4 c.T739C p.F247L GGTTGAAGAGGAT . 57.0 21.0 90.0 0.0 . 73 . . Atlas-SNP KLHL28 54813 hgsc.bcm.edu hg19 14 45414969 45414969 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KLHL28 NM_017658 exon2 c.A163G p.S55G TGACGCTGGCAAG . 85.0 5.0 115.0 0.0 . 53 . . Atlas-SNP MDGA2 161357 hgsc.bcm.edu hg19 14 47342700 47342700 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee MDGA2_ENST00000439988,colon,carcinoma,0,3 MDGA2 NM_001113498 exon14 c.T2688C p.P896P TCCATAAGGGTTT . 66.0 3.0 76.0 0.0 . 470 . . Atlas-SNP KLHDC2 23588 hgsc.bcm.edu hg19 14 50249607 50249607 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KLHDC2 NM_014315 exon13 c.T1157C p.L386P ACTGCCTTCCAAA . 90.0 4.0 112.0 0.0 . 33 . . Atlas-SNP L2HGDH 79944 hgsc.bcm.edu hg19 14 50769676 50769676 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . L2HGDH NM_024884 exon2 c.T200C p.L67P AGGATGAGTGCTC . 52.0 4.0 45.0 0.0 . 33 . . Atlas-SNP DAAM1 23002 hgsc.bcm.edu hg19 14 59793328 59793328 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DAAM1 NM_001270520 exon11 c.A1275G p.T425T CTCCACACCTTTG . 145.0 6.0 210.0 0.0 . 95 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64496677 64496677 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SYNE2 NM_182914 exon44 c.A6779G p.D2260G TCACAGACCTGAA . 80.0 4.0 119.0 0.0 . 577 . . Atlas-SNP MTHFD1 4522 hgsc.bcm.edu hg19 14 64898578 64898578 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MTHFD1 NM_005956 exon15 c.A1493G p.K498R GGTTAAAGGTAAG . 87.0 4.0 87.0 0.0 . 61 . . Atlas-SNP ENTPD5 957 hgsc.bcm.edu hg19 14 74443063 74443063 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ENTPD5 NM_001249 exon9 c.A606G p.G202G GGAGGCTCCCCCT . 103.0 5.0 122.0 0.0 . 26 . . Atlas-SNP YLPM1 56252 hgsc.bcm.edu hg19 14 75265057 75265057 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . YLPM1 NM_019589 exon5 c.T3057C p.S1019S CTCATCTTACAGA . 75.0 4.0 83.0 0.0 . 298 . . Atlas-SNP GTF2A1 2957 hgsc.bcm.edu hg19 14 81670411 81670411 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GTF2A1 NM_015859 exon3 c.A170G p.D57G AATCCATCTACTG . 114.0 5.0 178.0 0.0 . 34 . . Atlas-SNP SERPINA4 5267 hgsc.bcm.edu hg19 14 95033451 95033451 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SERPINA4 NM_006215 exon3 c.T794C p.V265A GCTCGGTGCTACG . 118.0 5.0 147.0 0.0 . 81 . . Atlas-SNP SERPINA4 5267 hgsc.bcm.edu hg19 14 95034486 95034486 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SERPINA4 NM_006215 exon4 c.A944G p.E315G AGCTAGAGTTGCA . 68.0 4.0 103.0 0.0 . 81 . . Atlas-SNP RTL1 388015 hgsc.bcm.edu hg19 14 101350675 101350675 + Missense_Mutation SNP G G C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RTL1 NM_001134888 exon1 c.C451G p.Q151E GCTCTTGAGGAGT . 134.0 6.0 188.0 0.0 . 120 . . Atlas-SNP RTL1 388015 hgsc.bcm.edu hg19 14 101350676 101350676 + Silent SNP A A T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RTL1 NM_001134888 exon1 c.T450A p.P150P CTCTTGAGGAGTC . 134.0 6.0 186.0 0.0 . 120 . . Atlas-SNP RTL1 388015 hgsc.bcm.edu hg19 14 101351059 101351059 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RTL1 NM_001134888 exon1 c.A67G p.M23V ACTCCATTTGTTT . 72.0 4.0 87.0 0.0 . 120 . . Atlas-SNP DYNC1H1 1778 hgsc.bcm.edu hg19 14 102515840 102515840 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DYNC1H1 NM_001376 exon75 c.T13436C p.V4479A AGTGGGTGTCCGA . 116.0 5.0 138.0 0.0 . 395 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105407781 105407781 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . AHNAK2 NM_138420 exon7 c.A14007G p.E4669E AACAGATTCCACA . 74.0 4.0 124.0 0.0 . 719 . . Atlas-SNP EXD1 161829 hgsc.bcm.edu hg19 15 41483691 41483691 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . EXD1 NM_152596 exon8 c.A639G p.Q213Q GGCTACTTGAAGG . 83.0 4.0 57.0 0.0 . 52 . . Atlas-SNP ZFP106 64397 hgsc.bcm.edu hg19 15 42742306 42742306 + Missense_Mutation SNP A A C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZFP106 NM_022473 exon2 c.T2095G p.L699V CATCCAAGCTAGC . 106.0 26.0 104.0 0.0 . 117 . . Atlas-SNP GATM 2628 hgsc.bcm.edu hg19 15 45658283 45658283 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GATM NM_001482 exon6 c.T939C p.P313P AATACCAGGTCCA . 84.0 4.0 117.0 0.0 . 34 . . Atlas-SNP SEMA6D 80031 hgsc.bcm.edu hg19 15 48056059 48056059 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SEMA6D NM_153617 exon10 c.C760T p.R254C TATTCCCGCGTGG . 116.0 37.0 125.0 0.0 . 322 . . Atlas-SNP CEP152 22995 hgsc.bcm.edu hg19 15 49083508 49083508 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CEP152 NM_014985 exon8 c.A898G p.R300G TCTCTCTTTCTTT . 72.0 4.0 101.0 0.0 . 145 . . Atlas-SNP MYO5C 55930 hgsc.bcm.edu hg19 15 52548896 52548896 + Silent SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MYO5C NM_018728 exon11 c.C1335T p.N445N AAAGCTGTTCACA . 80.0 4.0 93.0 0.0 . 162 . . Atlas-SNP FAM214A 56204 hgsc.bcm.edu hg19 15 52874394 52874394 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_019600 exon13 c.A3188G p.Y1063C TCAGTGTAAGATT . 99.0 4.0 105.0 0.0 . . . . Atlas-SNP GLCE 26035 hgsc.bcm.edu hg19 15 69553621 69553621 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GLCE NM_015554 exon4 c.T782C p.V261A CGAATGTGGCTGA . 90.0 4.0 125.0 0.0 . 48 . . Atlas-SNP HCN4 10021 hgsc.bcm.edu hg19 15 73615722 73615722 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HCN4 NM_005477 exon8 c.A2712G p.I904M CCCGGCTATGGTG . 94.0 4.0 118.0 0.0 . 150 . . Atlas-SNP SEMA7A 8482 hgsc.bcm.edu hg19 15 74709008 74709008 + Missense_Mutation SNP C C T rs140707085 bycluster TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SEMA7A NM_003612 exon7 c.G709A p.D237N TGTCATCGTAAGC . 248.0 19.0 315.0 0.0 . 58 . C|1.000;T|0.000 Atlas-SNP CYP1A1 1543 hgsc.bcm.edu hg19 15 75015354 75015354 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CYP1A1 NM_000499 exon2 c.T85C p.S29P GTCTTGAGGCCCT . 91.0 4.0 123.0 0.0 . 60 . . Atlas-SNP FAM219B 57184 hgsc.bcm.edu hg19 15 75197055 75197055 + Splice_Site SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_020447 exon5 c.381-2A>G . CATCACTAGGAGA . 68.0 4.0 87.0 0.0 . . . . Atlas-SNP TBC1D2B 23102 hgsc.bcm.edu hg19 15 78305187 78305187 + Missense_Mutation SNP C C G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TBC1D2B NM_144572 exon9 c.G2248C p.G750R AGTAGCCGATATC . 232.0 16.0 234.0 0.0 . 104 . . Atlas-SNP BLM 641 hgsc.bcm.edu hg19 15 91292851 91292851 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . BLM NM_000057 exon3 c.T353C p.V118A AGGAAGTTGTATG . 83.0 4.0 67.0 0.0 . 122 . . Atlas-SNP MCTP2 55784 hgsc.bcm.edu hg19 15 94841577 94841577 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MCTP2 NM_001159643 exon1 c.T83C p.V28A AGAAGGTGAAAAA . 96.0 4.0 63.0 0.0 . 122 . . Atlas-SNP TEKT5 146279 hgsc.bcm.edu hg19 16 10729745 10729745 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TEKT5 NM_144674 exon6 c.A1117G p.T373A TGATGGTGTTCTC . 99.0 4.0 114.0 0.0 . 66 . . Atlas-SNP C16orf62 57020 hgsc.bcm.edu hg19 16 19619534 19619534 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . C16orf62 NM_020314 exon10 c.C1086T p.A362A CACGGCCAAGGAA . 98.0 4.0 127.0 0.0 . 164 . . Atlas-SNP DNAH3 55567 hgsc.bcm.edu hg19 16 21011556 21011556 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DNAH3 NM_017539 exon43 c.G6411A p.V2137V AAACACCACTGCT . 92.0 4.0 122.0 0.0 . 1142 . . Atlas-SNP OTOA 146183 hgsc.bcm.edu hg19 16 21716543 21716543 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . OTOA NM_144672 exon11 c.T1034C p.V345A CCACTGTGGCTCA . 103.0 5.0 103.0 0.0 . 144 . . Atlas-SNP SCNN1G 6340 hgsc.bcm.edu hg19 16 23223435 23223435 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SCNN1G NM_001039 exon8 c.A1257G p.A419A TCCTGCAGCCAAC . 68.0 4.0 77.0 0.0 . 82 . . Atlas-SNP DCTN5 84516 hgsc.bcm.edu hg19 16 23654296 23654296 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DCTN5 NM_001199011 exon2 c.T69C p.S23S AGTCAGTCGCCAG . 64.0 4.0 73.0 0.0 . 21 . . Atlas-SNP NLRC5 84166 hgsc.bcm.edu hg19 16 57065327 57065327 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee NLRC5,rectum,carcinoma,0,1 NLRC5 NM_032206 exon10 c.T2429C p.L810P CGGACCTCATCTT . 222.0 12.0 231.0 1.0 . 186 . . Atlas-SNP SLC38A7 55238 hgsc.bcm.edu hg19 16 58712696 58712696 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC38A7 NM_018231 exon4 c.A373G p.K125E TCAGCTTGCCACA . 84.0 4.0 124.0 0.0 . 26 . . Atlas-SNP CDH8 1006 hgsc.bcm.edu hg19 16 61687550 61687550 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee CDH8,NS,malignant_melanoma,0,3 CDH8 NM_001796 exon12 c.G2362A p.E788K AGAGTTCGCCCAG . 138.0 30.0 179.0 0.0 . 273 . . Atlas-SNP ZDHHC1 29800 hgsc.bcm.edu hg19 16 67434899 67434899 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZDHHC1 NM_013304 exon4 c.T389C p.V130A TCAATGACATGTG . 148.0 6.0 176.0 0.0 . 28 . . Atlas-SNP CIRH1A 84916 hgsc.bcm.edu hg19 16 69187545 69187545 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CIRH1A NM_032830 exon9 c.A1061G p.H354R CTCATCACTTAGA . 89.0 4.0 97.0 0.0 . 48 . . Atlas-SNP NFAT5 10725 hgsc.bcm.edu hg19 16 69718852 69718852 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NFAT5 NM_138713 exon11 c.T1753C p.S585P CCTTGCTCTTTTG . 103.0 5.0 103.0 0.0 . 184 . . Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74528659 74528659 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GLG1 NM_001145667 exon6 c.A1049G p.K350R CTTACCTTTTCAC . 91.0 4.0 76.0 0.0 . 106 . . Atlas-SNP CNTNAP4 85445 hgsc.bcm.edu hg19 16 76523688 76523688 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CNTNAP4 NM_138994 exon12 c.T1769C p.M590T CCAGCATGGAGCA . 109.0 5.0 145.0 0.0 . 600 . . Atlas-SNP ZZEF1 23140 hgsc.bcm.edu hg19 17 3920939 3920939 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZZEF1 NM_015113 exon48 c.A7727G p.Q2576R CTCTGCTGCAGTT . 98.0 4.0 130.0 0.0 . 195 . . Atlas-SNP ZNF232 7775 hgsc.bcm.edu hg19 17 5009622 5009622 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZNF232 NM_014519 exon5 c.T832C p.W278R GGGACCACCTCAG . 78.0 4.0 80.0 0.0 . 42 . . Atlas-SNP RABEP1 9135 hgsc.bcm.edu hg19 17 5235279 5235279 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RABEP1 NM_004703 exon3 c.G199A p.A67T CAAGCTGCACAAG . 41.0 4.0 38.0 0.0 . 59 . . Atlas-SNP POLR2A 5430 hgsc.bcm.edu hg19 17 7416450 7416450 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . POLR2A NM_000937 exon29 c.T4867C p.S1623P TCCTACTCCCCTA . 190.0 9.0 213.0 0.0 . 157 . . Atlas-SNP CHD3 1107 hgsc.bcm.edu hg19 17 7804563 7804563 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CHD3 NM_001005271 exon20 c.A3299G p.E1100G TTCAGGAGTCCCC . 71.0 4.0 64.0 0.0 . 169 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11757692 11757692 + Missense_Mutation SNP G G A rs368607572 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DNAH9 NM_001372 exon50 c.G9880A p.A3294T GCCACCGCGGACC . 115.0 44.0 113.0 0.0 . 695 . . Atlas-SNP COX10 1352 hgsc.bcm.edu hg19 17 13972945 13972945 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . COX10 NM_001303 exon1 c.T23C p.L8P ACACTCTCTCCTC . 137.0 7.0 127.0 0.0 . 36 . . Atlas-SNP NCOR1 9611 hgsc.bcm.edu hg19 17 15973506 15973506 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NCOR1 NM_001190440 exon30 c.T4534C p.S1512P TGGGTGAGCCTCT . 101.0 5.0 116.0 0.0 . 240 . . Atlas-SNP SMCR8 140775 hgsc.bcm.edu hg19 17 18219495 18219495 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SMCR8 NM_144775 exon1 c.G392A p.G131D AGGAGGGCGCCTT . 61.0 4.0 42.0 0.0 . 62 . . Atlas-SNP PSMD3 5709 hgsc.bcm.edu hg19 17 38142922 38142922 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PSMD3 NM_002809 exon3 c.T506C p.L169P TCCAACTCCTCGT . 97.0 4.0 124.0 0.0 . 56 . . Atlas-SNP BECN1 8678 hgsc.bcm.edu hg19 17 40970263 40970263 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . BECN1 NM_003766 exon7 c.A659G p.E220G AGTCTCTCAGCCT . 199.0 8.0 245.0 0.0 . 23 . . Atlas-SNP SPAG9 9043 hgsc.bcm.edu hg19 17 49043633 49043633 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SPAG9 NM_001130528 exon30 c.A3966G p.X1322W ATGGGCTCACTCA . 85.0 5.0 93.0 0.0 . 151 . . Atlas-SNP MRPS23 51649 hgsc.bcm.edu hg19 17 55918549 55918549 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MRPS23 NM_016070 exon3 c.T288C p.C96C CCGTTGACAGGTA . 64.0 4.0 72.0 0.0 . 16 . . Atlas-SNP MED13 9969 hgsc.bcm.edu hg19 17 60050201 60050201 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MED13 NM_005121 exon17 c.T3854C p.L1285P GGCTGAAGAGAGA . 81.0 4.0 75.0 0.0 . 181 . . Atlas-SNP MRC2 9902 hgsc.bcm.edu hg19 17 60766239 60766239 + Missense_Mutation SNP C C A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MRC2 NM_006039 exon23 c.C3252A p.S1084R GCACAGCCCCTCA . 124.0 42.0 127.0 0.0 . 126 . . Atlas-SNP PSMD12 5718 hgsc.bcm.edu hg19 17 65338310 65338310 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PSMD12 NM_002816 exon10 c.T1153C p.S385P CAACAGATAGATC . 80.0 4.0 90.0 0.0 . 32 . . Atlas-SNP BPTF 2186 hgsc.bcm.edu hg19 17 65971931 65971931 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee BPTF_ENST00000335221,caecum,carcinoma,0,2 BPTF NM_182641 exon27 c.A8583G p.E2861E TTATGAAAAGCTG . 56.0 3.0 74.0 0.0 . 415 . . Atlas-SNP ABCA6 23460 hgsc.bcm.edu hg19 17 67096941 67096941 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ABCA6 NM_080284 exon22 c.T3009C p.P1003P TACAAGAGGAAAT . 89.0 4.0 125.0 0.0 . 210 . . Atlas-SNP ABCA10 10349 hgsc.bcm.edu hg19 17 67190540 67190540 + Missense_Mutation SNP G G A rs200155538 bycluster TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee .,5 ABCA10 NM_080282 exon13 c.C1331T p.S444F GAAACAGACAATC . 44.0 8.0 39.0 0.0 . 209 . . Atlas-SNP RNF213 57674 hgsc.bcm.edu hg19 17 78280933 78280933 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RNF213 NM_001256071 exon13 c.T2433C p.V811V GGATGTTCAGGAT . 121.0 5.0 93.0 0.0 . 766 . . Atlas-SNP RNF213 57674 hgsc.bcm.edu hg19 17 78346832 78346832 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RNF213 NM_001256071 exon49 c.T12809C p.V4270A TCCGGGTGGAGAA . 95.0 6.0 135.0 0.0 . 766 . . Atlas-SNP MYOM1 8736 hgsc.bcm.edu hg19 18 3090725 3090725 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MYOM1 NM_003803 exon27 c.G3940A p.G1314R ACGTTCCCTCATC . 165.0 30.0 216.0 0.0 . 192 . . Atlas-SNP ANKRD12 23253 hgsc.bcm.edu hg19 18 9254527 9254527 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ANKRD12 NM_015208 exon9 c.T1262C p.V421A CTAGGGTCTTATA . 76.0 4.0 80.0 0.0 . 167 . . Atlas-SNP CCDC178 374864 hgsc.bcm.edu hg19 18 30517978 30517978 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_001105528 exon22 c.T2601C p.G867G TGCTTAACCATCG . 87.0 4.0 144.0 0.0 . . . . Atlas-SNP EPG5 57724 hgsc.bcm.edu hg19 18 43496028 43496028 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . EPG5 NM_020964 exon19 c.T3528C p.A1176A CTGAAAAGCTGCT . 55.0 4.0 82.0 0.0 . 199 . . Atlas-SNP MYO5B 4645 hgsc.bcm.edu hg19 18 47402100 47402100 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MYO5B NM_001080467 exon26 c.T3494C p.V1165A AGCTGCACTTGCA . 98.0 4.0 155.0 0.0 . 178 . . Atlas-SNP TCF4 6925 hgsc.bcm.edu hg19 18 53018227 53018227 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TCF4 NM_001243226 exon8 c.T683C p.L228P CCAAGGAGACTCT . 100.0 4.0 125.0 0.0 . 178 . . Atlas-SNP MED16 10025 hgsc.bcm.edu hg19 19 873468 873468 + Missense_Mutation SNP A A G rs367567945 alternate_allele TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . MED16 NM_005481 exon11 c.T1886C p.L629P CTGGCCAGCAGGT . 88.0 5.0 66.0 0.0 . 61 . . Atlas-SNP SBNO2 22904 hgsc.bcm.edu hg19 19 1112458 1112458 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SBNO2 NM_014963 exon21 c.C2458T p.R820C GCACGCGGCGCCG . 49.0 15.0 104.0 0.0 . 112 . . Atlas-SNP ZNF562 54811 hgsc.bcm.edu hg19 19 9768758 9768758 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZNF562 NM_001130032 exon4 c.T168C p.A56A CAGTAAAGCCCAC . 69.0 4.0 142.0 0.0 . 72 . . Atlas-SNP OLFM2 93145 hgsc.bcm.edu hg19 19 9965137 9965137 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . OLFM2 NM_058164 exon6 c.G1090A p.G364S GGTAGCCGGTGTC . 86.0 4.0 126.0 0.0 . 42 . . Atlas-SNP PDE4A 5141 hgsc.bcm.edu hg19 19 10572599 10572599 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PDE4A NM_001111307 exon13 c.T1667C p.L556P CTGACCTGAAGAC . 30.0 4.0 50.0 0.0 . 236 . . Atlas-SNP ATG4D 84971 hgsc.bcm.edu hg19 19 10659671 10659671 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ATG4D NM_032885 exon6 c.T927C p.G309G ACTGGGTGGCGAG . 117.0 5.0 138.0 0.0 . 47 . . Atlas-SNP HSH2D 84941 hgsc.bcm.edu hg19 19 16268213 16268213 + Missense_Mutation SNP A A G rs375451762 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HSH2D NM_032855 exon9 c.A667G p.S223G TAAAAAAGCCACC . 163.0 7.0 93.0 0.0 . 16 . . Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23556628 23556628 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZNF91 NM_003430 exon3 c.T169C p.S57P GCTTAGAGAGAGC . 71.0 4.0 117.0 0.0 . 349 . . Atlas-SNP TSHZ3 57616 hgsc.bcm.edu hg19 19 31769301 31769301 + Silent SNP C C G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TSHZ3 NM_020856 exon2 c.G1398C p.L466L CACATTCAGTTTT . 177.0 34.0 191.0 0.0 . 549 . . Atlas-SNP KIAA0355 9710 hgsc.bcm.edu hg19 19 34818735 34818735 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KIAA0355 NM_014686 exon5 c.C906T p.F302F CGGCTTCCACCTG . 88.0 13.0 99.0 0.0 . 105 . . Atlas-SNP C19orf55 148137 hgsc.bcm.edu hg19 19 36258938 36258938 + Splice_Site SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee .,11 C19orf55 NM_001039887 exon9 c.1190+1G>A . TGCCCAGGGCCGC . 16.0 2.0 16.0 0.0 . 39 . . Atlas-SNP NPHS1 4868 hgsc.bcm.edu hg19 19 36330220 36330220 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NPHS1 NM_004646 exon22 c.A3028G p.R1010G AGACCCTGTATCT . 76.0 4.0 88.0 0.0 . 165 . . Atlas-SNP SAMD4B 55095 hgsc.bcm.edu hg19 19 39868421 39868421 + Silent SNP C C G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SAMD4B NM_018028 exon10 c.C1401G p.A467A CGTCGCCGACGGA . 78.0 12.0 88.0 0.0 . 48 . . Atlas-SNP ADCK4 79934 hgsc.bcm.edu hg19 19 41220249 41220249 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ADCK4 NM_001142555 exon3 c.A156G p.R52R CAGGCCTCTCCCA . 52.0 4.0 60.0 0.0 . 92 . . Atlas-SNP LMTK3 114783 hgsc.bcm.edu hg19 19 49003158 49003158 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LMTK3 NM_001080434 exon12 c.T1255C p.S419P AGCAGGACTGAAG . 100.0 4.0 116.0 0.0 . 125 . . Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657916 49657916 + Silent SNP T T C rs7409255 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HRC NM_002152 exon1 c.A579G p.E193E CTCCTCTTCTCCT . 175.0 15.0 126.0 0.0 . 85 . . Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657920 49657920 + Missense_Mutation SNP C C T rs200730671 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HRC NM_002152 exon1 c.G575A p.G192E TCTTCTCCTTCAT . 177.0 13.0 130.0 0.0 . 85 . . Atlas-SNP ZNF28 7576 hgsc.bcm.edu hg19 19 53303761 53303761 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZNF28 NM_006969 exon4 c.A1337G p.K446R AAAACCTTGCCAC . 70.0 4.0 53.0 0.0 . 191 . . Atlas-SNP LILRB5 10990 hgsc.bcm.edu hg19 19 54759311 54759311 + Missense_Mutation SNP C C T rs376519844 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LILRB5 NM_001081442 exon5 c.G790A p.V264I CCTGGACGAGGTC . 228.0 28.0 217.0 0.0 . 176 . . Atlas-SNP ZNF71 58491 hgsc.bcm.edu hg19 19 57133319 57133319 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZNF71 NM_021216 exon3 c.G664A p.A222T GGCAAGGCCTTCC . 118.0 18.0 100.0 0.0 . 69 . . Atlas-SNP DEFB126 81623 hgsc.bcm.edu hg19 20 126206 126206 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . DEFB126 NM_030931 exon2 c.T209C p.V70A ATCCTGTTTTCTG . 134.0 6.0 109.0 0.0 . 52 . . Atlas-SNP SIRPB2 284759 hgsc.bcm.edu hg19 20 1460431 1460431 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SIRPB2 NM_001122962 exon2 c.C365T p.T122I GTTCCAGTGTGCT . 217.0 61.0 233.0 0.0 . 50 . . Atlas-SNP CHGB 1114 hgsc.bcm.edu hg19 20 5903684 5903684 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CHGB NM_001819 exon4 c.T894C p.S298S AGGGAGTCTTCCC . 72.0 4.0 79.0 0.0 . 112 . . Atlas-SNP FERMT1 55612 hgsc.bcm.edu hg19 20 6057869 6057869 + Missense_Mutation SNP T T A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FERMT1 NM_017671 exon15 c.A1985T p.E662V AGTGTTTCATTCT . 137.0 23.0 167.0 0.0 . 106 . . Atlas-SNP TPX2 22974 hgsc.bcm.edu hg19 20 30366726 30366726 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TPX2 NM_012112 exon10 c.T993C p.V331V GCAAGTTGAAGAC . 92.0 4.0 96.0 0.0 . 61 . . Atlas-SNP BPIFB3 359710 hgsc.bcm.edu hg19 20 31644372 31644372 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . . NM_182658 exon2 c.A149G p.E50G TTGGGGAGCCCAT . 91.0 4.0 101.0 0.0 . . . . Atlas-SNP L3MBTL1 26013 hgsc.bcm.edu hg19 20 42157387 42157387 + Splice_Site SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . L3MBTL1 NM_032107 exon8 c.885+2T>C . AGGACGTGAGTTG . 118.0 5.0 146.0 0.0 . 105 . . Atlas-SNP IFT52 51098 hgsc.bcm.edu hg19 20 42252541 42252541 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . IFT52 NM_016004 exon10 c.A779G p.Y260C CTGACTACATGAT . 94.0 4.0 126.0 0.0 . 40 . . Atlas-SNP PCIF1 63935 hgsc.bcm.edu hg19 20 44574501 44574501 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PCIF1 NM_022104 exon12 c.C1320T p.S440S GGTCAGCCGCAAC . 90.0 4.0 112.0 0.0 . 51 . . Atlas-SNP NCOA3 8202 hgsc.bcm.edu hg19 20 46271003 46271003 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NCOA3 NM_181659 exon17 c.A3127G p.N1043D CCTTCCAACCTGG . 40.0 4.0 72.0 0.0 . 156 . . Atlas-SNP RAE1 8480 hgsc.bcm.edu hg19 20 55949682 55949682 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RAE1 NM_003610 exon11 c.A845G p.H282R CGTTCCATCCTGT . 79.0 4.0 80.0 0.0 . 54 . . Atlas-SNP SLC2A4RG 56731 hgsc.bcm.edu hg19 20 62373927 62373927 + Missense_Mutation SNP G G A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC2A4RG NM_020062 exon6 c.G919A p.V307I AGCACCGTTGCTA . 39.0 6.0 40.0 0.0 . 20 . . Atlas-SNP NRIP1 8204 hgsc.bcm.edu hg19 21 16339695 16339695 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . NRIP1 NM_003489 exon4 c.A819G p.E273E ATGGGCTTCGCTT . 99.0 4.0 105.0 0.0 . 103 . . Atlas-SNP IL10RB 3588 hgsc.bcm.edu hg19 21 34660496 34660496 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . IL10RB NM_000628 exon6 c.T734C p.L245P CCTTGCTGTGGTG . 93.0 4.0 99.0 0.0 . 37 . . Atlas-SNP IFNGR2 3460 hgsc.bcm.edu hg19 21 34805151 34805151 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . IFNGR2 NM_005534 exon6 c.A852G p.P284P CACTCCACCAAGC . 97.0 5.0 99.0 0.0 . 30 . . Atlas-SNP SIM2 6493 hgsc.bcm.edu hg19 21 38095410 38095410 + Silent SNP C C A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SIM2 NM_005069 exon5 c.C522A p.G174G CGCGGGCCTGACC . 58.0 14.0 80.0 0.0 . 55 . . Atlas-SNP CBS 875 hgsc.bcm.edu hg19 21 44480560 44480560 + Missense_Mutation SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CBS NM_000071 exon12 c.G1136A p.R379Q TAGTTCCGCACTG . 54.0 4.0 58.0 0.0 . 85 . . Atlas-SNP PCNT 5116 hgsc.bcm.edu hg19 21 47817283 47817283 + Missense_Mutation SNP T T G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . PCNT NM_006031 exon22 c.T4321G p.S1441A TTGGAGTCTGAGT . 78.0 4.0 95.0 0.0 . 283 . . Atlas-SNP EIF4ENIF1 56478 hgsc.bcm.edu hg19 22 31846327 31846327 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . EIF4ENIF1 NM_019843 exon11 c.T1532C p.L511S GACATCAAATGGC . 83.0 4.0 99.0 0.0 . 80 . . Atlas-SNP KCTD17 79734 hgsc.bcm.edu hg19 22 37453518 37453518 + Silent SNP C C T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KCTD17 NM_024681 exon4 c.C492T p.G164G TGATGGCTGGCGC . 46.0 4.0 75.0 0.0 . 17 . . Atlas-SNP KLHDC7B 113730 hgsc.bcm.edu hg19 22 50987911 50987911 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . KLHDC7B NM_138433 exon1 c.T1316C p.F439S GCACCTTCCCTGT . 73.0 4.0 97.0 0.0 . 39 . . Atlas-SNP TLR7 51284 hgsc.bcm.edu hg19 X 12904278 12904278 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TLR7 NM_016562 exon3 c.A651G p.T217T TGTCACAGCCGTC . 97.0 4.0 134.0 0.0 . 125 . . Atlas-SNP TLR7 51284 hgsc.bcm.edu hg19 X 12905003 12905003 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . TLR7 NM_016562 exon3 c.T1376C p.V459A CCCAGGTCCTGGA . 69.0 4.0 69.0 0.0 . 125 . . Atlas-SNP ZFX 7543 hgsc.bcm.edu hg19 X 24197777 24197777 + Missense_Mutation SNP A A T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZFX NM_003410 exon5 c.A536T p.E179V CAGAAGAAGTATT . 89.0 7.0 129.0 0.0 . 61 . . Atlas-SNP ZFX 7543 hgsc.bcm.edu hg19 X 24197779 24197779 + Missense_Mutation SNP G G T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ZFX NM_003410 exon5 c.G538T p.V180L GAAGAAGTATTGG . 88.0 6.0 130.0 0.0 . 61 . . Atlas-SNP IQSEC2 23096 hgsc.bcm.edu hg19 X 53310699 53310699 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . IQSEC2 NM_015075 exon1 c.A5G p.E2G GGGGGCTCCATGG . 113.0 6.0 211.0 0.0 . 195 . . Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765176 66765176 + Missense_Mutation SNP A A T rs62636527 TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . AR NM_000044 exon1 c.A188T p.Q63L AGCAGCAGCAGCA . 62.0 10.0 72.0 0.0 . 249 . A|0.982;T|0.018 Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765179 66765179 + Missense_Mutation SNP A A T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . AR NM_000044 exon1 c.A191T p.Q64L AGCAGCAGCAGCA . 69.0 14.0 69.0 0.0 . 249 . . Atlas-SNP STARD8 9754 hgsc.bcm.edu hg19 X 67936251 67936251 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . STARD8 NM_001142503 exon5 c.A275G p.E92G AACTGGAGGTTCA . 94.0 4.0 117.0 0.0 . 282 . . Atlas-SNP ABCB7 22 hgsc.bcm.edu hg19 X 74295254 74295254 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ABCB7 NM_004299 exon6 c.T801C p.A267A TACCAAAGCACTC . 137.0 6.0 157.0 0.0 . 69 . . Atlas-SNP HMGN5 79366 hgsc.bcm.edu hg19 X 80371833 80371833 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HMGN5 NM_030763 exon6 c.A137G p.K46R TTTGTCTTCATTT . 81.0 4.0 102.0 0.0 . 29 . . Atlas-SNP BHLHB9 80823 hgsc.bcm.edu hg19 X 102004756 102004756 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . BHLHB9 NM_001142530 exon2 c.T833C p.I278T AGCCTATCCCTGA . 87.0 4.0 122.0 0.0 . 60 . . Atlas-SNP RBM41 55285 hgsc.bcm.edu hg19 X 106358785 106358785 + Missense_Mutation SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . RBM41 NM_001171080 exon4 c.A320G p.K107R TTTGTCTTCTGAA . 99.0 4.0 127.0 0.0 . 34 . . Atlas-SNP GUCY2F 2986 hgsc.bcm.edu hg19 X 108619161 108619161 + Silent SNP T T C novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GUCY2F NM_001522 exon19 c.A3294G p.K1098K TTCTGCTTTTCTT . 113.0 5.0 155.0 0.0 . 178 . . Atlas-SNP CAPN6 827 hgsc.bcm.edu hg19 X 110490683 110490683 + Silent SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . CAPN6 NM_014289 exon12 c.T1656C p.S552S GACAGGAGAACGG . 113.0 5.0 148.0 0.0 . 120 . . Atlas-SNP HCFC1 3054 hgsc.bcm.edu hg19 X 153225829 153225829 + Missense_Mutation SNP A A G novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . HCFC1 NM_005334 exon7 c.T941C p.L314P TCCTCCAGTGTAT . 124.0 5.0 177.0 0.0 . 284 . . Atlas-SNP LDOC1 23641 hgsc.bcm.edu hg19 X 140270987 140270987 + Frame_Shift_Del DEL A A - novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . LDOC1 NM_012317 exon1 c.221delA p.Y74fs . . 75.0 28.0 95.0 0.0 . 26 . . Atlas-Indel,Pindel GNB1 2782 hgsc.bcm.edu hg19 1 1720616 1720617 + Frame_Shift_Ins INS - - T novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . GNB1 NM_002074 exon10 c.792_793insA p.Y264_S265delinsX . . 151.0 61.0 196.0 0.0 . 39 . . Atlas-Indel,Pindel ALB 213 hgsc.bcm.edu hg19 4 74283258 74283259 + Frame_Shift_Del DEL CG CG - novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 CG CG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . ALB NM_000477 exon11 c.1299_1300del p.433_434del . . 97.0 15.0 105.0 0.0 . 132 . . Atlas-Indel,Pindel FTCD 10841 hgsc.bcm.edu hg19 21 47575400 47575401 + In_Frame_Ins INS - - CCATAA novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . FTCD NM_206965 exon1 c.38_39insTTATGG p.E13delinsVME . . 82.0 11.0 100.0 0.0 . 59 . . Atlas-Indel,Pindel SLC16A4 9122 hgsc.bcm.edu hg19 1 110919677 110919678 + Frame_Shift_Ins INS - - CT novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC16A4 NM_004696 exon7 c.1137_1138insAG p.T379fs . . 98.0 32.0 145.0 0.0 . 47 . . Atlas-INDEL SLC16A4 9122 hgsc.bcm.edu hg19 1 110919678 110919679 + Frame_Shift_Ins INS - - A novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC16A4 NM_004696 exon7 c.1136_1137insT p.T379fs . . 98.0 32.0 147.0 0.0 . 47 . . Atlas-INDEL SLC16A4 9122 hgsc.bcm.edu hg19 1 110919681 110919682 + In_Frame_Ins INS - - TGA novel TCGA-DD-A39X-01A-11D-A20W-10 TCGA-DD-A39X-11A-11D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 0d48a532-df89-439c-8c4f-4b284cfdbb79 c27b95f8-bb8d-429a-b193-81f1caf006ee . SLC16A4 NM_004696 exon7 c.1133_1134insTCA p.I378delinsII . . 96.0 29.0 0.0 0.0 . 47 . . Pindel