Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SHROOM3	57619	hgsc.bcm.edu	37	4	77677614	77677618	+	Frame_Shift_Del	DEL	TTCTA	TTCTA	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	TTCTA	TTCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SHROOM3	NM_020859	exon8	c.4721_4725del	p.1574_1575del	.	.	131.0	19.0	127.0	0.0	.	.	.	.	.
C1orf68	100129271	hgsc.bcm.edu	37	1	152692135	152692135	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	C1orf68	NM_001024679	exon1	c.137delG	p.G46fs	.	.	241.0	61.0	209.0	0.0	.	.	.	.	.
ABCA6	23460	hgsc.bcm.edu	37	17	67110945	67110945	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ABCA6	NM_080284	exon13	c.1741delG	p.A581fs	.	.	286.0	81.0	194.0	0.0	.	.	.	.	.
ZNF687	57592	hgsc.bcm.edu	37	1	151262327	151262328	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF687	NM_020832	exon6	c.2808_2809insC	p.E936fs	.	.	105.0	17.0	94.0	0.0	.	.	.	.	.
FAM63A	55793	hgsc.bcm.edu	37	1	150974678	150974679	+	In_Frame_Ins	INS	-	-	GAG	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FAM63A	NM_001163258	exon3	c.560_561insCTC	p.L187delinsPL	.	.	270.0	62.0	197.0	0.0	.	.	.	.	.
KCNT2	343450	hgsc.bcm.edu	37	1	196274453	196274458	+	In_Frame_Del	DEL	TAATAC	TAATAC	-	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	TAATAC	TAATAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KCNT2	NM_198503	exon22	c.2502_2507del	p.834_836del	.	.	106.0	17.0	84.0	0.0	.	.	.	.	.
MICAL1	64780	hgsc.bcm.edu	37	6	109768571	109768571	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MICAL1	NM_022765	exon16	c.C2059T	p.Q687X	GGTGTTGGGATGG	.	93.0	13.0	82.0	0.0	.	.	.	.	.
RBP5	83758	hgsc.bcm.edu	37	12	7281340	7281340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	RBP5	NM_031491	exon1	c.T32A	p.F11Y	GAGACAAAGCGGT	.	296.0	73.0	223.0	0.0	.	.	.	.	.
ZNF596	169270	hgsc.bcm.edu	37	8	195803	195803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF596	NM_173539	exon6	c.G956A	p.C319Y	GTAAATGTTCTTA	.	149.0	54.0	116.0	0.0	.	.	.	.	.
AK7	122481	hgsc.bcm.edu	37	14	96875279	96875279	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	AK7	NM_152327	exon4	c.498+1G>A	.	GACCCCGTAAGTA	.	61.0	8.0	77.0	0.0	.	.	.	.	.
CD300LG	146894	hgsc.bcm.edu	37	17	41932594	41932594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CD300LG	NM_145273	exon5	c.C739T	p.R247C	ATGGTCCGCATAC	.	116.0	25.0	60.0	0.0	.	.	.	.	.
SLAMF6	114836	hgsc.bcm.edu	37	1	160461021	160461021	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLAMF6	NM_052931	exon3	c.T540C	p.T180T	GGAGACAGTGAGG	.	238.0	71.0	181.0	0.0	.	.	.	.	.
KCNJ8	3764	hgsc.bcm.edu	37	12	21926286	21926286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	KCNJ8	NM_004982	exon2	c.A265G	p.I89V	ACATGATAGCGAA	.	126.0	15.0	75.0	0.0	.	.	.	.	.
LNPEP	4012	hgsc.bcm.edu	37	5	96358073	96358073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	LNPEP	NM_005575	exon14	c.A2446G	p.M816V	CCATCTATGCGAG	.	189.0	54.0	101.0	0.0	.	.	.	.	.
SLITRK2	84631	hgsc.bcm.edu	37	X	144904543	144904543	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SLITRK2	NM_001144005	exon5	c.C600A	p.G200G	TGCTGGCGTCCTT	.	93.0	37.0	78.0	0.0	.	.	.	.	.
IL12RB2	3595	hgsc.bcm.edu	37	1	67787396	67787396	+	Missense_Mutation	SNP	C	C	A	rs149868445	byfrequency;alternate_allele	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	IL12RB2	NM_001559	exon3	c.C188A	p.S63Y	ACTATTCCAGACG	.	204.0	65.0	185.0	0.0	C|1.000;T|0.000	.	.	.	.
BCL11A	53335	hgsc.bcm.edu	37	2	60688821	60688821	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	BCL11A	NM_018014	exon4	c.T1226G	p.L409R	TCGCACAGGTTGC	.	132.0	29.0	118.0	0.0	.	.	.	.	.
ZCCHC2	54877	hgsc.bcm.edu	37	18	60242702	60242702	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZCCHC2	NM_017742	exon13	c.A3388C	p.N1130H	AATGGGAATGTCT	.	197.0	55.0	125.0	0.0	.	.	.	.	.
MROH2B	133558	hgsc.bcm.edu	37	5	41065451	41065451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_173489	exon4	c.G343A	p.E115K	CCAATTCAGCCAG	.	80.0	10.0	47.0	0.0	.	.	.	.	.
ASRGL1	80150	hgsc.bcm.edu	37	11	62159568	62159568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ASRGL1	NM_001083926	exon7	c.G739A	p.A247T	GAAGAGGCTGCGG	.	142.0	28.0	88.0	0.0	.	.	.	.	.
TMEM106C	79022	hgsc.bcm.edu	37	12	48359720	48359720	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	TMEM106C	NM_001143843	exon4	c.C351T	p.G117G	TGACGGCATCAAA	.	740.0	47.0	453.0	0.0	.	.	.	.	.
OR5B12	390191	hgsc.bcm.edu	37	11	58207461	58207461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	OR5B12	NM_001004733	exon1	c.C164A	p.T55N	ATGGGGGTGTGGA	.	178.0	47.0	102.0	0.0	.	.	.	.	.
NPFF	8620	hgsc.bcm.edu	37	12	53900573	53900573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NPFF	NM_003717	exon3	c.T329C	p.F110S	TTCCCAAAGCGTT	.	68.0	17.0	54.0	0.0	.	.	.	.	.
RBM48	84060	hgsc.bcm.edu	37	7	92158153	92158153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_032120	exon1	c.G26T	p.G9V	AGCTAGGGAGTTT	.	176.0	46.0	134.0	0.0	.	.	.	.	.
MME	4311	hgsc.bcm.edu	37	3	154886382	154886382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MME	NM_007287	exon19	c.A1882C	p.N628H	TATGGAAACTTTT	.	393.0	100.0	235.0	0.0	.	.	.	.	.
ZP1	22917	hgsc.bcm.edu	37	11	60641219	60641219	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZP1	NM_207341	exon9	c.T1543G	p.S515A	CTGGACTCAGGCT	.	50.0	12.0	36.0	0.0	.	.	.	.	.
ZNF365	22891	hgsc.bcm.edu	37	10	64148204	64148204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ZNF365	NM_014951	exon3	c.G793T	p.V265F	AAGGAGGTTCAAG	.	160.0	23.0	125.0	0.0	.	.	.	.	.
COL11A1	1301	hgsc.bcm.edu	37	1	103491141	103491141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	COL11A1	NM_080629	exon7	c.A962G	p.Y321C	TAGTTGTATTCTT	.	443.0	67.0	329.0	0.0	.	.	.	.	.
FLT3LG	2323	hgsc.bcm.edu	37	19	49979723	49979723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	FLT3LG	NM_001204503	exon4	c.G242A	p.R81H	CACAGCGCTGGAT	.	68.0	16.0	48.0	0.0	.	.	.	.	.
GSDMB	55876	hgsc.bcm.edu	37	17	38068752	38068752	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	GSDMB	NM_001165958	exon4	c.236-2A>G	.	TTGACCTGGAAAG	.	183.0	48.0	147.0	0.0	.	.	.	.	.
ASH1L	55870	hgsc.bcm.edu	37	1	155308071	155308071	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ASH1L	NM_018489	exon27	c.A8612C	p.N2871T	ATCTCATTGGCTG	.	192.0	57.0	127.0	0.0	.	.	.	.	.
SEMG2	6407	hgsc.bcm.edu	37	20	43851219	43851219	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SEMG2	NM_003008	exon2	c.A946T	p.I316F	ATTTCTATCCAAA	.	257.0	64.0	172.0	0.0	.	.	.	.	.
CYP4Z1	199974	hgsc.bcm.edu	37	1	47571829	47571829	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	CYP4Z1	NM_178134	exon9	c.C1097G	p.T366R	ACACCACGATGTG	.	308.0	107.0	226.0	0.0	.	.	.	.	.
ATP5J2-PTCD1	100526740	hgsc.bcm.edu	37	7	99032672	99032672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001198879	exon3	c.G341A	p.S114N	CCCAGGCTGCCCG	.	47.0	15.0	46.0	0.0	.	.	.	.	.
NRXN1	9378	hgsc.bcm.edu	37	2	50758388	50758388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	NRXN1	NM_001135659	exon12	c.G2444A	p.R815H	TTCACACGTCCTG	.	101.0	20.0	78.0	0.0	.	.	.	.	.
DNAH1	25981	hgsc.bcm.edu	37	3	52393977	52393977	+	Nonsense_Mutation	SNP	C	C	T	rs200763734	alternate_allele	TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DNAH1	NM_015512	exon27	c.C4453T	p.Q1485X	CGCATGCAGCGGG	.	129.0	38.0	111.0	0.0	C|0.998;G|0.002	.	.	.	.
MAGEC1	9947	hgsc.bcm.edu	37	X	140993326	140993326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	MAGEC1	NM_005462	exon4	c.G136C	p.D46H	AGCGACGACACCC	.	59.0	24.0	41.0	0.0	.	.	.	.	.
PCDH11Y	83259	hgsc.bcm.edu	37	Y	4968285	4968285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_032972	exon2	c.C2666A	p.P889Q	CTACCCCAAACCC	.	484.0	120.0	258.0	0.0	.	.	.	.	.
ARHGEF28	64283	hgsc.bcm.edu	37	5	73048919	73048919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_001080479	exon4	c.G367T	p.A123S	CCATTTGCCTTGA	.	154.0	36.0	97.0	0.0	.	.	.	.	.
SPATA24	202051	hgsc.bcm.edu	37	5	138739744	138739744	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_194296	exon1	c.G6T	p.A2A	GGGCGTCGCCATC	.	44.0	12.0	26.0	0.0	.	.	.	.	.
DCLRE1C	64421	hgsc.bcm.edu	37	10	14976379	14976379	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	DCLRE1C	NM_001033855	exon8	c.G678A	p.Q226Q	CCATACCTGGACT	.	242.0	75.0	166.0	0.0	.	.	.	.	.
SBNO1	55206	hgsc.bcm.edu	37	12	123825580	123825580	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SBNO1	NM_001167856	exon4	c.A606C	p.R202S	CCACATTCTAGCT	.	237.0	66.0	145.0	0.0	.	.	.	.	.
TRHR	7201	hgsc.bcm.edu	37	8	110131669	110131669	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	TRHR,nipple,malignant_melanoma,+1	TRHR	NM_003301	exon2	c.C1182A	p.S394S	GGTATCCTTTAGC	.	297.0	67.0	117.0	0.0	.	.	.	.	.
SSPO	23145	hgsc.bcm.edu	37	7	149485526	149485526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	.	NM_198455	exon27	c.G3932A	p.G1311D	TGGAGGGCTGCTT	.	100.0	26.0	109.0	0.0	.	.	.	.	.
TP53	7157	hgsc.bcm.edu	37	17	7578419	7578419	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	TP53,NS,carcinoma,0	TP53	NM_000546	exon5	c.G511T	p.E171X	CAACCTCCGTCAT	.	64.0	23.0	88.0	0.0	.	.	.	.	.
OSGIN2	734	hgsc.bcm.edu	37	8	90937753	90937753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	OSGIN2	NM_001126111	exon6	c.T1643C	p.I548T	ATGGGATAGCTTA	.	218.0	126.0	81.0	0.0	.	.	.	.	.
SARS2	54938	hgsc.bcm.edu	37	19	39408640	39408640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	SARS2	NM_001145901	exon12	c.G977T	p.C326F	CTGGAGCAAACCA	.	190.0	60.0	140.0	0.0	.	.	.	.	.
ST3GAL1	6482	hgsc.bcm.edu	37	8	134477129	134477129	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EI-01A-11D-A12Z-10	TCGA-DD-A1EI-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c016d025-3c92-41c5-b846-493b1fcce79e	f48e484a-7373-4ffb-bbd7-41c3d2f91d5f	.	ST3GAL1	NM_173344	exon7	c.C575G	p.P192R	CTCTCAGGGTACA	.	336.0	176.0	168.0	0.0	.	.	.	.	.