Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm SKI 6497 hgsc.bcm.edu hg19 1 2234733 2234733 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SKI NM_003036 exon3 c.T1105C p.C369R CTGGGCTGTGTTC . 62.0 4.0 108.0 0.0 . 33 . . Atlas-SNP CASZ1 54897 hgsc.bcm.edu hg19 1 10707949 10707949 + Missense_Mutation SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CASZ1 NM_001079843 exon16 c.G3406A p.V1136M GAGGCACTGACGC . 57.0 4.0 96.0 0.0 . 150 . . Atlas-SNP CASZ1 54897 hgsc.bcm.edu hg19 1 10711116 10711116 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CASZ1 NM_001079843 exon12 c.A2698G p.T900A CTGGGGTGACCTG . 24.0 5.0 47.0 0.0 . 150 . . Atlas-SNP PRAMEF4 400735 hgsc.bcm.edu hg19 1 12942113 12942113 + Missense_Mutation SNP C C T rs78698593 TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 PRAMEF4,NS,carcinoma,0,1 PRAMEF4 NM_001009611 exon3 c.G437A p.R146Q GGCTGCCGTCCTC . 28.0 2.0 59.0 1.0 . 62 . C|0.750;T|0.250 Atlas-SNP PADI3 51702 hgsc.bcm.edu hg19 1 17606886 17606886 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PADI3 NM_016233 exon14 c.T1597C p.S533P GTGCTCTCCAATA . 80.0 5.0 183.0 0.0 . 81 . . Atlas-SNP SRRM1 10250 hgsc.bcm.edu hg19 1 24995725 24995725 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SRRM1 NM_005839 exon14 c.T1851C p.P617P TTCACCTCCTCCC . 124.0 5.0 196.0 0.0 . 81 . . Atlas-SNP GRIK3 2899 hgsc.bcm.edu hg19 1 37291209 37291209 + Silent SNP G G T rs138685291 byfrequency;alternate_allele TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 GRIK3,caecum,carcinoma,0,2 GRIK3 NM_000831 exon11 c.C1749A p.I583I CCTGGCGATGACG . 37.0 2.0 74.0 0.0 . 195 . G|1.000;A|0.000 Atlas-SNP MACF1 23499 hgsc.bcm.edu hg19 1 39934403 39934403 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . MACF1 NM_012090 exon92 c.A15693G p.R5231R CTGCCGAGGTAAG . 93.0 4.0 148.0 0.0 . 909 . . Atlas-SNP HECTD3 79654 hgsc.bcm.edu hg19 1 45469991 45469991 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . HECTD3 NM_024602 exon17 c.T2201C p.L734P CAGGTCAGCAAGT . 74.0 4.0 143.0 0.0 . 158 . . Atlas-SNP LDLRAD1 388633 hgsc.bcm.edu hg19 1 54474701 54474701 + Missense_Mutation SNP T T G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . LDLRAD1 NM_001010978 exon6 c.A572C p.Q191P CAGTGCTGTACAT . 100.0 4.0 176.0 0.0 . 22 . . Atlas-SNP TTC4 7268 hgsc.bcm.edu hg19 1 55182348 55182348 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TTC4 NM_004623 exon2 c.T187C p.C63R TTGGCTTGTCTCC . 46.0 5.0 75.0 0.0 . 21 . . Atlas-SNP CLCA1 1179 hgsc.bcm.edu hg19 1 86961308 86961308 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CLCA1 NM_001285 exon12 c.T2063C p.V688A GGAGAGTGATACC . 91.0 4.0 125.0 0.0 . 109 . . Atlas-SNP ABCD3 5825 hgsc.bcm.edu hg19 1 94965076 94965076 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ABCD3 NM_002858 exon20 c.T1646C p.V549A ACAATGTCCAGTT . 87.0 4.0 132.0 0.0 . 62 . . Atlas-SNP ALG14 199857 hgsc.bcm.edu hg19 1 95448789 95448789 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ALG14 NM_144988 exon4 c.A494G p.K165R ACTTTCTTTATTC . 107.0 5.0 167.0 0.0 . 13 . . Atlas-SNP AHCYL1 10768 hgsc.bcm.edu hg19 1 110559004 110559004 + Missense_Mutation SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . AHCYL1 NM_006621 exon8 c.C821T p.P274L GTGTTCCGGCCAT . 95.0 4.0 160.0 0.0 . 49 . . Atlas-SNP CEPT1 10390 hgsc.bcm.edu hg19 1 111702071 111702071 + Missense_Mutation SNP G G T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CEPT1 NM_006090 exon3 c.G409T p.G137W ATTGATGGGAAAC . 273.0 11.0 345.0 0.0 . 25 . . Atlas-SNP CHD1L 9557 hgsc.bcm.edu hg19 1 146731569 146731569 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CHD1L NM_004284 exon6 c.A573G p.S191S CTTGTCAGAGGTA . 40.0 4.0 54.0 0.0 . 72 . . Atlas-SNP PGLYRP4 57115 hgsc.bcm.edu hg19 1 153317834 153317834 + Missense_Mutation SNP G G A rs200715095 TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 PGLYRP4,colon,carcinoma,-1,1 PGLYRP4 NM_020393 exon4 c.C164T p.T55M GAGACCGTGGTGG . 45.0 2.0 85.0 0.0 . 45 . . Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155307890 155307890 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ASH1L NM_018489 exon27 c.T8793C p.P2931P TTTTCCAGGGATT . 75.0 4.0 146.0 0.0 . 279 . . Atlas-SNP GPATCH4 54865 hgsc.bcm.edu hg19 1 156565484 156565484 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . GPATCH4 NM_015590 exon8 c.A649G p.K217E CCTCTTTCTGCCT . 77.0 4.0 137.0 0.0 . 34 . . Atlas-SNP ILDR2 387597 hgsc.bcm.edu hg19 1 166891985 166891985 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ILDR2 NM_199351 exon8 c.T1056C p.S352S ATGGAAAGACTGG . 95.0 4.0 148.0 0.0 . 79 . . Atlas-SNP GPR161 23432 hgsc.bcm.edu hg19 1 168066409 168066409 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . GPR161 NM_001267609 exon4 c.A496G p.M166V GTGCCATCACAGC . 72.0 4.0 102.0 0.0 . 56 . . Atlas-SNP CEP350 9857 hgsc.bcm.edu hg19 1 180062484 180062484 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CEP350 NM_014810 exon34 c.A7244G p.K2415R GAGATAAGCCACA . 149.0 6.0 214.0 0.0 . 418 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181759582 181759582 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CACNA1E NM_001205293 exon44 c.A5788G p.S1930G TTCAGGAGTGGCC . 95.0 4.0 143.0 0.0 . 778 . . Atlas-SNP KIF14 9928 hgsc.bcm.edu hg19 1 200572973 200572973 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . KIF14 NM_014875 exon9 c.A1857G p.R619R CTTTAGTCGATCT . 94.0 4.0 148.0 0.0 . 156 . . Atlas-SNP C1orf131 128061 hgsc.bcm.edu hg19 1 231360124 231360124 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . C1orf131 NM_152379 exon7 c.A783G p.S261S TCCATTTGACAAA . 165.0 9.0 220.0 0.0 . 30 . . Atlas-SNP NTPCR 84284 hgsc.bcm.edu hg19 1 233105712 233105712 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . NTPCR NM_032324 exon4 c.A352G p.M118V GGGAAGATGGAGC . 73.0 4.0 130.0 0.0 . 15 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237789001 237789001 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . RYR2 NM_001035 exon40 c.T6063C p.S2021S AAACAGTGATTTA . 114.0 5.0 179.0 0.0 . 1273 . . Atlas-SNP NLRP3 114548 hgsc.bcm.edu hg19 1 247588783 247588783 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . NLRP3 NM_183395 exon3 c.T2038C p.S680P TCACTGTCCCTGG . 85.0 4.0 136.0 0.0 . 286 . . Atlas-SNP MFSD2B 388931 hgsc.bcm.edu hg19 2 24236185 24236185 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . MFSD2B NM_001080473 exon2 c.A127G p.T43A TTCTGTACAAAGG . 41.0 4.0 75.0 0.0 . 45 . . Atlas-SNP ABHD1 84696 hgsc.bcm.edu hg19 2 27351823 27351823 + Missense_Mutation SNP C C A rs370556895 alternate_allele TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ABHD1 NM_032604 exon3 c.C286A p.Q96K ATCCTCCAAACAC . 71.0 8.0 103.0 0.0 . 18 . . Atlas-SNP CAPN14 440854 hgsc.bcm.edu hg19 2 31425080 31425080 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CAPN14 NM_001145122 exon4 c.T334C p.L112L GGTGCAAGGCCAG . 118.0 5.0 164.0 0.0 . 36 . . Atlas-SNP PROKR1 10887 hgsc.bcm.edu hg19 2 68873336 68873336 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PROKR1 NM_138964 exon1 c.T383C p.L128P GCCAGCTCTCCTG . 119.0 5.0 230.0 0.0 . 69 . . Atlas-SNP C2orf78 388960 hgsc.bcm.edu hg19 2 74042293 74042293 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . C2orf78 NM_001080474 exon3 c.T943C p.F315L AAGTCCTTCAGTA . 86.0 4.0 141.0 0.0 . 150 . . Atlas-SNP DQX1 165545 hgsc.bcm.edu hg19 2 74751206 74751206 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . DQX1 NM_133637 exon4 c.T660C p.P220P CACAATAGGAGGA . 81.0 4.0 166.0 0.0 . 95 . . Atlas-SNP ZNF2 7549 hgsc.bcm.edu hg19 2 95843262 95843262 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ZNF2 NM_021088 exon3 c.T68C p.F23S TGGTTTTCACAGA . 80.0 5.0 153.0 0.0 . 21 . . Atlas-SNP SNRNP200 23020 hgsc.bcm.edu hg19 2 96949561 96949561 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SNRNP200 NM_014014 exon32 c.T4574C p.L1525P ATGTGCAGCTCCA . 95.0 4.0 132.0 0.0 . 195 . . Atlas-SNP COA5 493753 hgsc.bcm.edu hg19 2 99217252 99217252 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . . NM_001008215 exon3 c.A188G p.D63G CTGTTATCCAACT . 81.0 4.0 120.0 0.0 . . . . Atlas-SNP ZSWIM2 151112 hgsc.bcm.edu hg19 2 187693106 187693106 + Missense_Mutation SNP C C A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ZSWIM2 NM_182521 exon9 c.G1507T p.V503L ATGACACAGTGGG . 188.0 25.0 238.0 0.0 . 119 . . Atlas-SNP INHA 3623 hgsc.bcm.edu hg19 2 220439447 220439447 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . INHA NM_002191 exon2 c.A300G p.R100R TGCCAGAGGGCTG . 78.0 4.0 113.0 0.0 . 30 . . Atlas-SNP PAX3 5077 hgsc.bcm.edu hg19 2 223086014 223086014 + Silent SNP A A G rs199847426 bycluster TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PAX3 NM_181457 exon6 c.T885C p.P295P AGTGGGAGGGAAC . 110.0 7.0 127.0 0.0 . 106 . . Atlas-SNP PID1 55022 hgsc.bcm.edu hg19 2 229890580 229890580 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PID1 NM_017933 exon4 c.A515G p.N172S CTCACGTTGTGGT . 99.0 4.0 208.0 0.0 . 43 . . Atlas-SNP IQCA1 79781 hgsc.bcm.edu hg19 2 237405864 237405864 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . IQCA1 NM_001270585 exon2 c.T299C p.L100P AGTTCCAGCTCCA . 104.0 5.0 159.0 0.0 . 170 . . Atlas-SNP THUMPD3 25917 hgsc.bcm.edu hg19 3 9425958 9425958 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . THUMPD3 NM_001114092 exon9 c.T1298C p.V433A GCCGTGTCTGCAC . 82.0 4.0 145.0 0.0 . 46 . . Atlas-SNP SLC6A1 6529 hgsc.bcm.edu hg19 3 11072874 11072874 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SLC6A1 NM_003042 exon13 c.T1335C p.Y445Y TATTTATGTCTTC . 92.0 5.0 144.0 0.0 . 88 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266610 41266610 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CTNNB1 NM_001098209 exon4 c.T407C p.V136A ATGCAGTTGTAAA . 69.0 12.0 77.0 0.0 . 4904 . . Atlas-SNP SACM1L 22908 hgsc.bcm.edu hg19 3 45744960 45744960 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SACM1L NM_014016 exon2 c.A63G p.E21E TGTGGAAGCTTGT . 81.0 4.0 137.0 0.0 . 38 . . Atlas-SNP APEH 327 hgsc.bcm.edu hg19 3 49712710 49712710 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . APEH NM_001640 exon3 c.A240G p.G80G TGCAGGACCTGCA . 71.0 4.0 129.0 0.0 . 45 . . Atlas-SNP ARF4 378 hgsc.bcm.edu hg19 3 57563094 57563094 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ARF4 NM_001660 exon4 c.T279C p.D93D GTTGCTATCTACC . 90.0 4.0 175.0 0.0 . 14 . . Atlas-SNP PTPRG 5793 hgsc.bcm.edu hg19 3 62278152 62278152 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PTPRG NM_002841 exon29 c.T4112C p.L1371P AGCAACTGGAGAA . 75.0 4.0 121.0 0.0 . 153 . . Atlas-SNP EPHA3 2042 hgsc.bcm.edu hg19 3 89499441 89499441 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 EPHA3,NS,carcinoma,0,1 EPHA3 NM_005233 exon15 c.T2611C p.F871L CCCAAGTTTGAGC . 104.0 5.0 218.0 1.0 . 501 . . Atlas-SNP CEP97 79598 hgsc.bcm.edu hg19 3 101445525 101445525 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CEP97 NM_024548 exon2 c.A131G p.D44G TTCTGGATAAAAA . 73.0 4.0 95.0 0.0 . 122 . . Atlas-SNP PARP9 83666 hgsc.bcm.edu hg19 3 122274538 122274538 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PARP9 NM_031458 exon4 c.T585C p.H195H AACAGCATGGATG . 84.0 4.0 125.0 0.0 . 72 . . Atlas-SNP TMCC1 23023 hgsc.bcm.edu hg19 3 129370465 129370465 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TMCC1 NM_001017395 exon6 c.A1821G p.V607V GTTGGCTACAGTG . 97.0 4.0 197.0 0.0 . 105 . . Atlas-SNP TMCC1 23023 hgsc.bcm.edu hg19 3 129546875 129546875 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TMCC1 NM_001017395 exon3 c.A347G p.K116R CCTCTCTTCATCT . 77.0 4.0 144.0 0.0 . 105 . . Atlas-SNP ASTE1 28990 hgsc.bcm.edu hg19 3 130733158 130733158 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ASTE1 NM_014065 exon6 c.A1783G p.S595G ATATGCTCAGGAG . 121.0 5.0 225.0 0.0 . 67 . . Atlas-SNP CEP63 80254 hgsc.bcm.edu hg19 3 134270832 134270832 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CEP63 NM_025180 exon13 c.A1445G p.K482R TGATGAAATTGGA . 56.0 4.0 90.0 0.0 . 56 . . Atlas-SNP SLC7A14 57709 hgsc.bcm.edu hg19 3 170198199 170198199 + Silent SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SLC7A14 NM_020949 exon7 c.G1872A p.K624K GGGCAGCTTCTTG . 76.0 4.0 93.0 0.0 . 110 . . Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178943817 178943817 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PIK3CA NM_006218 exon17 c.T2484C p.G828G TCAAGGTCTTGAT . 75.0 4.0 142.0 0.0 . 8460 . . Atlas-SNP ZNF639 51193 hgsc.bcm.edu hg19 3 179051221 179051221 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ZNF639 NM_016331 exon7 c.A469G p.N157D ACAGAAAACAATT . 152.0 7.0 230.0 0.0 . 45 . . Atlas-SNP TNK2 10188 hgsc.bcm.edu hg19 3 195611685 195611685 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TNK2 NM_001010938 exon4 c.A643G p.T215A TCACCGTCTTCCC . 62.0 4.0 143.0 0.0 . 246 . . Atlas-SNP PDE6B 5158 hgsc.bcm.edu hg19 4 629718 629718 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PDE6B NM_001145291 exon3 c.A671G p.H224R TCTATCACCTGAG . 90.0 5.0 124.0 0.0 . 80 . . Atlas-SNP BEND4 389206 hgsc.bcm.edu hg19 4 42119674 42119674 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . BEND4 NM_207406 exon6 c.A1466G p.D489G ACAGCGTCGCTGA . 100.0 4.0 143.0 0.0 . 67 . . Atlas-SNP FIP1L1 81608 hgsc.bcm.edu hg19 4 54265995 54265995 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . FIP1L1 NM_030917 exon10 c.T804C p.L268L TGGGCTTCCACCG . 102.0 5.0 139.0 0.0 . 60 . . Atlas-SNP SULT1E1 6783 hgsc.bcm.edu hg19 4 70719946 70719946 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SULT1E1 NM_005420 exon4 c.A358G p.K120E AATCCTTTTCCCA . 91.0 4.0 167.0 0.0 . 44 . . Atlas-SNP PPEF2 5470 hgsc.bcm.edu hg19 4 76797575 76797575 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PPEF2 NM_006239 exon11 c.A1185G p.E395E CTCCAGTTCCACG . 62.0 5.0 70.0 0.0 . 108 . . Atlas-SNP INPP4B 8821 hgsc.bcm.edu hg19 4 143045901 143045901 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . INPP4B NM_003866 exon20 c.A1733G p.E578G AACTGTTCATACC . 94.0 4.0 102.0 0.0 . 132 . . Atlas-SNP HHIP 64399 hgsc.bcm.edu hg19 4 145636456 145636456 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . HHIP NM_022475 exon10 c.T1552C p.F518L AGGAATTTCCTAA . 95.0 5.0 131.0 0.0 . 100 . . Atlas-SNP ABCE1 6059 hgsc.bcm.edu hg19 4 146030345 146030345 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ABCE1 NM_002940 exon5 c.T349C p.S117P GGAAAGTCAACTG . 57.0 4.0 109.0 0.0 . 47 . . Atlas-SNP LRBA 987 hgsc.bcm.edu hg19 4 151773447 151773447 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . LRBA NM_006726 exon23 c.T3415C p.S1139P CTTCAGATGCAGC . 141.0 6.0 186.0 0.0 . 253 . . Atlas-SNP SFRP2 6423 hgsc.bcm.edu hg19 4 154709740 154709740 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 SFRP2,NS,carcinoma,0,1 SFRP2 NM_003013 exon1 c.T248C p.V83A TTCATGACCAGCG . 78.0 5.0 131.0 0.0 . 45 . . Atlas-SNP ADAM29 11086 hgsc.bcm.edu hg19 4 175898801 175898801 + Missense_Mutation SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ADAM29 NM_001130703 exon4 c.G2125A p.D709N CAGCAAGATGTTC . 55.0 4.0 97.0 0.0 . 262 . . Atlas-SNP WWC2 80014 hgsc.bcm.edu hg19 4 184129212 184129212 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . WWC2 NM_024949 exon3 c.A348G p.E116E GAAGGAACTGTAC . 57.0 4.0 89.0 0.0 . 78 . . Atlas-SNP SLC25A4 291 hgsc.bcm.edu hg19 4 186066951 186066951 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SLC25A4 NM_001151 exon3 c.A637G p.S213G TTTGTGAGCTGGA . 79.0 4.0 130.0 0.0 . 27 . . Atlas-SNP CLPTM1L 81037 hgsc.bcm.edu hg19 5 1341797 1341797 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CLPTM1L NM_030782 exon3 c.T442C p.S148P TATCAGACTCCCC . 95.0 5.0 134.0 0.0 . 60 . . Atlas-SNP ADAMTS16 170690 hgsc.bcm.edu hg19 5 5303777 5303777 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ADAMTS16 NM_139056 exon20 c.T3084C p.A1028A CGACGCTGTCTGC . 94.0 4.0 110.0 0.0 . 543 . . Atlas-SNP CARD6 84674 hgsc.bcm.edu hg19 5 40843572 40843572 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 CARD6,NS,carcinoma,0,1 CARD6 NM_032587 exon2 c.A602G p.E201G GATATGAGGAGCT . 73.0 3.0 75.0 0.0 . 141 . . Atlas-SNP MOCS2 4338 hgsc.bcm.edu hg19 5 52402917 52402917 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . MOCS2 NM_004531 exon3 c.G88T p.E30X ATGGCTCAAAAGC . 58.0 12.0 91.0 0.0 . 28 . . Atlas-SNP SV2C 22987 hgsc.bcm.edu hg19 5 75587051 75587051 + Silent SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SV2C NM_014979 exon7 c.C1143T p.N381N GGTAAACAAAATA . 113.0 5.0 152.0 0.0 . 97 . . Atlas-SNP POU5F2 134187 hgsc.bcm.edu hg19 5 93076777 93076777 + Missense_Mutation SNP A A C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . POU5F2 NM_153216 exon1 c.T493G p.C165G AGCGGCAGATGGT . 45.0 7.0 71.0 0.0 . 10 . . Atlas-SNP ANKRD32 84250 hgsc.bcm.edu hg19 5 93964624 93964624 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ANKRD32 NM_032290 exon2 c.A109G p.S37G ATTAAGAGTGAGG . 83.0 4.0 103.0 0.0 . 117 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127712455 127712455 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . FBN2 NM_001999 exon14 c.T1941C p.F647F CAAGACAAATCCT . 85.0 4.0 160.0 0.0 . 858 . . Atlas-SNP RAPGEF6 51735 hgsc.bcm.edu hg19 5 130769307 130769307 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . RAPGEF6 NM_001164387 exon27 c.T3829C p.S1277P GGCTGGAGTCAGA . 74.0 4.0 101.0 0.0 . 361 . . Atlas-SNP AFF4 27125 hgsc.bcm.edu hg19 5 132222022 132222022 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . AFF4 NM_014423 exon18 c.A3079G p.T1027A TCAGTGTCTTTGA . 118.0 5.0 224.0 0.0 . 120 . . Atlas-SNP JAKMIP2 9832 hgsc.bcm.edu hg19 5 147040867 147040867 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . JAKMIP2 NM_001270941 exon3 c.A271G p.N91D TAAGGTTCTCCCT . 100.0 4.0 163.0 0.0 . 154 . . Atlas-SNP LMAN2 10960 hgsc.bcm.edu hg19 5 176778206 176778206 + Missense_Mutation SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . LMAN2 NM_006816 exon2 c.C283T p.R95C TGCTGCGCTCGTC . 49.0 4.0 106.0 0.0 . 35 . . Atlas-SNP F12 2161 hgsc.bcm.edu hg19 5 176829426 176829426 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 F12,NS,carcinoma,0,1 F12 NM_000505 exon14 c.A1715G p.Q572R GCAGCTTGGTCCT . 42.0 2.0 75.0 0.0 . 35 . . Atlas-SNP RIPK1 8737 hgsc.bcm.edu hg19 6 3105913 3105913 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . RIPK1 NM_003804 exon8 c.A1204G p.N402D AGACAGAATGTGG . 114.0 5.0 171.0 0.0 . 56 . . Atlas-SNP GFOD1 54438 hgsc.bcm.edu hg19 6 13487004 13487004 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . GFOD1 NM_018988 exon1 c.A119G p.E40G AGCTCCTCCGCTT . 78.0 4.0 83.0 0.0 . 38 . . Atlas-SNP PRRC2A 7916 hgsc.bcm.edu hg19 6 31603241 31603241 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PRRC2A NM_004638 exon23 c.A5372G p.E1791G TCACTGAGGTAAG . 98.0 4.0 168.0 0.0 . 152 . . Atlas-SNP RIMS1 22999 hgsc.bcm.edu hg19 6 72960073 72960073 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . RIMS1 NM_014989 exon13 c.T2282C p.V761A TGATTGTAAATGT . 95.0 4.0 174.0 0.0 . 278 . . Atlas-SNP MMS22L 253714 hgsc.bcm.edu hg19 6 97627437 97627437 + Splice_Site SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . MMS22L NM_198468 exon18 c.2385-2A>G . ATGTGCTGTAGAA . 55.0 4.0 61.0 0.0 . 102 . . Atlas-SNP ROS1 6098 hgsc.bcm.edu hg19 6 117718268 117718268 + Missense_Mutation SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ROS1 NM_002944 exon7 c.G589A p.A197T AAGGTGCAGTTTC . 96.0 4.0 158.0 0.0 . 728 . . Atlas-SNP AIMP2 7965 hgsc.bcm.edu hg19 7 6063115 6063115 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . AIMP2 NM_006303 exon4 c.A756G p.K252K AGAAAAAGCCGCT . 94.0 6.0 174.0 0.0 . 32 . . Atlas-SNP OSBPL3 26031 hgsc.bcm.edu hg19 7 24849448 24849448 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . OSBPL3 NM_015550 exon20 c.T2295C p.S765S GGCAGAAGAGGAG . 70.0 4.0 125.0 0.0 . 100 . . Atlas-SNP CCDC129 223075 hgsc.bcm.edu hg19 7 31683097 31683097 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CCDC129 NM_001257968 exon11 c.T2191C p.S731P GGCAGCTCCAGGT . 98.0 5.0 149.0 0.0 . 127 . . Atlas-SNP CAMK2B 816 hgsc.bcm.edu hg19 7 44279251 44279251 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CAMK2B NM_172082 exon13 c.A958G p.T320A CGGTGGTCTGTCT . 35.0 4.0 69.0 0.0 . 56 . . Atlas-SNP EGFR 1956 hgsc.bcm.edu hg19 7 55249014 55249014 + Missense_Mutation SNP A A G rs121913445 alternate_allele TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 .,3 EGFR NM_005228 exon20 c.A2312G p.N771S TGGACAACCCCCA . 48.0 3.0 76.0 0.0 . 20426 . . Atlas-SNP WBSCR17 64409 hgsc.bcm.edu hg19 7 71142270 71142270 + Silent SNP G G A rs145007893 TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 WBSCR17,rectum,carcinoma,+2,1 WBSCR17 NM_022479 exon9 c.G1479A p.P493P GTATCCGTGCCAT . 50.0 3.0 77.0 0.0 . 208 . G|1.000;A|0.000 Atlas-SNP CCL24 6369 hgsc.bcm.edu hg19 7 75442715 75442715 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CCL24 NM_002991 exon2 c.T100C p.C34R ACATGCAGCAGGG . 31.0 4.0 55.0 0.0 . 11 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83610694 83610694 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SEMA3A NM_006080 exon14 c.A1595G p.D532G TAAGGGTCTCGGG . 88.0 5.0 120.0 0.0 . 121 . . Atlas-SNP RINT1 60561 hgsc.bcm.edu hg19 7 105205724 105205724 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . RINT1 NM_021930 exon13 c.A1887G p.R629R TTCCAGATGGTTG . 101.0 5.0 126.0 0.0 . 65 . . Atlas-SNP HBP1 26959 hgsc.bcm.edu hg19 7 106836396 106836396 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . HBP1 NM_001244262 exon9 c.A1215G p.G405G ATCTGGATTCAGT . 123.0 5.0 186.0 0.0 . 31 . . Atlas-SNP STRIP2 57464 hgsc.bcm.edu hg19 7 129079892 129079892 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . . NM_020704 exon2 c.T159C p.F53F GGAGTTTGAGTAT . 169.0 7.0 267.0 0.0 . . . . Atlas-SNP EZH2 2146 hgsc.bcm.edu hg19 7 148507486 148507486 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 EZH2_ENST00000350995,colon,carcinoma,0,2 EZH2 NM_004456 exon17 c.T1968C p.A656A TCTGTCAGCTTCA . 42.0 2.0 53.0 0.0 . 823 . . Atlas-SNP SSPO 23145 hgsc.bcm.edu hg19 7 149500388 149500388 + Silent SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . . NM_198455 exon53 c.C7914T p.S2638S ACCCTCCTGCCTG . 39.0 5.0 48.0 0.0 . . . . Atlas-SNP ASIC3 9311 hgsc.bcm.edu hg19 7 150748946 150748946 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . . NM_020322 exon7 c.A1264G p.T422A TATGAGACCGTGG . 89.0 5.0 144.0 0.0 . . . . Atlas-SNP ANGPT2 285 hgsc.bcm.edu hg19 8 6420324 6420324 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ANGPT2 NM_001118888 exon1 c.T132C p.T44T GAGGAAAGTGTAG . 92.0 4.0 195.0 0.0 . 126 . . Atlas-SNP MTUS1 57509 hgsc.bcm.edu hg19 8 17579296 17579296 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . MTUS1 NM_001001931 exon1 c.T115C p.L39L TCAATAAGGTAGC . 97.0 4.0 168.0 0.0 . 144 . . Atlas-SNP SLC39A14 23516 hgsc.bcm.edu hg19 8 22273319 22273319 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SLC39A14 NM_001135153 exon6 c.T788C p.L263P AGTCGCTTCCCTC . 58.0 4.0 66.0 0.0 . 59 . . Atlas-SNP LRRCC1 85444 hgsc.bcm.edu hg19 8 86022370 86022370 + Silent SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . LRRCC1 NM_033402 exon3 c.C331T p.L111L ATTAATCTGACTA . 107.0 22.0 123.0 0.0 . 212 . . Atlas-SNP TSPYL5 85453 hgsc.bcm.edu hg19 8 98288873 98288873 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TSPYL5 NM_033512 exon1 c.T1200C p.G400G TCCTGGACCTTGC . 157.0 7.0 219.0 0.0 . 48 . . Atlas-SNP FER1L6 654463 hgsc.bcm.edu hg19 8 125094661 125094661 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . FER1L6 NM_001039112 exon33 c.A4353G p.K1451K CAGCAAACACCGA . 71.0 4.0 100.0 0.0 . 268 . . Atlas-SNP SPATA6L 55064 hgsc.bcm.edu hg19 9 4604223 4604223 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SPATA6L NM_001039395 exon10 c.A962G p.Y321C AGAGGGTAGCTTG . 111.0 6.0 155.0 0.0 . 3 . . Atlas-SNP MPDZ 8777 hgsc.bcm.edu hg19 9 13150535 13150535 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . MPDZ NM_003829 exon25 c.T3605C p.L1202S GGTTTCAAGGTTC . 89.0 5.0 157.0 0.0 . 324 . . Atlas-SNP TMC1 117531 hgsc.bcm.edu hg19 9 75403363 75403363 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TMC1 NM_138691 exon14 c.A993G p.A331A AACAGCAGACAAC . 90.0 4.0 122.0 0.0 . 87 . . Atlas-SNP PHF2 5253 hgsc.bcm.edu hg19 9 96429513 96429513 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PHF2 NM_005392 exon17 c.A2339G p.N780S AGTACAACCCCAG . 46.0 5.0 80.0 0.0 . 113 . . Atlas-SNP KIAA0368 23392 hgsc.bcm.edu hg19 9 114184313 114184313 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . KIAA0368 NM_001080398 exon16 c.A1877G p.E626G CGAGTCTCAGGCT . 79.0 4.0 113.0 0.0 . 144 . . Atlas-SNP FKBP15 23307 hgsc.bcm.edu hg19 9 115931901 115931901 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . FKBP15 NM_015258 exon26 c.T3088C p.S1030P TGCAAGACAGTTC . 82.0 4.0 155.0 0.0 . 128 . . Atlas-SNP PRPF4 9128 hgsc.bcm.edu hg19 9 116053283 116053283 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PRPF4 NM_004697 exon13 c.T1362C p.G454G GACTGGTGTCAAG . 89.0 4.0 170.0 0.0 . 56 . . Atlas-SNP ASTN2 23245 hgsc.bcm.edu hg19 9 119625906 119625906 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ASTN2 NM_014010 exon10 c.T1843C p.F615L ACTTGAAGTTGCG . 82.0 6.0 119.0 0.0 . 307 . . Atlas-SNP CNTRL 11064 hgsc.bcm.edu hg19 9 123874744 123874744 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CNTRL NM_007018 exon7 c.A1010G p.Q337R TAAAACAGAAGAC . 76.0 4.0 133.0 0.0 . 161 . . Atlas-SNP ASS1 445 hgsc.bcm.edu hg19 9 133364729 133364729 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ASS1 NM_054012 exon12 c.A848G p.E283G TCTACGAGACCCC . 59.0 5.0 104.0 0.0 . 37 . . Atlas-SNP NUP214 8021 hgsc.bcm.edu hg19 9 134020110 134020110 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . NUP214 NM_005085 exon12 c.A1738G p.T580A CCCTCAACCTCTG . 99.0 5.0 201.0 0.0 . 166 . . Atlas-SNP NDOR1 27158 hgsc.bcm.edu hg19 9 140110580 140110580 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . NDOR1 NM_001144026 exon13 c.A1616G p.E539G TCCGGGAGCTGGG . 53.0 4.0 95.0 0.0 . 71 . . Atlas-SNP KLF6 1316 hgsc.bcm.edu hg19 10 3824046 3824046 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . KLF6 NM_001160125 exon2 c.A463G p.S155G CCCTGCTCAGTTC . 68.0 4.0 87.0 0.0 . 38 . . Atlas-SNP BEND7 222389 hgsc.bcm.edu hg19 10 13541881 13541881 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . BEND7 NM_001100912 exon2 c.T189C p.G63G CCACACACCACGT . 118.0 7.0 188.0 0.0 . 85 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 17024537 17024537 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CUBN NM_001081 exon31 c.T4641C p.R1547R GAGAACACGATGA . 58.0 7.0 87.0 0.0 . 515 . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 17153015 17153015 + Missense_Mutation SNP G G C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CUBN NM_001081 exon9 c.C918G p.I306M TTCATTGATATCT . 65.0 11.0 109.0 0.0 . 515 . . Atlas-SNP WDFY4 57705 hgsc.bcm.edu hg19 10 50149852 50149852 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . WDFY4 NM_020945 exon48 c.A7588G p.R2530G CACAGGAGATACC . 94.0 4.0 143.0 0.0 . 205 . . Atlas-SNP C10orf71 118461 hgsc.bcm.edu hg19 10 50530756 50530756 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . C10orf71 NM_001135196 exon3 c.T166C p.S56P GCTGTGTCCCCGG . 94.0 4.0 135.0 0.0 . 179 . . Atlas-SNP NCOA4 8031 hgsc.bcm.edu hg19 10 51582886 51582886 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 NCOA4_ENST00000452682,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1 NCOA4 NM_001145261 exon8 c.A709G p.S237G ATACCCAGCACCG . 47.0 2.0 96.0 0.0 . 58 . . Atlas-SNP SGMS1 259230 hgsc.bcm.edu hg19 10 52071024 52071024 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SGMS1 NM_147156 exon9 c.A893G p.E298G TTACACTCTTTGA . 57.0 4.0 89.0 0.0 . 40 . . Atlas-SNP HK1 3098 hgsc.bcm.edu hg19 10 71144583 71144583 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . HK1 NM_033498 exon15 c.A1763G p.D588G TCTCTGACTTCTT . 78.0 4.0 144.0 0.0 . 170 . . Atlas-SNP TSPAN15 23555 hgsc.bcm.edu hg19 10 71255355 71255355 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TSPAN15 NM_012339 exon4 c.T363C p.I121I GACCATTGACTTC . 86.0 4.0 152.0 0.0 . 22 . . Atlas-SNP CDH23 64072 hgsc.bcm.edu hg19 10 73375278 73375278 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CDH23 NM_052836 exon10 c.T850C p.F284L AGCATCTTTGCCC . 72.0 4.0 117.0 0.0 . 365 . . Atlas-SNP BTAF1 9044 hgsc.bcm.edu hg19 10 93718881 93718881 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . BTAF1 NM_003972 exon9 c.T960C p.G320G AAGTGGTGGTAAA . 90.0 4.0 183.0 0.0 . 148 . . Atlas-SNP PLCE1 51196 hgsc.bcm.edu hg19 10 96076426 96076426 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PLCE1 NM_016341 exon29 c.T6255C p.G2085G CATTGGTCCAGAA . 100.0 4.0 118.0 0.0 . 543 . . Atlas-SNP DNMBP 23268 hgsc.bcm.edu hg19 10 101668878 101668878 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . DNMBP NM_015221 exon5 c.T2286C p.S762S TGATGAAGACTGG . 84.0 4.0 121.0 0.0 . 173 . . Atlas-SNP TTC40 54777 hgsc.bcm.edu hg19 10 134672635 134672635 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TTC40 NM_001200049 exon38 c.T5315C p.I1772T CAGTCGATAAACT . 74.0 4.0 162.0 0.0 . 100 . . Atlas-SNP TRPM5 29850 hgsc.bcm.edu hg19 11 2438955 2438955 + Splice_Site SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TRPM5 NM_014555 exon8 c.1009+2T>C . GCCCTCACCTTTC . 63.0 4.0 94.0 0.0 . 86 . . Atlas-SNP CHRNA10 57053 hgsc.bcm.edu hg19 11 3687610 3687610 + Silent SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 CHRNA10,colon,carcinoma,0,1 CHRNA10 NM_020402 exon5 c.C1080T p.S360S TGGCCTGGACTGC . 32.0 2.0 48.0 0.0 . 31 . . Atlas-SNP NUP98 4928 hgsc.bcm.edu hg19 11 3720345 3720345 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . NUP98 NM_016320 exon25 c.A3976G p.I1326V CACTGATCCTTTT . 94.0 8.0 139.0 0.0 . 149 . . Atlas-SNP NUP98 4928 hgsc.bcm.edu hg19 11 3746442 3746442 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . NUP98 NM_005387 exon15 c.A1789G p.I597V TCTTAATGCTCTT . 88.0 4.0 117.0 0.0 . 149 . . Atlas-SNP ANO3 63982 hgsc.bcm.edu hg19 11 26656592 26656592 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ANO3 NM_031418 exon20 c.T2018C p.L673P ATAAACTTTTTGA . 112.0 5.0 212.0 0.0 . 145 . . Atlas-SNP OR5M9 390162 hgsc.bcm.edu hg19 11 56230291 56230291 + Missense_Mutation SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . OR5M9 NM_001004743 exon1 c.C587T p.T196I ATCATTGTGATTT . 79.0 4.0 106.0 0.0 . 75 . . Atlas-SNP OR5B2 390190 hgsc.bcm.edu hg19 11 58190477 58190477 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . OR5B2 NM_001005566 exon1 c.A258G p.G86G CTTGTCTCCTCTA . 89.0 6.0 136.0 0.0 . 75 . . Atlas-SNP METTL12 751071 hgsc.bcm.edu hg19 11 62434058 62434058 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . METTL12 NM_001043229 exon3 c.T258C p.T86T TGGGACTTCCAGC . 77.0 5.0 87.0 0.0 . 11 . . Atlas-SNP SLC25A45 283130 hgsc.bcm.edu hg19 11 65147388 65147388 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SLC25A45 NM_182556 exon4 c.A103G p.T35A GGTAGGTGGTCTG . 63.0 4.0 102.0 0.0 . 23 . . Atlas-SNP FCHSD2 9873 hgsc.bcm.edu hg19 11 72551945 72551945 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . FCHSD2 NM_014824 exon19 c.A2116G p.T706A ATGAGGTCTCAGG . 61.0 5.0 105.0 0.0 . 106 . . Atlas-SNP ARHGEF17 9828 hgsc.bcm.edu hg19 11 73073127 73073127 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ARHGEF17 NM_014786 exon13 c.T4537C p.S1513P GAGCCCTCGCCTG . 51.0 5.0 113.0 0.0 . 117 . . Atlas-SNP ESAM 90952 hgsc.bcm.edu hg19 11 124624658 124624658 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ESAM NM_138961 exon5 c.T609C p.D203D GATGACATCTGTG . 88.0 5.0 124.0 0.0 . 31 . . Atlas-SNP KIRREL3 84623 hgsc.bcm.edu hg19 11 126318909 126318909 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . KIRREL3 NM_032531 exon8 c.T992C p.V331A CAGTAGACGTCAA . 54.0 4.0 68.0 0.0 . 183 . . Atlas-SNP NTF3 4908 hgsc.bcm.edu hg19 12 5603792 5603792 + Missense_Mutation SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 NTF3,NS,carcinoma,-1,2 NTF3 NM_001102654 exon2 c.C451T p.R151W CGGAAACGGTACG . 41.0 2.0 70.0 0.0 . 50 . . Atlas-SNP PTPRO 5800 hgsc.bcm.edu hg19 12 15654901 15654901 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PTPRO NM_002848 exon5 c.T1009C p.S337P TCAGGCTCTTTCT . 95.0 4.0 129.0 0.0 . 148 . . Atlas-SNP REP15 387849 hgsc.bcm.edu hg19 12 27849605 27849605 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 REP15,right_upper_lobe,carcinoma,0,1 REP15 NM_001029874 exon1 c.A110G p.E37G TGAAGGAGTACCT . 73.0 3.0 82.0 0.0 . 13 . . Atlas-SNP PDZRN4 29951 hgsc.bcm.edu hg19 12 41967381 41967381 + Nonsense_Mutation SNP G G T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 PDZRN4,colon,carcinoma,0,1 PDZRN4 NM_001164595 exon10 c.G2800T p.E934X ATGAGCGAGATGA . 44.0 2.0 82.0 0.0 . 346 . . Atlas-SNP ADCY6 112 hgsc.bcm.edu hg19 12 49177177 49177177 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ADCY6 NM_020983 exon2 c.A41G p.E14G TTCCGTTCATCCA . 66.0 4.0 113.0 0.0 . 81 . . Atlas-SNP TUBA1B 10376 hgsc.bcm.edu hg19 12 49522077 49522077 + Silent SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TUBA1B NM_006082 exon4 c.C1020T p.S340S CTGGATGCTGCGC . 182.0 32.0 282.0 0.0 . 24 . . Atlas-SNP SCN8A 6334 hgsc.bcm.edu hg19 12 52056675 52056675 + Missense_Mutation SNP T T G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SCN8A NM_014191 exon2 c.T74G p.I25S CAAACATTGAGAG . 52.0 4.0 66.0 0.0 . 331 . . Atlas-SNP EIF4B 1975 hgsc.bcm.edu hg19 12 53413702 53413702 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . EIF4B NM_001417 exon4 c.A369G p.A123A CAGTGCAGTGCGT . 97.0 4.0 156.0 0.0 . 38 . . Atlas-SNP CD63 967 hgsc.bcm.edu hg19 12 56120684 56120684 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CD63 NM_001257390 exon4 c.T320C p.F107S TCTCTAAACACAT . 91.0 4.0 127.0 0.0 . 13 . . Atlas-SNP DGKA 1606 hgsc.bcm.edu hg19 12 56345833 56345833 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . DGKA NM_201554 exon19 c.T1602C p.A534A TATTGCTCATCGA . 73.0 5.0 121.0 0.0 . 70 . . Atlas-SNP PMEL 6490 hgsc.bcm.edu hg19 12 56355450 56355450 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PMEL NM_001200054 exon2 c.T143C p.L48P GGATACAGCTGCC . 88.0 4.0 125.0 0.0 . 60 . . Atlas-SNP GLI1 2735 hgsc.bcm.edu hg19 12 57865654 57865654 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . GLI1 NM_005269 exon12 c.A3131G p.N1044S TTGACAACACTCA . 77.0 4.0 120.0 0.0 . 141 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 71016408 71016408 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PTPRB NM_001109754 exon3 c.T470C p.V157A ACCGAAACTTCTG . 85.0 4.0 124.0 0.0 . 676 . . Atlas-SNP PWP1 11137 hgsc.bcm.edu hg19 12 108105903 108105903 + Missense_Mutation SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PWP1 NM_007062 exon15 c.G1412A p.G471E CATTTGGAAGACG . 94.0 4.0 130.0 0.0 . 43 . . Atlas-SNP USP30 84749 hgsc.bcm.edu hg19 12 109522828 109522828 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . USP30 NM_032663 exon12 c.A1239G p.P413P ATTGCCAACGCTG . 49.0 5.0 67.0 0.0 . 48 . . Atlas-SNP ATP2A2 488 hgsc.bcm.edu hg19 12 110784133 110784133 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ATP2A2 NM_170665 exon20 c.A2987G p.E996G GTAAAGAGTGTGT . 80.0 4.0 153.0 0.0 . 78 . . Atlas-SNP MED13L 23389 hgsc.bcm.edu hg19 12 116413459 116413459 + Missense_Mutation SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . MED13L NM_015335 exon24 c.G5449A p.G1817S CCTCACCAAACGT . 75.0 4.0 138.0 0.0 . 193 . . Atlas-SNP TMEM132D 121256 hgsc.bcm.edu hg19 12 130184598 130184598 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TMEM132D NM_133448 exon2 c.A725G p.E242G GCGTCTTCCCTGA . 93.0 4.0 124.0 0.0 . 299 . . Atlas-SNP ULK1 8408 hgsc.bcm.edu hg19 12 132404542 132404542 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ULK1 NM_003565 exon26 c.A2822G p.E941G TGAATGAGCTGTA . 91.0 4.0 127.0 0.0 . 92 . . Atlas-SNP B3GALTL 145173 hgsc.bcm.edu hg19 13 31850851 31850851 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . B3GALTL NM_194318 exon10 c.A793G p.K265E CCAGTGAAGAAGA . 62.0 4.0 91.0 0.0 . 48 . . Atlas-SNP N4BP2L2 10443 hgsc.bcm.edu hg19 13 33111159 33111159 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . N4BP2L2 NM_033111 exon2 c.T6C p.S2S ACCATAAGACATC . 50.0 4.0 78.0 0.0 . 90 . . Atlas-SNP ALG5 29880 hgsc.bcm.edu hg19 13 37524168 37524168 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ALG5 NM_013338 exon10 c.T886C p.W296R GTAGCCAGCTCCA . 56.0 4.0 52.0 0.0 . 28 . . Atlas-SNP SUGT1 10910 hgsc.bcm.edu hg19 13 53237230 53237230 + Splice_Site SNP G G C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SUGT1 NM_001130912 exon8 c.479-1G>C . TTAATAGGCTCAG . 187.0 16.0 278.0 0.0 . 37 . . Atlas-SNP TDRD3 81550 hgsc.bcm.edu hg19 13 61102826 61102826 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TDRD3 NM_001146070 exon11 c.T1467C p.S489S AGGTTCTCAGCAT . 85.0 4.0 115.0 0.0 . 123 . . Atlas-SNP IPO5 3843 hgsc.bcm.edu hg19 13 98637853 98637853 + Missense_Mutation SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . IPO5 NM_002271 exon6 c.C404T p.A135V AACTGGCCAGGAA . 124.0 5.0 156.0 0.0 . 90 . . Atlas-SNP FARP1 10160 hgsc.bcm.edu hg19 13 99063059 99063059 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . FARP1 NM_005766 exon15 c.T1674C p.D558D GAAGGATCTCGAA . 148.0 6.0 224.0 0.0 . 207 . . Atlas-SNP CHAMP1 283489 hgsc.bcm.edu hg19 13 115089644 115089644 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . . NM_001164144 exon3 c.T327C p.P109P AAGCCCTCCTCTT . 158.0 24.0 268.0 0.0 . . . . Atlas-SNP MYH6 4624 hgsc.bcm.edu hg19 14 23862189 23862189 + Silent SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . MYH6 NM_002471 exon24 c.G3183A p.L1061L CAGCTTCAGGTCG . 93.0 4.0 121.0 0.0 . 274 . . Atlas-SNP EIF2S1 1965 hgsc.bcm.edu hg19 14 67841207 67841207 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . EIF2S1 NM_004094 exon3 c.A264G p.R88R AAAAAGAAGAGTT . 97.0 4.0 196.0 0.0 . 17 . . Atlas-SNP RBM25 58517 hgsc.bcm.edu hg19 14 73569996 73569996 + Silent SNP A A C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . RBM25 NM_021239 exon10 c.A964C p.R322R CGAGAAAGGCGAG . 94.0 4.0 194.0 0.0 . 81 . . Atlas-SNP CPSF2 53981 hgsc.bcm.edu hg19 14 92621560 92621560 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CPSF2 NM_017437 exon11 c.T1335C p.G445G GAAAGGTGAAGGC . 117.0 5.0 135.0 0.0 . 63 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94038391 94038391 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . UNC79 NM_020818 exon15 c.T1376C p.V459A CAGAAGTCCCAGA . 46.0 4.0 75.0 0.0 . 366 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94088335 94088335 + Missense_Mutation SNP A A G rs149602204 TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 UNC79,NS,carcinoma,0,2 UNC79 NM_020818 exon30 c.A4225G p.M1409V AACTGTATGGAGA . 95.0 4.0 165.0 0.0 . 366 . A|1.000;G|0.000 Atlas-SNP DDX24 57062 hgsc.bcm.edu hg19 14 94528810 94528810 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . DDX24 NM_020414 exon3 c.A876G p.E292E CTCAGCTTCAGCC . 86.0 4.0 126.0 0.0 . 82 . . Atlas-SNP RCOR1 23186 hgsc.bcm.edu hg19 14 103173693 103173693 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . RCOR1 NM_015156 exon5 c.T504C p.L168L GGCTCTTGGGATG . 83.0 4.0 141.0 0.0 . 39 . . Atlas-SNP CDC42BPB 9578 hgsc.bcm.edu hg19 14 103438401 103438401 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CDC42BPB NM_006035 exon13 c.T1739C p.L580P TCGTTCAGCTCCG . 73.0 4.0 168.0 0.0 . 123 . . Atlas-SNP CEP170B 283638 hgsc.bcm.edu hg19 14 105344813 105344813 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . . NM_001112726 exon5 c.A308G p.H103R TGCAGCACCGAGT . 51.0 4.0 66.0 0.0 . . . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 34130147 34130147 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . RYR3 NM_001036 exon89 c.A11966G p.D3989G CCAAGGACATAGG . 137.0 6.0 184.0 0.0 . 760 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48712988 48712988 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . FBN1 NM_000138 exon63 c.A7715G p.E2572G TTACCCTCACACT . 41.0 4.0 46.0 0.0 . 310 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48752514 48752514 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . FBN1 NM_000138 exon43 c.A5225G p.D1742G AACTCATCTGCAA . 72.0 5.0 87.0 0.0 . 310 . . Atlas-SNP USP50 373509 hgsc.bcm.edu hg19 15 50833284 50833284 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . USP50 NM_203494 exon4 c.T622C p.S208P GGAGTGAGAAGAC . 103.0 5.0 164.0 0.0 . 24 . . Atlas-SNP NARG2 79664 hgsc.bcm.edu hg19 15 60742037 60742037 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . NARG2 NM_024611 exon10 c.T1129C p.S377P CACAGGACATCTT . 56.0 4.0 77.0 0.0 . 82 . . Atlas-SNP CYP1A2 1544 hgsc.bcm.edu hg19 15 75047231 75047231 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CYP1A2 NM_000761 exon7 c.T1353C p.F451F GCTGTTTGGCATG . 64.0 8.0 151.0 0.0 . 70 . . Atlas-SNP SNX33 257364 hgsc.bcm.edu hg19 15 75941871 75941871 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SNX33 NM_153271 exon1 c.T428C p.L143P CTCCCCTCAACCT . 78.0 6.0 104.0 0.0 . 43 . . Atlas-SNP RASGRF1 5923 hgsc.bcm.edu hg19 15 79307690 79307690 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . RASGRF1 NM_001145648 exon13 c.T1805C p.V602A ACAGTGACCTTGG . 79.0 6.0 124.0 0.0 . 168 . . Atlas-SNP ACAN 176 hgsc.bcm.edu hg19 15 89402123 89402123 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 AGC1,NS,carcinoma,0,2 ACAN NM_001135 exon12 c.A6307G p.T2103A AGTGAGACGTCCG . 43.0 3.0 62.0 0.0 . 220 . . Atlas-SNP PLIN1 5346 hgsc.bcm.edu hg19 15 90210343 90210343 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PLIN1 NM_001145311 exon8 c.A1033G p.T345A TGGTGGTCTGGAG . 97.0 4.0 126.0 0.0 . 36 . . Atlas-SNP IDH2 3418 hgsc.bcm.edu hg19 15 90628063 90628063 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . IDH2 NM_002168 exon10 c.T1256C p.I419T CCGTGAATGCAGC . 69.0 4.0 87.0 0.0 . 1372 . . Atlas-SNP TPSG1 25823 hgsc.bcm.edu hg19 16 1271981 1271981 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TPSG1 NM_012467 exon6 c.T773C p.V258A GCAGGGACACGAG . 80.0 7.0 146.0 0.0 . 19 . . Atlas-SNP ABCC6 368 hgsc.bcm.edu hg19 16 16308279 16308279 + Missense_Mutation SNP G G C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ABCC6 NM_001171 exon5 c.C502G p.L168V TGGACAGGTGGCG . 159.0 7.0 277.0 0.0 . 110 . . Atlas-SNP TMC5 79838 hgsc.bcm.edu hg19 16 19505602 19505602 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TMC5 NM_001105248 exon20 c.T2845C p.F949L AAAATGTTCCTGA . 84.0 5.0 194.0 0.0 . 169 . . Atlas-SNP CCP110 9738 hgsc.bcm.edu hg19 16 19556463 19556463 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CCP110 NM_001199022 exon10 c.T2634C p.D878D AATGGATGCAGCT . 78.0 4.0 118.0 0.0 . 57 . . Atlas-SNP ZNF720 124411 hgsc.bcm.edu hg19 16 31734663 31734663 + Missense_Mutation SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ZNF720 NM_001130913 exon3 c.C215T p.A72V CAGTAGCCATCCA . 77.0 4.0 121.0 0.0 . 15 . . Atlas-SNP ZNF267 10308 hgsc.bcm.edu hg19 16 31926978 31926978 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ZNF267 NM_003414 exon4 c.A1408G p.S470G GTATGTAGCAAAT . 85.0 4.0 118.0 0.0 . 94 . . Atlas-SNP N4BP1 9683 hgsc.bcm.edu hg19 16 48596262 48596262 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . N4BP1 NM_153029 exon2 c.T292C p.F98L TCAGAAACAGGCT . 99.0 4.0 162.0 0.0 . 121 . . Atlas-SNP NUP93 9688 hgsc.bcm.edu hg19 16 56852599 56852599 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . NUP93 NM_014669 exon6 c.A513G p.G171G TGTGGGACCCCCT . 86.0 5.0 155.0 0.0 . 75 . . Atlas-SNP CNOT1 23019 hgsc.bcm.edu hg19 16 58576414 58576414 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CNOT1 NM_016284 exon32 c.A4493G p.D1498G CAATTGTCCTGAG . 125.0 5.0 248.0 0.0 . 359 . . Atlas-SNP COG8 84342 hgsc.bcm.edu hg19 16 69368967 69368967 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . COG8 NM_032382 exon3 c.T870C p.R290R GATGGCACGGTAC . 96.0 4.0 172.0 0.0 . 32 . . Atlas-SNP TXNL4B 54957 hgsc.bcm.edu hg19 16 72120695 72120695 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TXNL4B NM_001142318 exon4 c.A291G p.P97P GTGATCTGGAGAT . 109.0 5.0 157.0 0.0 . 17 . . Atlas-SNP DHX38 9785 hgsc.bcm.edu hg19 16 72135463 72135463 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . DHX38 NM_014003 exon11 c.A1451G p.E484G AGAAGGAGGAAGA . 74.0 5.0 119.0 0.0 . 91 . . Atlas-SNP ZC3H18 124245 hgsc.bcm.edu hg19 16 88666240 88666240 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ZC3H18 NM_144604 exon6 c.T972C p.D324D GCCTGATTTTGAA . 64.0 4.0 106.0 0.0 . 90 . . Atlas-SNP FBXO39 162517 hgsc.bcm.edu hg19 17 6690124 6690124 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . FBXO39 NM_153230 exon3 c.A1049G p.N350S ACAACAACCATGA . 114.0 5.0 177.0 0.0 . 50 . . Atlas-SNP ALOXE3 59344 hgsc.bcm.edu hg19 17 8006758 8006758 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ALOXE3 NM_001165960 exon15 c.A2235G p.P745P CTGGGGTGGGGGC . 117.0 5.0 167.0 0.0 . 145 . . Atlas-SNP ULK2 9706 hgsc.bcm.edu hg19 17 19705089 19705089 + Splice_Site SNP C C A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ULK2 NM_014683 exon17 c.1441+1G>T . TACTTACCCAAAG . 71.0 8.0 98.0 0.0 . 142 . . Atlas-SNP EFCAB5 374786 hgsc.bcm.edu hg19 17 28378143 28378143 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 EFCAB5,colon,carcinoma,0,1 EFCAB5 NM_198529 exon9 c.T1208C p.F403S TAGGGTTTTTGGA . 68.0 3.0 140.0 0.0 . 122 . . Atlas-SNP TCAP 8557 hgsc.bcm.edu hg19 17 37822111 37822111 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TCAP NM_003673 exon2 c.T253C p.Y85H CTGCCCTACCAGC . 43.0 8.0 56.0 0.0 . 12 . . Atlas-SNP BRCA1 672 hgsc.bcm.edu hg19 17 41228506 41228506 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . BRCA1 NM_007300 exon14 c.A4546G p.R1516G CTTACCTTTCCAC . 84.0 4.0 161.0 0.0 . 304 . . Atlas-SNP STXBP4 252983 hgsc.bcm.edu hg19 17 53155463 53155463 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . STXBP4 NM_178509 exon14 c.A1213G p.R405G AAAAAGAGAATCA . 121.0 5.0 154.0 0.0 . 41 . . Atlas-SNP ANKFN1 162282 hgsc.bcm.edu hg19 17 54428134 54428134 + Missense_Mutation SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 ANKFN1,rectum,carcinoma,0,1 ANKFN1 NM_153228 exon4 c.C205T p.R69C AATTGTCGTGTGA . 49.0 2.0 106.0 0.0 . 115 . . Atlas-SNP SEPT4 5414 hgsc.bcm.edu hg19 17 56598359 56598359 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SEPT4 NM_001256782 exon11 c.A1322G p.N441S TCATACTTGCGAT . 94.0 5.0 152.0 0.0 . 48 . . Atlas-SNP SLC39A11 201266 hgsc.bcm.edu hg19 17 71027829 71027829 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SLC39A11 NM_001159770 exon4 c.T172C p.S58P GAAGAGACCAATA . 64.0 5.0 125.0 0.0 . 32 . . Atlas-SNP OTOP3 347741 hgsc.bcm.edu hg19 17 72939421 72939421 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . OTOP3 NM_178233 exon4 c.T668C p.V223A TTCGGGTCCAGAC . 100.0 4.0 137.0 0.0 . 64 . . Atlas-SNP UNK 85451 hgsc.bcm.edu hg19 17 73820373 73820373 + Missense_Mutation SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 UNK_ENST00000293218,NS,carcinoma,0,2 UNK NM_001080419 exon16 c.C2308T p.L770F AAATGCCTTAAGT . 37.0 3.0 54.0 0.0 . 87 . . Atlas-SNP TMC8 147138 hgsc.bcm.edu hg19 17 76134220 76134220 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TMC8 NM_152468 exon12 c.T1484C p.L495P CCCTGCTGCCCCT . 112.0 5.0 162.0 0.0 . 44 . . Atlas-SNP LRRC45 201255 hgsc.bcm.edu hg19 17 79986334 79986334 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . LRRC45 NM_144999 exon11 c.A1187G p.E396G GGCAGGAGATGAC . 85.0 4.0 148.0 0.0 . 22 . . Atlas-SNP SMCHD1 23347 hgsc.bcm.edu hg19 18 2728556 2728556 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SMCHD1 NM_015295 exon23 c.A2875G p.N959D TCAGACAACATAA . 81.0 5.0 124.0 0.0 . 88 . . Atlas-SNP LAMA1 284217 hgsc.bcm.edu hg19 18 7016513 7016513 + Missense_Mutation SNP G G T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . LAMA1 NM_005559 exon21 c.C2966A p.A989D TGGTAGGCGTAGA . 56.0 10.0 66.0 0.0 . 458 . . Atlas-SNP SOGA2 23255 hgsc.bcm.edu hg19 18 8718551 8718551 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . . NM_015210 exon3 c.T103C p.Y35H CTGCAGTACCGTC . 81.0 5.0 119.0 0.0 . . . . Atlas-SNP IMPACT 55364 hgsc.bcm.edu hg19 18 22029801 22029801 + Missense_Mutation SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . IMPACT NM_018439 exon10 c.G778A p.V260I AAGAATGTCATGG . 93.0 11.0 123.0 0.0 . 37 . . Atlas-SNP DSG3 1830 hgsc.bcm.edu hg19 18 29045290 29045290 + Missense_Mutation SNP G G C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . DSG3 NM_001944 exon10 c.G1281C p.M427I TGTCATGGGACGT . 179.0 12.0 277.0 0.0 . 172 . . Atlas-SNP ASXL3 80816 hgsc.bcm.edu hg19 18 31320168 31320168 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 ASXL3_ENST00000269197,caecum,carcinoma,0,2 ASXL3 NM_030632 exon11 c.T2800C p.L934L AGTCGGTTAGAAA . 120.0 6.0 137.0 1.0 . 405 . . Atlas-SNP SETBP1 26040 hgsc.bcm.edu hg19 18 42281540 42281540 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SETBP1 NM_001130110 exon2 c.A229G p.S77G GCGGACAGTGAGA . 108.0 5.0 183.0 0.0 . 577 . . Atlas-SNP PHLPP1 23239 hgsc.bcm.edu hg19 18 60625874 60625874 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 PHLPP1_ENST00000262719,colon,carcinoma,0,3 PHLPP1 NM_194449 exon13 c.A3337G p.S1113G GACCTGAGCTGTA . 61.0 3.0 105.0 0.0 . 164 . . Atlas-SNP SHD 56961 hgsc.bcm.edu hg19 19 4280256 4280256 + Missense_Mutation SNP C C T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 SHD,NS,carcinoma,0,1 SHD NM_020209 exon1 c.C196T p.P66S AAGAACCCCGGAG . 42.0 2.0 71.0 0.0 . 33 . . Atlas-SNP FEM1A 55527 hgsc.bcm.edu hg19 19 4792763 4792763 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . FEM1A NM_018708 exon1 c.A897G p.E299E CGTGGAAGCCTTG . 71.0 4.0 153.0 0.0 . 41 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9048766 9048766 + Silent SNP A A G rs370340214 alternate_allele TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . MUC16 NM_024690 exon5 c.T32865C p.S10955S ACCAAGAGAAAAA . 93.0 4.0 158.0 0.0 . 4315 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9070574 9070574 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . MUC16 NM_024690 exon3 c.T16872C p.P5624P TTCCACAGGGGGA . 99.0 4.0 111.0 0.0 . 4315 . . Atlas-SNP KLF1 10661 hgsc.bcm.edu hg19 19 12995833 12995833 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 KLF1,NS,carcinoma,0,1 KLF1 NM_006563 exon3 c.A955G p.R319G CGAATCTCCAGCC . 30.0 2.0 46.0 1.0 . 15 . . Atlas-SNP ZNF493 284443 hgsc.bcm.edu hg19 19 21607389 21607389 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ZNF493 NM_001076678 exon4 c.A1928G p.H643R CCTCACACCTCGC . 113.0 5.0 154.0 0.0 . 178 . . Atlas-SNP GPATCH1 55094 hgsc.bcm.edu hg19 19 33579153 33579153 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . GPATCH1 NM_018025 exon2 c.A187G p.N63D TACTTCAATACTG . 100.0 4.0 200.0 0.0 . 79 . . Atlas-SNP KIRREL2 84063 hgsc.bcm.edu hg19 19 36350514 36350514 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . KIRREL2 NM_199180 exon5 c.T654C p.A218A CACAGCTATCACA . 40.0 4.0 40.0 0.0 . 170 . . Atlas-SNP ZNF383 163087 hgsc.bcm.edu hg19 19 37733879 37733879 + Silent SNP C C T rs367688274 alternate_allele TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 ZNF383,NS,NS,0,1 ZNF383 NM_152604 exon5 c.C741T p.I247I GAGAATCCATACC . 66.0 3.0 87.0 1.0 . 42 . . Atlas-SNP CYP2F1 1572 hgsc.bcm.edu hg19 19 41622142 41622142 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CYP2F1 NM_000774 exon2 c.T49C p.C17R CTCGTCTGTCTGC . 76.0 4.0 148.0 0.0 . 60 . . Atlas-SNP CIC 23152 hgsc.bcm.edu hg19 19 42793506 42793506 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CIC NM_015125 exon8 c.T1308C p.S436S GACGAGTGATGAG . 72.0 4.0 143.0 0.0 . 249 . . Atlas-SNP TMEM145 284339 hgsc.bcm.edu hg19 19 42818606 42818606 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TMEM145 NM_173633 exon3 c.A199G p.K67E CAGGCCAAGTGCT . 61.0 4.0 103.0 0.0 . 55 . . Atlas-SNP TEX101 83639 hgsc.bcm.edu hg19 19 43920572 43920572 + Missense_Mutation SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TEX101 NM_031451 exon7 c.G310A p.E104K GAAGGGGAGGAGG . 108.0 17.0 138.0 0.0 . 28 . . Atlas-SNP RASIP1 54922 hgsc.bcm.edu hg19 19 49238547 49238547 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . RASIP1 NM_017805 exon4 c.A1085G p.D362G CCGGGGTCTGCAG . 115.0 6.0 147.0 0.0 . 80 . . Atlas-SNP DHDH 27294 hgsc.bcm.edu hg19 19 49442937 49442937 + Missense_Mutation SNP G G T rs35453148 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 DHDH,brainstem,primitive_neuroectodermal_tumour-medulloblastoma,0,1 DHDH NM_014475 exon4 c.G598T p.V200L TCTGTCGTGGGAA . 32.0 4.0 52.0 0.0 . 35 . G|0.997;A|0.003 Atlas-SNP ZNF320 162967 hgsc.bcm.edu hg19 19 53384285 53384285 + Missense_Mutation SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ZNF320 NM_207333 exon4 c.C1094T p.A365V CGGAAAGCCTTGT . 111.0 5.0 157.0 0.0 . 67 . . Atlas-SNP CACNG7 59284 hgsc.bcm.edu hg19 19 54418669 54418669 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 CACNG7,NS,carcinoma,0,1 CACNG7 NM_031896 exon3 c.T334C p.F112L CTCGTGTTCACGG . 90.0 4.0 185.0 0.0 . 58 . . Atlas-SNP ZNF471 57573 hgsc.bcm.edu hg19 19 57027722 57027722 + Missense_Mutation SNP T T G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ZNF471 NM_020813 exon3 c.T112G p.L38V AAGCGTTTATACA . 163.0 16.0 255.0 0.0 . 99 . . Atlas-SNP EBF4 57593 hgsc.bcm.edu hg19 20 2736381 2736381 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . . NM_001110514 exon16 c.T1637C p.V546A CCGCCGTCAAACA . 80.0 4.0 129.0 0.0 . . . . Atlas-SNP TPX2 22974 hgsc.bcm.edu hg19 20 30365314 30365314 + Missense_Mutation SNP G G T novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TPX2 NM_012112 exon9 c.G755T p.S252I CAGTGAGCCAGGT . 81.0 8.0 145.0 0.0 . 61 . . Atlas-SNP PHACTR3 116154 hgsc.bcm.edu hg19 20 58342290 58342290 + Silent SNP C C A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PHACTR3 NM_080672 exon5 c.C591A p.L197L CAGCCTCCTGCCC . 103.0 7.0 145.0 0.0 . 104 . . Atlas-SNP OPRL1 4987 hgsc.bcm.edu hg19 20 62730031 62730031 + Missense_Mutation SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 OPRL1,NS,carcinoma,0,1 OPRL1 NM_000913 exon4 c.G992A p.R331H GCTTCCGCAAGTT . 64.0 3.0 110.0 0.0 . 47 . . Atlas-SNP PIWIL3 440822 hgsc.bcm.edu hg19 22 25153964 25153964 + Missense_Mutation SNP G G A novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PIWIL3 NM_001008496 exon4 c.C266T p.P89L TGCAAGGGCGCTG . 95.0 20.0 177.0 0.0 . 115 . . Atlas-SNP SLC5A4 6527 hgsc.bcm.edu hg19 22 32643496 32643496 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SLC5A4 NM_014227 exon5 c.A379G p.T127A GCATGGTCATCAC . 86.0 4.0 149.0 0.0 . 82 . . Atlas-SNP PRKX 5613 hgsc.bcm.edu hg19 X 3573330 3573330 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PRKX NM_005044 exon3 c.T459C p.S153S CTCTGCAGAGTAG . 82.0 4.0 119.0 0.0 . 29 . . Atlas-SNP CNKSR2 22866 hgsc.bcm.edu hg19 X 21458842 21458842 + Silent SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CNKSR2 NM_001168647 exon4 c.A462G p.S154S CTATTCAGTTACA . 55.0 4.0 60.0 0.0 . 158 . . Atlas-SNP CXorf22 170063 hgsc.bcm.edu hg19 X 35966467 35966467 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CXorf22 NM_152632 exon4 c.T554C p.I185T TACCCATCCTCAT . 52.0 5.0 78.0 0.0 . 272 . . Atlas-SNP SUV39H1 6839 hgsc.bcm.edu hg19 X 48558562 48558562 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . SUV39H1 NM_003173 exon3 c.T246C p.C82C CAAGTGTGTGCGT . 71.0 5.0 83.0 0.0 . 36 . . Atlas-SNP TSPYL2 64061 hgsc.bcm.edu hg19 X 53114958 53114958 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . TSPYL2 NM_022117 exon6 c.T1384C p.F462L GACTACTTCGAGA . 82.0 4.0 94.0 0.0 . 53 . . Atlas-SNP ATRX 546 hgsc.bcm.edu hg19 X 76972657 76972657 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . ATRX NM_138270 exon2 c.A84G p.E28E TTCAGATTCTTCT . 55.0 7.0 84.0 0.0 . 833 . . Atlas-SNP PCDH19 57526 hgsc.bcm.edu hg19 X 99657571 99657571 + Missense_Mutation SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . PCDH19 NM_001184880 exon3 c.A2567G p.Q856R GGCCCCTGGCTGT . 69.0 4.0 139.0 0.0 . 269 . . Atlas-SNP CXorf57 55086 hgsc.bcm.edu hg19 X 105876229 105876229 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . CXorf57 NM_018015 exon5 c.A1156G p.R386G GTAGGAAGGGTCC . 186.0 8.0 238.0 0.0 . 107 . . Atlas-SNP LUZP4 51213 hgsc.bcm.edu hg19 X 114540807 114540807 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . LUZP4 NM_016383 exon4 c.A380G p.K127R CAGAGAAGAATCA . 112.0 5.0 157.0 0.0 . 51 . . Atlas-SNP NKRF 55922 hgsc.bcm.edu hg19 X 118724383 118724383 + Silent SNP T T C novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . NKRF NM_001173487 exon4 c.A1050G p.K350K CCAGTGTTTGGCA . 86.0 4.0 123.0 0.0 . 121 . . Atlas-SNP STAG2 10735 hgsc.bcm.edu hg19 X 123200272 123200272 + Missense_Mutation SNP A A G novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . STAG2 NM_001042749 exon23 c.A2251G p.S751G ACTGAAAGCAGCT . 93.0 5.0 182.0 0.0 . 309 . . Atlas-SNP DENND5B 160518 hgsc.bcm.edu hg19 12 31604973 31604973 + Frame_Shift_Del DEL A A - novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . DENND5B NM_144973 exon5 c.1531delA p.T511fs . . 126.0 12.0 212.0 0.0 . 114 . . Atlas-INDEL IL6ST 3572 hgsc.bcm.edu hg19 5 55260061 55260075 + In_Frame_Del DEL AATACACAGTAGAAT AATACACAGTAGAAT - novel TCGA-DD-A1ED-01A-11D-A152-10 TCGA-DD-A1ED-10A-01D-A152-10 AATACACAGTAGAAT AATACACAGTAGAAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4c3eda94-56f4-46d3-8c88-50d476e773f6 09455f77-1bc1-4f4b-9b75-dd79fd3237c3 . IL6ST NM_002184 exon6 c.558_572del p.186_191del . . 194.0 13.0 315.0 0.0 . 75 . . Pindel