Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm USP48 84196 hgsc.bcm.edu hg19 1 22016544 22016544 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . USP48 NM_032236 exon24 c.G2932A p.D978N TTCCATCAATTGA . 301.0 107.0 96.0 0.0 . 91 . . Atlas-SNP PARS2 25973 hgsc.bcm.edu hg19 1 55223846 55223846 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PARS2 NM_152268 exon2 c.G989A p.G330D GGTTTGCCACAGA . 165.0 66.0 54.0 0.0 . 29 . . Atlas-SNP PDE4DIP 9659 hgsc.bcm.edu hg19 1 144852472 144852472 + Missense_Mutation SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PDE4DIP NM_014644 exon44 c.A7027G p.T2343A CTGGAGTACATGG . 180.0 36.0 63.0 0.0 . 817 . . Atlas-SNP ITGA10 8515 hgsc.bcm.edu hg19 1 145528004 145528004 + Missense_Mutation SNP G G C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ITGA10 NM_003637 exon3 c.G241C p.A81P GGGGGGGCCCACA . 253.0 156.0 50.0 0.0 . 131 . . Atlas-SNP CHD1L 9557 hgsc.bcm.edu hg19 1 146714372 146714372 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CHD1L NM_004284 exon1 c.A19G p.T7A GGCGCTACTAGCC . 38.0 14.0 9.0 0.0 . 72 . . Atlas-SNP KIAA0907 22889 hgsc.bcm.edu hg19 1 155899509 155899509 + Missense_Mutation SNP T T G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KIAA0907 NM_014949 exon3 c.A378C p.Q126H CTCGTCTTGAGTC . 219.0 68.0 59.0 0.0 . 58 . . Atlas-SNP SSR2 6746 hgsc.bcm.edu hg19 1 155988138 155988138 + Silent SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SSR2 NM_003145 exon3 c.A177G p.L59L ATCAGATAGTTCC . 94.0 33.0 30.0 0.0 . 20 . . Atlas-SNP NES 10763 hgsc.bcm.edu hg19 1 156640645 156640645 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . NES NM_006617 exon4 c.G3335T p.G1112V AGATGGCCTGGGT . 141.0 43.0 37.0 0.0 . 196 . . Atlas-SNP DDR2 4921 hgsc.bcm.edu hg19 1 162731029 162731029 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . DDR2 NM_001014796 exon10 c.G884T p.G295V CTAAAGGTGTGAA . 307.0 71.0 83.0 0.0 . 228 . . Atlas-SNP PBX1 5087 hgsc.bcm.edu hg19 1 164768965 164768965 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PBX1 NM_001204963 exon4 c.G540T p.M180I CGTGATGAATCTC . 211.0 68.0 56.0 0.0 . 60 . . Atlas-SNP MAEL 84944 hgsc.bcm.edu hg19 1 166974345 166974345 + Silent SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MAEL NM_032858 exon7 c.G681A p.L227L GTGTTTGAAGCAT . 398.0 104.0 113.0 0.0 . 95 . . Atlas-SNP SUCO 51430 hgsc.bcm.edu hg19 1 172557990 172557990 + Missense_Mutation SNP G G C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . . NM_014283 exon18 c.G1749C p.E583D TCAAGAGGAGGAA . 262.0 75.0 69.0 0.0 . . . . Atlas-SNP TEX35 84066 hgsc.bcm.edu hg19 1 178489807 178489807 + Splice_Site SNP G G C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TEX35 NM_001170724 exon7 c.342-1G>C . CCCCCAGTCCCCT . 105.0 22.0 38.0 0.0 . 15 . . Atlas-SNP RGSL1 353299 hgsc.bcm.edu hg19 1 182443063 182443063 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . RGSL1 NM_001137669 exon6 c.G817T p.D273Y AAGCCAGATGCTA . 200.0 67.0 66.0 0.0 . 111 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 185950141 185950141 + Missense_Mutation SNP T T G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . HMCN1 NM_031935 exon17 c.T2598G p.I866M CTATATTTGTGAA . 204.0 51.0 64.0 0.0 . 797 . . Atlas-SNP PIK3C2B 5287 hgsc.bcm.edu hg19 1 204408086 204408086 + Missense_Mutation SNP G G C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PIK3C2B NM_002646 exon24 c.C3493G p.P1165A CCCCAGGGTTGTG . 111.0 22.0 43.0 0.0 . 142 . . Atlas-SNP DSTYK 25778 hgsc.bcm.edu hg19 1 205180511 205180511 + Silent SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . DSTYK NM_199462 exon1 c.C153T p.F51F GCGGAAGAACTTC . 30.0 12.0 8.0 0.0 . 87 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237580423 237580423 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . RYR2 NM_001035 exon11 c.C848T p.A283V GAGTTGCGTAAGT . 177.0 68.0 57.0 0.0 . 1273 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237972285 237972285 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . RYR2 NM_001035 exon100 c.A14383G p.K4795E TACAATAAAAGTG . 308.0 133.0 101.0 0.0 . 1273 . . Atlas-SNP PREB 10113 hgsc.bcm.edu hg19 2 27355507 27355507 + Missense_Mutation SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PREB NM_013388 exon5 c.C716T p.T239I GAAAAGGTGGGTC . 191.0 61.0 62.0 0.0 . 37 . . Atlas-SNP RBKS 64080 hgsc.bcm.edu hg19 2 28065967 28065967 + Silent SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . RBKS NM_022128 exon5 c.T481C p.L161L CTTCCAAAGAAGT . 151.0 44.0 56.0 0.0 . 23 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179475909 179475909 + Missense_Mutation SNP C C G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TTN NM_001267550 exon270 c.G50947C p.V16983L TTGGAACTGGGAC . 151.0 77.0 64.0 0.0 . 18412 . . Atlas-SNP EOMES 8320 hgsc.bcm.edu hg19 3 27758974 27758974 + Missense_Mutation SNP T T A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . EOMES NM_005442 exon6 c.A1648T p.I550F ATTTAATGCCATA . 187.0 67.0 66.0 0.0 . 65 . . Atlas-SNP APPL1 26060 hgsc.bcm.edu hg19 3 57283493 57283493 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . APPL1 NM_012096 exon11 c.G969T p.M323I GGCCATGGACATA . 162.0 66.0 77.0 0.0 . 59 . . Atlas-SNP OSBPL11 114885 hgsc.bcm.edu hg19 3 125295107 125295107 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . OSBPL11 NM_022776 exon5 c.G592T p.V198F GTCCAACATTAAA . 196.0 74.0 84.0 0.0 . 64 . . Atlas-SNP PLOD2 5352 hgsc.bcm.edu hg19 3 145828234 145828234 + Missense_Mutation SNP A A G rs376517611 alternate_allele TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PLOD2 NM_182943 exon4 c.T340C p.F114L CATCAAAGCTGTT . 109.0 47.0 61.0 0.0 . 81 . . Atlas-SNP MLF1 4291 hgsc.bcm.edu hg19 3 158322940 158322940 + Missense_Mutation SNP G G C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MLF1 NM_001195432 exon9 c.G849C p.L283F TGTTTTGGGGGAC . 267.0 119.0 102.0 0.0 . 62 . . Atlas-SNP IL12A 3592 hgsc.bcm.edu hg19 3 159708075 159708075 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . IL12A NM_000882 exon2 c.G240T p.R80S GCTGAGGGCCGTC . 142.0 40.0 45.0 0.0 . 23 . . Atlas-SNP MCCC1 56922 hgsc.bcm.edu hg19 3 182756877 182756877 + Silent SNP G G C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MCCC1 NM_020166 exon12 c.C1314G p.V438V CCACACGACCAGC . 194.0 89.0 70.0 0.0 . 87 . . Atlas-SNP CLDN1 9076 hgsc.bcm.edu hg19 3 190030689 190030689 + Silent SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CLDN1 NM_021101 exon2 c.C360A p.V120V CCCAATGACAGCC . 155.0 53.0 67.0 0.0 . 23 . . Atlas-SNP LRCH3 84859 hgsc.bcm.edu hg19 3 197592314 197592314 + Silent SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . LRCH3 NM_032773 exon16 c.T1737C p.A579A TAATGCTCTATTA . 253.0 93.0 107.0 0.0 . 96 . . Atlas-SNP KCTD8 386617 hgsc.bcm.edu hg19 4 44176879 44176879 + Silent SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KCTD8 NM_198353 exon2 c.C1350T p.I450I AATGTGGATTTTT . 210.0 98.0 93.0 0.0 . 96 . . Atlas-SNP GABRA4 2557 hgsc.bcm.edu hg19 4 46967062 46967062 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . GABRA4 NM_000809 exon8 c.G1059T p.R353S TGTCTTCCTTTTG . 620.0 230.0 165.0 0.0 . 129 . . Atlas-SNP CORIN 10699 hgsc.bcm.edu hg19 4 47746441 47746441 + Silent SNP A A C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CORIN NM_006587 exon5 c.T777G p.P259P CTGCTGAGGTGAG . 127.0 41.0 61.0 0.0 . 154 . . Atlas-SNP SMR3A 26952 hgsc.bcm.edu hg19 4 71232505 71232505 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SMR3A NM_012390 exon3 c.C199A p.L67I CCACCCCTTTCTC . 307.0 119.0 105.0 0.0 . 35 . . Atlas-SNP C4orf26 152816 hgsc.bcm.edu hg19 4 76489342 76489342 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 C4orf26_ENST00000435974,rectum,carcinoma,-1,2 C4orf26 NM_001206981 exon3 c.C130T p.R44C TATTTACGCCTCC . 71.0 36.0 46.0 0.0 . 24 . . Atlas-SNP CENPE 1062 hgsc.bcm.edu hg19 4 104060948 104060948 + Missense_Mutation SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CENPE NM_001813 exon38 c.A6202G p.R2068G TCACTCTAGCTAT . 227.0 153.0 114.0 0.0 . 253 . . Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114278315 114278315 + Silent SNP A A T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ANK2 NM_001148 exon38 c.A8541T p.S2847S ATCTTCATCCTCT . 212.0 76.0 67.0 0.0 . 576 . . Atlas-SNP NAA15 80155 hgsc.bcm.edu hg19 4 140272693 140272693 + Silent SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . NAA15 NM_057175 exon9 c.A942G p.L314L GTTCCTAAGGATG . 216.0 96.0 86.0 0.0 . 88 . . Atlas-SNP ING2 3622 hgsc.bcm.edu hg19 4 184431731 184431731 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 ING2,NS,carcinoma,0,1 ING2 NM_001564 exon2 c.A469G p.T157A CAGCGGACCAGTG . 211.0 79.0 75.0 0.0 . 20 . . Atlas-SNP SORBS2 8470 hgsc.bcm.edu hg19 4 186533094 186533094 + Nonsense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SORBS2 NM_001270771 exon21 c.G3224A p.W1075X TCATACCAGTTTT . 351.0 22.0 113.0 0.0 . 300 . . Atlas-SNP CDH18 1016 hgsc.bcm.edu hg19 5 19612615 19612615 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CDH18 NM_001167667 exon6 c.G739T p.G247W AAAGCCCTCCAAC . 375.0 203.0 91.0 0.0 . 561 . . Atlas-SNP CDH9 1007 hgsc.bcm.edu hg19 5 26906920 26906920 + Missense_Mutation SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CDH9 NM_016279 exon4 c.C551T p.T184I GCATCTGTTGCAG . 228.0 121.0 67.0 0.0 . 305 . . Atlas-SNP PLCXD3 345557 hgsc.bcm.edu hg19 5 41381972 41381972 + Silent SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PLCXD3 NM_001005473 exon2 c.G768A p.V256V TTTGACCACAGTG . 290.0 162.0 72.0 0.0 . 86 . . Atlas-SNP ERCC8 1161 hgsc.bcm.edu hg19 5 60200656 60200656 + Silent SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ERCC8 NM_000082 exon5 c.T444C p.H148H AGACATATGATGA . 322.0 130.0 108.0 0.0 . 31 . . Atlas-SNP MEF2C 4208 hgsc.bcm.edu hg19 5 88025144 88025144 + Silent SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MEF2C NM_001193347 exon10 c.C885A p.S295S CGACTGGGAGTTA . 119.0 43.0 54.0 0.0 . 184 . . Atlas-SNP ZNF474 133923 hgsc.bcm.edu hg19 5 121487810 121487810 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 ZNF474,rectum,carcinoma,0,1 ZNF474 NM_207317 exon2 c.C125T p.S42F GCCTTTCCCCAGA . 242.0 111.0 90.0 0.0 . 43 . . Atlas-SNP SLC27A6 28965 hgsc.bcm.edu hg19 5 128368891 128368891 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SLC27A6 NM_001017372 exon10 c.C1776A p.Y592X ACTTTACTTCATG . 422.0 160.0 123.0 0.0 . 112 . . Atlas-SNP SIL1 64374 hgsc.bcm.edu hg19 5 138287486 138287486 + Silent SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SIL1 NM_001037633 exon9 c.A855G p.A285A CTTCTTTGCAGTG . 64.0 22.0 17.0 0.0 . 31 . . Atlas-SNP PCDHB11 56125 hgsc.bcm.edu hg19 5 140580796 140580796 + Silent SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PCDHB11 NM_018931 exon1 c.C1449T p.N483N CACCAACGCCCAG . 171.0 65.0 64.0 0.0 . 162 . . Atlas-SNP CDHR2 54825 hgsc.bcm.edu hg19 5 176003023 176003023 + Missense_Mutation SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CDHR2 NM_017675 exon12 c.T1031C p.M344T GAGTGATGGACGT . 110.0 34.0 42.0 0.0 . 152 . . Atlas-SNP DBN1 1627 hgsc.bcm.edu hg19 5 176887553 176887553 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . DBN1 NM_080881 exon11 c.G841A p.A281T CTGCTGCCTCCTG . 144.0 69.0 53.0 0.0 . 122 . . Atlas-SNP ZFP2 80108 hgsc.bcm.edu hg19 5 178358877 178358877 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ZFP2 NM_030613 exon5 c.G563T p.C188F ATCAGTGTAAAGA . 52.0 19.0 29.0 0.0 . 70 . . Atlas-SNP NCR2 9436 hgsc.bcm.edu hg19 6 41309741 41309741 + Silent SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . NCR2 NM_001199509 exon4 c.G534T p.P178P CAGCCCGTCCTCT . 63.0 27.0 29.0 0.0 . 44 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43153266 43153266 + Missense_Mutation SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CUL9 NM_015089 exon3 c.G668A p.R223H ACAGTCGCTATAC . 121.0 52.0 37.0 0.0 . 248 . . Atlas-SNP CRIP3 401262 hgsc.bcm.edu hg19 6 43273593 43273593 + Missense_Mutation SNP C C G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CRIP3 NM_206922 exon8 c.G574C p.G192R AGCAGCCCACATC . 178.0 56.0 74.0 0.0 . 30 . . Atlas-SNP PHIP 55023 hgsc.bcm.edu hg19 6 79688429 79688429 + Splice_Site SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PHIP NM_017934 exon25 c.2770-1G>T . CAATCTCTGACAA . 151.0 61.0 61.0 0.0 . 177 . . Atlas-SNP GABRR2 2570 hgsc.bcm.edu hg19 6 90009577 90009577 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . GABRR2 NM_002043 exon2 c.T121C p.Y41H TCTTATATAAGTG . 190.0 79.0 74.0 0.0 . 41 . . Atlas-SNP BEND3 57673 hgsc.bcm.edu hg19 6 107391941 107391941 + Missense_Mutation SNP C C T rs142662918 bycluster;byfrequency;alternate_allele TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 BEND3,NS,carcinoma,0,1 BEND3 NM_001080450 exon5 c.G454A p.V152M CGTACACGTTTAG . 144.0 59.0 54.0 0.0 . 70 . C|1.000;G|0.000 Atlas-SNP PDSS2 57107 hgsc.bcm.edu hg19 6 107475922 107475922 + Nonsense_Mutation SNP G G C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PDSS2 NM_020381 exon8 c.C1101G p.Y367X TCCATGGTAACGA . 122.0 53.0 51.0 0.0 . 37 . . Atlas-SNP COL10A1 1300 hgsc.bcm.edu hg19 6 116441243 116441243 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . COL10A1 NM_000493 exon3 c.C2036A p.P679Q CACATTGGAGCCA . 97.0 43.0 38.0 0.0 . 51 . . Atlas-SNP COL10A1 1300 hgsc.bcm.edu hg19 6 116441244 116441244 + Missense_Mutation SNP G G T rs138831203 TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . COL10A1 NM_000493 exon3 c.C2035A p.P679T ACATTGGAGCCAC . 96.0 42.0 38.0 0.0 . 51 . G|1.000;T|0.000 Atlas-SNP ZUFSP 221302 hgsc.bcm.edu hg19 6 116987856 116987856 + Missense_Mutation SNP T T A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ZUFSP NM_145062 exon2 c.A500T p.E167V ATATCTTCACTGT . 284.0 25.0 95.0 0.0 . 46 . . Atlas-SNP ZUFSP 221302 hgsc.bcm.edu hg19 6 116987857 116987857 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ZUFSP NM_145062 exon2 c.G499T p.E167X TATCTTCACTGTG . 286.0 26.0 95.0 0.0 . 46 . . Atlas-SNP BCLAF1 9774 hgsc.bcm.edu hg19 6 136589325 136589325 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 BCLAF1_ENST00000531224,right_upper_lobe,carcinoma,0,1 BCLAF1 NM_014739 exon10 c.G2372T p.G791V CTAACTCCTGCAA . 333.0 37.0 106.0 0.0 . 203 . . Atlas-SNP RPS6KA2 6196 hgsc.bcm.edu hg19 6 166944752 166944752 + Missense_Mutation SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . RPS6KA2 NM_001006932 exon4 c.C290T p.A97V TTCATGGCGTAGA . 108.0 34.0 47.0 0.0 . 212 . . Atlas-SNP THSD7A 221981 hgsc.bcm.edu hg19 7 11464348 11464348 + Missense_Mutation SNP C C G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . THSD7A NM_015204 exon15 c.G3358C p.E1120Q CGCCCTCTCCACA . 153.0 14.0 57.0 0.0 . 219 . . Atlas-SNP CCDC129 223075 hgsc.bcm.edu hg19 7 31691634 31691634 + Silent SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CCDC129 NM_001257968 exon13 c.G2871T p.R957R AGACCGGGCTCAG . 444.0 210.0 113.0 0.0 . 127 . . Atlas-SNP UPP1 7378 hgsc.bcm.edu hg19 7 48147819 48147819 + Silent SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . UPP1 NM_003364 exon9 c.C798T p.A266A AGCGGCCGTGGTG . 58.0 27.0 20.0 0.0 . 35 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48559835 48559835 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ABCA13 NM_152701 exon53 c.A13996G p.T4666A CAGGGCACAGTAC . 275.0 92.0 98.0 0.0 . 1192 . . Atlas-SNP ELN 2006 hgsc.bcm.edu hg19 7 73474235 73474235 + Silent SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ELN NM_001081754 exon23 c.C1449T p.G483G TGTCGGCGTGGCT . 507.0 29.0 108.0 0.0 . 81 . . Atlas-SNP TFEC 22797 hgsc.bcm.edu hg19 7 115624439 115624439 + Silent SNP C C A rs34738022 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TFEC NM_001018058 exon2 c.G57T p.V19V ACTTGGCACTGCA . 393.0 158.0 127.0 0.0 . 51 . C|0.983;T|0.017 Atlas-SNP CTTNBP2 83992 hgsc.bcm.edu hg19 7 117375351 117375351 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CTTNBP2 NM_033427 exon15 c.C3660A p.S1220R TTCAGTGCTGCGA . 151.0 67.0 72.0 0.0 . 200 . . Atlas-SNP KLHDC10 23008 hgsc.bcm.edu hg19 7 129760678 129760678 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KLHDC10 NM_014997 exon4 c.G565T p.V189L TGTAATGTGAAGT . 325.0 76.0 74.0 0.0 . 36 . . Atlas-SNP KLHDC10 23008 hgsc.bcm.edu hg19 7 129760679 129760679 + Missense_Mutation SNP T T A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KLHDC10 NM_014997 exon4 c.T566A p.V189E GTAATGTGAAGTA . 323.0 72.0 75.0 0.0 . 36 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 131883315 131883315 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PLXNA4 NM_020911 exon13 c.C2667A p.D889E GGCGATGTCGCGA . 41.0 10.0 23.0 0.0 . 873 . . Atlas-SNP FAM180A 389558 hgsc.bcm.edu hg19 7 135418945 135418945 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . FAM180A NM_205855 exon3 c.C300A p.S100R TGGGATGCTCTTG . 92.0 41.0 41.0 0.0 . 32 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 2976080 2976080 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 CSMD1_ENST00000537824,right_upper_lobe,carcinoma,0,2 CSMD1 NM_033225 exon42 c.C6271A p.P2091T ATGGGGGTGGATC . 140.0 55.0 57.0 0.0 . 1469 . . Atlas-SNP SGCZ 137868 hgsc.bcm.edu hg19 8 13965672 13965672 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 SGCZ,NS,malignant_melanoma,0,1 SGCZ NM_139167 exon6 c.G620A p.R207K CCTTACCTGAGAT . 178.0 64.0 76.0 0.0 . 96 . . Atlas-SNP MMP16 4325 hgsc.bcm.edu hg19 8 89339405 89339405 + Missense_Mutation SNP G G C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MMP16 NM_005941 exon1 c.C31G p.R11G CCAACCGTCTTCC . 113.0 32.0 65.0 0.0 . 176 . . Atlas-SNP MTBP 27085 hgsc.bcm.edu hg19 8 121530146 121530146 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MTBP NM_022045 exon19 c.A2302G p.N768D AATAGTAATCACT . 108.0 46.0 34.0 0.0 . 77 . . Atlas-SNP KDM4C 23081 hgsc.bcm.edu hg19 9 6981046 6981046 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KDM4C NM_001146696 exon9 c.C1109T p.P370L CGAAGCCTACTCC . 92.0 45.0 38.0 0.0 . 186 . . Atlas-SNP PLAA 9373 hgsc.bcm.edu hg19 9 26923264 26923264 + Silent SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PLAA NM_001031689 exon7 c.G951T p.L317L GTGAGACAGTTCT . 343.0 122.0 111.0 0.0 . 48 . . Atlas-SNP UNC13B 10497 hgsc.bcm.edu hg19 9 35382500 35382500 + Missense_Mutation SNP T T G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . UNC13B NM_006377 exon20 c.T2555G p.F852C CCAACTTTGGGGT . 233.0 26.0 73.0 0.0 . 153 . . Atlas-SNP APBA1 320 hgsc.bcm.edu hg19 9 72064664 72064664 + Nonsense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . APBA1 NM_001163 exon10 c.G2017T p.E673X CAGACTCCACAAT . 98.0 38.0 48.0 0.0 . 96 . . Atlas-SNP SMC5 23137 hgsc.bcm.edu hg19 9 72879327 72879327 + Missense_Mutation SNP C C G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SMC5 NM_015110 exon2 c.C293G p.A98G GTTTAGCTGGAAA . 331.0 155.0 92.0 0.0 . 96 . . Atlas-SNP KIF27 55582 hgsc.bcm.edu hg19 9 86457172 86457172 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KIF27 NM_017576 exon17 c.G3701A p.R1234Q AGTTGCCGCCGAA . 603.0 245.0 138.0 0.0 . 103 . . Atlas-SNP RALGDS 5900 hgsc.bcm.edu hg19 9 135984101 135984101 + Missense_Mutation SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . RALGDS NM_006266 exon5 c.C737T p.A246V AGCTGGGCCAGGA . 50.0 32.0 33.0 0.0 . 75 . . Atlas-SNP CTNNA3 29119 hgsc.bcm.edu hg19 10 67829142 67829142 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CTNNA3 NM_013266 exon15 c.G2083T p.D695Y TATCATCCCATAT . 354.0 140.0 121.0 0.0 . 401 . . Atlas-SNP ITPRIP 85450 hgsc.bcm.edu hg19 10 106075119 106075119 + Missense_Mutation SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ITPRIP NM_001272013 exon2 c.C691T p.R231C CTGAGCGGCCGGA . 77.0 43.0 38.0 0.0 . 44 . . Atlas-SNP ITPRIP 85450 hgsc.bcm.edu hg19 10 106075611 106075611 + Missense_Mutation SNP C C G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ITPRIP NM_001272013 exon2 c.G199C p.E67Q GTGCCTCCTTTTC . 80.0 25.0 30.0 0.0 . 44 . . Atlas-SNP TECTB 6975 hgsc.bcm.edu hg19 10 114046139 114046139 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TECTB NM_058222 exon4 c.A473G p.N158S CTCTCAACTTCTA . 142.0 55.0 66.0 0.0 . 35 . . Atlas-SNP TACC2 10579 hgsc.bcm.edu hg19 10 123846536 123846536 + Silent SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TACC2 NM_206862 exon4 c.G4521T p.R1507R GGAGCGGAACTTG . 53.0 17.0 27.0 0.0 . 271 . . Atlas-SNP SPTY2D1 144108 hgsc.bcm.edu hg19 11 18638422 18638422 + Missense_Mutation SNP C C G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SPTY2D1 NM_194285 exon2 c.G175C p.A59P ACATACCTTTTCG . 255.0 107.0 103.0 0.0 . 72 . . Atlas-SNP PPP1R32 220004 hgsc.bcm.edu hg19 11 61249803 61249803 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . . NM_001170753 exon3 c.C130T p.R44C AAGCCCCGTGTGG . 71.0 22.0 31.0 0.0 . . . . Atlas-SNP GANAB 23193 hgsc.bcm.edu hg19 11 62407128 62407128 + Silent SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . GANAB NM_198334 exon2 c.T114C p.F38F GGTCTTAAAGTTG . 194.0 86.0 90.0 0.0 . 110 . . Atlas-SNP KAT5 10524 hgsc.bcm.edu hg19 11 65479799 65479799 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KAT5 NM_182710 exon1 c.A61G p.R21G GTGGGTAGAGCCC . 104.0 37.0 56.0 0.0 . 36 . . Atlas-SNP KDM2A 22992 hgsc.bcm.edu hg19 11 66975117 66975117 + Missense_Mutation SNP T T A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KDM2A NM_012308 exon6 c.T444A p.F148L CGAGTTTAGCCAC . 125.0 50.0 42.0 0.0 . 80 . . Atlas-SNP KDM2A 22992 hgsc.bcm.edu hg19 11 66986855 66986855 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KDM2A NM_012308 exon10 c.A938G p.N313S TATACAACATTGA . 153.0 65.0 58.0 0.0 . 80 . . Atlas-SNP KRTAP5-8 57830 hgsc.bcm.edu hg19 11 71249121 71249121 + Missense_Mutation SNP C C G rs200585722 bycluster TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KRTAP5-8 NM_021046 exon1 c.C20G p.S7C GCTGCTCTGGAGG . 324.0 17.0 72.0 0.0 . 28 . . Atlas-SNP MAML2 84441 hgsc.bcm.edu hg19 11 95825206 95825206 + Silent SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MAML2 NM_032427 exon2 c.G1989A p.Q663Q TTGTTGCTGCTGC . 240.0 25.0 57.0 0.0 . 94 . . Atlas-SNP PDGFD 80310 hgsc.bcm.edu hg19 11 103870889 103870889 + Silent SNP G G A rs200239592 by1000genomes;alternate_allele TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PDGFD NM_025208 exon2 c.C219T p.Y73Y CCTGGGGTAGCTG . 423.0 163.0 113.0 0.0 . 125 . G|1.000;C|0.000 Atlas-SNP SPATA19 219938 hgsc.bcm.edu hg19 11 133714431 133714431 + Silent SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SPATA19 NM_174927 exon3 c.C240A p.G80G GTCCTGGCCATGG . 219.0 91.0 78.0 0.0 . 36 . . Atlas-SNP GRIN2B 2904 hgsc.bcm.edu hg19 12 13720174 13720174 + Missense_Mutation SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . GRIN2B NM_000834 exon12 c.C2383T p.L795F GCCAGAGAGCTTC . 172.0 69.0 61.0 0.0 . 303 . . Atlas-SNP BCAT1 586 hgsc.bcm.edu hg19 12 24989464 24989464 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . BCAT1 NM_001178093 exon8 c.T920C p.L307P AGGTCCAGAATGC . 171.0 67.0 80.0 0.0 . 44 . . Atlas-SNP FAM186A 121006 hgsc.bcm.edu hg19 12 50724480 50724480 + Missense_Mutation SNP T T A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . FAM186A NM_001145475 exon7 c.A6910T p.I2304L CTGCTATTGGGTA . 285.0 110.0 92.0 0.0 . 181 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70970186 70970186 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PTPRB NM_001109754 exon11 c.C2818A p.H940N AGGAGTGATTTTC . 234.0 81.0 88.0 0.0 . 676 . . Atlas-SNP OTOGL 283310 hgsc.bcm.edu hg19 12 80761993 80761993 + Silent SNP A A G rs370122451 TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . OTOGL NM_173591 exon54 c.A6492G p.V2164V CCAGGTATATACT . 207.0 74.0 90.0 0.0 . 235 . . Atlas-SNP MGAT4C 25834 hgsc.bcm.edu hg19 12 86374008 86374008 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MGAT4C NM_013244 exon7 c.G496T p.A166S TTCCTGCAATAAT . 109.0 48.0 44.0 0.0 . 110 . . Atlas-SNP CEP290 80184 hgsc.bcm.edu hg19 12 88486497 88486497 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CEP290 NM_025114 exon29 c.T3422C p.L1141S TTCTCTAATTCTA . 366.0 150.0 119.0 0.0 . 195 . . Atlas-SNP PLXNC1 10154 hgsc.bcm.edu hg19 12 94542869 94542869 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PLXNC1 NM_005761 exon1 c.G122T p.R41L TGTGGCGGTCGGA . 18.0 10.0 0.0 0.0 . 135 . . Atlas-SNP SIRT4 23409 hgsc.bcm.edu hg19 12 120741415 120741415 + Silent SNP C C T rs199859894 TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SIRT4 NM_012240 exon2 c.C51T p.I17I TTGGATCGCAAAC . 86.0 25.0 40.0 0.0 . 29 . . Atlas-SNP HNF1A 6927 hgsc.bcm.edu hg19 12 121432014 121432014 + Missense_Mutation SNP T T A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . HNF1A NM_000545 exon4 c.T761A p.L254Q AGGGGCTGGGCTC . 71.0 21.0 34.0 0.0 . 302 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35672500 35672500 + Silent SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . NBEA NM_015678 exon11 c.G1638T p.L546L GATGCTGGGTGGA . 178.0 64.0 70.0 0.0 . 340 . . Atlas-SNP CSNK1A1L 122011 hgsc.bcm.edu hg19 13 37678916 37678916 + Missense_Mutation SNP A A T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CSNK1A1L NM_145203 exon1 c.T478A p.L160M TGGCCAAACCAAA . 743.0 336.0 152.0 0.0 . 69 . . Atlas-SNP SUGT1 10910 hgsc.bcm.edu hg19 13 53254291 53254291 + Splice_Site SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SUGT1 NM_001130912 exon13 c.996+1G>T . TCCTTTGTAAGAA . 142.0 44.0 76.0 0.0 . 37 . . Atlas-SNP TBC1D4 9882 hgsc.bcm.edu hg19 13 76055603 76055603 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TBC1D4 NM_014832 exon1 c.G301A p.A101T CCGAGGCCCCAGC . 80.0 39.0 26.0 0.0 . 142 . . Atlas-SNP MYO16 23026 hgsc.bcm.edu hg19 13 109540788 109540788 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MYO16 NM_001198950 exon14 c.G1622T p.G541V GGGCTGGCGCCAG . 202.0 81.0 69.0 0.0 . 285 . . Atlas-SNP OR4K2 390431 hgsc.bcm.edu hg19 14 20344661 20344661 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . OR4K2 NM_001005501 exon1 c.C235A p.P79T GCCACCCCAAAGA . 413.0 119.0 124.0 0.0 . 97 . . Atlas-SNP OR4K1 79544 hgsc.bcm.edu hg19 14 20404418 20404418 + Missense_Mutation SNP T T G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . OR4K1 NM_001004063 exon1 c.T593G p.M198R AAATTATGACCCT . 284.0 74.0 132.0 0.0 . 108 . . Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23897841 23897841 + Silent SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 MYH7,caecum,carcinoma,0,1 MYH7 NM_000257 exon15 c.C1446T p.N482N CTTCTCGTTGGTG . 381.0 19.0 96.0 0.0 . 349 . . Atlas-SNP RTN1 6252 hgsc.bcm.edu hg19 14 60074128 60074128 + Silent SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . RTN1 NM_021136 exon4 c.C1848A p.T616T GAACTGGGTCAGG . 78.0 33.0 18.0 0.0 . 139 . . Atlas-SNP RTN1 6252 hgsc.bcm.edu hg19 14 60097163 60097163 + Splice_Site SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . RTN1 NM_206852 exon2 c.61+1G>T . AGAATACCCTGAC . 78.0 23.0 31.0 0.0 . 139 . . Atlas-SNP POMT2 29954 hgsc.bcm.edu hg19 14 77751296 77751296 + Nonsense_Mutation SNP T T A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . POMT2 NM_013382 exon14 c.A1573T p.K525X CACACTTGGGATT . 126.0 50.0 52.0 0.0 . 47 . . Atlas-SNP MEIS2 4212 hgsc.bcm.edu hg19 15 37329148 37329148 + Missense_Mutation SNP T T A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MEIS2 NM_170676 exon8 c.A767T p.D256V CTGTTGTCTAAAC . 236.0 114.0 83.0 0.0 . 99 . . Atlas-SNP MGA 23269 hgsc.bcm.edu hg19 15 42059127 42059127 + Silent SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MGA NM_001164273 exon24 c.G8847A p.K2949K AGGGAAGAATACT . 80.0 26.0 49.0 0.0 . 264 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48780612 48780612 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . FBN1 NM_000138 exon26 c.G3161A p.R1054K TCACACCTGCACT . 123.0 52.0 40.0 0.0 . 310 . . Atlas-SNP PDCD7 10081 hgsc.bcm.edu hg19 15 65426109 65426109 + Missense_Mutation SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PDCD7 NM_005707 exon1 c.C11T p.P4L AATGGTGGCAGGG . 71.0 29.0 26.0 0.0 . 22 . . Atlas-SNP IDH3A 3419 hgsc.bcm.edu hg19 15 78454584 78454584 + Silent SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . IDH3A NM_005530 exon6 c.T486C p.D162D TGTTGATGGAGTC . 106.0 64.0 26.0 0.0 . 24 . . Atlas-SNP UNKL 64718 hgsc.bcm.edu hg19 16 1420138 1420138 + Silent SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . UNKL NM_001193388 exon12 c.C1578T p.S526S TAGGGGGCTGTAG . 33.0 13.0 11.0 0.0 . 46 . . Atlas-SNP ZSCAN32 54925 hgsc.bcm.edu hg19 16 3433548 3433548 + Missense_Mutation SNP T T G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . . NM_017810 exon6 c.A762C p.R254S AGAATTTCTACAT . 307.0 121.0 112.0 0.0 . . . . Atlas-SNP XPO6 23214 hgsc.bcm.edu hg19 16 28112968 28112968 + Silent SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . XPO6 NM_015171 exon23 c.G3087T p.V1029V GAGCAGCACGTTC . 40.0 16.0 24.0 0.0 . 177 . . Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30750324 30750324 + Missense_Mutation SNP C C T rs369907818 TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SRCAP NM_006662 exon34 c.C8963T p.T2988I CTGCTACTGTTGC . 91.0 35.0 40.0 0.0 . 298 . . Atlas-SNP PDPR 55066 hgsc.bcm.edu hg19 16 70190496 70190496 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PDPR NM_017990 exon19 c.G2354T p.W785L CTTGGTGGGGAGA . 176.0 24.0 65.0 0.0 . 66 . . Atlas-SNP TCF25 22980 hgsc.bcm.edu hg19 16 89960138 89960138 + Missense_Mutation SNP C C G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TCF25 NM_014972 exon7 c.C700G p.L234V CCAGGTCTGTCCA . 153.0 42.0 30.0 0.0 . 61 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578554 7578554 + Missense_Mutation SNP A A C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 TP53_ENST00000545858,NS,carcinoma,0,1 TP53 NM_000546 exon5 c.T376G p.Y126D GGGAGTACTGTAG . 21.0 14.0 17.0 0.0 . 33396 . . Atlas-SNP MYO18A 399687 hgsc.bcm.edu hg19 17 27493801 27493801 + Missense_Mutation SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MYO18A NM_078471 exon2 c.A158G p.K53R TCACGCTTGGAGG . 225.0 81.0 79.0 0.0 . 217 . . Atlas-SNP GPR179 440435 hgsc.bcm.edu hg19 17 36483358 36483358 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . GPR179 NM_001004334 exon11 c.G6094T p.V2032L TTGACACCCCTTT . 142.0 57.0 70.0 0.0 . 170 . . Atlas-SNP G6PC3 92579 hgsc.bcm.edu hg19 17 42152763 42152763 + Missense_Mutation SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . G6PC3 NM_138387 exon5 c.G621A p.M207I CCTCATGCTAGGC . 286.0 99.0 93.0 0.0 . 26 . . Atlas-SNP SRSF1 6426 hgsc.bcm.edu hg19 17 56083127 56083127 + Missense_Mutation SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SRSF1 NM_001078166 exon3 c.A587G p.N196S ATCCAATTCTGGT . 117.0 39.0 58.0 0.0 . 41 . . Atlas-SNP UNC13D 201294 hgsc.bcm.edu hg19 17 73836847 73836847 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . UNC13D NM_199242 exon8 c.C679A p.R227S ACCTGCGAAGCCC . 251.0 68.0 53.0 0.0 . 68 . . Atlas-SNP EVPL 2125 hgsc.bcm.edu hg19 17 74003252 74003252 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . EVPL NM_001988 exon22 c.C6034A p.P2012T CCGCTGGCAGGAG . 72.0 11.0 6.0 0.0 . 155 . . Atlas-SNP LOC100653515 0 hgsc.bcm.edu hg19 17 76886840 76886840 + Silent SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . . NM_001243540 exon3 c.C1746T p.D582D CCGGTCGTCGTCG . 599.0 126.0 120.0 0.0 . . . . Atlas-SNP ZNF407 55628 hgsc.bcm.edu hg19 18 72346946 72346946 + Missense_Mutation SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ZNF407 NM_001146190 exon1 c.G3971A p.G1324D AGGATGGCCCAGC . 104.0 48.0 48.0 0.0 . 231 . . Atlas-SNP AKAP8L 26993 hgsc.bcm.edu hg19 19 15512065 15512065 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . AKAP8L NM_014371 exon5 c.G712A p.G238S CCCCACCTCGCAT . 22.0 17.0 19.0 0.0 . 64 . . Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657886 49657886 + Silent SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . HRC NM_002152 exon1 c.G609A p.E203E GGCCTCCTCTTCC . 219.0 9.0 79.0 0.0 . 85 . . Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657916 49657916 + Silent SNP T T C rs7409255 TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . HRC NM_002152 exon1 c.A579G p.E193E CTCCTCTTCTCCT . 238.0 14.0 84.0 0.0 . 85 . . Atlas-SNP ZNF808 388558 hgsc.bcm.edu hg19 19 53057994 53057994 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ZNF808 NM_001039886 exon5 c.G1825T p.A609S AAATCAGCTCTTG . 77.0 30.0 39.0 0.0 . 81 . . Atlas-SNP ZNF611 81856 hgsc.bcm.edu hg19 19 53209133 53209133 + Missense_Mutation SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ZNF611 NM_030972 exon7 c.A1175G p.H392R CCAGTATGAATTC . 107.0 41.0 60.0 0.0 . 72 . . Atlas-SNP PCNA 5111 hgsc.bcm.edu hg19 20 5096123 5096123 + Silent SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PCNA NM_002592 exon6 c.A678G p.T226T ACTGAGTGTCACC . 239.0 104.0 93.0 0.0 . 17 . . Atlas-SNP BPIFA1 51297 hgsc.bcm.edu hg19 20 31825880 31825880 + Silent SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . . NM_016583 exon3 c.G180T p.L60L CCTGCTGTCTGGG . 95.0 38.0 37.0 0.0 . . . . Atlas-SNP PREX1 57580 hgsc.bcm.edu hg19 20 47269916 47269916 + Missense_Mutation SNP G G A rs371398821 TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . PREX1 NM_020820 exon20 c.C2329T p.R777W CGCGCCGACTCCG . 55.0 27.0 22.0 0.0 . 441 . . Atlas-SNP CABLES2 81928 hgsc.bcm.edu hg19 20 60968622 60968622 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CABLES2 NM_031215 exon6 c.C754A p.L252M TGACCAGGGCGTT . 120.0 57.0 52.0 0.0 . 30 . . Atlas-SNP GART 2618 hgsc.bcm.edu hg19 21 34876612 34876612 + Missense_Mutation SNP T T A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . GART NM_001136005 exon22 c.A2852T p.D951V CCAGCATCCACAT . 99.0 35.0 46.0 0.0 . 81 . . Atlas-SNP PLAC4 191585 hgsc.bcm.edu hg19 21 42551311 42551311 + Missense_Mutation SNP A A G rs201045863 TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . . NM_182832 exon1 c.T245C p.I82T GAGGGTATCCAGG . 394.0 36.0 123.0 0.0 . . . . Atlas-SNP KRTAP10-6 386674 hgsc.bcm.edu hg19 21 46011435 46011435 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KRTAP10-6 NM_198688 exon1 c.G931T p.V311L TGCACACAGGGTG . 306.0 119.0 95.0 0.0 . 57 . . Atlas-SNP MICAL3 57553 hgsc.bcm.edu hg19 22 18273818 18273818 + Missense_Mutation SNP C C T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MICAL3 NM_015241 exon31 c.G5770A p.E1924K GGTCTTCCAGCTC . 52.0 21.0 21.0 0.0 . 53 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26423608 26423608 + Silent SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MYO18B NM_032608 exon43 c.T7668C p.D2556D CGACGATGTTGCG . 93.0 35.0 39.0 0.0 . 322 . . Atlas-SNP SEZ6L 23544 hgsc.bcm.edu hg19 22 26706636 26706636 + Silent SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SEZ6L NM_001184777 exon7 c.G1515A p.R505R TGCCAGGATGACG . 102.0 36.0 44.0 0.0 . 174 . . Atlas-SNP TRIOBP 11078 hgsc.bcm.edu hg19 22 38119757 38119757 + Missense_Mutation SNP A A T rs199535040 TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TRIOBP NM_001039141 exon7 c.A1194T p.Q398H CACTCAACGAGAG . 116.0 10.0 36.0 0.0 . 262 . . Atlas-SNP TRMU 55687 hgsc.bcm.edu hg19 22 46751486 46751486 + Splice_Site SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TRMU NM_018006 exon9 c.1018+1G>A . CACTAGGTGACTG . 53.0 39.0 27.0 0.0 . 23 . . Atlas-SNP MXRA5 25878 hgsc.bcm.edu hg19 X 3240505 3240505 + Missense_Mutation SNP T T A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MXRA5 NM_015419 exon5 c.A3221T p.E1074V TCTCCCTCTAGCA . 520.0 190.0 132.0 0.0 . 815 . . Atlas-SNP FRMPD4 9758 hgsc.bcm.edu hg19 X 12712563 12712563 + Missense_Mutation SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . FRMPD4 NM_014728 exon9 c.T923C p.L308P AGTATCTCTATGT . 328.0 132.0 103.0 0.0 . 214 . . Atlas-SNP ATXN3L 92552 hgsc.bcm.edu hg19 X 13337139 13337139 + Silent SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ATXN3L NM_001135995 exon1 c.C915A p.G305G ACTGTGGCCCGGC . 457.0 213.0 141.0 0.0 . 64 . . Atlas-SNP SCML1 6322 hgsc.bcm.edu hg19 X 17768332 17768332 + Missense_Mutation SNP G G T rs199560760 by1000genomes;alternate_allele TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . SCML1 NM_001037540 exon6 c.G622T p.G208W TCTTCAGGGCTCT . 173.0 58.0 77.0 0.0 . 55 . G|1.000;A|0.000 Atlas-SNP DCAF8L1 139425 hgsc.bcm.edu hg19 X 27998516 27998516 + Silent SNP G G A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . DCAF8L1 NM_001017930 exon1 c.C936T p.F312F AATGGTGAACACA . 183.0 59.0 64.0 0.0 . 121 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 31200854 31200854 + Splice_Site SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . DMD NM_004016 exon8 c.770+1G>T . CTAATACCTGAAT . 153.0 58.0 75.0 0.0 . 2127 . . Atlas-SNP CASK 8573 hgsc.bcm.edu hg19 X 41428985 41428985 + Silent SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CASK NM_001126054 exon16 c.A1518G p.K506K ATTCATTTTTAAA . 411.0 162.0 137.0 0.0 . 93 . . Atlas-SNP MAOB 4129 hgsc.bcm.edu hg19 X 43652777 43652777 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MAOB NM_000898 exon8 c.C817A p.H273N TGAAGTGAATCTT . 461.0 152.0 142.0 0.0 . 52 . . Atlas-SNP ARHGEF9 23229 hgsc.bcm.edu hg19 X 62926264 62926264 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ARHGEF9 NM_015185 exon3 c.C255A p.D85E ATTGGGGTCCAGG . 102.0 45.0 49.0 0.0 . 117 . . Atlas-SNP FOXO4 4303 hgsc.bcm.edu hg19 X 70316754 70316754 + Missense_Mutation SNP C C G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . FOXO4 NM_005938 exon1 c.C376G p.Q126E CTTGCCCAGATCT . 283.0 115.0 91.0 0.0 . 60 . . Atlas-SNP TGIF2LX 90316 hgsc.bcm.edu hg19 X 89177576 89177576 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TGIF2LX NM_138960 exon2 c.G492T p.K164N GCCAAAGGGCCAG . 165.0 65.0 68.0 0.0 . 84 . . Atlas-SNP COL4A5 1287 hgsc.bcm.edu hg19 X 107807134 107807134 + Missense_Mutation SNP C C A novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . COL4A5 NM_000495 exon4 c.C254A p.P85Q CAGGGCCACCAGG . 498.0 220.0 148.0 0.0 . 262 . . Atlas-SNP GPR112 139378 hgsc.bcm.edu hg19 X 135487872 135487872 + Silent SNP T T C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . GPR112 NM_153834 exon23 c.T8676C p.S2892S TGATTCTATCTTT . 487.0 173.0 143.0 0.0 . 459 . . Atlas-SNP HTATSF1 27336 hgsc.bcm.edu hg19 X 135582923 135582923 + Silent SNP T T G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . HTATSF1 NM_001163280 exon5 c.T516G p.L172L CAAACTTTACAAA . 579.0 246.0 155.0 0.0 . 66 . . Atlas-SNP VGLL1 51442 hgsc.bcm.edu hg19 X 135618180 135618180 + Missense_Mutation SNP A A G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . VGLL1 NM_016267 exon2 c.A1G p.M1V CTCACAATGGAAG . 46.0 23.0 32.0 0.0 . 41 . . Atlas-SNP ARHGEF6 9459 hgsc.bcm.edu hg19 X 135767930 135767930 + Missense_Mutation SNP G G C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ARHGEF6 NM_004840 exon12 c.C1298G p.S433C GGTTCGGACAGTA . 320.0 118.0 103.0 0.0 . 111 . . Atlas-SNP ND6 0 hgsc.bcm.edu hg19 MT 14459 14459 + Missense_Mutation SNP G G T novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . . ENST00000361681 exon1 c.C215A p.A72E GCCATCGCTGTAG . 358.0 24.0 76.0 0.0 . . . . Atlas-SNP ASAP2 8853 hgsc.bcm.edu hg19 2 9528600 9528601 + Frame_Shift_Ins INS - - G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ASAP2 NM_001135191 exon22 c.2308_2309insG p.S770fs . . 129.0 12.0 43.0 0.0 . 91 . . Atlas-INDEL KCNK16 83795 hgsc.bcm.edu hg19 6 39286869 39286870 + Frame_Shift_Del DEL CC CC - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 CC CC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . KCNK16 NM_001135106 exon2 c.254_255del p.85_85del . . 80.0 25.0 29.0 0.0 . 59 . . Atlas-INDEL TMTC2 160335 hgsc.bcm.edu hg19 12 83250884 83250885 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TMTC2 NM_152588 exon2 c.179_180insC p.G60fs . . 216.0 15.0 62.0 0.0 . 100 . . Atlas-INDEL CEP170B 283638 hgsc.bcm.edu hg19 14 105351860 105351860 + Frame_Shift_Del DEL C C - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . . NM_001112726 exon10 c.1924delG p.A642fs . . 32.0 16.0 8.0 0.0 . . . . Atlas-Indel,Pindel VGLL2 245806 hgsc.bcm.edu hg19 6 117589420 117589421 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . VGLL2 NM_182645 exon2 c.157_158insC p.S53fs . . 120.0 11.0 34.0 0.0 . 18 . . Atlas-INDEL ZNF322 79692 hgsc.bcm.edu hg19 6 26637760 26637762 + In_Frame_Del DEL TTC TTC - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 TTC TTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . . NM_001242797 exon5 c.1021_1023del p.341_341del . . 1977.0 240.0 191.0 0.0 . . . . Atlas-INDEL MAGEA6 4105 hgsc.bcm.edu hg19 X 151869343 151869343 + Frame_Shift_Del DEL G G - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MAGEA6 NM_005363 exon3 c.32delA p.K11fs . . 237.0 25.0 111.0 0.0 . 53 . . Atlas-INDEL MAGEA3 4102 hgsc.bcm.edu hg19 X 151936132 151936132 + Frame_Shift_Del DEL G G - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MAGEA3 NM_005362 exon3 c.36delT p.P12fs . . 224.0 23.0 118.0 0.0 . 36 . . Atlas-INDEL CMYA5 202333 hgsc.bcm.edu hg19 5 79027939 79027953 + In_Frame_Del DEL ATATTTAGAGCCTGA ATATTTAGAGCCTGA - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 ATATTTAGAGCCTGA ATATTTAGAGCCTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CMYA5 NM_153610 exon2 c.3350_3364del p.1117_1122del . . 176.0 28.0 90.0 0.0 . 643 . . Atlas-Indel,Pindel TTC14 151613 hgsc.bcm.edu hg19 3 180325533 180325533 + Frame_Shift_Del DEL A A - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TTC14 NM_001042601 exon10 c.1269delG p.Q423fs . . 238.0 102.0 97.0 0.0 . 112 . . Atlas-Indel,Pindel MPEG1 219972 hgsc.bcm.edu hg19 11 58979138 58979139 + Frame_Shift_Ins INS - - G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . MPEG1 NM_001039396 exon1 c.1201_1202insC p.E401fs . . 127.0 38.0 55.0 0.0 . 72 . . Atlas-Indel,Pindel VRTN 55237 hgsc.bcm.edu hg19 14 74824462 74824463 + Frame_Shift_Ins INS - - G novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 VRTN,caecum,carcinoma,0,1 VRTN NM_018228 exon2 c.976_977insG p.R326fs . . 26.0 10.0 20.0 0.0 . 79 . . Atlas-INDEL NPAS2 4862 hgsc.bcm.edu hg19 2 101554302 101554302 + Frame_Shift_Del DEL C C - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . NPAS2 NM_002518 exon5 c.360delA p.L120fs . . 222.0 97.0 71.0 0.0 . 88 . . Atlas-Indel,Pindel VWA5B1 127731 hgsc.bcm.edu hg19 1 20671955 20671956 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . VWA5B1 NM_001039500 exon17 c.2633_2634insC p.N878fs . . 143.0 13.0 49.0 0.0 . 44 . . Atlas-INDEL ZNF469 84627 hgsc.bcm.edu hg19 16 88497694 88497695 + Frame_Shift_Del DEL AC AC - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 AC AC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . ZNF469 NM_001127464 exon2 c.3731_3732del p.1244_1244del . . 35.0 18.0 9.0 0.0 . 121 . . Atlas-INDEL JAK1 3716 hgsc.bcm.edu hg19 1 65316546 65316547 + Frame_Shift_Ins INS - - C novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . JAK1 NM_002227 exon12 c.1696_1697insG p.P566fs . . 127.0 12.0 38.0 0.0 . 209 . . Atlas-INDEL HNF1A 6927 hgsc.bcm.edu hg19 12 121416711 121416714 + Frame_Shift_Del DEL GGGA GGGA - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 GGGA GGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . HNF1A NM_000545 exon1 c.139_142del p.47_48del . . 96.0 33.0 42.0 0.0 . 302 . . Atlas-Indel,Pindel TMEM25 84866 hgsc.bcm.edu hg19 11 118402863 118402994 + In_Frame_Del DEL CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG CTCCTGCTGTGTTCCAGGTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACGCCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . TMEM25 NM_001144038 exon3 c.71_184del p.24_62del . . 12.0 12.0 0.0 0.0 . 24 . . Pindel CDC27 996 hgsc.bcm.edu hg19 17 45234594 45234729 + Frame_Shift_Del DEL CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . CDC27 NM_001114091 exon6 c.601_631del p.201_211del . . 15.0 15.0 0.0 0.0 . 337 . . Pindel NCAM1 4684 hgsc.bcm.edu hg19 11 112832332 112832363 + Frame_Shift_Del DEL CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 CATCCCTCCCAGCCAGCAGATTACAATGCTGC CATCCCTCCCAGCCAGCAGATTACAATGCTGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . NCAM1 NM_001242607 wholegene . . . . 31.0 31.0 0.0 0.0 . 372 . . Pindel BCLAF1 9774 hgsc.bcm.edu hg19 6 136582246 136582439 + Frame_Shift_Del DEL TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT - novel TCGA-DD-A1EB-01A-11D-A12Z-10 TCGA-DD-A1EB-10A-01D-A12Z-10 TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 90611290-e44c-438e-91aa-f3b83dae3b71 239524f2-0ff6-4bc9-b813-0bb78ff48919 . BCLAF1 NM_014739 exon13 c.2758_3016del p.920_921del . . 10.0 10.0 0.0 0.0 . 203 . . Pindel