Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
H6PD	9563	hgsc.bcm.edu	hg19	1	9305494	9305494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	H6PD	NM_004285	exon2	c.G501A	p.W167X	CGCCTGGCTGCGG	.	42.0	20.0	30.0	0.0	.	71	.	.	Atlas-SNP
CLSTN1	22883	hgsc.bcm.edu	hg19	1	9795606	9795606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CLSTN1	NM_001009566	exon13	c.C1802A	p.A601D	TGCATGGCCTTAT	.	215.0	92.0	98.0	0.0	.	88	.	.	Atlas-SNP
IL12RB2	3595	hgsc.bcm.edu	hg19	1	67861669	67861669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	IL12RB2	NM_001559	exon16	c.T2486C	p.L829P	TCTCCCTTTCTGT	.	335.0	124.0	130.0	0.0	.	94	.	.	Atlas-SNP
AMY2A	279	hgsc.bcm.edu	hg19	1	104160673	104160673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	AMY2A	NM_000699	exon2	c.G266C	p.G89A	GATCTGGAAATGA	.	1043.0	374.0	189.0	0.0	.	36	.	.	Atlas-SNP
FNDC7	163479	hgsc.bcm.edu	hg19	1	109270564	109270564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	FNDC7	NM_001144937	exon7	c.G1246A	p.D416N	TGCAATGACACTA	.	200.0	91.0	96.0	0.0	.	113	.	.	Atlas-SNP
ATP1A1	476	hgsc.bcm.edu	hg19	1	116933025	116933025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ATP1A1	NM_001160233	exon9	c.A1214C	p.N405T	CAGAGAATCAGAG	.	191.0	66.0	88.0	0.0	.	87	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	hg19	1	145367777	145367777	+	Missense_Mutation	SNP	G	G	T	rs200743139	bycluster	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	NBPF10,NS,carcinoma,0,1	NBPF10	NM_001039703	exon83	c.G10373T	p.R3458M	GAAGAAGGGGAAG	.	24.0	10.0	6.0	2.0	.	221	.	.	Atlas-SNP
TRIM46	80128	hgsc.bcm.edu	hg19	1	155151089	155151089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TRIM46	NM_025058	exon7	c.G1285T	p.V429L	CTGCGAGGTAAGG	.	81.0	19.0	22.0	0.0	.	79	.	.	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	hg19	1	196309631	196309631	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	KCNT2	NM_198503	exon16	c.A1623G	p.R541R	AATGTATCGAGGA	.	199.0	42.0	70.0	0.0	.	243	.	.	Atlas-SNP
DDX59	83479	hgsc.bcm.edu	hg19	1	200635118	200635118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DDX59	NM_001031725	exon2	c.T751A	p.S251T	TTCCTGAGCCAGT	.	442.0	102.0	114.0	0.0	.	117	.	.	Atlas-SNP
DYRK3	8444	hgsc.bcm.edu	hg19	1	206820946	206820946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DYRK3	NM_003582	exon3	c.G403T	p.A135S	TCCAAGGCACCCA	.	287.0	177.0	79.0	0.0	.	146	.	.	Atlas-SNP
CHRM3	1131	hgsc.bcm.edu	hg19	1	240071370	240071370	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CHRM3	NM_000740	exon5	c.T619A	p.W207R	TTGTTCTGGCAAT	.	570.0	352.0	124.0	0.0	.	118	.	.	Atlas-SNP
ZNF672	79894	hgsc.bcm.edu	hg19	1	249142604	249142604	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ZNF672	NM_024836	exon4	c.C1131T	p.S377S	CTTCAGCGTCGCC	.	30.0	18.0	5.0	0.0	.	32	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21231053	21231053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	APOB	NM_000384	exon26	c.C8687T	p.P2896L	AGTTTGGGGATGT	.	232.0	100.0	110.0	0.0	.	761	.	.	Atlas-SNP
MEIS1	4211	hgsc.bcm.edu	hg19	2	66667100	66667100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MEIS1	NM_002398	exon3	c.C365A	p.A122D	ATATAGCCGTGTT	.	87.0	26.0	45.0	0.0	.	52	.	.	Atlas-SNP
CNOT11	55571	hgsc.bcm.edu	hg19	2	101885756	101885756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	.	NM_017546	exon7	c.A1414T	p.I472L	TTGTTTATAGAAG	.	188.0	74.0	94.0	0.0	.	.	.	.	Atlas-SNP
CAB39	51719	hgsc.bcm.edu	hg19	2	231624746	231624746	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CAB39	NM_001130849	exon2	c.A30G	p.K10K	TCACAAATCTCCA	.	267.0	114.0	100.0	0.0	.	30	.	.	Atlas-SNP
ATP2B2	491	hgsc.bcm.edu	hg19	3	10443888	10443888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ATP2B2	NM_001683	exon4	c.G542T	p.G181V	TGCAGGCCCCGGA	.	95.0	40.0	45.0	0.0	.	304	.	.	Atlas-SNP
DAZL	1618	hgsc.bcm.edu	hg19	3	16639045	16639045	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DAZL	NM_001190811	exon4	c.T306C	p.Y102Y	AAATCCATAGCTA	.	198.0	68.0	112.0	0.0	.	23	.	.	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	hg19	3	52662939	52662939	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PBRM1	NM_018313	exon13	c.C1414T	p.R472X	GAACTCGCTTGTA	.	104.0	60.0	79.0	0.0	.	1252	.	.	Atlas-SNP
MCM2	4171	hgsc.bcm.edu	hg19	3	127323584	127323584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MCM2	NM_004526	exon3	c.G370A	p.A124T	CGGGAGGCTGGCC	.	51.0	20.0	8.0	0.0	.	79	.	.	Atlas-SNP
MCM2	4171	hgsc.bcm.edu	hg19	3	127323585	127323585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MCM2	NM_004526	exon3	c.C371T	p.A124V	GGGAGGCTGGCCG	.	51.0	21.0	6.0	0.0	.	79	.	.	Atlas-SNP
MCM2	4171	hgsc.bcm.edu	hg19	3	127323589	127323589	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MCM2	NM_004526	exon3	c.C375A	p.G125G	GGCTGGCCGGGGC	.	55.0	21.0	8.0	0.0	.	79	.	.	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	hg19	3	130113755	130113755	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	COL6A5	NM_153264	exon8	c.C3015T	p.D1005D	AGCTGACGTGATT	.	124.0	47.0	73.0	0.0	.	205	.	.	Atlas-SNP
MRPS22	56945	hgsc.bcm.edu	hg19	3	139062911	139062911	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MRPS22	NM_020191	exon1	c.A43T	p.R15W	CTCTTGAGGAGTT	.	64.0	18.0	26.0	0.0	.	40	.	.	Atlas-SNP
EIF4A2	1974	hgsc.bcm.edu	hg19	3	186504304	186504304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	EIF4A2,NS,carcinoma,0,1	EIF4A2	NM_001967	exon7	c.C641T	p.S214F	TGCTTTCTGCCAC	.	405.0	154.0	138.0	0.0	.	55	.	.	Atlas-SNP
ATP13A3	79572	hgsc.bcm.edu	hg19	3	194126804	194126804	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ATP13A3	NM_024524	exon32	c.C3525T	p.A1175A	GCCCAGGGCCCAG	.	198.0	79.0	96.0	0.0	.	94	.	.	Atlas-SNP
GPRIN3	285513	hgsc.bcm.edu	hg19	4	90170546	90170546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	GPRIN3,NS,carcinoma,0,1	GPRIN3	NM_198281	exon2	c.C716T	p.T239I	TCTCTAGTTAGAG	.	101.0	39.0	59.0	0.0	.	90	.	.	Atlas-SNP
TBCK	93627	hgsc.bcm.edu	hg19	4	107092414	107092414	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TBCK	NM_001163436	exon23	c.A2073G	p.E691E	ACAGCGTTCAATG	.	255.0	96.0	112.0	0.0	.	89	.	.	Atlas-SNP
DKK2	27123	hgsc.bcm.edu	hg19	4	107845310	107845310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	DKK2,NS,neuroblastoma,0,1	DKK2	NM_014421	exon4	c.G581A	p.C194Y	GCACAGCAAAACC	.	179.0	79.0	84.0	0.0	.	96	.	.	Atlas-SNP
GYPE	2996	hgsc.bcm.edu	hg19	4	144801632	144801632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	GYPE	NM_198682	exon2	c.C68A	p.T23N	ACACCAGTGGTAC	.	1165.0	214.0	188.0	0.0	.	21	.	.	Atlas-SNP
NPY2R	4887	hgsc.bcm.edu	hg19	4	156135578	156135578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	NPY2R,right_upper_lobe,carcinoma,0,1	NPY2R	NM_000910	exon2	c.C487G	p.R163G	TCCAAGCGAATCA	.	48.0	19.0	14.0	0.0	.	87	.	.	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	hg19	5	54635850	54635850	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SKIV2L2	NM_015360	exon6	c.A528G	p.A176A	CATTGCATTGGCC	.	198.0	108.0	71.0	0.0	.	104	.	.	Atlas-SNP
PAM	5066	hgsc.bcm.edu	hg19	5	102203011	102203011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PAM	NM_138822	exon2	c.T124A	p.C42S	AATGAATGTCTTG	.	237.0	66.0	78.0	0.0	.	180	.	.	Atlas-SNP
FEM1C	56929	hgsc.bcm.edu	hg19	5	114861063	114861063	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	FEM1C	NM_020177	exon3	c.T796G	p.L266V	ATTTCAAAGCCCC	.	223.0	64.0	95.0	0.0	.	50	.	.	Atlas-SNP
PCDHGC5	56097	hgsc.bcm.edu	hg19	5	140871440	140871440	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PCDHGC5	NM_032407	exon1	c.A2633T	p.D878V	TGGCCGATTAAGG	.	141.0	28.0	40.0	0.0	.	199	.	.	Atlas-SNP
USP49	25862	hgsc.bcm.edu	hg19	6	41773689	41773689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	USP49	NM_018561	exon4	c.A1033C	p.I345L	TCTGGATGAGCTC	.	34.0	13.0	15.0	0.0	.	58	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75884785	75884785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	COL12A1	NM_004370	exon13	c.C2679A	p.D893E	GAGGGCGTCTCCA	.	170.0	69.0	75.0	0.0	.	385	.	.	Atlas-SNP
PHF10	55274	hgsc.bcm.edu	hg19	6	170105298	170105298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PHF10	NM_018288	exon11	c.A1342G	p.M448V	ACATCATTTCTTC	.	160.0	54.0	81.0	0.0	.	76	.	.	Atlas-SNP
ZNF735	730291	hgsc.bcm.edu	hg19	7	63680468	63680468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	.	NM_001159524	exon4	c.C1039A	p.H347N	ATAATTCATACTG	.	31.0	9.0	22.0	0.0	.	.	.	.	Atlas-SNP
SRCRB4D	136853	hgsc.bcm.edu	hg19	7	76029847	76029847	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SRCRB4D	NM_080744	exon4	c.C231A	p.G77G	CCAGGAGCCACCG	.	45.0	18.0	14.0	0.0	.	47	.	.	Atlas-SNP
CCDC146	57639	hgsc.bcm.edu	hg19	7	76909777	76909777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CCDC146	NM_020879	exon14	c.A1726G	p.N576D	CACGCCAACAATG	.	126.0	50.0	92.0	0.0	.	87	.	.	Atlas-SNP
PEG10	23089	hgsc.bcm.edu	hg19	7	94293700	94293700	+	Missense_Mutation	SNP	C	C	T	rs376581536		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PEG10	NM_001172438	exon2	c.C1060T	p.R354C	GGTGCCCGCATGC	.	50.0	18.0	16.0	0.0	.	36	.	.	Atlas-SNP
ARMC10	83787	hgsc.bcm.edu	hg19	7	102738867	102738867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ARMC10	NM_031905	exon7	c.A899G	p.Q300R	CTGTGCAGCCTAC	.	612.0	166.0	175.0	0.0	.	25	.	.	Atlas-SNP
TCEA1	6917	hgsc.bcm.edu	hg19	8	54912542	54912542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TCEA1	NM_006756	exon3	c.G195T	p.L65F	CTTTGCCAAAGAT	.	392.0	141.0	151.0	0.0	.	30	.	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73848335	73848335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	KCNB2	NM_004770	exon3	c.C745G	p.L249V	GAGTACCTTTTGC	.	294.0	111.0	124.0	0.0	.	228	.	.	Atlas-SNP
LRP12	29967	hgsc.bcm.edu	hg19	8	105510097	105510097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	LRP12	NM_013437	exon5	c.A683G	p.K228R	TAAACTTTGGTAA	.	221.0	105.0	110.0	0.0	.	124	.	.	Atlas-SNP
IFNA8	3445	hgsc.bcm.edu	hg19	9	21409564	21409564	+	Missense_Mutation	SNP	T	T	C	rs28383787	alternate_allele	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	IFNA8	NM_002170	exon1	c.T389C	p.I130T	GGGTGATAGAGTC	.	258.0	110.0	102.0	0.0	.	19	.	.	Atlas-SNP
COL15A1	1306	hgsc.bcm.edu	hg19	9	101749575	101749575	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	COL15A1	NM_001855	exon4	c.649-1G>A	.	TCCCCAGGGCTCC	.	65.0	27.0	25.0	0.0	.	211	.	.	Atlas-SNP
PTPN3	5774	hgsc.bcm.edu	hg19	9	112200499	112200499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PTPN3	NM_001145368	exon8	c.A482G	p.Y161C	GAATTATAGTCTC	.	35.0	11.0	24.0	0.0	.	106	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	140880982	140880982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CACNA1B	NM_001243812	exon14	c.G1887T	p.Q629H	GATGCAGCTGTTT	.	298.0	110.0	109.0	0.0	.	266	.	.	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	390969	390969	+	Missense_Mutation	SNP	C	C	A	rs200340134	by1000genomes;alternate_allele	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DIP2C	NM_014974	exon27	c.G3313T	p.V1105F	TCCTGACGTCCAC	.	54.0	23.0	29.0	0.0	.	195	.	C|1.000;T|0.000	Atlas-SNP
OGDHL	55753	hgsc.bcm.edu	hg19	10	50947868	50947868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	OGDHL	NM_018245	exon17	c.G2158T	p.A720S	CCATGGCATAGCC	.	67.0	29.0	33.0	0.0	.	149	.	.	Atlas-SNP
DGAT2	84649	hgsc.bcm.edu	hg19	11	75508294	75508294	+	Silent	SNP	T	T	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DGAT2	NM_032564	exon6	c.T726G	p.A242A	TGCGGCTGAGTCT	.	101.0	36.0	40.0	0.0	.	37	.	.	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	hg19	12	18534747	18534747	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PIK3C2G	NM_004570	exon13	c.A1805T	p.E602V	AGAGTGAGCCTCC	.	120.0	51.0	60.0	0.0	.	315	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80998958	80998958	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	PTPRQ	NM_001145026	exon24	c.C4214A	p.S1405X	TCAAATCGGTAAG	.	102.0	34.0	63.0	0.0	.	119	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116429410	116429410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MED13L	NM_015335	exon17	c.G3349A	p.D1117N	CGGAATCGGAGAG	.	128.0	48.0	57.0	0.0	.	193	.	.	Atlas-SNP
RFXAP	5994	hgsc.bcm.edu	hg19	13	37399580	37399580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	RFXAP	NM_000538	exon2	c.A616G	p.I206V	GATAACATACTCT	.	72.0	19.0	35.0	0.0	.	14	.	.	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42877120	42877120	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	AKAP11	NM_016248	exon8	c.C4238A	p.S1413X	TGTTTTCAAACAA	.	56.0	17.0	54.0	0.0	.	146	.	.	Atlas-SNP
COG3	83548	hgsc.bcm.edu	hg19	13	46077404	46077404	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	COG3	NM_031431	exon14	c.A1514T	p.E505V	AAGATGAACAGAA	.	109.0	15.0	77.0	0.0	.	52	.	.	Atlas-SNP
COG3	83548	hgsc.bcm.edu	hg19	13	46077405	46077405	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	COG3	NM_031431	exon14	c.A1515T	p.E505D	AGATGAACAGAAG	.	111.0	18.0	78.0	0.0	.	52	.	.	Atlas-SNP
SLITRK1	114798	hgsc.bcm.edu	hg19	13	84454266	84454266	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SLITRK1	NM_052910	exon1	c.C1377T	p.I459I	GAGCTGGATAGCG	.	153.0	51.0	65.0	0.0	.	196	.	.	Atlas-SNP
DHRS4	10901	hgsc.bcm.edu	hg19	14	24435604	24435604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DHRS4	NM_021004	exon6	c.T644G	p.I215S	GACTTATCAAGAC	.	1253.0	258.0	182.0	0.0	.	22	.	.	Atlas-SNP
FOXG1	2290	hgsc.bcm.edu	hg19	14	29237348	29237348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	FOXG1	NM_005249	exon1	c.G863A	p.R288H	TCAAGCGCGGTGC	.	37.0	16.0	9.0	0.0	.	92	.	.	Atlas-SNP
DAAM1	23002	hgsc.bcm.edu	hg19	14	59820665	59820665	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DAAM1	NM_014992	exon19	c.T2369A	p.V790E	CAGAAGTGAAACC	.	112.0	46.0	69.0	0.0	.	95	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68274238	68274238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	ZFYVE26,NS,carcinoma,0,1	ZFYVE26	NM_015346	exon5	c.C763T	p.R255W	CCTCCCGCAGGGG	.	64.0	21.0	38.0	0.0	.	223	.	.	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72190408	72190408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SIPA1L1	NM_015556	exon16	c.G4316A	p.S1439N	TCACCAGTGCCCG	.	124.0	41.0	68.0	0.0	.	219	.	.	Atlas-SNP
DPF3	8110	hgsc.bcm.edu	hg19	14	73159816	73159816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	DPF3	NM_012074	exon7	c.C710T	p.S237F	GGTGGGGACCGAG	.	462.0	175.0	159.0	0.0	.	117	.	.	Atlas-SNP
PROX2	283571	hgsc.bcm.edu	hg19	14	75330524	75330524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	PROX2_ENST00000445876,NS,carcinoma,0,2	PROX2	NM_001080408	exon1	c.C14A	p.S5Y	AAGATGGAGTTTG	.	21.0	9.0	10.0	0.0	.	44	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28446674	28446674	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	HERC2	NM_004667	exon48	c.C7644G	p.S2548R	CGTCTGGCTCTCC	.	378.0	146.0	135.0	0.0	.	501	.	.	Atlas-SNP
AQR	9716	hgsc.bcm.edu	hg19	15	35198872	35198872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	AQR	NM_014691	exon18	c.C1705A	p.P569T	TTGTGGGACGTAC	.	100.0	39.0	58.0	0.0	.	139	.	.	Atlas-SNP
PEAK1	0	hgsc.bcm.edu	hg19	15	77425574	77425574	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	.	NM_024776	exon7	c.G3850T	p.E1284X	CTTCCTCCCGATT	.	234.0	85.0	103.0	0.0	.	.	.	.	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3778620	3778620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CREBBP	NM_004380	exon31	c.A6428G	p.N2143S	ATGGCATTCAGGT	.	63.0	18.0	23.0	0.0	.	546	.	.	Atlas-SNP
GGA2	23062	hgsc.bcm.edu	hg19	16	23489767	23489767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	GGA2	NM_015044	exon13	c.C1214T	p.P405L	CCGCCTGGCAGCG	.	101.0	44.0	58.0	0.0	.	49	.	.	Atlas-SNP
IL21R	50615	hgsc.bcm.edu	hg19	16	27460101	27460101	+	Missense_Mutation	SNP	G	G	T	rs36031126	bycluster;alternate_allele	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	IL21R	NM_181079	exon10	c.G1180T	p.G394C	CCATACGGCCTGG	.	56.0	19.0	19.0	0.0	.	95	.	G|0.986;A|0.014	Atlas-SNP
CES4A	283848	hgsc.bcm.edu	hg19	16	67038121	67038121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CES4A	NM_173815	exon9	c.G1074T	p.L358F	GCTCTTGCCTTAT	.	210.0	76.0	79.0	0.0	.	24	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89349770	89349770	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ANKRD11	NM_001256183	exon9	c.A3180G	p.K1060K	GGTATCTTTTTTC	.	277.0	115.0	124.0	0.0	.	195	.	.	Atlas-SNP
MED13	9969	hgsc.bcm.edu	hg19	17	60088347	60088347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MED13	NM_005121	exon9	c.A1531G	p.I511V	TTCGGATATTTGA	.	539.0	148.0	155.0	0.0	.	181	.	.	Atlas-SNP
TYMS	7298	hgsc.bcm.edu	hg19	18	671451	671451	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TYMS	NM_001071	exon6	c.G804A	p.Q268Q	AATTCAGGTAAGA	.	151.0	57.0	72.0	0.0	.	27	.	.	Atlas-SNP
VPS4B	9525	hgsc.bcm.edu	hg19	18	61067824	61067824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	VPS4B	NM_004869	exon6	c.A597G	p.I199M	GGAAGATATTGAA	.	211.0	88.0	99.0	0.0	.	33	.	.	Atlas-SNP
ATCAY	85300	hgsc.bcm.edu	hg19	19	3910853	3910853	+	Missense_Mutation	SNP	C	C	T	rs376658701		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	ATCAY_ENST00000450849,rectum,carcinoma,0,1	ATCAY	NM_033064	exon8	c.C832T	p.R278W	TTCATTCGGACTG	.	137.0	63.0	64.0	0.0	.	84	.	.	Atlas-SNP
ZNF441	126068	hgsc.bcm.edu	hg19	19	11888443	11888443	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	ZNF441	NM_152355	exon2	c.G21A	p.E7E	ATTTGAGGATGTG	.	223.0	78.0	104.0	0.0	.	123	.	.	Atlas-SNP
FUZ	80199	hgsc.bcm.edu	hg19	19	50314913	50314913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	FUZ	NM_025129	exon4	c.T362C	p.V121A	CTCTCCACGTTGC	.	195.0	73.0	102.0	0.0	.	18	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56029616	56029616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SSC5D	NM_001144950	exon14	c.C3973A	p.P1325T	CCTCACCCCACAA	.	153.0	8.0	29.0	0.0	.	65	.	.	Atlas-SNP
ZSCAN1	284312	hgsc.bcm.edu	hg19	19	58565348	58565348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	ZSCAN1,NS,carcinoma,0,1	ZSCAN1	NM_182572	exon6	c.G1156A	p.G386R	GTCTGCGGGAAGG	.	43.0	10.0	31.0	0.0	.	102	.	.	Atlas-SNP
SYNGR1	9145	hgsc.bcm.edu	hg19	22	39777778	39777778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SYNGR1	NM_004711	exon4	c.C561A	p.D187E	CATGGACCCCAGC	.	97.0	36.0	27.0	0.0	.	19	.	.	Atlas-SNP
CNKSR2	22866	hgsc.bcm.edu	hg19	X	21545015	21545015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CNKSR2	NM_001168647	exon10	c.G988A	p.V330I	AGCAGCGTTGCCA	.	177.0	163.0	60.0	0.0	.	158	.	.	Atlas-SNP
TAF7L	54457	hgsc.bcm.edu	hg19	X	100547906	100547906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TAF7L	NM_024885	exon1	c.A128T	p.Y43F	CTTTCATAGGTGG	.	236.0	213.0	69.0	0.0	.	64	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13344	13344	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	.	ENST00000361567	exon1	c.A1008G	p.K336K	CTTCAAAGCCATA	.	302.0	282.0	82.0	0.0	.	.	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	14813	14813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	.	ENST00000361789	exon1	c.A67G	p.T23A	CTCCCCACCCCAT	.	296.0	26.0	91.0	0.0	.	.	.	.	Atlas-SNP
SIAH1	6477	hgsc.bcm.edu	hg19	16	48395633	48395644	+	In_Frame_Del	DEL	CAAGTCAATCGT	CAAGTCAATCGT	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	CAAGTCAATCGT	CAAGTCAATCGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	SIAH1	NM_001006610	exon2	c.790_801del	p.264_267del	.	.	162.0	16.0	71.0	0.0	.	33	.	.	Atlas-Indel,Pindel
TBC1D10A	83874	hgsc.bcm.edu	hg19	22	30688449	30688463	+	In_Frame_Del	DEL	GGGGCTGAGTCCTTG	GGGGCTGAGTCCTTG	-	rs36125665	alternate_allele	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	GGGGCTGAGTCCTTG	GGGGCTGAGTCCTTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	TBC1D10A	NM_001204240	exon9	c.1450_1464del	p.484_488del	.	.	81.0	25.0	28.0	0.0	.	49	.	.	Atlas-Indel,Pindel
APOB	338	hgsc.bcm.edu	hg19	2	21245890	21245891	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	APOB,NS,malignant_melanoma,0,1	APOB	NM_000384	exon18	c.2629_2630insA	p.P877fs	.	.	137.0	51.0	79.0	0.0	.	761	.	.	Atlas-Indel,Pindel
COG3	83548	hgsc.bcm.edu	hg19	13	46077408	46077408	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	COG3	NM_031431	exon14	c.1517delA	p.Q506fs	.	.	118.0	18.0	80.0	0.0	.	52	.	.	Atlas-INDEL
C4orf40	401137	hgsc.bcm.edu	hg19	4	71024317	71024318	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	C4orf40	NM_214711	exon3	c.348_349insT	p.R116fs	.	.	108.0	31.0	46.0	0.0	.	19	.	.	Atlas-Indel,Pindel
RPS6KL1	83694	hgsc.bcm.edu	hg19	14	75376302	75376303	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	RPS6KL1	NM_031464	exon7	c.1214_1215insG	p.E405fs	.	.	81.0	36.0	35.0	0.0	.	35	.	.	Atlas-Indel,Pindel
NSMCE2	286053	hgsc.bcm.edu	hg19	8	126114663	126114664	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	NSMCE2	NM_173685	exon3	c.91_92insA	p.Q31fs	.	.	522.0	31.0	140.0	0.0	.	18	.	.	Atlas-INDEL
MMP19	4327	hgsc.bcm.edu	hg19	12	56231749	56231750	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	MMP19	NM_002429	exon7	c.938_939del	p.313_313del	.	.	82.0	33.0	53.0	0.0	.	61	.	.	Atlas-Indel,Pindel
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266093	41266107	+	In_Frame_Del	DEL	CCTGGACTCTGGAAT	CCTGGACTCTGGAAT	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	CCTGGACTCTGGAAT	CCTGGACTCTGGAAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098210	exon3	c.89_103del	p.30_35del	.	.	193.0	27.0	107.0	0.0	.	4904	.	.	Atlas-Indel,Pindel
AFF2	2334	hgsc.bcm.edu	hg19	X	148038047	148038048	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	AFF2	NM_002025	exon11	c.2472_2473insA	p.A824fs	.	.	116.0	11.0	27.0	0.0	.	679	.	.	Atlas-INDEL
UGT2B7	7364	hgsc.bcm.edu	hg19	4	69962823	69962825	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	UGT2B7	NM_001074	exon1	c.584_586del	p.195_196del	.	.	304.0	98.0	104.0	0.0	.	79	.	.	Atlas-Indel,Pindel
COG3	83548	hgsc.bcm.edu	hg19	13	46077399	46077409	+	Frame_Shift_Del	DEL	AGATGAACAGA	AGATGAACAGA	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	AGATGAACAGA	AGATGAACAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	COG3	NM_031431	exon14	c.1508_1518del	p.503_506del	.	.	113.0	13.0	0.0	0.0	.	52	.	.	Pindel
CELA1	1990	hgsc.bcm.edu	hg19	12	51740405	51740433	+	In_Frame_Del	DEL	CTGGACCATATCCACTTACCATAAAGGAC	CTGGACCATATCCACTTACCATAAAGGAC	-	rs372974824	byfrequency;alternate_allele	TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	CTGGACCATATCCACTTACCATAAAGGAC	CTGGACCATATCCACTTACCATAAAGGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CELA1	NM_001971	exon1	c.8_16del	p.3_6del	.	.	110.0	20.0	0.0	0.0	.	39	.	-|0.574;CACCAGGAAGCG|0.426	Pindel
LTBP2	4053	hgsc.bcm.edu	hg19	14	74976564	74976565	+	Splice_Site	INS	-	-	GAAATAGGGCATTGCATTCTGTGTG	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	LTBP2	NM_000428	exon22	c.3152-2->CACACAGAATGCAATGCCCTATTTC	.	.	.	58.0	11.0	0.0	0.0	.	158	.	.	Pindel
CDC27	996	hgsc.bcm.edu	hg19	17	45234594	45234729	+	Frame_Shift_Del	DEL	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	CDC27	NM_001114091	exon6	c.601_631del	p.201_211del	.	.	173.0	12.0	0.0	0.0	.	337	.	.	Pindel
HLA-DPB1	3115	hgsc.bcm.edu	hg19	6	33053994	33054040	+	In_Frame_Del	DEL	TTATATAACCTTTCGTCTTTCATTTCAGTTCAACGAGGATCTGCATA	TTATATAACCTTTCGTCTTTCATTTCAGTTCAACGAGGATCTGCATA	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	TTATATAACCTTTCGTCTTTCATTTCAGTTCAACGAGGATCTGCATA	TTATATAACCTTTCGTCTTTCATTTCAGTTCAACGAGGATCTGCATA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	HLA-DPB1	NM_002121	exon5	c.758_775del	p.253_259del	.	.	278.0	23.0	0.0	0.0	.	28	.	.	Pindel
NCAM1	4684	hgsc.bcm.edu	hg19	11	112832332	112832363	+	Frame_Shift_Del	DEL	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	-	novel		TCGA-DD-A1EA-01A-11D-A12Z-10	TCGA-DD-A1EA-10A-01D-A12Z-10	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f2f6ebbe-5e4e-48ff-9782-de22a56fc3c3	ebf27981-4bd7-4636-ad4e-e6153fba6e66	.	NCAM1	NM_001242607	wholegene	.	.	.	.	80.0	24.0	0.0	0.0	.	372	.	.	Pindel