Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ACTL8	81569	hgsc.bcm.edu	hg19	1	18152300	18152300	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ACTL8	NM_030812	exon3	c.G387C	p.L129L	CCTCCTGGCCGAC	.	123.0	52.0	120.0	0.0	.	58	.	.	Atlas-SNP
LRRC8D	55144	hgsc.bcm.edu	hg19	1	90399468	90399468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	LRRC8D	NM_018103	exon3	c.G841A	p.G281R	AAGGATGGAGAGC	.	52.0	17.0	75.0	0.0	.	78	.	.	Atlas-SNP
RFX5	5993	hgsc.bcm.edu	hg19	1	151314816	151314816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RFX5	NM_000449	exon11	c.G1697T	p.S566I	ATGACACTCACTT	.	489.0	33.0	465.0	0.0	.	69	.	.	Atlas-SNP
RCSD1	92241	hgsc.bcm.edu	hg19	1	167663459	167663459	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RCSD1	NM_052862	exon5	c.T394A	p.S132T	GTGCGATCTAGGC	.	161.0	47.0	102.0	0.0	.	64	.	.	Atlas-SNP
NLRP3	114548	hgsc.bcm.edu	hg19	1	247588697	247588697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	NLRP3	NM_183395	exon3	c.C1952A	p.P651H	ATTTCCCCAAGAT	.	261.0	85.0	243.0	0.0	.	286	.	.	Atlas-SNP
OR2L3	391192	hgsc.bcm.edu	hg19	1	248224574	248224574	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OR2L3	NM_001004687	exon1	c.A591T	p.T197T	GGGCACAGTGTTT	.	1251.0	67.0	1021.0	0.0	.	97	.	.	Atlas-SNP
C2orf74	339804	hgsc.bcm.edu	hg19	2	61389694	61389694	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	C2orf74	NM_001143959	exon1	c.A66G	p.L22L	CCTTCTAATTTGC	.	420.0	196.0	421.0	0.0	.	22	.	.	Atlas-SNP
HTRA2	27429	hgsc.bcm.edu	hg19	2	74757336	74757336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HTRA2	NM_013247	exon1	c.C203G	p.P68R	CTGAACCCCGAGC	.	77.0	31.0	73.0	0.0	.	22	.	.	Atlas-SNP
GTDC1	79712	hgsc.bcm.edu	hg19	2	144903285	144903285	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GTDC1	NM_001006636	exon5	c.G201T	p.V67V	GTTAAGCACTGAA	.	66.0	19.0	103.0	0.0	.	61	.	.	Atlas-SNP
GAD1	2571	hgsc.bcm.edu	hg19	2	171715379	171715379	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GAD1	NM_000817	exon16	c.T1587A	p.P529P	CAGCCCTCAACGA	.	152.0	61.0	217.0	0.0	.	79	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179434262	179434262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TTN	NM_001267550	exon326	c.C76597A	p.P25533T	TTATAGGAACAAA	.	246.0	91.0	270.0	0.0	.	18412	.	.	Atlas-SNP
PECR	55825	hgsc.bcm.edu	hg19	2	216930060	216930060	+	Silent	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PECR	NM_018441	exon3	c.G399C	p.T133T	GGTACCCGTCAGG	.	126.0	55.0	157.0	0.0	.	22	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225721666	225721666	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DOCK10	NM_014689	exon15	c.C1719G	p.D573E	GTCTCTGTCCACA	.	161.0	61.0	230.0	0.0	.	308	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	rs121913412	bycluster	TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.A121G	p.T41A	GCCACTACCACAG	.	200.0	13.0	239.0	1.0	.	4904	.	.	Atlas-SNP
RNF123	63891	hgsc.bcm.edu	hg19	3	49738946	49738946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	RNF123,colon,carcinoma,0,1	RNF123	NM_022064	exon16	c.G1300T	p.V434F	TCCGTCGTCTTCT	.	101.0	53.0	126.0	0.0	.	100	.	.	Atlas-SNP
PLXNA1	5361	hgsc.bcm.edu	hg19	3	126708420	126708420	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PLXNA1	NM_032242	exon1	c.G984A	p.L328L	CCAGCTGGGCCTG	.	66.0	24.0	83.0	0.0	.	185	.	.	Atlas-SNP
TMEM108	66000	hgsc.bcm.edu	hg19	3	133099005	133099005	+	Silent	SNP	C	C	T	rs368132206		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TMEM108	NM_023943	exon4	c.C450T	p.T150T	GGCCACCAGCCGC	.	52.0	24.0	41.0	0.0	.	67	.	.	Atlas-SNP
CLSTN2	64084	hgsc.bcm.edu	hg19	3	140178531	140178531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CLSTN2	NM_022131	exon7	c.T1142C	p.I381T	TCACCATCACCAT	.	90.0	39.0	84.0	0.0	.	190	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55598063	55598063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	KIT	NM_000222	exon16	c.C2260T	p.P754S	GTGACTCCCGCCA	.	138.0	51.0	182.0	0.0	.	7396	.	.	Atlas-SNP
HSD17B11	51170	hgsc.bcm.edu	hg19	4	88293884	88293884	+	Silent	SNP	C	C	A	rs114331860	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HSD17B11	NM_016245	exon4	c.G534T	p.S178S	GGGGACCGAGACA	.	131.0	60.0	186.0	0.0	.	28	.	C|0.995;T|0.005	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155156800	155156800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	DCHS2,caecum,carcinoma,0,1	DCHS2	NM_017639	exon25	c.T7639G	p.F2547V	CTAAAAAGGAGAC	.	157.0	61.0	192.0	0.0	.	594	.	.	Atlas-SNP
TRIML2	205860	hgsc.bcm.edu	hg19	4	189026083	189026083	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	TRIML2,brain,glioma,0,1	TRIML2	NM_173553	exon2	c.T43C	p.L15L	GGAATAACTTCTA	.	164.0	45.0	216.0	1.0	.	80	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71491564	71491564	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MAP1B	NM_005909	exon5	c.T2382A	p.A794A	AGAGGCTGTCGCT	.	77.0	42.0	66.0	0.0	.	243	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71494133	71494133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MAP1B	NM_005909	exon5	c.C4951A	p.Q1651K	TTTGGCCAAGAAT	.	138.0	33.0	128.0	0.0	.	243	.	.	Atlas-SNP
UTP15	84135	hgsc.bcm.edu	hg19	5	72866457	72866457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	UTP15	NM_032175	exon6	c.G594T	p.E198D	GAGTGAGAGTGTT	.	246.0	67.0	227.0	0.0	.	30	.	.	Atlas-SNP
CKMT2	1160	hgsc.bcm.edu	hg19	5	80548514	80548514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	CKMT2,NS,carcinoma,0,1	CKMT2	NM_001825	exon4	c.C153A	p.S51R	ACACAGCGCAGAC	.	51.0	36.0	42.0	0.0	.	44	.	.	Atlas-SNP
RGMB	285704	hgsc.bcm.edu	hg19	5	98115463	98115463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RGMB	NM_001012761	exon4	c.C439G	p.H147D	GTATACCATTCTG	.	86.0	50.0	94.0	0.0	.	29	.	.	Atlas-SNP
RGMB	285704	hgsc.bcm.edu	hg19	5	98129453	98129453	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RGMB	NM_001012761	exon5	c.T1433A	p.L478X	TGTTTTTGTAGGG	.	247.0	135.0	204.0	0.0	.	29	.	.	Atlas-SNP
FER	2241	hgsc.bcm.edu	hg19	5	108203627	108203627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	FER	NM_005246	exon6	c.T641C	p.M214T	AAAAGATGCAAGA	.	237.0	126.0	237.0	0.0	.	100	.	.	Atlas-SNP
PCDHA1	56147	hgsc.bcm.edu	hg19	5	140167846	140167846	+	Silent	SNP	G	G	A	rs376407441		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PCDHA1	NM_031410	exon1	c.G1971A	p.P657P	TGAGCCGGCGCTG	.	175.0	102.0	163.0	0.0	.	387	.	.	Atlas-SNP
PCDHA6	56142	hgsc.bcm.edu	hg19	5	140209428	140209428	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PCDHA6	NM_018909	exon1	c.A1752T	p.S584S	GCGGTCACTGGGT	.	376.0	19.0	284.0	0.0	.	442	.	.	Atlas-SNP
TCERG1	10915	hgsc.bcm.edu	hg19	5	145838668	145838668	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	TCERG1,caecum,carcinoma,0,2	TCERG1	NM_006706	exon4	c.G660A	p.Q220Q	GGCCCAGGCCCAA	.	48.0	6.0	31.0	0.0	.	148	.	.	Atlas-SNP
KIF13A	63971	hgsc.bcm.edu	hg19	6	17828535	17828535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	KIF13A	NM_001105567	exon14	c.C1468G	p.Q490E	AGTGCTGAGGCTG	.	192.0	54.0	268.0	0.0	.	276	.	.	Atlas-SNP
MBOAT1	154141	hgsc.bcm.edu	hg19	6	20151445	20151445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MBOAT1	NM_001080480	exon3	c.G294T	p.M98I	AGTGACCATGATT	.	75.0	32.0	128.0	0.0	.	48	.	.	Atlas-SNP
CLPS	1208	hgsc.bcm.edu	hg19	6	35762977	35762977	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CLPS	NM_001832	exon3	c.C285T	p.S95S	GGTGATGGAGCCC	.	192.0	49.0	248.0	0.0	.	15	.	.	Atlas-SNP
GLO1	2739	hgsc.bcm.edu	hg19	6	38650599	38650599	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GLO1	NM_006708	exon4	c.G361C	p.D121H	GAGGGTCTGAATT	.	120.0	17.0	135.0	0.0	.	12	.	.	Atlas-SNP
GLO1	2739	hgsc.bcm.edu	hg19	6	38650627	38650627	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GLO1	NM_006708	exon4	c.G333A	p.E111E	CTGGGTCTCATCA	.	119.0	11.0	151.0	0.0	.	12	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38738285	38738285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	DNAH8_ENST00000359357,right_upper_lobe,carcinoma,0,2	DNAH8	NM_001206927	exon12	c.G1714A	p.E572K	GTTTCAGAAATGT	.	112.0	11.0	102.0	0.0	.	1239	.	.	Atlas-SNP
NFYA	4800	hgsc.bcm.edu	hg19	6	41051832	41051832	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	NFYA	NM_002505	exon4	c.C210G	p.I70M	GCTAATCACATCA	.	126.0	49.0	143.0	0.0	.	33	.	.	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	hg19	6	42619803	42619803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	UBR2	NM_015255	exon24	c.G2608C	p.D870H	AGAGAAGATACAG	.	174.0	13.0	234.0	0.0	.	134	.	.	Atlas-SNP
OGFRL1	79627	hgsc.bcm.edu	hg19	6	72003250	72003250	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OGFRL1	NM_024576	exon3	c.C336G	p.I112M	AGATATCCGATAT	.	216.0	16.0	232.0	0.0	.	44	.	.	Atlas-SNP
POU3F2	5454	hgsc.bcm.edu	hg19	6	99283990	99283990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	POU3F2	NM_005604	exon1	c.C1241T	p.P414L	TGACCCCTCCCGG	.	35.0	19.0	56.0	0.0	.	33	.	.	Atlas-SNP
GRIK2	2898	hgsc.bcm.edu	hg19	6	102516324	102516324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GRIK2	NM_021956	exon16	c.G2665A	p.E889K	ACAGAAGAAGTTA	.	161.0	14.0	161.0	0.0	.	487	.	.	Atlas-SNP
IL20RA	53832	hgsc.bcm.edu	hg19	6	137323493	137323493	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	IL20RA	NM_014432	exon8	c.865-1G>C	.	CAAAATCTATAAA	.	49.0	7.0	61.0	0.0	.	54	.	.	Atlas-SNP
HEBP2	23593	hgsc.bcm.edu	hg19	6	138734131	138734131	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HEBP2	NM_014320	exon4	c.C534T	p.G178G	TGCAGGCTACAAC	.	133.0	33.0	166.0	0.0	.	12	.	.	Atlas-SNP
ACAT2	39	hgsc.bcm.edu	hg19	6	160196246	160196246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ACAT2	NM_005891	exon5	c.G535C	p.D179H	GATCAGGACAAGG	.	118.0	73.0	70.0	0.0	.	32	.	.	Atlas-SNP
RNASET2	8635	hgsc.bcm.edu	hg19	6	167366035	167366035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RNASET2	NM_003730	exon2	c.G88A	p.D30N	GGTTGTCACTGTT	.	231.0	27.0	265.0	0.0	.	18	.	.	Atlas-SNP
CYP2W1	54905	hgsc.bcm.edu	hg19	7	1026794	1026794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CYP2W1	NM_017781	exon6	c.C871A	p.L291M	TGCACCCTGGACA	.	80.0	34.0	86.0	0.0	.	28	.	.	Atlas-SNP
INTS1	26173	hgsc.bcm.edu	hg19	7	1539152	1539152	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	INTS1	NM_001080453	exon6	c.G801T	p.L267L	CTGCAGCAGCACG	.	55.0	38.0	51.0	0.0	.	145	.	.	Atlas-SNP
ZDHHC4	55146	hgsc.bcm.edu	hg19	7	6624765	6624765	+	Silent	SNP	T	T	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZDHHC4	NM_018106	exon7	c.T615G	p.A205A	CTCGGCTGCCACC	.	349.0	175.0	255.0	1.0	.	36	.	.	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	hg19	7	12414712	12414712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	VWDE	NM_001135924	exon8	c.G1166T	p.R389I	GAGACTCTATCTC	.	232.0	110.0	255.0	0.0	.	123	.	.	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	hg19	7	20199316	20199316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MACC1	NM_182762	exon5	c.G668T	p.G223V	ACTGACCCTCCTT	.	257.0	74.0	225.0	0.0	.	99	.	.	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	hg19	7	34097695	34097695	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	BMPER,NS,carcinoma,0,1	BMPER	NM_133468	exon11	c.A952T	p.N318Y	TCTATCAATTGTA	.	422.0	125.0	346.0	0.0	.	131	.	.	Atlas-SNP
TFPI2	7980	hgsc.bcm.edu	hg19	7	93516721	93516721	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TFPI2	NM_006528	exon4	c.A483G	p.P161P	ATCTTTTGGACTG	.	118.0	70.0	102.0	0.0	.	37	.	.	Atlas-SNP
ANKRD7	56311	hgsc.bcm.edu	hg19	7	117865018	117865018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ANKRD7	NM_019644	exon1	c.T134C	p.L45P	AATACCTTCAGAT	.	187.0	8.0	177.0	0.0	.	44	.	.	Atlas-SNP
ADAM2	2515	hgsc.bcm.edu	hg19	8	39644537	39644537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ADAM2	NM_001464	exon10	c.C847A	p.Q283K	TCCCTTGAAAGGT	.	308.0	110.0	392.0	0.0	.	124	.	.	Atlas-SNP
ANK1	286	hgsc.bcm.edu	hg19	8	41559138	41559138	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ANK1	NM_001142446	exon22	c.A2490G	p.L830L	ACTGACTAACTAA	.	85.0	31.0	148.0	0.0	.	497	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110454292	110454292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PKHD1L1	NM_177531	exon35	c.A4261G	p.T1421A	GGGGACACAGTGG	.	200.0	76.0	245.0	0.0	.	522	.	.	Atlas-SNP
NTRK2	4915	hgsc.bcm.edu	hg19	9	87570246	87570246	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	NTRK2_ENST00000376214,caecum,carcinoma,0,2	NTRK2	NM_006180	exon19	c.G1986T	p.T662T	GCCCACGGAACTG	.	38.0	14.0	41.0	0.0	.	331	.	.	Atlas-SNP
FRRS1L	23732	hgsc.bcm.edu	hg19	9	111899753	111899753	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	.	NM_014334	exon5	c.A1017G	p.L339L	CATCAATAGGTAG	.	91.0	34.0	141.0	0.0	.	.	.	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114213731	114213731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	KIAA0368	NM_001080398	exon4	c.A661G	p.S221G	GGGTGCTAGAGAG	.	165.0	66.0	243.0	0.0	.	144	.	.	Atlas-SNP
LCN8	138307	hgsc.bcm.edu	hg19	9	139651621	139651621	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	LCN8	NM_178469	exon3	c.25-1G>T	.	TCCAATCTAGAGA	.	52.0	21.0	79.0	0.0	.	14	.	.	Atlas-SNP
USP6NL	9712	hgsc.bcm.edu	hg19	10	11532861	11532861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	USP6NL	NM_001080491	exon8	c.T564A	p.H188Q	AAGCACATGGAAT	.	152.0	64.0	203.0	0.0	.	57	.	.	Atlas-SNP
DHTKD1	55526	hgsc.bcm.edu	hg19	10	12131171	12131171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DHTKD1	NM_018706	exon5	c.C904T	p.R302C	AAAACTCGCGGCA	.	49.0	12.0	58.0	0.0	.	104	.	.	Atlas-SNP
ZNF33A	7581	hgsc.bcm.edu	hg19	10	38343322	38343322	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF33A	NM_006954	exon5	c.C270T	p.H90H	TGATCACCTGAAA	.	110.0	52.0	181.0	0.0	.	103	.	.	Atlas-SNP
ZNF239	8187	hgsc.bcm.edu	hg19	10	44052346	44052346	+	Silent	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF239	NM_001099283	exon2	c.C1182G	p.L394L	GACTCTGAGATGG	.	161.0	10.0	289.0	0.0	.	45	.	.	Atlas-SNP
OR51T1	401665	hgsc.bcm.edu	hg19	11	4903945	4903945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OR51T1	NM_001004759	exon1	c.G897T	p.R299S	CCCAAGGGTGCTC	.	178.0	69.0	238.0	0.0	.	92	.	.	Atlas-SNP
OR5P3	120066	hgsc.bcm.edu	hg19	11	7846818	7846818	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OR5P3	NM_153445	exon1	c.C702A	p.R234R	CTTGTGGCGGCCC	.	144.0	63.0	179.0	0.0	.	44	.	.	Atlas-SNP
C11orf16	56673	hgsc.bcm.edu	hg19	11	8947426	8947426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	C11orf16	NM_020643	exon5	c.T788C	p.F263S	CACAGGAATGGAG	.	49.0	19.0	66.0	0.0	.	43	.	.	Atlas-SNP
PDHX	8050	hgsc.bcm.edu	hg19	11	35016491	35016491	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PDHX	NM_003477	exon11	c.C1278T	p.D426D	CATCGACGAATTT	.	143.0	9.0	182.0	0.0	.	40	.	.	Atlas-SNP
ZNF408	79797	hgsc.bcm.edu	hg19	11	46726465	46726465	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF408	NM_024741	exon5	c.G1215T	p.G405G	CCGTGGGGTGCGG	.	91.0	12.0	140.0	0.0	.	70	.	.	Atlas-SNP
CELF1	10658	hgsc.bcm.edu	hg19	11	47504291	47504291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CELF1	NM_001172639	exon9	c.G721T	p.G241X	GGTTTCCCCACAC	.	206.0	89.0	274.0	0.0	.	43	.	.	Atlas-SNP
OR8J1	219477	hgsc.bcm.edu	hg19	11	56127796	56127796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OR8J1	NM_001005205	exon1	c.T74C	p.I25T	TCCAGATTCCCCT	.	173.0	71.0	167.0	0.0	.	87	.	.	Atlas-SNP
OR8U1	219417	hgsc.bcm.edu	hg19	11	56143382	56143382	+	Missense_Mutation	SNP	G	G	T	rs77605314	alternate_allele	TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	OR8U1	NM_001005204	exon1	c.G283T	p.D95Y	TCCTTTGATGCAT	.	66.0	33.0	118.0	0.0	.	59	.	G|0.500;A|0.500	Atlas-SNP
POLR2G	5436	hgsc.bcm.edu	hg19	11	62532653	62532653	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	POLR2G	NM_002696	exon4	c.283-1G>T	.	TTTCTAGGTTGGA	.	191.0	13.0	264.0	0.0	.	6	.	.	Atlas-SNP
PYGM	5837	hgsc.bcm.edu	hg19	11	64520562	64520562	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PYGM	NM_005609	exon12	c.G1501T	p.A501S	CCTCTGCCAGCCC	.	134.0	50.0	195.0	0.0	.	77	.	.	Atlas-SNP
CD248	57124	hgsc.bcm.edu	hg19	11	66082959	66082959	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CD248	NM_020404	exon1	c.C1540G	p.P514A	TAGGGGGCTGGTG	.	160.0	68.0	189.0	0.0	.	69	.	.	Atlas-SNP
XRRA1	143570	hgsc.bcm.edu	hg19	11	74617459	74617459	+	Silent	SNP	G	G	T	rs369421169	alternate_allele	TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	XRRA1	NM_182969	exon10	c.C804A	p.I268I	GTATGGGATCCTG	.	251.0	116.0	355.0	0.0	.	46	.	.	Atlas-SNP
PGR	5241	hgsc.bcm.edu	hg19	11	100998683	100998683	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PGR	NM_000926	exon1	c.G1119A	p.A373A	AGGGTACGCGTCG	.	111.0	42.0	148.0	0.0	.	115	.	.	Atlas-SNP
SCN3B	55800	hgsc.bcm.edu	hg19	11	123516374	123516374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	SCN3B,colon,carcinoma,0,1	SCN3B	NM_018400	exon2	c.C140T	p.S47F	ATGCAGGAGATGC	.	105.0	42.0	122.0	0.0	.	53	.	.	Atlas-SNP
MAGOHB	55110	hgsc.bcm.edu	hg19	12	10766087	10766087	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MAGOHB	NM_018048	exon1	c.C45T	p.H15H	GCCCTTGTGCCCT	.	74.0	32.0	88.0	0.0	.	17	.	.	Atlas-SNP
SCYL2	55681	hgsc.bcm.edu	hg19	12	100728028	100728028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	SCYL2	NM_017988	exon14	c.A1846G	p.M616V	CATATAATGCAAG	.	36.0	20.0	55.0	0.0	.	99	.	.	Atlas-SNP
PIWIL1	9271	hgsc.bcm.edu	hg19	12	130842075	130842075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PIWIL1	NM_004764	exon14	c.A1642G	p.K548E	CAGCAAAAGGTCA	.	185.0	25.0	225.0	0.0	.	157	.	.	Atlas-SNP
HTR2A	3356	hgsc.bcm.edu	hg19	13	47409332	47409332	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HTR2A	NM_000621	exon4	c.C1056T	p.S352S	ATTGCAGGACTCT	.	154.0	48.0	202.0	0.0	.	98	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45665463	45665463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	FANCM	NM_020937	exon21	c.G5429T	p.R1810I	CTCTTAGACTTCC	.	134.0	62.0	195.0	0.0	.	225	.	.	Atlas-SNP
SAV1	60485	hgsc.bcm.edu	hg19	14	51107527	51107527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	SAV1	NM_021818	exon4	c.T891A	p.N297K	ATATGGATTTGCA	.	258.0	84.0	333.0	0.0	.	18	.	.	Atlas-SNP
DACT1	51339	hgsc.bcm.edu	hg19	14	59112430	59112430	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DACT1	NM_016651	exon4	c.C1089G	p.N363K	CGTGAACGCTGAC	.	75.0	29.0	72.0	0.0	.	119	.	.	Atlas-SNP
TGFB3	7043	hgsc.bcm.edu	hg19	14	76437499	76437499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TGFB3	NM_003239	exon3	c.G616C	p.D206H	CAGTGTCAGTGAC	.	42.0	10.0	62.0	0.0	.	25	.	.	Atlas-SNP
PAK6	56924	hgsc.bcm.edu	hg19	15	40565801	40565801	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PAK6	NM_020168	exon9	c.G1667A	p.W556X	ACGTCCCTAAGAG	.	198.0	57.0	243.0	0.0	.	49	.	.	Atlas-SNP
PDXDC1	23042	hgsc.bcm.edu	hg19	16	15103555	15103555	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PDXDC1	NM_015027	exon8	c.G666A	p.E222E	CCTGGAGAAACTG	.	410.0	85.0	582.0	0.0	.	59	.	.	Atlas-SNP
C16orf82	162083	hgsc.bcm.edu	hg19	16	27078698	27078698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	.	NM_001145545	exon1	c.G382T	p.G128C	CAGCTGGGCTCCA	.	35.0	14.0	36.0	0.0	.	.	.	.	Atlas-SNP
ZNF267	10308	hgsc.bcm.edu	hg19	16	31926035	31926035	+	Silent	SNP	T	T	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF267	NM_003414	exon4	c.T465G	p.S155S	TTCTTCTTGTGCC	.	209.0	76.0	214.0	0.0	.	94	.	.	Atlas-SNP
CMTM2	146225	hgsc.bcm.edu	hg19	16	66613710	66613710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CMTM2	NM_001199317	exon1	c.G200T	p.G67V	GGAGGGGGTGTCG	.	95.0	41.0	111.0	0.0	.	33	.	.	Atlas-SNP
FAM65A	79567	hgsc.bcm.edu	hg19	16	67572365	67572365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	FAM65A	NM_001193523	exon2	c.G76A	p.V26M	CTGTCGGTGCGGC	.	128.0	59.0	156.0	0.0	.	104	.	.	Atlas-SNP
HPR	3250	hgsc.bcm.edu	hg19	16	72110626	72110626	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HPR	NM_020995	exon5	c.C693T	p.N231N	TGACAACTTTAAA	.	148.0	70.0	229.0	0.0	.	43	.	.	Atlas-SNP
MON1B	22879	hgsc.bcm.edu	hg19	16	77228415	77228415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	MON1B,NS,carcinoma,0,1	MON1B	NM_014940	exon4	c.G659A	p.R220H	TCCGCCGCCTGCT	.	94.0	34.0	111.0	0.0	.	55	.	.	Atlas-SNP
MBTPS1	8720	hgsc.bcm.edu	hg19	16	84124541	84124541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MBTPS1	NM_003791	exon8	c.G970A	p.E324K	TTAATTCCCACAC	.	151.0	66.0	189.0	0.0	.	85	.	.	Atlas-SNP
ACSF2	80221	hgsc.bcm.edu	hg19	17	48551103	48551103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ACSF2	NM_025149	exon13	c.A1553G	p.E518G	GTGGTGAGAACAT	.	96.0	40.0	109.0	0.0	.	46	.	.	Atlas-SNP
TBX4	9496	hgsc.bcm.edu	hg19	17	59560737	59560737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TBX4	NM_018488	exon8	c.G1498A	p.G500R	CCCCAAGGGTGTG	.	82.0	29.0	120.0	0.0	.	69	.	.	Atlas-SNP
RGS9	8787	hgsc.bcm.edu	hg19	17	63198195	63198195	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	RGS9	NM_003835	exon14	c.A1061T	p.Y354F	AGATTTACAAGTG	.	85.0	23.0	97.0	0.0	.	82	.	.	Atlas-SNP
C19orf21	126353	hgsc.bcm.edu	hg19	19	758698	758698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	C19orf21	NM_173481	exon2	c.G1752T	p.Q584H	TGACCAGAACTCC	.	100.0	26.0	116.0	0.0	.	56	.	.	Atlas-SNP
C19orf21	126353	hgsc.bcm.edu	hg19	19	758699	758699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	C19orf21	NM_173481	exon2	c.A1753G	p.N585D	GACCAGAACTCCA	.	100.0	26.0	115.0	0.0	.	56	.	.	Atlas-SNP
ADAMTS10	81794	hgsc.bcm.edu	hg19	19	8651042	8651042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ADAMTS10	NM_030957	exon22	c.G2624A	p.R875K	CGCTGCCTTTTGG	.	63.0	22.0	71.0	0.0	.	132	.	.	Atlas-SNP
ZNF177	7730	hgsc.bcm.edu	hg19	19	9492041	9492041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF177	NM_001172651	exon6	c.G1034A	p.C345Y	AGGAATGTGGGAA	.	71.0	30.0	125.0	0.0	.	57	.	.	Atlas-SNP
MAP3K10	4294	hgsc.bcm.edu	hg19	19	40704415	40704415	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MAP3K10	NM_002446	exon2	c.G816A	p.P272P	GGCGCCGGAGGTT	.	63.0	20.0	111.0	0.0	.	70	.	.	Atlas-SNP
HIF3A	64344	hgsc.bcm.edu	hg19	19	46832675	46832675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	HIF3A,brain,glioma,0,1	HIF3A	NM_152795	exon12	c.G1652T	p.C551F	TGAGCTGCTCCAG	.	56.0	25.0	59.0	0.0	.	154	.	.	Atlas-SNP
A1BG	1	hgsc.bcm.edu	hg19	19	58864542	58864542	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	A1BG	NM_130786	exon3	c.T92A	p.L31Q	GCCCACAGGCTGG	.	73.0	39.0	104.0	0.0	.	40	.	.	Atlas-SNP
LZTS3	0	hgsc.bcm.edu	hg19	20	3146846	3146846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	.	NM_014731	exon2	c.C620T	p.T207I	GCTGGAGTCATGG	.	108.0	41.0	131.0	0.0	.	.	.	.	Atlas-SNP
LZTS3	0	hgsc.bcm.edu	hg19	20	3147349	3147349	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	.	NM_014731	exon2	c.459+2T>C	.	GGACTGACCTGGT	.	70.0	23.0	95.0	0.0	.	.	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57829455	57829455	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF831	NM_178457	exon5	c.A4691C	p.K1564T	CTGAAAAAACTCA	.	128.0	45.0	159.0	0.0	.	287	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41725559	41725559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DSCAM	NM_001271534	exon5	c.A767G	p.Y256C	CAGCGGTAATCTG	.	56.0	24.0	74.0	0.0	.	347	.	.	Atlas-SNP
ZNF280B	140883	hgsc.bcm.edu	hg19	22	22842866	22842866	+	Silent	SNP	A	A	G	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF280B	NM_080764	exon4	c.T858C	p.S286S	AAAGTCACTAAGT	.	180.0	51.0	174.0	0.0	.	67	.	.	Atlas-SNP
ISX	91464	hgsc.bcm.edu	hg19	22	35463259	35463259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ISX	NM_001008494	exon1	c.C179T	p.A60V	GAGAAGCTGCGGC	.	101.0	37.0	83.0	0.0	.	62	.	.	Atlas-SNP
TST	7263	hgsc.bcm.edu	hg19	22	37414432	37414432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	TST	NM_003312	exon2	c.G342T	p.W114C	GAACATCCACCAG	.	96.0	22.0	96.0	0.0	.	22	.	.	Atlas-SNP
IL1RAPL1	11141	hgsc.bcm.edu	hg19	X	29973331	29973331	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	IL1RAPL1	NM_014271	exon11	c.A1485T	p.R495S	AACCAGACTTCGA	.	243.0	91.0	340.0	0.0	.	311	.	.	Atlas-SNP
EDA	1896	hgsc.bcm.edu	hg19	X	69249366	69249366	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	EDA	NM_001399	exon5	c.A719T	p.K240I	CTGATAAAGCTGG	.	143.0	56.0	216.0	0.0	.	61	.	.	Atlas-SNP
PHKA1	5255	hgsc.bcm.edu	hg19	X	71855112	71855112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	PHKA1	NM_001172436	exon16	c.A1607G	p.N536S	ATCTTGTTGTCCA	.	160.0	70.0	189.0	0.0	.	129	.	.	Atlas-SNP
ATP7A	538	hgsc.bcm.edu	hg19	X	77243771	77243771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ATP7A	NM_000052	exon3	c.T154A	p.Y52N	ATTATTTATGACC	.	232.0	66.0	292.0	0.0	.	248	.	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	hg19	X	122616686	122616686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GRIA3	NM_000828	exon15	c.G2476A	p.G826S	GTGGCAGGCGTTT	.	171.0	73.0	216.0	0.0	.	386	.	.	Atlas-SNP
SLC9A6	10479	hgsc.bcm.edu	hg19	X	135080330	135080330	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	SLC9A6	NM_001042537	exon3	c.T589A	p.Y197N	GCAGGTTATAGCC	.	436.0	164.0	576.0	0.0	.	64	.	.	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	hg19	X	140993822	140993822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MAGEC1	NM_005462	exon4	c.T632C	p.L211S	CTTTATTGAGTAT	.	780.0	108.0	998.0	1.0	.	317	.	.	Atlas-SNP
GABRA3	2556	hgsc.bcm.edu	hg19	X	151424438	151424438	+	Silent	SNP	T	T	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	GABRA3	NM_000808	exon5	c.A363T	p.T121T	ATGCCATGTCTGC	.	139.0	10.0	191.0	0.0	.	97	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3565967	3565967	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	CSMD1	NM_033225	exon7	c.979delA	p.S327fs	.	.	157.0	56.0	171.0	0.0	.	1469	.	.	Atlas-Indel,Pindel
ZNF239	8187	hgsc.bcm.edu	hg19	10	44052345	44052346	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF239	NM_001099284	exon3	c.1183_1184del	p.395_395del	.	.	224.0	65.0	283.0	0.0	.	45	.	.	Atlas-Indel,Pindel
EFCAB13	124989	hgsc.bcm.edu	hg19	17	45479563	45479563	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	.	NM_152347	exon18	c.2010delG	p.R670fs	.	.	95.0	39.0	118.0	0.0	.	.	.	.	Atlas-Indel,Pindel
HTT	3064	hgsc.bcm.edu	hg19	4	3209018	3209019	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HTT	NM_002111	exon45	c.6086_6087insA	p.A2029fs	.	.	65.0	19.0	93.0	0.0	.	221	.	.	Atlas-INDEL
ERRFI1	54206	hgsc.bcm.edu	hg19	1	8074176	8074182	+	Frame_Shift_Del	DEL	GGCTTCA	GGCTTCA	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	GGCTTCA	GGCTTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ERRFI1	NM_018948	exon4	c.478_484del	p.160_162del	.	.	40.0	18.0	136.0	0.0	.	42	.	.	Atlas-Indel,Pindel
DNAH1	25981	hgsc.bcm.edu	hg19	3	52394057	52394057	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	DNAH1	NM_015512	exon27	c.4532delT	p.V1511fs	.	.	92.0	20.0	98.0	0.0	.	534	.	.	Atlas-Indel,Pindel
ZNF772	400720	hgsc.bcm.edu	hg19	19	57987070	57987075	+	In_Frame_Del	DEL	GGTACA	GGTACA	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	GGTACA	GGTACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ZNF772	NM_001144068	exon3	c.153_158del	p.51_53del	.	.	186.0	34.0	323.0	0.0	.	42	.	.	Atlas-Indel,Pindel
MGAT5B	146664	hgsc.bcm.edu	hg19	17	74936580	74936580	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	MGAT5B	NM_198955	exon12	c.1707delC	p.P569fs	.	.	90.0	27.0	121.0	0.0	.	98	.	.	Pindel
ATP2B4	493	hgsc.bcm.edu	hg19	1	203667458	203667481	+	In_Frame_Del	DEL	CGCCCTGCTGGTGAAGAAAATGAA	CGCCCTGCTGGTGAAGAAAATGAA	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	CGCCCTGCTGGTGAAGAAAATGAA	CGCCCTGCTGGTGAAGAAAATGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	ATP2B4	NM_001001396	exon3	c.366_389del	p.122_130del	.	.	223.0	29.0	250.0	0.0	.	226	.	.	Pindel
HTT	3064	hgsc.bcm.edu	hg19	4	3209019	3209019	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A11D-01A-11D-A12Z-10	TCGA-DD-A11D-11A-12D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ef36ae28-ea74-4d7d-9fe3-df3b7ee12a58	6509e096-9af2-4933-9691-7463020c7f8d	.	HTT	NM_002111	exon45	c.6086delC	p.A2029fs	.	.	65.0	16.0	93.0	0.0	.	221	.	.	Pindel