Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PRAMEF2	65122	hgsc.bcm.edu	hg19	1	12920107	12920107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PRAMEF2	NM_023014	exon3	c.C847T	p.H283Y	AGTGGGCACCTGG	.	58.0	20.0	91.0	0.0	.	85	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16257658	16257658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SPEN	NM_015001	exon11	c.T4923G	p.S1641R	TCCAAGTGTCACA	.	64.0	20.0	68.0	0.0	.	374	.	.	Atlas-SNP
PHC2	1912	hgsc.bcm.edu	hg19	1	33799862	33799862	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PHC2	NM_198040	exon9	c.C1587T	p.T529T	GAGGTCGGTCAGT	.	108.0	48.0	98.0	0.0	.	78	.	.	Atlas-SNP
WDR65	149465	hgsc.bcm.edu	hg19	1	43649280	43649280	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	WDR65	NM_152498	exon4	c.G493C	p.D165H	CCACAGGATAACA	.	80.0	40.0	140.0	0.0	.	76	.	.	Atlas-SNP
TAL1	6886	hgsc.bcm.edu	hg19	1	47685719	47685719	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TAL1	NM_003189	exon4	c.C669T	p.L223L	CTTGCTGAGCTTC	.	178.0	71.0	224.0	0.0	.	31	.	.	Atlas-SNP
GBP2	2634	hgsc.bcm.edu	hg19	1	89573964	89573964	+	Missense_Mutation	SNP	C	C	T	rs200077424	bycluster	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	GBP2,NS,carcinoma,0,1	GBP2	NM_004120	exon11	c.G1670A	p.R557H	AGAAGGCGTTCCT	.	52.0	20.0	74.0	0.0	.	58	.	C|0.999;T|0.001	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103461593	103461593	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	COL11A1	NM_080629	exon27	c.C2283T	p.P761P	ACCAGGGGGACCC	.	20.0	16.0	88.0	0.0	.	972	.	.	Atlas-SNP
ANKRD34A	284615	hgsc.bcm.edu	hg19	1	145474731	145474731	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ANKRD34A	NM_001039888	exon4	c.T1403A	p.L468X	GCAAATTGGTGAG	.	43.0	16.0	27.0	0.0	.	52	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152280175	152280175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FLG	NM_002016	exon3	c.A7187G	p.H2396R	TCTTGGTGGCTCT	.	404.0	106.0	393.0	1.0	.	900	.	.	Atlas-SNP
VANGL2	57216	hgsc.bcm.edu	hg19	1	160388869	160388869	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	VANGL2	NM_020335	exon4	c.C270T	p.R90R	CACACGCATCGCC	.	115.0	21.0	67.0	0.0	.	83	.	.	Atlas-SNP
FAM20B	9917	hgsc.bcm.edu	hg19	1	179013021	179013021	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FAM20B	NM_014864	exon2	c.C39T	p.L13L	AATTCTCCTTGTC	.	209.0	75.0	127.0	0.0	.	38	.	.	Atlas-SNP
KIF21B	23046	hgsc.bcm.edu	hg19	1	200960199	200960199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIF21B	NM_017596	exon18	c.G2533T	p.D845Y	CAGAGTCCAGCAT	.	171.0	47.0	121.0	0.0	.	208	.	.	Atlas-SNP
RBBP5	5929	hgsc.bcm.edu	hg19	1	205084043	205084043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RBBP5	NM_005057	exon3	c.C92T	p.T31I	TTAAAGGTGCAAG	.	369.0	120.0	192.0	0.0	.	45	.	.	Atlas-SNP
PTPN14	5784	hgsc.bcm.edu	hg19	1	214557484	214557484	+	Missense_Mutation	SNP	G	G	A	rs200947677	bycluster	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	PTPN14,caecum,carcinoma,0,2	PTPN14	NM_005401	exon13	c.C1714T	p.R572W	GTGGCCGTGGGTA	.	54.0	18.0	55.0	0.0	.	168	.	G|0.999;A|0.001	Atlas-SNP
ZNF695	57116	hgsc.bcm.edu	hg19	1	247162655	247162655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF695	NM_001204221	exon3	c.A254G	p.H85R	CCTGAGTGTCTGG	.	196.0	85.0	310.0	0.0	.	55	.	.	Atlas-SNP
SUCLG1	8802	hgsc.bcm.edu	hg19	2	84660559	84660559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SUCLG1	NM_003849	exon6	c.G590A	p.G197D	ACAATGCCTTAAC	.	81.0	34.0	172.0	0.0	.	30	.	.	Atlas-SNP
TANC1	85461	hgsc.bcm.edu	hg19	2	160053178	160053178	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TANC1	NM_033394	exon18	c.C3039T	p.H1013H	GGGCCACGGTGAC	.	100.0	35.0	106.0	0.0	.	157	.	.	Atlas-SNP
PLEKHM3	389072	hgsc.bcm.edu	hg19	2	208865840	208865840	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PLEKHM3	NM_001080475	exon2	c.A524G	p.Q175R	AATGGCTGCTGCT	.	156.0	84.0	168.0	0.0	.	101	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	hg19	2	234394614	234394614	+	Silent	SNP	G	G	A	rs369926451	bycluster	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	USP40	NM_018218	exon28	c.C3240T	p.D1080D	CAGCACGTCCTGG	.	9.0	9.0	22.0	0.0	.	174	.	.	Atlas-SNP
SATB1	6304	hgsc.bcm.edu	hg19	3	18436227	18436227	+	Silent	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SATB1	NM_002971	exon7	c.T933A	p.P311P	ACTGATAGGTGTT	.	103.0	60.0	156.0	0.0	.	96	.	.	Atlas-SNP
RBM6	10180	hgsc.bcm.edu	hg19	3	50095360	50095360	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RBM6	NM_005777	exon9	c.G1893A	p.R631R	TCGAAGGGAAGGG	.	52.0	35.0	49.0	0.0	.	85	.	.	Atlas-SNP
ARHGAP31	57514	hgsc.bcm.edu	hg19	3	119087231	119087231	+	Silent	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ARHGAP31	NM_020754	exon3	c.C216G	p.G72G	GTTTGGCTCAGAT	.	86.0	57.0	86.0	0.0	.	175	.	.	Atlas-SNP
PAK2	5062	hgsc.bcm.edu	hg19	3	196547330	196547330	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	PAK2_ENST00000327134,NS,carcinoma,0,2	PAK2	NM_002577	exon13	c.G1242A	p.V414V	AGAGGTGGTTACA	.	146.0	40.0	135.0	0.0	.	113	.	.	Atlas-SNP
FAM184B	27146	hgsc.bcm.edu	hg19	4	17710586	17710586	+	Missense_Mutation	SNP	C	C	A	rs61746992	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	FAM184B	NM_015688	exon2	c.G823T	p.D275Y	CCAGGTCTCCTTC	.	110.0	45.0	147.0	0.0	.	38	.	C|0.972;G|0.028	Atlas-SNP
GUF1	60558	hgsc.bcm.edu	hg19	4	44697656	44697656	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GUF1	NM_021927	exon15	c.A1740T	p.K580N	TGGCAAAGCCATA	.	63.0	35.0	69.0	0.0	.	72	.	.	Atlas-SNP
CNGA1	1259	hgsc.bcm.edu	hg19	4	47939598	47939598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CNGA1	NM_001142564	exon10	c.A1120G	p.M374V	TATACATAACAAG	.	92.0	43.0	140.0	0.0	.	74	.	.	Atlas-SNP
AFP	174	hgsc.bcm.edu	hg19	4	74319616	74319616	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	AFP	NM_001134	exon13	c.1785+2T>C	.	AAGAGGTACATGC	.	122.0	9.0	184.0	0.0	.	60	.	.	Atlas-SNP
WDR17	116966	hgsc.bcm.edu	hg19	4	177017675	177017675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	WDR17	NM_170710	exon2	c.C5T	p.A2V	CTATGGCTTGGAT	.	48.0	17.0	121.0	0.0	.	198	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183675952	183675952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_001080477	exon21	c.G4432C	p.A1478P	TCCCTGGCTGCTT	.	43.0	21.0	91.0	0.0	.	.	.	.	Atlas-SNP
CMBL	134147	hgsc.bcm.edu	hg19	5	10288612	10288612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CMBL	NM_138809	exon3	c.A245T	p.Q82L	GGCTCTTGCCCTA	.	60.0	16.0	57.0	0.0	.	24	.	.	Atlas-SNP
PSD2	84249	hgsc.bcm.edu	hg19	5	139189232	139189232	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PSD2	NM_032289	exon2	c.T207C	p.H69H	CTTCCATGGCCTC	.	168.0	88.0	231.0	0.0	.	88	.	.	Atlas-SNP
MRPL22	29093	hgsc.bcm.edu	hg19	5	154346429	154346429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	MRPL22,colon,carcinoma,0,1	MRPL22	NM_014180	exon7	c.G593A	p.R198H	AGCTTCGCAGCCG	.	63.0	33.0	49.0	0.0	.	18	.	.	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	hg19	6	17640200	17640200	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NUP153	NM_005124	exon15	c.G1816C	p.G606R	CACTTCCTTCTTT	.	78.0	24.0	92.0	0.0	.	116	.	.	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	hg19	6	29080221	29080221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OR2J3	NM_001005216	exon1	c.C554A	p.P185Q	AAGTTCCAGCACT	.	301.0	85.0	328.0	0.0	.	53	.	.	Atlas-SNP
PPP2R5D	5528	hgsc.bcm.edu	hg19	6	42975774	42975774	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PPP2R5D	NM_006245	exon7	c.C828T	p.I276I	TTATATCCGTAGG	.	126.0	70.0	109.0	0.0	.	47	.	.	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	hg19	6	123825006	123825006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TRDN	NM_001256020	exon8	c.G651T	p.K217N	TTTAGTCTTTTCT	.	248.0	209.0	510.0	0.0	.	88	.	.	Atlas-SNP
RNF216	54476	hgsc.bcm.edu	hg19	7	5662625	5662625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RNF216	NM_207111	exon17	c.A2638G	p.M880V	GCCCCATGTTGAG	.	63.0	17.0	115.0	0.0	.	71	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48467402	48467402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ABCA13	NM_152701	exon42	c.C12499T	p.H4167Y	AAATCTCACATTG	.	106.0	52.0	151.0	0.0	.	1192	.	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	hg19	7	88966173	88966173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF804B	NM_181646	exon4	c.C3877T	p.P1293S	TTTATTCCTACAT	.	127.0	62.0	211.0	0.0	.	322	.	.	Atlas-SNP
ASNS	440	hgsc.bcm.edu	hg19	7	97481701	97481701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ASNS	NM_133436	exon13	c.G1556A	p.R519H	ACTTGACGGTAGT	.	125.0	50.0	135.0	0.0	.	97	.	.	Atlas-SNP
ALKBH4	54784	hgsc.bcm.edu	hg19	7	102100057	102100057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ALKBH4	NM_017621	exon2	c.G315T	p.R105S	CTGCTTCCTCCGT	.	29.0	12.0	56.0	0.0	.	21	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69021775	69021775	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PREX2	NM_024870	exon25	c.A3063T	p.E1021D	CTTAGAAACCCAA	.	102.0	29.0	93.0	0.0	.	614	.	.	Atlas-SNP
RGS22	26166	hgsc.bcm.edu	hg19	8	101118126	101118126	+	Silent	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RGS22	NM_015668	exon1	c.G24T	p.A8A	CCTACCCGCGGTG	.	60.0	34.0	40.0	0.0	.	319	.	.	Atlas-SNP
KIAA2026	158358	hgsc.bcm.edu	hg19	9	5920263	5920263	+	Silent	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	KIAA2026,NS,carcinoma,0,1	KIAA2026	NM_001017969	exon8	c.C5733A	p.L1911L	TATAAGGAGAACA	.	53.0	31.0	72.0	0.0	.	231	.	.	Atlas-SNP
C5	727	hgsc.bcm.edu	hg19	9	123792742	123792742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	C5	NM_001735	exon7	c.A691G	p.I231V	GCTCGATTGAGAC	.	186.0	88.0	389.0	0.0	.	124	.	.	Atlas-SNP
CSGALNACT2	55454	hgsc.bcm.edu	hg19	10	43650967	43650967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CSGALNACT2	NM_018590	exon2	c.C370T	p.L124F	GAGTTTCTTCATT	.	66.0	33.0	97.0	0.0	.	67	.	.	Atlas-SNP
PALD1	27143	hgsc.bcm.edu	hg19	10	72324191	72324191	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	.	NM_014431	exon19	c.T2334C	p.Y778Y	GCGCTATGTCTGC	.	79.0	20.0	168.0	0.0	.	.	.	.	Atlas-SNP
TMEM254	80195	hgsc.bcm.edu	hg19	10	81850592	81850592	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TMEM254	NM_001270367	exon4	c.G363C	p.W121C	ACTCTGGTTCCTA	.	89.0	31.0	186.0	0.0	.	1	.	.	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	hg19	10	105162878	105162878	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PDCD11	NM_014976	exon4	c.C238T	p.L80L	TAGTCCCTGTGTG	.	216.0	59.0	348.0	0.0	.	160	.	.	Atlas-SNP
CASP7	840	hgsc.bcm.edu	hg19	10	115457351	115457351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CASP7	NM_001267057	exon2	c.G323A	p.R108H	TGTACCGTCCCTC	.	75.0	17.0	127.0	0.0	.	21	.	.	Atlas-SNP
ZNF214	7761	hgsc.bcm.edu	hg19	11	7021165	7021165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF214	NM_013249	exon3	c.A1749C	p.K583N	ACGGCATTTGTAA	.	66.0	22.0	111.0	0.0	.	65	.	.	Atlas-SNP
CALCA	796	hgsc.bcm.edu	hg19	11	14990439	14990439	+	Missense_Mutation	SNP	A	A	T	rs377551213	alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CALCA	NM_001741	exon4	c.T332A	p.I111N	ACCCCAATTGCAG	.	130.0	64.0	190.0	0.0	.	30	.	.	Atlas-SNP
LRRC4C	57689	hgsc.bcm.edu	hg19	11	40137651	40137651	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LRRC4C	NM_001258419	exon7	c.G192A	p.R64R	GTTTTTCCGAACA	.	92.0	39.0	97.0	0.0	.	190	.	.	Atlas-SNP
ALKBH3	221120	hgsc.bcm.edu	hg19	11	43923153	43923153	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ALKBH3	NM_139178	exon8	c.A547T	p.N183Y	TATCGCAATGAGA	.	65.0	26.0	104.0	0.0	.	33	.	.	Atlas-SNP
CTNND1	1500	hgsc.bcm.edu	hg19	11	57569523	57569523	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CTNND1	NM_001085461	exon7	c.C1275T	p.H425H	AGTGCACCTTGGA	.	77.0	36.0	128.0	0.0	.	203	.	.	Atlas-SNP
GAL3ST3	89792	hgsc.bcm.edu	hg19	11	65810617	65810617	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	GAL3ST3,NS,carcinoma,0,1	GAL3ST3	NM_033036	exon3	c.C657T	p.D219D	GGCGTCGTCGCGC	.	40.0	20.0	49.0	0.0	.	40	.	.	Atlas-SNP
GRM5	2915	hgsc.bcm.edu	hg19	11	88583097	88583097	+	Silent	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	GRM5_ENST00000418177,caecum,carcinoma,0,2	GRM5	NM_000842	exon3	c.G888A	p.A296A	TTCTCCCGCTAGA	.	146.0	78.0	193.0	0.0	.	414	.	.	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121383718	121383718	+	Silent	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SORL1	NM_003105	exon7	c.T946C	p.L316L	CATCTCTTGGGCA	.	90.0	32.0	97.0	0.0	.	218	.	.	Atlas-SNP
TMEM225	338661	hgsc.bcm.edu	hg19	11	123753908	123753908	+	Silent	SNP	A	A	T	rs369698336	alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TMEM225	NM_001013743	exon4	c.T615A	p.R205R	GTGTGCACGGACA	.	206.0	94.0	201.0	0.0	.	56	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57556190	57556190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	LRP1	NM_002332	exon14	c.G2293T	p.V765F	GGCAGTGTCTACC	.	72.0	30.0	105.0	0.0	.	428	.	.	Atlas-SNP
MAB21L1	4081	hgsc.bcm.edu	hg19	13	36049572	36049572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	MAB21L1	NM_005584	exon1	c.C704T	p.A235V	GCCTCCGCGAACT	.	21.0	18.0	52.0	0.0	.	52	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24884257	24884257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	NYNRIN	NM_025081	exon9	c.T3302C	p.M1101T	GCTTCATGGACTC	.	76.0	27.0	89.0	0.0	.	120	.	.	Atlas-SNP
KIAA0317	9870	hgsc.bcm.edu	hg19	14	75140804	75140804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	KIAA0317	NM_001039479	exon9	c.T1091A	p.V364E	TCCTTCACTGAGA	.	50.0	14.0	105.0	0.0	.	68	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96795907	96795907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ATG2B	NM_018036	exon12	c.A1795C	p.S599R	CAGTACTAAAATA	.	85.0	50.0	166.0	0.0	.	169	.	.	Atlas-SNP
ACTC1	70	hgsc.bcm.edu	hg19	15	35085586	35085586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ACTC1	NM_005159	exon3	c.C314T	p.T105I	AGCAGGGTGGGGT	.	88.0	62.0	155.0	0.0	.	75	.	.	Atlas-SNP
PPIP5K1	9677	hgsc.bcm.edu	hg19	15	43827486	43827486	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PPIP5K1	NM_001130858	exon31	c.G3688C	p.E1230Q	CTTGCTCCCCTTC	.	215.0	84.0	262.0	0.0	.	34	.	.	Atlas-SNP
RHBDF1	64285	hgsc.bcm.edu	hg19	16	111695	111695	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RHBDF1	NM_022450	exon10	c.1209-1G>A	.	AAGGGCCTGCGGG	.	45.0	21.0	45.0	0.0	.	54	.	.	Atlas-SNP
ASPHD1	253982	hgsc.bcm.edu	hg19	16	29912566	29912566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ASPHD1	NM_181718	exon1	c.C274T	p.L92F	CTGTTCCTCTGGT	.	110.0	22.0	92.0	0.0	.	28	.	.	Atlas-SNP
GPR114	221188	hgsc.bcm.edu	hg19	16	57596061	57596061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	GPR114	NM_153837	exon2	c.C56T	p.A19V	AGAATGCAACAAC	.	47.0	23.0	68.0	0.0	.	52	.	.	Atlas-SNP
ACLY	47	hgsc.bcm.edu	hg19	17	40024989	40024989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ACLY	NM_001096	exon28	c.G3184A	p.V1062M	CCAGCACAAAGAT	.	48.0	19.0	76.0	0.0	.	85	.	.	Atlas-SNP
GNGT2	2793	hgsc.bcm.edu	hg19	17	47284179	47284179	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	GNGT2,bladder,carcinoma,0,1	GNGT2	NM_031498	exon4	c.C150T	p.L50L	GCCTTTGAGAAAA	.	160.0	64.0	247.0	0.0	.	12	.	.	Atlas-SNP
CUEDC1	404093	hgsc.bcm.edu	hg19	17	55945598	55945598	+	Missense_Mutation	SNP	C	C	G	rs34800498	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CUEDC1	NM_001271875	exon8	c.G947C	p.R316P	TTCCTCCGGGTGG	.	76.0	43.0	102.0	0.0	.	37	.	C|0.958;T|0.042	Atlas-SNP
OR4D2	124538	hgsc.bcm.edu	hg19	17	56247344	56247344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OR4D2	NM_001004707	exon1	c.G328T	p.A110S	GGAGGTGCCATGG	.	56.0	15.0	103.0	0.0	.	48	.	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9255525	9255525	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ANKRD12	NM_015208	exon9	c.A2260T	p.I754F	GACAAGATTAAAA	.	24.0	11.0	64.0	0.0	.	167	.	.	Atlas-SNP
ZBTB7C	201501	hgsc.bcm.edu	hg19	18	45555810	45555810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZBTB7C	NM_001039360	exon3	c.C1681T	p.R561C	GCGCGCGCCCGAA	.	26.0	10.0	33.0	0.0	.	73	.	.	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	hg19	19	6919616	6919616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	EMR1,right_upper_lobe,carcinoma,+1,1	EMR1	NM_001256253	exon13	c.G1478A	p.R493H	ATGAGCGCTTCTT	.	133.0	60.0	188.0	0.0	.	153	.	.	Atlas-SNP
SLC44A2	57153	hgsc.bcm.edu	hg19	19	10753056	10753056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	SLC44A2	NM_020428	exon21	c.G1943A	p.G648D	TCGTTGGCTCCTA	.	205.0	82.0	310.0	0.0	.	56	.	.	Atlas-SNP
IL12RB1	3594	hgsc.bcm.edu	hg19	19	18188364	18188364	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	IL12RB1	NM_153701	exon5	c.C511T	p.Q171X	GGAACTGCACCTC	.	58.0	22.0	71.0	0.0	.	92	.	.	Atlas-SNP
ZNF729	100287226	hgsc.bcm.edu	hg19	19	22499181	22499181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	ZNF729	NM_001242680	exon4	c.G2962T	p.G988W	CATACTGGGGAGA	.	115.0	42.0	221.0	0.0	.	78	.	.	Atlas-SNP
HAUS5	23354	hgsc.bcm.edu	hg19	19	36106172	36106172	+	Silent	SNP	G	G	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	HAUS5	NM_015302	exon6	c.G369A	p.Q123Q	CACCCAGCGTCGA	.	42.0	22.0	61.0	0.0	.	41	.	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	hg19	20	40714481	40714481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	PTPRT	NM_133170	exon29	c.T3916C	p.Y1306H	GCCAGTACTGCAT	.	102.0	30.0	82.0	0.0	.	372	.	.	Atlas-SNP
TTPAL	79183	hgsc.bcm.edu	hg19	20	43108685	43108685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TTPAL	NM_001039199	exon2	c.T46G	p.S16A	GTGGCCTCACTCT	.	60.0	35.0	59.0	0.0	.	31	.	.	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	hg19	21	38572587	38572587	+	Missense_Mutation	SNP	G	G	A	rs200071342		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	TTC3	NM_001001894	exon45	c.G5905A	p.V1969M	AAAAACGTGCGTG	.	138.0	57.0	210.0	0.0	.	182	.	G|0.999;A|0.001	Atlas-SNP
RRP1B	23076	hgsc.bcm.edu	hg19	21	45089836	45089836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	RRP1B	NM_015056	exon2	c.C202A	p.P68T	GATGAACCCCTTC	.	192.0	103.0	310.0	0.0	.	51	.	.	Atlas-SNP
VCL	7414	hgsc.bcm.edu	hg19	10	75830792	75830792	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	VCL	NM_003373	exon4	c.449delT	p.V150fs	.	.	105.0	61.0	201.0	0.0	.	77	.	.	Atlas-Indel,Pindel
OTX1	5013	hgsc.bcm.edu	hg19	2	63282697	63282698	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	OTX1	NM_014562	exon5	c.310_311del	p.104_104del	.	.	91.0	22.0	173.0	0.0	.	49	.	.	Atlas-Indel,Pindel
CISH	1154	hgsc.bcm.edu	hg19	3	50645109	50645109	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CISH	NM_013324	exon4	c.758delC	p.A253fs	.	.	76.0	46.0	138.0	0.0	.	27	.	.	Atlas-Indel,Pindel
CAMKV	79012	hgsc.bcm.edu	hg19	3	49897070	49897070	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A11C-01A-11D-A12Z-10	TCGA-DD-A11C-11A-11D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a9cde9a5-c0ff-4c01-8182-81c9ef3920e6	d5d8c783-db2c-487c-9cce-1b76137ddc15	.	CAMKV	NM_024046	exon11	c.1188delA	p.P396fs	.	.	185.0	19.0	199.0	0.0	.	84	.	.	Atlas-INDEL